Citrus Sinensis ID: 046028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFFIAMSIGFAVGFGAVISPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccEEEEEEEEcHHEEEEEEEEcc
Coil and Loop (DISEMBL)
MGRFVSLYALNlshnaltgsipssfgnlkhiesldlstnnlsgKISAQLASLNFLSVLNLSYNnlvgkiptstqlqsfsptsyevnkglygppltnesqarppelqpspppassdeiDWFFIAMSIGFAVGFGAVISPL
Flexible Loop (DISEMBL)
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFFIAMSIGFAVGFGAVISPL
Low Complexity Region (SEG)
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQlaslnflsvlnlsynnlVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARppelqpspppassDEIDWFFIAMSIGFAVGFGAVISPL
Disordered region (IsUnstruct)
***FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS*******************************************************************
Disordered Region (DISOPRED)
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPP*************************WFFIAMSIGFAVGFGAVISPL
Disordered Region (DISEMBL)
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN***************ASSDEIDWFFIAMSIGFAVGFGAVISPL
Disordered Region (DISPRO)
*GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNES****************DEIDWFFIAMSIGFAVGFGAVISPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFFIAMSIGFAVGFGAVISPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.899	0.107	0.427	5e-17
Q9LJF3	1164	Receptor-like protein kin	no	no	0.892	0.106	0.435	6e-17
Q9C9H7	847	Receptor-like protein 12	no	no	0.978	0.160	0.388	9e-16
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.892	0.121	0.375	3e-15
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.669	0.077	0.425	5e-14
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.892	0.123	0.392	5e-14
Q00874	372	DNA-damage-repair/tolerat	no	no	0.640	0.239	0.460	8e-14
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.920	0.175	0.357	9e-14
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.604	0.081	0.460	2e-13
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.669	0.081	0.425	3e-13

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G    L  LNL HN +TG+IP SFG LK I  LDLS NNL G +   L SL+FLS L++S
Sbjct: 660 GNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVS 719

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFF 121
            NNL G IP   QL +F  + Y  N GL G PL      RP    P  P  S        
Sbjct: 720 NNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL------RPCGSAPRRPITSRIHAKKQT 773

Query: 122 IAMSIGFAVGF 132
           +A ++   + F
Sbjct: 774 VATAVIAGIAF 784

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L  LNL HN LTG+IP SFG LK I  LDLS N+L G +   L  L+FLS L++S NNL 
Sbjct: 665 LQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLT 724

Query: 67  GKIPTSTQLQSFSPTSYEVNKGLYGPPL-TNESQARPPELQPSPPPASSDEIDWFFIAMS 125
           G IP   QL +F  T Y  N GL G PL    S +RP      P   S          MS
Sbjct: 725 GPIPFGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQS------IATGMS 778

Query: 126 IGFAVGFGAVI 136
            G    F  ++
Sbjct: 779 AGIVFSFMCIV 789

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G    L  LNLS NA T  IP    NL  +E+LD+S N LSG+I   LA+L+FLS +N 
Sbjct: 678 LGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNF 737

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYG-PPLTNESQARPP--ELQPSPPPASSDEI 117
           S+N L G +P  TQ Q    +S+  N GLYG   +  ++ A  P  +L      A  +  
Sbjct: 738 SHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMF 797

Query: 118 DWFFIAMSIGFAVGFGAVI 136
           +W   A++ G  V  G VI
Sbjct: 798 NWVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 9/133 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G    L+ LNL +N L+G+IP++   +  +E LDLS NNLSG I   L  L+FLS  +++
Sbjct: 554 GDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVA 613

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPAS---SDEID 118
           YN L G IPT  Q Q+F  +S+E N+GL G        A P  +    P  S   S +  
Sbjct: 614 YNKLSGPIPTGVQFQTFPNSSFEGNQGLCG------EHASPCHITDQSPHGSAVKSKKNI 667

Query: 119 WFFIAMSIGFAVG 131
              +A+++G  +G
Sbjct: 668 RKIVAVAVGTGLG 680

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G    L+ LNL HN ++GSIP   G+L+ +  LDLS+N L G+I   +++L  L+ ++L
Sbjct: 674 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 733

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
           S NNL G IP   Q ++F P  +  N GL G PL
Sbjct: 734 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 767

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G    L+  +L  NAL+GSIPSS   +  +E+LDLS N LSG I   L  L+FLS  +++
Sbjct: 544 GNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVA 603

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFF 121
           YNNL G IP+  Q Q+F  +S+E N       L  E +    E   S     S       
Sbjct: 604 YNNLSGVIPSGGQFQTFPNSSFESNH------LCGEHRFPCSEGTESALIKRSRRSRGGD 657

Query: 122 IAMSIGFAVG 131
           I M+IG A G
Sbjct: 658 IGMAIGIAFG 667

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 55/89 (61%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L   NLS NAL G+IP  FG+  ++ SLDLS N+LSG+I   L+S  F+  L++S+N L 
Sbjct: 281 LDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLC 340

Query: 67  GKIPTSTQLQSFSPTSYEVNKGLYGPPLT 95
           G+IPT         TS+  N+ L G PLT
Sbjct: 341 GRIPTGFPFDHLEATSFSDNQCLCGGPLT 369

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 9/137 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G+   L+ L L  N L+GSIP    NL ++E LDLS NNLSG I   L +LNFLS  N+
Sbjct: 596 VGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNV 655

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDW- 119
           + N+L G IP+  Q  +F   ++E N  L G  L   +  +P   +       +DE++  
Sbjct: 656 ANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLL--TSCKPTRAK------ENDELNRT 707

Query: 120 FFIAMSIGFAVGFGAVI 136
           F + ++IG+ + F +++
Sbjct: 708 FLMGIAIGYFLSFVSIL 724

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +GR   L+ L+LS N  TG+IP S   L ++E LDLS N+L G I     SL FLS  ++
Sbjct: 556 IGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSV 615

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGL 89
           +YN L G IP+  Q  SF  +S+E N GL
Sbjct: 616 AYNRLTGAIPSGGQFYSFPHSSFEGNLGL 644

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 54/94 (57%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G  ++L  L LSHN L+G IP + G LK++   D S N L G+I    ++L+FL  ++L
Sbjct: 631 IGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDL 690

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
           S N L G IP   QL +   T Y  N GL G PL
Sbjct: 691 SNNELTGPIPQRGQLSTLPATQYANNPGLCGVPL 724

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
147777334	247	hypothetical protein VITISV_012181 [Viti	1.0	0.562	0.575	1e-35
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.992	0.128	0.597	5e-35
297735650	2134	unnamed protein product [Vitis vinifera]	0.971	0.063	0.568	8e-35
359481293	1197	PREDICTED: leucine-rich repeat receptor	1.0	0.116	0.567	9e-35
297735649	778	unnamed protein product [Vitis vinifera]	1.0	0.178	0.567	9e-35
359481304	1057	PREDICTED: LRR receptor-like serine/thre	1.0	0.131	0.564	3e-33
359481296	1075	PREDICTED: receptor-like protein 12-like	1.0	0.129	0.573	3e-33
297735657	774	unnamed protein product [Vitis vinifera]	1.0	0.179	0.564	4e-33
357469037	1039	Receptor-like protein kinase [Medicago t	0.978	0.130	0.546	4e-33
297735654	942	unnamed protein product [Vitis vinifera]	0.985	0.145	0.568	5e-33

>gi|147777334|emb|CAN67204.1| hypothetical protein VITISV_012181 [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 93/139 (66%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           MG  +SLYALNLSHNALTG IPSS G L+ +ESLDLS N+L G+I AQ  SLNFLS LNL
Sbjct: 67  MGSLISLYALNLSHNALTGQIPSSLGKLRQLESLDLSQNSLRGEIPAQFVSLNFLSFLNL 126

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWF 120
           S+N L G+IPT TQLQ+F  +SYE NK L GPPL  +     P       P S  +I+W 
Sbjct: 127 SFNQLEGEIPTGTQLQTFLESSYEGNKELCGPPLKRKCTDPSPPTYEETHPDSGMKINWV 186

Query: 121 FIAMSIGFAVGFGAVISPL 139
           +I   IGF  G G VI PL
Sbjct: 187 YIGAEIGFVTGIGIVIGPL 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 92/139 (66%), Gaps = 1/139 (0%)

Query: 1    MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            MG F SLY LNLSHN  TG IPSS GNL+ +ESLDLS N LSG+I  QLA+LNFLSVLNL
Sbjct: 891  MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNL 950

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWF 120
            S+N LVG+IP   Q+Q+FS TSYE NK L G PL       PPE        S  EI W 
Sbjct: 951  SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLDLSCTDPPPEFDDR-HSGSRMEIKWE 1009

Query: 121  FIAMSIGFAVGFGAVISPL 139
            +IA  IGF  G G VI PL
Sbjct: 1010 YIAPEIGFVTGLGIVIWPL 1028

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735650|emb|CBI18144.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 92/139 (66%)

Query: 1    MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            MG  +SLYALNLSHNALTG IPSS G L+ +ESLDLS N+L G+I  Q  SLNFLS LNL
Sbjct: 1111 MGSLISLYALNLSHNALTGQIPSSLGKLRQLESLDLSQNSLRGEIPPQFVSLNFLSFLNL 1170

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWF 120
            S+N L G+IPT TQLQ+F  +SYE NK L GPPL  +     P       P S  +I+W 
Sbjct: 1171 SFNQLEGEIPTGTQLQTFLESSYEGNKELCGPPLKRKCTDPSPPTSEETHPDSGMKINWV 1230

Query: 121  FIAMSIGFAVGFGAVISPL 139
            +I   IGF  G G VI PL
Sbjct: 1231 YIGAEIGFVTGIGIVIGPL 1249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 95/141 (67%), Gaps = 2/141 (1%)

Query: 1    MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            MG F SLY LNLSHN  TG IPSS GNL+ +ESLDLS N LSG+I  QLA+LNFLSVLNL
Sbjct: 944  MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNL 1003

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSD--EID 118
            S+N LVG+IP   Q+Q+FS TSYE NK L G PL N +   P + +        D  E D
Sbjct: 1004 SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFD 1063

Query: 119  WFFIAMSIGFAVGFGAVISPL 139
            W FI   +GF VG G +++PL
Sbjct: 1064 WEFIITGLGFGVGAGIIVAPL 1084

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735649|emb|CBI18143.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 95/141 (67%), Gaps = 2/141 (1%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           MG F SLY LNLSHN  TG IPSS GNL+ +ESLDLS N LSG+I  QLA+LNFLSVLNL
Sbjct: 525 MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNL 584

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSD--EID 118
           S+N LVG+IP   Q+Q+FS TSYE NK L G PL N +   P + +        D  E D
Sbjct: 585 SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFD 644

Query: 119 WFFIAMSIGFAVGFGAVISPL 139
           W FI   +GF VG G +++PL
Sbjct: 645 WEFIITGLGFGVGAGIIVAPL 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 92/140 (65%), Gaps = 1/140 (0%)

Query: 1    MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            MG F+SLY LNLS N  TG IPSS G L+ +ESLDLS N+LSGKI  +L SL FLSVL+L
Sbjct: 875  MGNFISLYVLNLSGNGFTGQIPSSMGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDL 934

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPL-TNESQARPPELQPSPPPASSDEIDW 119
            S+N LVG IP+  Q Q+FS  S++VNKGL G PL  N  +  PP        AS  EI W
Sbjct: 935  SFNQLVGAIPSGNQFQTFSEASFQVNKGLCGQPLNVNCEEDTPPPTFDDRHSASRMEIKW 994

Query: 120  FFIAMSIGFAVGFGAVISPL 139
             +IA  IGF  G G VI PL
Sbjct: 995  EYIAPEIGFVTGLGIVIWPL 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 1    MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            MG F SLY LNLSHN  TG IPSS GNL+ +ESLDLS N LSG+I  QLA+LNFLSVLNL
Sbjct: 893  MGNFTSLYGLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNL 952

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPP----ELQPSPPPASSDE 116
            S+N LVG+IP   Q+Q+FS  SYE NK L G PL       PP    E        S  E
Sbjct: 953  SFNQLVGRIPPGNQMQTFSEASYEGNKELCGWPLDLSCTDPPPSQGKEEFDDRHSGSRME 1012

Query: 117  IDWFFIAMSIGFAVGFGAVISPL 139
            I W +IA  IGF  G G VI PL
Sbjct: 1013 IKWEYIAPEIGFVTGLGIVIWPL 1035

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735657|emb|CBI18151.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 92/140 (65%), Gaps = 1/140 (0%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           MG F+SLY LNLS N  TG IPSS G L+ +ESLDLS N+LSGKI  +L SL FLSVL+L
Sbjct: 592 MGNFISLYVLNLSGNGFTGQIPSSMGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDL 651

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPL-TNESQARPPELQPSPPPASSDEIDW 119
           S+N LVG IP+  Q Q+FS  S++VNKGL G PL  N  +  PP        AS  EI W
Sbjct: 652 SFNQLVGAIPSGNQFQTFSEASFQVNKGLCGQPLNVNCEEDTPPPTFDDRHSASRMEIKW 711

Query: 120 FFIAMSIGFAVGFGAVISPL 139
            +IA  IGF  G G VI PL
Sbjct: 712 EYIAPEIGFVTGLGIVIWPL 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469037|ref|XP_003604803.1| Receptor-like protein kinase [Medicago truncatula] gi|355505858|gb|AES87000.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 98/139 (70%), Gaps = 3/139 (2%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           F +L+ LN S+N L+G IPSS GNLK +ESLDLS N+L G+I  QLASL+FLS LNLS+N
Sbjct: 859 FKALHVLNFSNNCLSGEIPSSIGNLKQLESLDLSNNSLIGEIPMQLASLSFLSYLNLSFN 918

Query: 64  NLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPAS---SDEIDWF 120
           +  GKIPT TQLQSF  +S++ N GLYGP LT ++  +  EL P P   S   S  IDW 
Sbjct: 919 HFAGKIPTGTQLQSFDDSSFKGNDGLYGPLLTRKAYDKKQELHPQPACRSRKLSCLIDWN 978

Query: 121 FIAMSIGFAVGFGAVISPL 139
           F+++ +GF  G G+VI P+
Sbjct: 979 FLSVELGFIFGLGSVIGPI 997

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735654|emb|CBI18148.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 90/139 (64%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           MG F SL  LNLSHN  TG IPSS GNL+ +ESLDLS N LSG+I  QLA+LNFLSVLNL
Sbjct: 760 MGNFTSLNVLNLSHNGFTGQIPSSIGNLRQLESLDLSRNWLSGEIPTQLANLNFLSVLNL 819

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWF 120
           S+N LVG IPT  QLQ+FS  S+  N+GL G PL    +   P+        S  EI W 
Sbjct: 820 SFNQLVGSIPTGNQLQTFSENSFLGNRGLCGFPLNASCKDGTPQTFDDRHSGSRMEIKWK 879

Query: 121 FIAMSIGFAVGFGAVISPL 139
           +IA  IGF  G G VI PL
Sbjct: 880 YIAPEIGFVTGLGVVIWPL 898

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.971	0.229	0.379	2.6e-14
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.956	0.130	0.366	3.6e-14
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.928	0.147	0.356	7.8e-14
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.928	0.131	0.375	2.5e-13
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	1.0	0.151	0.354	3.7e-13
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.992	0.155	0.365	5.7e-13
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	1.0	0.157	0.351	2e-12
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.964	0.142	0.342	2.7e-12
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.942	0.131	0.356	3.7e-12
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.978	0.156	0.347	5.1e-12

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 52/137 (37%), Positives = 66/137 (48%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G   +L ALNLS+N+ TG IP SF N+  +ESLDLS N LSG+I  +            
Sbjct:   427 IGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDV 486

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARXXXXXXXXXXXXXDEI-DW 119
                   GKIP  TQ+     +S+E N GL G PL  ES  R             +EI +W
Sbjct:   487 SDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPL-EESCLREDAPSTQEPEEEEEEILEW 545

Query:   120 FFIAMSIGFAVGFGAVI 136
                A+  G  V FG  I
Sbjct:   546 RAAAIGYGPGVLFGLAI 562

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 51/139 (36%), Positives = 66/139 (47%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L  LN+S N  TG IPSS  NLK++ESLD+S NN+SG+I  +            
Sbjct:   851 IGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINV 910

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNE----SQARXXXXXXXXXXXXXDE 116
                  VG IP  TQ Q    +SYE N GL GP L N      ++              +E
Sbjct:   911 SHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEE 970

Query:   117 IDWFFIAMSIGFAVG--FG 133
               + +IA  +GFA G  FG
Sbjct:   971 ESFSWIAAGLGFAPGVVFG 989

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 47/132 (35%), Positives = 64/132 (48%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L+ LNLS N  TG IPSS GNL+ +ESLD+S N LSG+I  +            
Sbjct:   707 IGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNF 766

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARXXXXXXXXXXXXXDEI-DW 119
                  VG++P  TQ ++ S +S+E N GL G PL                    +++  W
Sbjct:   767 SHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSW 826

Query:   120 FFIAMSIGFAVG 131
               IA +IGF  G
Sbjct:   827 --IAAAIGFTPG 836

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 51/136 (37%), Positives = 66/136 (48%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L+ LNLS+NAL+G I SS GNL  +ESLD+S N LSG+I  +            
Sbjct:   814 IGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNF 873

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN--ESQARXXXXXXXXXXXXXDE-- 116
                  VG +P  TQ Q+   +S+E N GLYGP L    +   +             DE  
Sbjct:   874 SHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEE 933

Query:   117 -IDWFFIAMSIGFAVG 131
              I W  IA  IGF +G
Sbjct:   934 VISW--IAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 51/144 (35%), Positives = 67/144 (46%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G   +L ALNLS+NA TG IP SF NLK +ESLDLS+N LSG I               
Sbjct:   753 IGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAYVNV 812

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNE---SQARXXXXXXXXXXXXXDE- 116
                  +G+IP  TQ+     +S+E N GL G PL      +                DE 
Sbjct:   813 SHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEEEDEQ 872

Query:   117 -IDWFFIAMSIGFAVGFGAVISPL 139
              ++W  +A+  G  V  G  I+ L
Sbjct:   873 VLNWKAVAIGYGIGVLLGLAIAQL 896

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 53/145 (36%), Positives = 67/145 (46%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G   +L ALNLS+NA TG IP S  NLK IESLDLS+N LSG I               
Sbjct:   720 LGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNV 779

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL------TNESQARXXXXXXXXXXXXX 114
                   G+IP  TQ+     +S+E N GL G PL      TN   A+             
Sbjct:   780 SHNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDE- 838

Query:   115 DEIDWFFIAMSIGFAVGFGAVISPL 139
              E++W  +A+  G  V  G  I+ L
Sbjct:   839 QELNWKAVAIGYGVGVLLGLAIAQL 863

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 51/145 (35%), Positives = 65/145 (44%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G   +L ALNLS+NA TG IP S  NLK IESLDLS+N LSG I               
Sbjct:   722 IGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNV 781

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL------TNESQARXXXXXXXXXXXXX 114
                   G+IP  TQ+     +S+E N GL G PL      TN   A+             
Sbjct:   782 SHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEE 841

Query:   115 DEIDWFFIAMSIGFAVGFGAVISPL 139
               ++W  + +  G  V  G  I+ L
Sbjct:   842 QVLNWKGVGIGYGVGVLLGLAIAQL 866

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 49/143 (34%), Positives = 66/143 (46%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L  LNLS+NA  G IPSS GNL  +ESLD+S N L+G+I  +            
Sbjct:   774 IGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNF 833

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN-----ESQARXXXXXXXXXXXXXD 115
                   G +P  TQ +  + +++E N GL+GP L        + A              +
Sbjct:   834 SHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEE 893

Query:   116 EIDWFFIAMSIGFAVG--FGAVI 136
             EI W  IA +IGF  G  FG  I
Sbjct:   894 EISW--IAAAIGFIPGIVFGLTI 914

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 51/143 (35%), Positives = 66/143 (46%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L+ LNLS NA TG IPSS  NL ++ESLD+S N + G+I  +            
Sbjct:   824 VGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINV 883

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN---ESQA----RXXXXXXXXXXXX 113
                  VG IP  TQ    + +SYE N G+YG  L +   +  A    +            
Sbjct:   884 SHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSE 943

Query:   114 XDE-IDWFFIAMSIGFAVG--FG 133
              DE I W  IA  +GFA G  FG
Sbjct:   944 EDELISW--IAACLGFAPGMVFG 964

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 49/141 (34%), Positives = 66/141 (46%)

Query:     1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
             +G    L+ LNLS NA TG IPSS GNL+ +ESLD+S N LSG+I  +            
Sbjct:   696 IGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNF 755

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN---ESQARXXXXXXXXXXXXXDEI 117
                   G +P  TQ +  + +S++ N GLYG  L     +  A              D  
Sbjct:   756 SHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDRE 815

Query:   118 DWFFIAMSIGFAVG--FGAVI 136
              + +IA +IGF  G  FG  I
Sbjct:   816 VFSWIAAAIGFGPGIAFGLTI 836

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001335001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (747 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           + +   L ++NLS N++ G+IP S G++  +E LDLS N+ +G I   L  L  L +LNL
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEV--NKGLYGPP 93
           + N+L G++P +   +     S+    N GL G P
Sbjct: 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L +L+LSHN L+G IP+SF  +  +  LDLS N LSG+I   L ++  L  +N+S+N+L 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 67  GKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFFIAMSI 126
           G +P++    + + ++   N  L G    + +   PP  +    P+      WF+I  ++
Sbjct: 585 GSLPSTGAFLAINASAVAGNIDLCG---GDTTSGLPPCKRVRKTPSW-----WFYITCTL 636

Query: 127 G-----FAVGFGAV 135
           G       V FG V
Sbjct: 637 GAFLVLALVAFGFV 650

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G    L  L LS N L+G IP    + K + SLDLS N LSG+I A  + +  LS L+L
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 61  SYNNLVGKIPTS 72
           S N L G+IP +
Sbjct: 555 SQNQLSGEIPKN 566

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L  L+LS N  +G++P   G+L  +  L LS N LSG+I  +L+S   L  L+LS+N L 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 67  GKIPTS 72
           G+IP S
Sbjct: 537 GQIPAS 542

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 7e-12
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 9   ALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK 68
            L L +  L G IP+    L+H++S++LS N++ G I   L S+  L VL+LSYN+  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 69  IPTS 72
           IP S
Sbjct: 482 IPES 485

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 9e-12
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  LNLS+N  TGSIP   G++ ++E+LDLS N LSG+I   + S + L VL+L  N L
Sbjct: 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 66  VGKIPTS 72
           VGKIP S
Sbjct: 177 VGKIPNS 183

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G F SL  L+L  N L G IP+S  NL  +E L L++N L G+I  +L  +  L  + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 61  SYNNLVGKIPT 71
            YNNL G+IP 
Sbjct: 220 GYNNLSGEIPY 230

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 24/94 (25%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIE------------------------SLDL 36
           +G   SL  L+L +N LTG IPSS GNLK+++                        SLDL
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Query: 37  STNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70
           S N+LSG+I   +  L  L +L+L  NN  GKIP
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 30/72 (41%), Positives = 42/72 (58%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    SL  L L+ N L G IP   G +K ++ + L  NNLSG+I  ++  L  L+ L+L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 61  SYNNLVGKIPTS 72
            YNNL G IP+S
Sbjct: 244 VYNNLTGPIPSS 255

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G   +L  L+LS+N L+G IP+  G+   ++ LDL  N L GKI   L +L  L  L L+
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 62  YNNLVGKIP 70
            N LVG+IP
Sbjct: 197 SNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+L  N  TG IP +  +L  ++ L L +N  SG+I   L   N L+VL+LS NNL
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 66  VGKIPTS 72
            G+IP  
Sbjct: 369 TGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 29/64 (45%), Positives = 39/64 (60%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L +L+LS N+L+G IP     L+++E L L +NN +GKI   L SL  L VL L  N   
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 67  GKIP 70
           G+IP
Sbjct: 346 GEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  L+L+ N   G +P SFG+ K +E+LDLS N  SG +  +L SL+ L  L LS N L
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 66  VGKIP 70
            G+IP
Sbjct: 512 SGEIP 516

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 30/72 (41%), Positives = 39/72 (54%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G+  SL  + L +N L+G IP   G L  +  LDL  NNL+G I + L +L  L  L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 61  SYNNLVGKIPTS 72
             N L G IP S
Sbjct: 268 YQNKLSGPIPPS 279

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          +L +L+LS+N LT     +F  L +++ LDLS NNL+       + L  L  L+LS NNL
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  + L  N+ +G +PS F  L  +  LD+S NNL G+I+++   +  L +L+L+ N  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 66  VGKIPTS 72
            G +P S
Sbjct: 465 FGGLPDS 471

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L  L L  N  +G IP + G   ++  LDLSTNNL+G+I   L S   L  L L  N+L 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 67  GKIPTS 72
           G+IP S
Sbjct: 394 GEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 9   ALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF-LSVLNLSYNNLVG 67
           +++LS   ++G I S+   L +I++++LS N LSG I   + + +  L  LNLS NN  G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 68  KIP 70
            IP
Sbjct: 133 SIP 135

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 27  NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79
           N   + S+DLS  N+SGKIS+ +  L ++  +NLS N L G IP      S S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L+ L L  N+L G IP S G  + +  + L  N+ SG++ ++   L  +  L++S NNL 
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 67  GKIPTS----TQLQSFS 79
           G+I +       LQ  S
Sbjct: 442 GRINSRKWDMPSLQMLS 458

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G+  +L  L+LS N LTG IP    +  ++  L L +N+L G+I   L +   L  + L
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 61  SYNNLVGKIPTS-TQLQ 76
             N+  G++P+  T+L 
Sbjct: 412 QDNSFSGELPSEFTKLP 428

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 6   SLYALNLSHNALTGS-IPS---SFGNLKHIESLDLSTNNL----SGKISAQLASLNFLSV 57
            L  LNL++N +  + I +         ++E LDL+ N L    +  ++  LASL  L V
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 58  LNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGL 89
           LNL  NNL     T     + +      N  L
Sbjct: 226 LNLGDNNL-----TDAGAAALASALLSPNISL 252

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PLN03150	623	hypothetical protein; Provisional	99.61
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.49
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
PLN03150	623	hypothetical protein; Provisional	99.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.02
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.52
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.0
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.99
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.71
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.76
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.43
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.15
smart00370	26	LRR Leucine-rich repeats, outliers.	95.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.25
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.88
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.75
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.53
PRK15386	426	type III secretion protein GogB; Provisional	90.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.9
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	89.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.88
PRK15386	426	type III secretion protein GogB; Provisional	84.6

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.2e-15  Score=119.18  Aligned_cols=98  Identities=35%  Similarity=0.564  Sum_probs=85.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcc--cCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQ--LQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~--l~~l~   79 (139)
                      +.+++|+.|+|++|.+.|.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.++|.+|....  ...+.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            4678999999999999999999999999999999999999999999999999999999999999999997642  23455


Q ss_pred             CcccccCCCCCCCCCCCCCC
Q 046028           80 PTSYEVNKGLYGPPLTNESQ   99 (139)
Q Consensus        80 ~l~~~~n~~~c~~p~~~~~~   99 (139)
                      .+.+.+|+.+|+.|....|.
T Consensus       519 ~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        519 SFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             eEEecCCccccCCCCCCCCc
Confidence            67788999999877555564

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.49  E-value=2.9e-14  Score=116.05  Aligned_cols=90  Identities=36%  Similarity=0.569  Sum_probs=55.7

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.+++++|.+.+.+|....+.++....
T Consensus       521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~  600 (968)
T PLN00113        521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA  600 (968)
T ss_pred             CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence            44556666666666666666666666666666666666666666666666666666666666666666555555555555


Q ss_pred             cccCCCCCCC
Q 046028           83 YEVNKGLYGP   92 (139)
Q Consensus        83 ~~~n~~~c~~   92 (139)
                      +.+|+.+|+.
T Consensus       601 ~~~n~~lc~~  610 (968)
T PLN00113        601 VAGNIDLCGG  610 (968)
T ss_pred             hcCCccccCC
Confidence            6666666653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.31  E-value=1.9e-12  Score=105.54  Aligned_cols=92  Identities=38%  Similarity=0.553  Sum_probs=78.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      .++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|++.+.+|... .+..+..
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            356778889999999988899889999999999999999999999999999999999999999998888764 6777888


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +.+.+|+..+..|
T Consensus       576 l~ls~N~l~~~~p  588 (968)
T PLN00113        576 VNISHNHLHGSLP  588 (968)
T ss_pred             EeccCCcceeeCC
Confidence            8888888776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=6.5e-12  Score=69.70  Aligned_cols=61  Identities=46%  Similarity=0.586  Sum_probs=54.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL   65 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l   65 (139)
                      ++|++|++++|+++...+..|..+++|++|++++|+++...+..|..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999955557899999999999999999977778899999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=99.17  E-value=4.4e-11  Score=93.75  Aligned_cols=87  Identities=37%  Similarity=0.559  Sum_probs=79.5

Q ss_pred             CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCccccc
Q 046028            7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEV   85 (139)
Q Consensus         7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~~   85 (139)
                      ++.|+|++|.+.|.+|..+..+++|+.|++++|.++|.+|..+..+.+|+.|++++|++.+.+|... .+.+|+.+.+.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            6789999999999999999999999999999999999999999999999999999999999998764 788899999988


Q ss_pred             CCCCCCCC
Q 046028           86 NKGLYGPP   93 (139)
Q Consensus        86 n~~~c~~p   93 (139)
                      |...+..|
T Consensus       500 N~l~g~iP  507 (623)
T PLN03150        500 NSLSGRVP  507 (623)
T ss_pred             CcccccCC
Confidence            87665444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.02  E-value=1.2e-10  Score=85.21  Aligned_cols=92  Identities=25%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS   79 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~   79 (139)
                      |.+|++|+.|+|++|+++..-+.+|.+..+++.|.|..|++....-..|.++..|+.|++.+|+++..-|..+ .+.++.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            4678999999999999998989999999999999999999996666789999999999999999998888776 567788


Q ss_pred             CcccccCCCCCCC
Q 046028           80 PTSYEVNKGLYGP   92 (139)
Q Consensus        80 ~l~~~~n~~~c~~   92 (139)
                      .+.+.+|++.|..
T Consensus       350 ~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  350 TLNLLSNPFNCNC  362 (498)
T ss_pred             eeehccCcccCcc
Confidence            8889999999964

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.86  E-value=1.3e-10  Score=76.80  Aligned_cols=85  Identities=27%  Similarity=0.371  Sum_probs=52.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~   80 (139)
                      .++++|+.|+++.|++. .+|..|+.++.|+.||+..|+++. .+|+.|..+..|+.+.++.|.+.-.+|+..++++++.
T Consensus        76 ssl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen   76 SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI  154 (264)
T ss_pred             hhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence            34566666677777766 667777777777777776666542 2555565566666666666666655555555555555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+..|.
T Consensus       155 l~lrdnd  161 (264)
T KOG0617|consen  155 LSLRDND  161 (264)
T ss_pred             EeeccCc
Confidence            5555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=3.1e-09  Score=70.81  Aligned_cols=83  Identities=31%  Similarity=0.346  Sum_probs=37.3

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHh-hcCCCCCeEEccCCcccccCC--CCcccCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS   79 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~   79 (139)
                      .+.+|+.||+++|.++ .+. .+..++.|+.|++++|+++ .+...+ ..+++|+.|++++|++...-.  ....+++|+
T Consensus        40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4678999999999998 453 5788999999999999999 454444 468999999999999974322  223577788


Q ss_pred             CcccccCCC
Q 046028           80 PTSYEVNKG   88 (139)
Q Consensus        80 ~l~~~~n~~   88 (139)
                      .+++.+||.
T Consensus       117 ~L~L~~NPv  125 (175)
T PF14580_consen  117 VLSLEGNPV  125 (175)
T ss_dssp             EEE-TT-GG
T ss_pred             eeeccCCcc
Confidence            888888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.75  E-value=9.4e-10  Score=84.21  Aligned_cols=83  Identities=29%  Similarity=0.306  Sum_probs=52.1

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc----ccCCCCC
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST----QLQSFSP   80 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~----~l~~l~~   80 (139)
                      ++|++|+||+|+++...+..|..+..|+.|+|++|+++......|..+.+|+.||+++|.++..+.+..    .+++++.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            456666666666664444556666666666666666664444556667777777777777776665432    4666666


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.||+
T Consensus       397 L~l~gNq  403 (873)
T KOG4194|consen  397 LRLTGNQ  403 (873)
T ss_pred             eeecCce
Confidence            6666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.74  E-value=1.4e-09  Score=71.99  Aligned_cols=79  Identities=28%  Similarity=0.413  Sum_probs=48.3

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+.+++.|-||+|+++ ..|+.+..+.+|+.|++.+|++. .+|.+++.++.|+.+++.-|++.-.+.....++.+..++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            3445566667777776 66666667777777777777776 666667777777777777666663332222444444433


Q ss_pred             c
Q 046028           83 Y   83 (139)
Q Consensus        83 ~   83 (139)
                      +
T Consensus       109 l  109 (264)
T KOG0617|consen  109 L  109 (264)
T ss_pred             c
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.70  E-value=2.3e-09  Score=78.97  Aligned_cols=84  Identities=23%  Similarity=0.268  Sum_probs=68.6

Q ss_pred             CCCCCCcEEeccCCcCCCCCcccc-CCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSF-GNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~   80 (139)
                      ..+..|.+++++.|.+. .+|.+. +++.++..||+.+|++. +.|++++-+.+|..+|+++|.+++.++....+ .++.
T Consensus       225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF  301 (565)
T ss_pred             CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence            34455666677777777 666554 47888999999999999 89999999999999999999999888877777 8888


Q ss_pred             cccccCCC
Q 046028           81 TSYEVNKG   88 (139)
Q Consensus        81 l~~~~n~~   88 (139)
                      +.+.|||.
T Consensus       302 L~leGNPl  309 (565)
T KOG0472|consen  302 LALEGNPL  309 (565)
T ss_pred             hhhcCCch
Confidence            88899975

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.67  E-value=4.5e-09  Score=80.58  Aligned_cols=70  Identities=26%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS   72 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~   72 (139)
                      .+.+++.|+|++|+++..--.++.+++.|+.|+++.|.++...++.+...++|+.|++++|++....+..
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence            4556667777777776555556667777777777777777666666777777777777777776555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.1e-08  Score=56.57  Aligned_cols=59  Identities=32%  Similarity=0.388  Sum_probs=51.1

Q ss_pred             cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccccCC
Q 046028           29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEVNK   87 (139)
Q Consensus        29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~~n~   87 (139)
                      ++|+.|++++|+++...+..|..+++|+.+++++|.++...+..+ .+.+++.+.+.+|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999996655788999999999999999998887664 78888989888875

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.63  E-value=6.3e-09  Score=80.71  Aligned_cols=86  Identities=30%  Similarity=0.311  Sum_probs=61.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~   80 (139)
                      ..+..|+.||||+|++. ..|..+-.-+++-.|+|++|++. .+|. -+.++..|-+||+|+|++...+|...++..+..
T Consensus       100 F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  100 FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence            35666777777777777 77777766677777777777777 5554 356677777888888888877777666777777


Q ss_pred             cccccCCCC
Q 046028           81 TSYEVNKGL   89 (139)
Q Consensus        81 l~~~~n~~~   89 (139)
                      +.+.+||..
T Consensus       178 L~Ls~NPL~  186 (1255)
T KOG0444|consen  178 LKLSNNPLN  186 (1255)
T ss_pred             hhcCCChhh
Confidence            777777653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.59  E-value=1e-08  Score=75.66  Aligned_cols=86  Identities=24%  Similarity=0.370  Sum_probs=65.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch------------------------HHhhcCCCCCe
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS------------------------AQLASLNFLSV   57 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p------------------------~~~~~l~~L~~   57 (139)
                      ..+++|..|+|++|.+. .+|..++.+..|+.++++.|++. .+|                        +.+..+.+|.+
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            34677788888888887 78888888877888888887765 333                        33566778888


Q ss_pred             EEccCCcccccCCCCcccCCCCCcccccCCCC
Q 046028           58 LNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGL   89 (139)
Q Consensus        58 l~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~~   89 (139)
                      +|+.+|.+...+|....+.+++++.+.||+.-
T Consensus       510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchhhCChhhccccceeEEEecCCccC
Confidence            88888888877777778888888888888754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=9.8e-08  Score=49.29  Aligned_cols=36  Identities=42%  Similarity=0.701  Sum_probs=21.8

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCC
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS   42 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~   42 (139)
                      +|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 55555666666666666666665

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.52  E-value=1.3e-08  Score=81.23  Aligned_cols=85  Identities=36%  Similarity=0.466  Sum_probs=57.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccc-cCCCcccCeeccccccCCCcchHH----------------------hhcCCCCCeEE
Q 046028            3 RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQ----------------------LASLNFLSVLN   59 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~----------------------~~~l~~L~~l~   59 (139)
                      ++.+|+.|+|++|++. .+|.. +.++..|+.|++++|+++ .+|..                      +..++.|+.+|
T Consensus       381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence            4567778888888777 56643 667777777777777766 44443                      45566677788


Q ss_pred             ccCCcccccC-CCCcccCCCCCcccccCCCC
Q 046028           60 LSYNNLVGKI-PTSTQLQSFSPTSYEVNKGL   89 (139)
Q Consensus        60 l~~N~l~~~~-p~~~~l~~l~~l~~~~n~~~   89 (139)
                      ++.|+++... |.....++|+.+++.||.++
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            8888776333 33323367888888888753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.39  E-value=4e-08  Score=78.52  Aligned_cols=88  Identities=34%  Similarity=0.327  Sum_probs=69.2

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      +..|+.|.+.+|.++...-+.+...++|+.|+|++|++. .+|. .+.++..|+.|++|+|.++..+.....+..+..+.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence            345788999999999877788889999999999999999 6664 57889999999999999995443333555666666


Q ss_pred             cccCCCCCCC
Q 046028           83 YEVNKGLYGP   92 (139)
Q Consensus        83 ~~~n~~~c~~   92 (139)
                      ..+|...|-+
T Consensus       437 ahsN~l~~fP  446 (1081)
T KOG0618|consen  437 AHSNQLLSFP  446 (1081)
T ss_pred             hcCCceeech
Confidence            6677666643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=4.3e-07  Score=46.86  Aligned_cols=39  Identities=38%  Similarity=0.568  Sum_probs=33.2

Q ss_pred             cccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028           29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK   68 (139)
Q Consensus        29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~   68 (139)
                      ++|+.|++++|+++ .+|..+..+++|+.+++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47899999999999 6787899999999999999999843

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=3.1e-08  Score=63.30  Aligned_cols=84  Identities=24%  Similarity=0.317  Sum_probs=69.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCC-cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      +..+|+.++|++|.+. ..|+.|... +.++.+++++|+++ .+|.++..++.|+.++++.|.+...+....++.++..+
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence            3456788899999999 888887654 58999999999999 89999999999999999999999776666677777777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      +..+|..
T Consensus       129 ds~~na~  135 (177)
T KOG4579|consen  129 DSPENAR  135 (177)
T ss_pred             cCCCCcc
Confidence            7666643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.37  E-value=6e-08  Score=69.47  Aligned_cols=63  Identities=33%  Similarity=0.372  Sum_probs=50.3

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI   69 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~   69 (139)
                      .+.|+++|||+|.|+ .+..+.+-++.++.|++++|.+. .+. .+..+.+|+.+|+++|.++...
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~  345 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECV  345 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhh
Confidence            456888899999888 77778888888899999999887 443 3778888889999988887443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.24  E-value=2.4e-07  Score=61.80  Aligned_cols=82  Identities=32%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             CCCCCcEEeccCCcCCCCCccccC-CCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFG-NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      +..++++|+|++|.|+ .+. .+. .+.+|+.|++++|.++ .+. .+..+..|+.|++++|+++...+... .++++..
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3456889999999998 543 455 5789999999999999 444 47788999999999999995433221 4677888


Q ss_pred             cccccCCC
Q 046028           81 TSYEVNKG   88 (139)
Q Consensus        81 l~~~~n~~   88 (139)
                      +.+.+|..
T Consensus        93 L~L~~N~I  100 (175)
T PF14580_consen   93 LYLSNNKI  100 (175)
T ss_dssp             EE-TTS--
T ss_pred             EECcCCcC
Confidence            88877754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.20  E-value=5.3e-08  Score=71.62  Aligned_cols=63  Identities=25%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeec-cccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLD-LSTNNLSGKISAQLASLNFLSVLNLSYNNL   65 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~-l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l   65 (139)
                      .+.+|++||||+|.|+-.-|..|.+++++..|- +++|+|+....+.|..+.+++.+.+.-|++
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i  152 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI  152 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence            344445555555555444444444444443332 222444432223344444444444333333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.09  E-value=1.4e-06  Score=71.02  Aligned_cols=83  Identities=33%  Similarity=0.413  Sum_probs=69.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..++.|+.|||++|.--+.+|..++.+-+|++|++++..++ .+|..+.++..|.+|++.++.-...++... .+.+|+.
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            45889999999998877799999999999999999999999 899999999999999999887655555444 3677776


Q ss_pred             ccccc
Q 046028           81 TSYEV   85 (139)
Q Consensus        81 l~~~~   85 (139)
                      +.+..
T Consensus       647 L~l~~  651 (889)
T KOG4658|consen  647 LRLPR  651 (889)
T ss_pred             EEeec
Confidence            66543

>PLN03210 Resistant to P

Probab=98.08  E-value=1.4e-05  Score=67.16  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+.+|+.+++++|...+.+|....+.++..+.
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~  710 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN  710 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence            456666777766543335553 5666777777777665555677777777778888887764444556555566666666


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.++.
T Consensus       711 Lsgc~  715 (1153)
T PLN03210        711 LSGCS  715 (1153)
T ss_pred             CCCCC
Confidence            66554

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.07  E-value=4.9e-07  Score=70.53  Aligned_cols=91  Identities=27%  Similarity=0.399  Sum_probs=62.9

Q ss_pred             CCCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            3 RFVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      +|++|+.|.+.+|+++ -.+|..++.+.+|+.+..++|.+. ..|..++.+..|+.|.++.|++. ..|... -+..+..
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v  366 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV  366 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence            3455555555555543 245666666666666666666666 67778888888888888888888 455554 4567788


Q ss_pred             cccccCCCCCCCCCC
Q 046028           81 TSYEVNKGLYGPPLT   95 (139)
Q Consensus        81 l~~~~n~~~c~~p~~   95 (139)
                      +++..|+.+--+|.+
T Consensus       367 LDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  367 LDLRENPNLVMPPKP  381 (1255)
T ss_pred             eeccCCcCccCCCCc
Confidence            999999988766544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.00  E-value=1.7e-06  Score=62.21  Aligned_cols=60  Identities=27%  Similarity=0.332  Sum_probs=42.3

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      .++++.|++|+|++. .. +.+..+.+|+.||+++|.++ .+.++-..+.+.+++.++.|.+.
T Consensus       306 ~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             ccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh
Confidence            577889999999987 33 33788899999999999887 45554444555555555555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.99  E-value=3.1e-07  Score=72.36  Aligned_cols=85  Identities=33%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH----------------------HhhcCCCCCeEEccC
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA----------------------QLASLNFLSVLNLSY   62 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~----------------------~~~~l~~L~~l~l~~   62 (139)
                      +.++.|||++|+++..  +.+..+++|++||++.|+++ .+|.                      .+.++.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            4455556666655522  14555555556666655554 3332                      245566777778888


Q ss_pred             CcccccC--CCCcccCCCCCcccccCCCCCCC
Q 046028           63 NNLVGKI--PTSTQLQSFSPTSYEVNKGLYGP   92 (139)
Q Consensus        63 N~l~~~~--p~~~~l~~l~~l~~~~n~~~c~~   92 (139)
                      |-+.+--  ...+.+..|+.+.+.|||..|.+
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            7776321  12224556677889999988853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.99  E-value=8e-07  Score=68.23  Aligned_cols=81  Identities=25%  Similarity=0.310  Sum_probs=43.9

Q ss_pred             CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccccC
Q 046028            7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVN   86 (139)
Q Consensus         7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~n   86 (139)
                      |..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|.++.. -.|..||++.|++...+-....++.|+.+.++.|
T Consensus       168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence            334444444444 44444444444444444444444 34444442 2355777888887754444457777777878777


Q ss_pred             CCCC
Q 046028           87 KGLY   90 (139)
Q Consensus        87 ~~~c   90 (139)
                      |..-
T Consensus       245 PLqS  248 (722)
T KOG0532|consen  245 PLQS  248 (722)
T ss_pred             CCCC
Confidence            7543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.85  E-value=1.3e-05  Score=64.45  Aligned_cols=75  Identities=27%  Similarity=0.199  Sum_probs=37.6

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEV   85 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (139)
                      +|+.|++++|.++ .+|...   .+|+.|++++|+++ .+|...   .+|+.+++++|+++..+.....+..+..+.+.+
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             ccceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCC
Confidence            4566666666666 344322   34555666666665 344322   234555555565553222222444555555555


Q ss_pred             CCC
Q 046028           86 NKG   88 (139)
Q Consensus        86 n~~   88 (139)
                      |+.
T Consensus       455 N~L  457 (788)
T PRK15387        455 NPL  457 (788)
T ss_pred             CCC
Confidence            543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.82  E-value=2.8e-05  Score=52.81  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc--ccCCCCcccCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV--GKIPTSTQLQSFSPTS   82 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~--~~~p~~~~l~~l~~l~   82 (139)
                      .+...+||+.|.+. .+ +.|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|.+.  +.+.....++.|+.+.
T Consensus        42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45667899999886 33 45788899999999999999766665555678999999999886  3333444667788888


Q ss_pred             cccCCC
Q 046028           83 YEVNKG   88 (139)
Q Consensus        83 ~~~n~~   88 (139)
                      +.+|+.
T Consensus       120 ll~Npv  125 (233)
T KOG1644|consen  120 LLGNPV  125 (233)
T ss_pred             ecCCch
Confidence            888864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.76  E-value=2e-05  Score=63.51  Aligned_cols=59  Identities=31%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI   69 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~   69 (139)
                      +|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+..+.+|+.+++++|.+++..
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence            3445555555554 334321   23444555555554 44555555555555555555555443

>PLN03210 Resistant to P

Probab=97.75  E-value=6.8e-05  Score=63.14  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~   82 (139)
                      +.+|+.|++++|++. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|... .+.+++.+.
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            456778888888877 6777777888888888887654446664 6777888888888775544555543 667777777


Q ss_pred             cccCCCCC
Q 046028           83 YEVNKGLY   90 (139)
Q Consensus        83 ~~~n~~~c   90 (139)
                      +.++..+-
T Consensus       688 L~~c~~L~  695 (1153)
T PLN03210        688 MSRCENLE  695 (1153)
T ss_pred             CCCCCCcC
Confidence            76654443

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.73  E-value=1.9e-05  Score=58.87  Aligned_cols=79  Identities=34%  Similarity=0.467  Sum_probs=54.5

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEV   85 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (139)
                      +|+.|+++.|.+. .+|..+..++.|+.|++++|+++ .+|........|+.+++++|++...++.......+..+.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence            6777888888877 66666777888888888888887 666655567777888888888875444322333455565655


Q ss_pred             C
Q 046028           86 N   86 (139)
Q Consensus        86 n   86 (139)
                      |
T Consensus       219 N  219 (394)
T COG4886         219 N  219 (394)
T ss_pred             C
Confidence            5

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.71  E-value=7.5e-05  Score=60.20  Aligned_cols=54  Identities=30%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      |+.|++++|.++ .+|..+.  .+|+.|++++|++. .+|..+.  .+|+.|++++|.+.
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            444444444444 3333221  23444444444444 3443332  24555566655555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.68  E-value=1.5e-05  Score=59.42  Aligned_cols=83  Identities=30%  Similarity=0.484  Sum_probs=42.6

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .++.|+.|++++|++. .+|.....++.|+.|++++|+++ .+|........|+.+.+++|.+...+.....+..+..+.
T Consensus       161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence            4555666666666665 55554445556666666666666 455544444455666666664333333333333333333


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      ...|+
T Consensus       239 l~~n~  243 (394)
T COG4886         239 LSNNK  243 (394)
T ss_pred             cCCce
Confidence            33443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.65  E-value=3.2e-06  Score=66.81  Aligned_cols=60  Identities=35%  Similarity=0.398  Sum_probs=52.1

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK   68 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~   68 (139)
                      +|.+.+.++|++. ....++.-++.+++|||++|+++. . +.+..+..|++||+++|++.-.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~v  224 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRHV  224 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhccc
Confidence            4667889999998 777888899999999999999983 3 3889999999999999999843

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.63  E-value=1e-05  Score=58.20  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=16.1

Q ss_pred             cccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028           29 KHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus        29 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ++|+.|++++|.+++.    +...+..+.+|+.+++++|.+.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            4444444444444421    1122333344555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.59  E-value=8.5e-06  Score=62.77  Aligned_cols=79  Identities=30%  Similarity=0.357  Sum_probs=58.2

Q ss_pred             CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccccC
Q 046028            7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVN   86 (139)
Q Consensus         7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~n   86 (139)
                      |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++++.+|+.+.+..|++...++... -..|..++|..|
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN  221 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN  221 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence            667777788877 77777777777888888888887 777778888888888888888875555444 345666777766


Q ss_pred             CC
Q 046028           87 KG   88 (139)
Q Consensus        87 ~~   88 (139)
                      +.
T Consensus       222 ki  223 (722)
T KOG0532|consen  222 KI  223 (722)
T ss_pred             ce
Confidence            54

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.59  E-value=1.9e-05  Score=56.90  Aligned_cols=83  Identities=23%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             CCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccCCC-----
Q 046028            5 VSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKIPT-----   71 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~p~-----   71 (139)
                      ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..+...++|+.+++++|.+.+....     
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            5677788888777742    223455566777788877777632    233344556777777777776522211     


Q ss_pred             CcccCCCCCcccccCC
Q 046028           72 STQLQSFSPTSYEVNK   87 (139)
Q Consensus        72 ~~~l~~l~~l~~~~n~   87 (139)
                      ....++++.+.+.+|.
T Consensus       217 ~~~~~~L~~L~ls~n~  232 (319)
T cd00116         217 LASLKSLEVLNLGDNN  232 (319)
T ss_pred             hcccCCCCEEecCCCc
Confidence            1134556666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.53  E-value=5.7e-05  Score=56.91  Aligned_cols=61  Identities=34%  Similarity=0.433  Sum_probs=34.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      .+++|+.|++..|.+. .+...+..+.+|++|++++|.++...  .+..+..|+.|++++|.++
T Consensus        93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence            3555666666666666 33333555666666666666666332  2344445666666666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.51  E-value=7.1e-06  Score=52.66  Aligned_cols=64  Identities=25%  Similarity=0.334  Sum_probs=56.5

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI   69 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~   69 (139)
                      ++.++.+++++|.++ .+|.++..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+....
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence            346788999999999 99999999999999999999999 78888888999999999998887433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.47  E-value=0.00019  Score=57.87  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=49.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++++.|++++|.++ .+|..+.  .+|+.|++++|+++ .+|..+.  .+|+.+++++|.+.. +|... ...+..+.+.
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l-~s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERL-PSALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhH-hCCCCEEECc
Confidence            35778888888888 6676544  47888888888888 5676543  478889999998884 34322 1234444444


Q ss_pred             cC
Q 046028           85 VN   86 (139)
Q Consensus        85 ~n   86 (139)
                      +|
T Consensus       271 ~N  272 (754)
T PRK15370        271 HN  272 (754)
T ss_pred             CC
Confidence            44

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.15  E-value=0.0002  Score=58.76  Aligned_cols=86  Identities=27%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             CCCcEEeccCCc--CCCCCcc-ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            5 VSLYALNLSHNA--LTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         5 ~~L~~L~Ls~N~--l~g~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ++|++|-+..|.  +. .++. .|..++.|+.||+++|.--+.+|..++++.+|++|++++..++..|.....++.|..+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            468888888886  55 4554 4788999999999988776799999999999999999999999665555577888888


Q ss_pred             ccccCCCCCC
Q 046028           82 SYEVNKGLYG   91 (139)
Q Consensus        82 ~~~~n~~~c~   91 (139)
                      ++..+..+..
T Consensus       624 nl~~~~~l~~  633 (889)
T KOG4658|consen  624 NLEVTGRLES  633 (889)
T ss_pred             cccccccccc
Confidence            8776655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.09  E-value=0.00017  Score=31.35  Aligned_cols=20  Identities=65%  Similarity=0.776  Sum_probs=11.8

Q ss_pred             CCcEEeccCCcCCCCCccccC
Q 046028            6 SLYALNLSHNALTGSIPSSFG   26 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~   26 (139)
                      +|+.||+++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566666666666 5555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.76  E-value=0.00038  Score=52.49  Aligned_cols=82  Identities=33%  Similarity=0.394  Sum_probs=61.3

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +..+..+++..|.+. .+-..+..+.+|+.+++.+|++. .+...+..+.+|+++++++|.++...+ ...+..+..+.+
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence            455666778888887 44455788899999999999998 444437788999999999999995443 334455777777


Q ss_pred             ccCCC
Q 046028           84 EVNKG   88 (139)
Q Consensus        84 ~~n~~   88 (139)
                      .+|..
T Consensus       148 ~~N~i  152 (414)
T KOG0531|consen  148 SGNLI  152 (414)
T ss_pred             ccCcc
Confidence            77753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.001  Score=46.76  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             CCCCcEEeccCC--cCCCCCccccCCCcccCeeccccccCC
Q 046028            4 FVSLYALNLSHN--ALTGSIPSSFGNLKHIESLDLSTNNLS   42 (139)
Q Consensus         4 l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~l~~n~l~   42 (139)
                      |++|+.|.+|.|  ++.+.++.-...+++|++++++.|+++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            444555555555  444444443344455555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.53  E-value=0.003  Score=43.16  Aligned_cols=82  Identities=24%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch--HHhhcCCCCCeEEccCCcccccCCCC-----c
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS--AQLASLNFLSVLNLSYNNLVGKIPTS-----T   73 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~l~l~~N~l~~~~p~~-----~   73 (139)
                      |..++.|.+|.+++|+|+..-|.--..++.|..|.+.+|++. .+-  ..+..++.|+.+.+-+|..+.. +..     .
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEE
Confidence            345788999999999999666655556788999999999987 332  2356788999999999888732 222     1


Q ss_pred             ccCCCCCcccc
Q 046028           74 QLQSFSPTSYE   84 (139)
Q Consensus        74 ~l~~l~~l~~~   84 (139)
                      .+++++.++|.
T Consensus       138 klp~l~~LDF~  148 (233)
T KOG1644|consen  138 KLPSLRTLDFQ  148 (233)
T ss_pred             ecCcceEeehh
Confidence            34555555553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.00078  Score=29.18  Aligned_cols=18  Identities=50%  Similarity=0.726  Sum_probs=10.2

Q ss_pred             cCeeccccccCCCcchHHh
Q 046028           31 IESLDLSTNNLSGKISAQL   49 (139)
Q Consensus        31 L~~L~l~~n~l~~~~p~~~   49 (139)
                      |++||+++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            556666666666 555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.0025  Score=44.87  Aligned_cols=60  Identities=33%  Similarity=0.448  Sum_probs=44.7

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccc--cCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN--NLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ..|+.+.+.+..++ .+ ..|..|++|+.|.++.|  +.++.++.-...+++|++++++.|++.
T Consensus        43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34555555555555 22 35778899999999999  666666666666799999999999987

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0017  Score=49.01  Aligned_cols=62  Identities=27%  Similarity=0.370  Sum_probs=40.5

Q ss_pred             CCCCcEEeccCCcCCCCCc--cccCCCcccCeeccccccCCCc-chHH-----hhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIP--SSFGNLKHIESLDLSTNNLSGK-ISAQ-----LASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~l~~n~l~~~-~p~~-----~~~l~~L~~l~l~~N~l~   66 (139)
                      ++.|++|||++|.+- ..+  ...+.++.|+.|+++.+.+... .|+.     ...+++|++|+++.|++.
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            355777888877765 444  3456677777777777776532 2222     344677888888888885

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.18  E-value=0.0032  Score=25.46  Aligned_cols=13  Identities=54%  Similarity=0.692  Sum_probs=6.1

Q ss_pred             CCcEEeccCCcCC
Q 046028            6 SLYALNLSHNALT   18 (139)
Q Consensus         6 ~L~~L~Ls~N~l~   18 (139)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666655

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.50  E-value=0.00041  Score=48.47  Aligned_cols=82  Identities=18%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      ....+.||++.|++. .+-..|..++.+..|+++.|.+. ..|..+.+...++.+++..|..+..+-...+.+.++.+..
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            344566777777776 55556666777777777777777 6677777766777777777777654444445555555554


Q ss_pred             ccCC
Q 046028           84 EVNK   87 (139)
Q Consensus        84 ~~n~   87 (139)
                      -+|+
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            4443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.0033  Score=47.46  Aligned_cols=62  Identities=37%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccc-cCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNN   64 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~   64 (139)
                      .|++|+.|+++.|++.-..... -..+++|+.|.++.+.++...-. -...+++|..+++.+|.
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            5788888888888876332222 12456677777777776633222 23345666666666663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.15  E-value=0.021  Score=25.48  Aligned_cols=14  Identities=43%  Similarity=0.572  Sum_probs=7.9

Q ss_pred             CCCcEEeccCCcCC
Q 046028            5 VSLYALNLSHNALT   18 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (139)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.15  E-value=0.021  Score=25.48  Aligned_cols=14  Identities=43%  Similarity=0.572  Sum_probs=7.9

Q ss_pred             CCCcEEeccCCcCC
Q 046028            5 VSLYALNLSHNALT   18 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (139)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.017  Score=42.02  Aligned_cols=64  Identities=33%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCccc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +|+.|++|+++.|.+...+-..-..+.+|+.|-+++..+... ....+..++.++.++++.|.+.
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            355566666666665532221112344555555555444322 1223444555666666666443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.0035  Score=45.06  Aligned_cols=65  Identities=23%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH--HhhcCCCCCeEEccCCcccccCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA--QLASLNFLSVLNLSYNNLVGKIP   70 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~p   70 (139)
                      +++.|+.|-||-|+|+..-  .+..++.|+.|+|..|.|. .+..  .+.++++|+.|++..|...|.-+
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            5788999999999998443  3678899999999999998 3332  46788999999999998876544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.79  E-value=0.058  Score=43.62  Aligned_cols=60  Identities=23%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNN   64 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~   64 (139)
                      ++++|..||+|+-.++ .+ ..++.+++|+.|-+.+=.+.. ..-..+.++++|+.||+|...
T Consensus       171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            3455555555555554 22 344555555555444444431 111235556666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.73  E-value=0.015  Score=42.23  Aligned_cols=60  Identities=28%  Similarity=0.364  Sum_probs=37.7

Q ss_pred             CCCcEEeccCCcCCCCCc---cccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028            5 VSLYALNLSHNALTGSIP---SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL   65 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l   65 (139)
                      +.++++||.+|.++ ...   ..+.+|+.|+.|+++.|+++..+...-....+|+.+-+.+..+
T Consensus        71 ~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   71 TDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            45677888888876 322   3345778888888888887744433223455666766665544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.00  E-value=0.0017  Score=45.47  Aligned_cols=61  Identities=15%  Similarity=0.118  Sum_probs=52.7

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ++.+..+|++.|.+. .+|..++++..+..+++-.|..+ ..|.++...++++.+++..|.+.
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            345667899999998 89999999999999999999988 88989999999999888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.25  E-value=0.055  Score=43.78  Aligned_cols=81  Identities=19%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             CCCCcEEeccCCcCCC-CCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc--cCCCCcccCCCCC
Q 046028            4 FVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG--KIPTSTQLQSFSP   80 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~~~l~~l~~   80 (139)
                      |++|+.|.+++-.+.. .+-....++++|..||+++..++- + ..++.+.+|+.|.+.+=.+..  .+-..+.++.|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4566666666554431 122334455666666666666652 2 445566666665554433331  1112345666666


Q ss_pred             cccccC
Q 046028           81 TSYEVN   86 (139)
Q Consensus        81 l~~~~n   86 (139)
                      +++...
T Consensus       225 LDIS~~  230 (699)
T KOG3665|consen  225 LDISRD  230 (699)
T ss_pred             eecccc
Confidence            666443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.88  E-value=0.12  Score=23.28  Aligned_cols=18  Identities=56%  Similarity=0.708  Sum_probs=11.3

Q ss_pred             CCCcEEeccCCcCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSIPS   23 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~   23 (139)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35666777777766 5553

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.75  E-value=0.16  Score=22.84  Aligned_cols=14  Identities=36%  Similarity=0.527  Sum_probs=8.9

Q ss_pred             CCCcEEeccCCcCC
Q 046028            5 VSLYALNLSHNALT   18 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (139)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.84  E-value=0.097  Score=38.70  Aligned_cols=62  Identities=29%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             CCCcEEeccCCcCC--CC--CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028            5 VSLYALNLSHNALT--GS--IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~--g~--~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +.|+.+.++.|.+.  |.  +-..+..+++|+.||+.+|.++..    +-..+..+++|+.++++++.++
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            34555555555543  11  112344555555555555555422    1122344455555555554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.53  E-value=0.14  Score=37.91  Aligned_cols=63  Identities=22%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      -++|++++.+.|++...    +...|+..+.|+.+.+..|.+...    +-..+..+++|+.||+..|-|+
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            34566666666666411    112344455666666666655411    1123455666666666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.36  E-value=0.35  Score=36.84  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCC
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      +.+++.|++++|.++ .+|.   -..+|+.|.+++ +.+. .+|+.+.  .+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            467788888888777 5562   223567777665 3333 4454331  35555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.14  E-value=0.54  Score=28.99  Aligned_cols=59  Identities=12%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      .+.++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+..+.+++.+.+..
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            3455777777764 455344455777778888888775 5534445567776788887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.99  E-value=0.061  Score=23.42  Aligned_cols=10  Identities=50%  Similarity=0.637  Sum_probs=3.1

Q ss_pred             CcEEeccCCc
Q 046028            7 LYALNLSHNA   16 (139)
Q Consensus         7 L~~L~Ls~N~   16 (139)
                      |+.|++++|.
T Consensus         4 L~~L~l~~n~   13 (24)
T PF13516_consen    4 LETLDLSNNQ   13 (24)
T ss_dssp             -SEEE-TSSB
T ss_pred             CCEEEccCCc
Confidence            3333443333

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.90  E-value=0.46  Score=29.31  Aligned_cols=60  Identities=25%  Similarity=0.344  Sum_probs=37.6

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      ..+++++.+.+..+ +...-...|..+..++.+.+.+ .+.......+..+..++.+++..+
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            34567899999876 6634445688888899999976 444234456777889999998765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.90  E-value=0.28  Score=22.29  Aligned_cols=14  Identities=50%  Similarity=0.536  Sum_probs=8.6

Q ss_pred             CCCcEEeccCCcCC
Q 046028            5 VSLYALNLSHNALT   18 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (139)
                      ++|+.|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=89.64  E-value=0.4  Score=34.77  Aligned_cols=63  Identities=27%  Similarity=0.352  Sum_probs=44.3

Q ss_pred             CCCCCcEEeccCCcCCCCCccccC----CCcccCeeccccccCCCcchH-----H---------hhcCCCCCeEEccCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFG----NLKHIESLDLSTNNLSGKISA-----Q---------LASLNFLSVLNLSYNN   64 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~----~l~~L~~L~l~~n~l~~~~p~-----~---------~~~l~~L~~l~l~~N~   64 (139)
                      ++++|+..+||.|-+....|+.+.    +-+.|.+|.+++|.+- .+.+     +         ...-+.|+.+....|+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            578899999999999888876544    4577999999999875 2221     1         1234566777777776


Q ss_pred             cc
Q 046028           65 LV   66 (139)
Q Consensus        65 l~   66 (139)
                      +.
T Consensus       169 le  170 (388)
T COG5238         169 LE  170 (388)
T ss_pred             hc
Confidence            64

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=0.026  Score=40.70  Aligned_cols=56  Identities=29%  Similarity=0.349  Sum_probs=43.6

Q ss_pred             CCCCCcEEeccCCcCCCCCcc--ccCCCcccCeeccccccCCCcchHH-----hhcCCCCCeEE
Q 046028            3 RFVSLYALNLSHNALTGSIPS--SFGNLKHIESLDLSTNNLSGKISAQ-----LASLNFLSVLN   59 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~-----~~~l~~L~~l~   59 (139)
                      .+++|++|+|..|.|. .+.+  .+.++++|+.|.|..|...|.-+..     +.-+++|+.||
T Consensus        61 rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   61 RCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            4577889999999998 4443  4689999999999999998776654     45577777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=84.60  E-value=1.5  Score=33.62  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=17.0

Q ss_pred             CCcEEeccC-CcCCCCCccccCCCcccCeeccccc
Q 046028            6 SLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTN   39 (139)
Q Consensus         6 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n   39 (139)
                      +|+.|++++ +.++ .+|..+.  .+|+.|++++|
T Consensus        73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            466777765 3343 5554332  35666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-10

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
           +G    L+ LNL HN ++GSIP   G+L+ +  LDLS+N L G+I               
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 61  XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
                 G IP   Q ++F P  +  N GL G PL
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
           +G    L+ LNL HN ++GSIP   G+L+ +  LDLS+N L G+I               
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 61  XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
                 G IP   Q ++F P  +  N GL G PL
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (340), Expect = 8e-38
 Identities = 40/95 (42%), Positives = 58/95 (61%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G    L+ LNL HN ++GSIP   G+L+ +  LDLS+N L G+I   +++L  L+ ++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLT 95
           S NNL G IP   Q ++F P  +  N GL G PL 
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 4e-19
 Identities = 29/67 (43%), Positives = 36/67 (53%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L L +N  TG IP +  N   + SL LS N LSG I + L SL+ L  L L  N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 66  VGKIPTS 72
            G+IP  
Sbjct: 455 EGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +     L +L+LS N L+G+IPSS G+L  +  L L  N L G+I  +L  +  L  L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 61  SYNNLVGKIPTS 72
            +N+L G+IP+ 
Sbjct: 474 DFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 26/72 (36%), Positives = 40/72 (55%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +G    L  L L  N L G IP     +K +E+L L  N+L+G+I + L++   L+ ++L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 61  SYNNLVGKIPTS 72
           S N L G+IP  
Sbjct: 498 SNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 8e-18
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           + R V+L  L++S N  +  IP   G+   ++ LD+S N LSG  S  +++   L +LN+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 61  SYNNLVGKIPTS--TQLQSFS 79
           S N  VG IP      LQ  S
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLS 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 8e-18
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNL 60
           G   +L  L+LS N   G++P  FG+   +ESL LS+NN SG++    L  +  L VL+L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 61  SYNNLVGKIPTS 72
           S+N   G++P S
Sbjct: 351 SFNEFSGELPES 362

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    +L  L L  N LTG IPS   N  ++  + LS N L+G+I   +  L  L++L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 61  SYNNLVGKIPTS 72
           S N+  G IP  
Sbjct: 522 SNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 27/72 (37%), Positives = 40/72 (55%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    +L  ++LS+N LTG IP   G L+++  L LS N+ SG I A+L     L  L+L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 61  SYNNLVGKIPTS 72
           + N   G IP +
Sbjct: 546 NTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G   +L  L++S N L+G    +      ++ L++S+N   G I      L  L  L+L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 277

Query: 62  YNNLVGKIPTS 72
            N   G+IP  
Sbjct: 278 ENKFTGEIPDF 288

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
              SL  L+L+ N  TG IP    G    +  LDLS N+  G +     S + L  L LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 62  YNNLVGKIPTST 73
            NN  G++P  T
Sbjct: 327 SNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGN--LKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           SL  L+LS N  +G I  +        ++ L L  N  +GKI   L++ + L  L+LS+N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 64  NLVGKIPTS 72
            L G IP+S
Sbjct: 429 YLSGTIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
                 L  L +S N ++G +        ++E LD+S+NN S  I   L   + L  L++
Sbjct: 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230

Query: 61  SYNNLVGKIPTS 72
           S N L G    +
Sbjct: 231 SGNKLSGDFSRA 242

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 2   GRFVSLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNF-LSVLN 59
           G    L +L LS N  +G +P  +   ++ ++ LDLS N  SG++   L +L+  L  L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 60  LSYNNLVGKIPTS 72
           LS NN  G I  +
Sbjct: 375 LSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA--QLASLNFLSVLN 59
                L +L LS++ + GS+   F     + SLDLS N+LSG ++    L S + L  LN
Sbjct: 74  LSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 60  LSYNNLVGKIPTSTQLQ 76
           +S N L      S  L+
Sbjct: 133 VSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPS--SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVL 58
               SL +L+LS N+L+G + +  S G+   ++ L++S+N L           LN L VL
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 59  NLSYNNLVGKIPTS 72
           +LS N++ G     
Sbjct: 157 DLSANSISGANVVG 170

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
                  +     G        L      ++++    G  S    +   +  L++SYN L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 66  VGKIPTS-TQLQS 77
            G IP     +  
Sbjct: 645 SGYIPKEIGSMPY 657

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 2   GRFVSLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLA---SLNFLSV 57
           G    L  LN+S N L      S    L  +E LDLS N++SG              L  
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 58  LNLSYNNLVGKIPTS--TQLQSFS 79
           L +S N + G +  S    L+   
Sbjct: 183 LAISGNKISGDVDVSRCVNLEFLD 206

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            +  S+   +   N    ++ SS  +L  +ESL LS ++++G +S        L+ L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 62  YNNLVGKIPTSTQLQSFS 79
            N+L G + T T L S S
Sbjct: 109 RNSLSGPVTTLTSLGSCS 126

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +GR  +L  L LS+N+ +G+IP+  G+ + +  LDL+TN  +G I A +   +      +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 61  SYNNLVGKIPTS 72
           + N + GK    
Sbjct: 566 AANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G   SL  L+L+ N   G+IP++        S  ++ N ++GK    + +       + +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 62  YN--NLVGKIPTS 72
            N     G     
Sbjct: 591 GNLLEFQGIRSEQ 603

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 27  NLKHIESLDLSTNNLS---GKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 77
               + S+DLS+  L+     +S+ L SL  L  L LS +++ G +       S
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (267), Expect = 6e-29
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
            G   +   ++L+ N+L   +    G  K++  LDL  N + G +   L  L FL  LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
           S+NNL G+IP    LQ F  ++Y  NK L G PL
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 2e-19
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            +   L+ L ++H  ++G+IP     +K + +LD S N LSG +   ++SL  L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 62  YNNLVGKIPTS 72
            N + G IP S
Sbjct: 158 GNRISGAIPDS 168

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 1e-18
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLS-VLNL 60
            +  +L  L+ S+NAL+G++P S  +L ++  +    N +SG I     S + L   + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 61  SYNNLVGKIPTS 72
           S N L GKIP +
Sbjct: 182 SRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 4e-18
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 1   MGRFVSLY-ALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
            G F  L+ ++ +S N LTG IP +F NL  +  +DLS N L G  S    S      ++
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 60  LSYNNLVGKIPTSTQLQS 77
           L+ N+L   +      ++
Sbjct: 228 LAKNSLAFDLGKVGLSKN 245

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 4e-18
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 2   GRFVSLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
                L  L +   N L G IP +   L  +  L ++  N+SG I   L+ +  L  L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 61  SYNNLVGKIPTS 72
           SYN L G +P S
Sbjct: 133 SYNALSGTLPPS 144

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 5e-15
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 1   MGRFVSLYALNLSHNALTGS--IPSSFGNLKHIESLDLS-TNNLSGKISAQLASLNFLSV 57
             +   +  L+LS   L     IPSS  NL ++  L +   NNL G I   +A L  L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 58  LNLSYNNLVGKIPTS 72
           L +++ N+ G IP  
Sbjct: 106 LYITHTNVSGAIPDF 120

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG--KISAQLASLNFLSVLNLS-YNNLV 66
           +  +    G +  +      + +LDLS  NL     I + LA+L +L+ L +   NNLV
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 67 GKIPTS 72
          G IP +
Sbjct: 91 GPIPPA 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+LS   L    P++F +L  ++ L++S NN     +     LN L VL+ S N++
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 66  VGKIPTSTQ 74
           +       Q
Sbjct: 531 MTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 19/69 (27%), Positives = 28/69 (40%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            S   L+LS N L      SF +   ++ LDLS   +         SL+ LS L L+ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64 NLVGKIPTS 72
           +      +
Sbjct: 87 PIQSLALGA 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 15/71 (21%), Positives = 26/71 (36%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             F  L  L+LS   +      ++ +L H+ +L L+ N +        + L+ L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  YNNLVGKIPTS 72
             NL       
Sbjct: 109 ETNLASLENFP 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L+ N +      +F  L  ++ L     NL+   +  +  L  L  LN+++N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 66  VG 67
             
Sbjct: 137 QS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASL-NFLSVLNL 60
               SL  LN+SHN         +  L  ++ LD S N++      +L    + L+ LNL
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 61  SYNNLVGKIP 70
           + N+      
Sbjct: 551 TQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 6   SLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L+  H+ L      S F +L+++  LD+S  +     +     L+ L VL ++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 65  LVGKIPTST 73
                    
Sbjct: 457 FQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSI-PSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           SL  L ++ N+   +  P  F  L+++  LDLS   L         SL+ L VLN+S+NN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 65  LVGKIPTS 72
                   
Sbjct: 506 FFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALT--GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           SL  L+LS N L+  G    S      ++ LDLS N +   +S+    L  L  L+  ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 64  NLVGKIPTST 73
           NL      S 
Sbjct: 407 NLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 6   SLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSV----LNL 60
           +L  LN++HN +    +P  F NL ++E LDLS+N +       L  L+ + +    L+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 61  SYNNLVGKIPTS 72
           S N +    P +
Sbjct: 185 SLNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIE----SLDLSTNNLSGKISAQLASLNFLS 56
                +L  L+LS N +     +    L  +     SLDLS N ++         +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203

Query: 57  VLNLSYNNLVGKIPTST 73
            L L  N     +  + 
Sbjct: 204 KLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKISAQ--LASLNFLSV 57
                SL  L+ S N +  S      +    +  L+L+ N+ +     Q  L  +     
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 58  LNLSYNNLVGKIPTS---TQLQSFSPTSYEVNK 87
           L +    +    P+      + S + T  ++NK
Sbjct: 574 LLVEVERMECATPSDKQGMPVLSLNITC-QMNK 605

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS--GKISAQLASLNFLSVLNLSYNNLVG 67
             L+  +  G    S  +L  +E LDLS N LS  G  S        L  L+LS+N ++ 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 68  KIPTSTQLQS 77
                  L+ 
Sbjct: 388 MSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 4   FVSLYALNLSHNALT------GSIPSSFGNLKHIESLDLSTNNLSGKIS-AQLASLNFLS 56
              L  L +    L         I   F  L ++ S  L +  +      +       L 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 57  VLNLSYNNLVGKIPTSTQLQSFS 79
           ++N  +         S +  +F+
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFT 333

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                 L L +            +LK      L+  +  G  +     L  L  L+LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 64  NLVGKIPTSTQL 75
            L  K   S   
Sbjct: 358 GLSFKGCCSQSD 369

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             ++ + +L    +      S+      + L+L         + +L SL  L+  +    
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 64  NL 65
           N 
Sbjct: 339 NA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKI---SAQLASLNFLSVLNLS 61
            L+ L L +N  + ++       L  +E   L       +        ++L  L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 62  YNNL 65
              L
Sbjct: 261 EFRL 264

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L+ LNL  N         F +L  ++ +DL  NNL+   ++   +   L  LNL  N +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 66  VGKIPTS 72
                  
Sbjct: 597 TSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            ++  LNL+HN L     ++F     + SLD+  N +S         L  L VLNL +N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 64 NLVGKIPTS 72
           L      +
Sbjct: 84 ELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
            L+ LNL+ N ++     +F  L H+E LDL  N +  +++ Q    L  +  + LSYN 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 65  LVGKIPTS 72
            +     S
Sbjct: 442 YLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  LNL HN L+     +F    ++  L L +N++    +        L  L+LS+N L
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 66  VGKIPTS 72
                 +
Sbjct: 134 SSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA-SLNFLSVLNLSYNN 64
            L  ++L  N L     S F N   ++SL+L  N ++         +   L+ L++ +N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 65  LVGKIPTSTQLQSF 78
                 +     ++
Sbjct: 621 FDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            R+  L +L++  N ++   P     L  ++ L+L  N LS       A    L+ L+L 
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 62  YNNLVGKIPTS 72
            N++       
Sbjct: 106 SNSIQKIKNNP 116

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+L  N++     + F   K++ +LDLS N LS         L  L  L LS N +
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 66  VGKIPTSTQLQSFSPTS 82
                    L  F+ +S
Sbjct: 158 QALKSEE--LDIFANSS 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
           ++ +L  L+LS+N L      SF  L  +E   L  NN+    S  L  L  +  LNL  
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 63  NNLVGKIPTSTQLQSFSPTS 82
           +     I     L      S
Sbjct: 306 SFTKQSIS-LASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 6   SLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L+L  N +   +    +  L++I  + LS N          A +  L  L L    
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 65  LVGKIPTSTQLQSFS 79
           L     + +  Q   
Sbjct: 466 LKNVDSSPSPFQPLR 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF--LSVLNLSYN 63
           +L  L+LSHN L+ +   +   L++++ L LS N +    S +L       L  L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 64  NLVGKIPTS 72
            +    P  
Sbjct: 182 QIKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 6   SLYALNLSHNALTG--SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           SL  L L   AL    S PS F  L+++  LDLS NN++      L  L  L +L+L +N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 64  NL 65
           NL
Sbjct: 515 NL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA---SLNFLSVLNLSY 62
           SL  L LS N +    P  F  +  +  L L+   L   ++ +L    +   +  L+LS 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 63  NNLVGKIPTS 72
           + L     T+
Sbjct: 232 SQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLK--HIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           S+  L+LS++ L+ +  ++F  LK  ++  LDLS NNL+   +   A L  L    L YN
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 64  NLVGKIPTS 72
           N+      S
Sbjct: 283 NIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS--------GKISAQLASLN 53
               +L  L+LS+N +          L+ +E LDL  NNL+        G     L  L+
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 54  FLSVLNLSYNNLVGKIPTS 72
            L +LNL  N         
Sbjct: 537 HLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG--KISAQLASLNFLSVLNLSYN 63
           +++ + LS+N       +SF  +  ++ L L    L       +    L  L++L+LS N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 64  NLVGKIP 70
           N+     
Sbjct: 491 NIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 19/77 (24%), Positives = 33/77 (42%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S    ++S  +L      SF  LK +E L++  N++ G  S     L  L  L+LS +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 66  VGKIPTSTQLQSFSPTS 82
             +  T+    S + + 
Sbjct: 366 SLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 1   MGRFVSLYALNLSHNALT--------GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASL 52
           +     L  L+L HN L         G        L H+  L+L +N            L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             L +++L  NNL     + 
Sbjct: 560 FELKIIDLGLNNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKH--IESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           +L  L LS+N +            +  ++ L+LS+N +         ++  L  L L+  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 64  NLVGKIPTSTQLQ 76
            L   +     L+
Sbjct: 206 QLGPSLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK--ISAQLASL--NFLSVLNLS 61
            L  LN+  N + G   + F  L +++ L LS +  S +   +    SL  + L +LNL+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 62  YNNLVGKIPTS 72
            N +      +
Sbjct: 390 KNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFG---NLKHIESLDLSTNNLSGKISAQLASLNF--LSVLNL 60
            L+ L L++  L  S+            I +L LS + LS   +     L +  L++L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 61  SYNNLVGKIPTS 72
           SYNNL      S
Sbjct: 256 SYNNLNVVGNDS 267

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 1   MGRFVSLYALNLSHNALTGS--IPSSFGNLKH--IESLDLSTNNLSGKISAQLASLNFLS 56
               ++L  L+LS++  +       +F +L H  +  L+L+ N +S   S   + L  L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 57  VLNLSYNNLVGKIPTST 73
           VL+L  N +  ++    
Sbjct: 409 VLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           VS    + SH  LT  +P       +I  L+L+ N L    +A     + L+ L++ +N
Sbjct: 3  TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 64 NLVGKIPTS 72
           +    P  
Sbjct: 60 TISKLEPEL 68

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ---------LASL 52
                L    L +N +      S   L ++  L+L  +     IS              L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             L  LN+  N++ G     
Sbjct: 329 KCLEHLNMEDNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFG-NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
              VSL +LNL  N +T      FG   +++  LD+  N       +      F++ +N 
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW---FVNWINE 637

Query: 61  SYNNLVG 67
           ++ N+  
Sbjct: 638 THTNIPE 644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-------KISAQLASLNF 54
            + +++ ++NLS+N ++      F     + S++L  N L+          +    +   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 55  LSVLNLSYNNLVGKIPTSTQLQSFS 79
           L+ ++L +N L   +    +  +  
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLP 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 4/83 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG----KISAQLASLNFLS 56
           +     +  L+L     +G +P + G L  +E L L ++             +++     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 57  VLNLSYNNLVGKIPTSTQLQSFS 79
                  +           + FS
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFS 159

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 6   SLYALNLSHNAL-TGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            +  + + +N L T  + +S   +K +  L+   N L GK+ A   S   L+ LNL+YN 
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364

Query: 65  LVGKIPTST 73
           +   IP + 
Sbjct: 365 ITE-IPANF 372

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLST------NNLSGKISAQLASLNF 54
                 L  ++LS+N+ +   P+   N   ++   +        N    +    +     
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 55  LSVLNLSYNNLVGKIPTST 73
           L+ L +  N++   +    
Sbjct: 568 LTQLQIGSNDIRK-VNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 1   MGRFVSLYALNLSHNALTG-------SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLN 53
                 + A++ S+N +          +  +     ++ S++LS N +S       ++ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 54  FLSVLNLSYNNLVG 67
            LS +NL  N L  
Sbjct: 458 PLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            +   L  L   +N L G +P+ FG+   + SL+L+ N ++   +        +  L+ +
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 62  YNNLVGKIPTSTQLQSFS 79
           +N L   IP     +S S
Sbjct: 386 HNKL-KYIPNIFDAKSVS 402

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69
            +   N      P        +  L + +N++   ++ ++     +SVL++  N  +   
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISID 603

Query: 70  PTS 72
            + 
Sbjct: 604 LSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 10/71 (14%), Positives = 27/71 (38%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69
            N  +     +    + NLK +  +++       K+   L +L  + ++N++ N  +   
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 70  PTSTQLQSFSP 80
                 Q+ + 
Sbjct: 290 QLKDDWQALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL--------SGKISAQLASLN 53
                L  + + +      +P+    L  ++ ++++ N            +  A      
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 54  FLSVLNLSYNNL-VGKIPTS 72
            + ++ + YNNL    + TS
Sbjct: 306 KIQIIYIGYNNLKTFPVETS 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNL 60
           G  + L +LNL++N +T    +  G  + +E+L  + N L          S++ +S ++ 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 61  SYNNLVGKIPTS 72
           SYN +      +
Sbjct: 410 SYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 1   MGRFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVL- 58
                 L +++L  N LT          L ++  +DLS N+ S     Q  + + L    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 59  -----NLSYNNLVGKIPTS 72
                +   N  + + P  
Sbjct: 543 IRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           F  L    ++ +    SI  S         +   +NN++  +S  +  L  L    +  +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216

Query: 64  NLVGKIPTS 72
             V +    
Sbjct: 217 PFVAENICE 225

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 7/101 (6%), Positives = 24/101 (23%), Gaps = 24/101 (23%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSV---- 57
              +    +    N +T  +  +   L  +    +  +    +   +             
Sbjct: 180 RITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 58  ---------------LNLSYNNLVGKIPTS----TQLQSFS 79
                          + +     + K+PT      ++Q  +
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSF--GNLKHIESLDLSTNNLSG-------KISAQLASL 52
           G    +  L+ +HN L   IP+ F   ++  + ++D S N +          +       
Sbjct: 374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             +S +NLS N +       
Sbjct: 433 INVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 11/62 (17%), Positives = 18/62 (29%)

Query: 11  NLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70
           N   +        S  +   +  L L     SG++   +  L  L VL L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 71  TS 72
             
Sbjct: 123 LF 124

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    SL  L +  N +   +        +I  LD+  N       + +       +  L
Sbjct: 562 ITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 61  SYNNL 65
            Y+  
Sbjct: 619 FYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 6/82 (7%)

Query: 2   GRFVSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF--L 55
           G+   L  L L  +          P         E       +            +F  L
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 56  SVLNLSYNNLVGKIPTSTQLQS 77
               ++ +     I  S+++  
Sbjct: 162 IKDCINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 4/74 (5%), Positives = 17/74 (22%), Gaps = 3/74 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLK--HIESLDLSTNNLSGKISAQLASLNFLSVL 58
           +   +S             +            +    ++++     I          + +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 59  NLSYNNLVGKIPTS 72
               NN+   +  +
Sbjct: 189 GQLSNNITF-VSKA 201

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 13/77 (16%), Positives = 25/77 (32%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           V     N  +     +   S+ NLK +  ++L       ++   L  L  L  LN++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 65  LVGKIPTSTQLQSFSPT 81
            +            +  
Sbjct: 527 GISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG---------KISAQLASL 52
                L  + L +      +P    +L  ++SL+++ N             +++    + 
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 53  NFLSVLNLSYNNLVGKIPTSTQLQS 77
             + +  + YNNL    P S  LQ 
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDL------STNNLSGKISAQLASLNF 54
                 L  +++S+N  + S P+   N   +++  +        N +  +    + +   
Sbjct: 749 ATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 55  LSVLNLSYNNLVGKIPTS--TQLQSF 78
           L  L +  N++  K+      QL   
Sbjct: 808 LIQLQIGSNDI-RKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS-------GKISAQLASLNFL 55
           + ++   + LS+N +       F     I ++ LS N ++               +   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 56  SVLNLSYNNLVGKIPTSTQLQSFS 79
           + ++L +N L   +    +  +  
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-------QLASLNFLSVL 58
            +  L+L+     G +P + G L  ++ L   T++ +               S      +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 59  NLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNE 97
            + Y  +         L      +   N  +      + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 1   MGRFVSLYALNLSHNALTG---------SIPSSFGNLKHIESLDLSTNNLSG-KISAQLA 50
           +     L +LN++ N              +         I+   +  NNL     SA L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 51  SLNFLSVLNLSYNNLVGKIPTSTQLQS 77
            +  L +L+  +N +   +        
Sbjct: 571 KMVKLGLLDCVHNKVR-HLEAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 2   GRFVSLYALNLSHNALT-------GSIPSSFGNLKHIESLDLSTNNLSGKISAQLA--SL 52
                +  + LS+N +T            ++ N   + ++DL  N L+  +S      +L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

Query: 53  NFLSVLNLSYNNLVGKIPTS----TQLQSFS 79
            +LS +++SYN      PT     +QL++F 
Sbjct: 753 PYLSNMDVSYNCF-SSFPTQPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 1/97 (1%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69
            N   +           N   +  L L+     G++   +  L  L VL+   ++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-S 362

Query: 70  PTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQ 106
                 +  +P   E  K                 L 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
                +    + +N L     S S   +  +  LD   N +   + A   +   L+ L L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKL 602

Query: 61  SYNNLVGKIPTST 73
            YN +   IP   
Sbjct: 603 DYNQIEE-IPEDF 614

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            + V L  L+  HN +      +FG    +  L L  N +        A  + +  L  S
Sbjct: 570 QKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 62  YNNLVGKIPTSTQLQS 77
           +N L   IP     +S
Sbjct: 628 HNKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 7e-09
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            +   N +    P+       +  L + +N++  K+  +L     L +L+++ N  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFG-----NLKHIESLDLSTNNLSGKISAQLASLNFL 55
                 + +++ S+N +     +           +  ++ LS N +    +   A+ + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 56  SVLNLSYNNL 65
           S + LS N +
Sbjct: 700 STIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLN 59
            G  V L  L L +N +             +E L  S N L          S+  +  ++
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 60  LSYNNL 65
            SYN +
Sbjct: 651 FSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 2   GRFVSLYALNLSHNALTGSIPSS--FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
                L  ++L  N LT S+        L ++ ++D+S N  S     Q  + + L    
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782

Query: 60  LSY------NNLVGKIPTS 72
           + +      N ++ + PT 
Sbjct: 783 IRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            R   L  +  +++  T    +           +              ++L  L+ + L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 62  YNNLVGKIPTS----TQLQSFSPTSYEVNKGLYGPPLTNESQARPPEL 105
               + ++P       +LQS +      N+G+    L  +      + 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIAC---NRGISAAQLKADWTRLADDE 544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 6e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 6   SLYALNLSHNALTGSIPS--SFGNLKHIESLDLSTNNLSGKISAQLASLNF-----LSVL 58
            +  L  SHN L   IP+  +  ++  + S+D S N +  +      S++       S +
Sbjct: 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 59  NLSYNNLVGKIP 70
            LSYN +     
Sbjct: 679 TLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    SL  L +  N +   +         +  LD++ N         +       +  L
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 61  SYNNL 65
            Y+  
Sbjct: 859 LYDKT 863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 20/69 (28%), Positives = 28/69 (40%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            S   ++LS N L      SF N   ++ LDLS   +          L+ LS L L+ N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 64 NLVGKIPTS 72
           +    P S
Sbjct: 91 PIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+LS   L       F  L  ++ L++S NNL    S+    L  LS L+ S+N +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 66  VGKIPTS 72
                  
Sbjct: 534 ETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L+ N +    P SF  L  +E+L      L+   S  +  L  L  LN+++N +
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              L  LN+SHN L     S +  L  + +LD S N +             L+  NL+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 64  NL 65
           ++
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 14/71 (19%), Positives = 23/71 (32%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             F  L  L+LS   +      ++  L H+ +L L+ N +        + L  L  L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 62  YNNLVGKIPTS 72
              L       
Sbjct: 113 ETKLASLESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
            L  L++S+          F  L  + +L ++ N+      +   A+   L+ L+LS   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 65  LVGKIPTS 72
           L       
Sbjct: 485 LEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 6   SLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L+  H+ L      S+F +L+ +  LD+S  N           L  L+ L ++ N+
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 65  LVGKIPTST 73
                 ++ 
Sbjct: 460 FKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           SL  L ++ N+   +  S+ F N  ++  LDLS   L         +L+ L +LN+S+NN
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 65  LVGKIPTS 72
           L+    + 
Sbjct: 509 LLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
           SL  L+LS N     + ++F  L+ ++ LD   + L          SL  L  L++SY N
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 65  LVGKIPTS 72
                   
Sbjct: 436 TKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 6   SLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLS----VLNL 60
           +L  LN++HN +    +P+ F NL ++  +DLS N +       L  L         L++
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 61  SYNNL 65
           S N +
Sbjct: 189 SLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKH----IESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           +L  ++LS+N +     +    L+       SLD+S N +          +  L  L L 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLR 212

Query: 62  YNNLVGKIPTST 73
            N     I  + 
Sbjct: 213 GNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
             L++          F  L ++ ++ L+  ++       +        L++    L
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLS--VLNLS 61
              L +L L+ N    SI      L  +  LDLS N LS       + L   S   L+LS
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 62  YNNLVGKIPTSTQLQS 77
           +N  +        L+ 
Sbjct: 385 FNGAIIMSANFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
              +L++    L         +L  ++SL L+ N  S  IS +  +L  LS L+LS N L
Sbjct: 308 KWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNAL 362

Query: 66  VGKIPTSTQ 74
                 S  
Sbjct: 363 SFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI-SAQLASLNFLSVLNLSYNN 64
              +L++S N +      +F  +K +  L L  N  S  I    L +L  L V  L    
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 65  LVG 67
              
Sbjct: 241 FKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS 42
           SL  L+ S N +  S        K +   +L+ N+++
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L+ N L     ++    K ++ L      +S      L +   L  L L  N++
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 66  VGKIPTS 72
                  
Sbjct: 142 SSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L+L+   L+  +PS    L  ++ L LS N          ++   L+ L++  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 66  VGKIPTST 73
             ++ T  
Sbjct: 338 RLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S   L  S N L     ++F  L ++  LDL+   +         S + L  L L+ N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 66  VGKIPTS 72
           +    T+
Sbjct: 94  IFMAETA 100

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 12/71 (16%), Positives = 25/71 (35%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            R ++L  L+L+   +      +F +   +++L L+ N L       L+    L  L   
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 62  YNNLVGKIPTS 72
              +       
Sbjct: 114 QTGISSIDFIP 124

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI---SAQLASLNFLSVLNLSY 62
            L  LNLSH+ L  S    F  L  ++ L+L  N+        +  L +L  L +L LS+
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 63  NNLVGKIPTS 72
            +L      +
Sbjct: 486 CDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS-AQLASLNFLSVLNLSYNN 64
            L +LNLS+N        +F     +E LDL+   L  K + +   +L+ L VLNLS++ 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 65  L 65
           L
Sbjct: 437 L 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L      ++        N K +ESL L +N++S     +      L VL+   N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S+ ++NL  +       ++F     ++ LDL+  +LS ++ + L  L+ L  L LS N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 66  VGKIPTS 72
                 S
Sbjct: 314 ENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L LS   L+     +F +LK +  +DLS N L+      L+ L  +  LNL+ N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 66  VGKIPTS 72
              +P+ 
Sbjct: 536 SIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 6   SLYALNLSHNALTGS--IPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           +L  L+LSH+ +  S        NL H++SL+LS N      +        L +L+L++ 
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 64  NLVGKIPTST 73
            L  K   S 
Sbjct: 411 RLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSI---PSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
           +L  LNL  N          +S   L  +E L LS  +LS        SL  ++ ++LS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 63  NNLVGKIPTS 72
           N L      +
Sbjct: 510 NRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 6   SLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L+L+   L      S F NL  ++ L+LS + L          L  L  LNL  N+
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 65  LVGKIP 70
                 
Sbjct: 461 FPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              +  ++LSHN LT S   +  +LK I  L+L++N++S  + + L  L+    +NL  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 64  NL 65
            L
Sbjct: 558 PL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSV--LNLSYN 63
           +L +L L  N ++          + ++ LD   N +       ++SL   +   LNL+ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 64  NLVGKIPTSTQLQSF 78
           ++ G  P +     F
Sbjct: 190 DIAGIEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNL--SGKISAQLASLNFLSVLNLSY 62
           SL  L++  N     + +    NL+++  LDLS +++  S   + QL +L+ L  LNLSY
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 63  NNLVGKIPTS 72
           N  +     +
Sbjct: 386 NEPLSLKTEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIE--SLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            L  L+  +NA+         +L+     SL+L+ N+++G I            LN    
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGT 212

Query: 64  NLVGKIPTSTQLQSFS 79
             +  I    +  +  
Sbjct: 213 QNLLVIFKGLKNSTIQ 228

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           N  +  L   IP +       E L+ S N L    +   + L  L+ L+L+   +
Sbjct: 17 YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF--LSVLNLSYN 63
           +  +LNL+ N +   I     +    +SL+         I   L +     L +      
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 64  NL 65
           + 
Sbjct: 239 DD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG 67
           LNL+ N ++  +PS    L    +++L  N L    S     + FL     +   L  
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN----IYFLEWYKENMQKLED 581

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
                ++ ++L  ++ S   +  +++ LDLS N LS   +A LA    L +LNLS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 66 VGKIPTSTQLQS 77
            +      L +
Sbjct: 71 Y-ETLDLESLST 81

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNL 60
            R      + L++N +T       G    ++ LDL  N +     +   AS + L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 61  SYNNLVGKIPTSTQLQS 77
            YN +   +        
Sbjct: 177 QYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L+LS N L   +   F +   +  + L  N L   I   L     L   +L  N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             F  L  LNLS N L         +L  + +LDL+ N +      +L     +  L+ +
Sbjct: 55  APFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 62  YNNLVGKIPTST 73
            NN+  ++  S 
Sbjct: 108 NNNI-SRVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  LNL +N +   +         +++LDLS+N L+  +  +  S   ++ ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 62  YNNL 65
            N L
Sbjct: 223 NNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                +  ++L +N L   I  +    +++E  DL  N      + +        V  ++
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVA 268

Query: 62  YNNL 65
              +
Sbjct: 269 KQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S+  L+ ++N ++    S     K+   + L+ N ++          + +  L+L  N +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 20 SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          +I     N    +   ++ ++L   +++   S   +  L+LS N L
Sbjct: 1  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L+L++N +             IE+L  + NN+S ++S   +       + L+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLA 128

Query: 62  YNNL 65
            N +
Sbjct: 129 NNKI 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
                ++ ++L  ++ S   +  +++ LDLS N LS   +A LA    L +LNLS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 66 VGKIPTSTQLQS 77
                   L +
Sbjct: 71 YE-TLDLESLST 81

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNL 60
            R      + L++N +T       G    ++ LDL  N +     +   AS + L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 61  SYNNLVGKIPTSTQLQS 77
            YN +   +        
Sbjct: 177 QYNFIY-DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L+LS N L   +   F +   +  + L  N L   I   L     L   +L  N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  LNLS N L         +L  + +LDL+ N +      +L     +  L+ + NN+
Sbjct: 59  KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 66  VGKIPTST 73
             ++  S 
Sbjct: 112 -SRVSCSR 118

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  LNL +N +   +         +++LDLS+N L+  +  +  S   ++ ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 62  YNNL 65
            N L
Sbjct: 223 NNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S+  L+ ++N ++    S     K+   + L+ N ++          + +  L+L  N +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1   MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
            G    +  L+L  N +   +      +   +E L+L  N +   +         L  L+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLD 197

Query: 60  LSYNNL 65
           LS N L
Sbjct: 198 LSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                +  ++L +N L   I  +    +++E  DL  N      + +        V  ++
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVA 268

Query: 62  YNNL 65
              +
Sbjct: 269 KQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 20 SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          +I     N    +   ++ ++L   +++   S   +  L+LS N L
Sbjct: 1  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L+L++N +             IE+L  + NN+S       +       + L+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLA 128

Query: 62  YNNL 65
            N +
Sbjct: 129 NNKI 132

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
             R   L  + +    L   +P +      +E+L L+ N L   + A +ASLN L  L++
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 61  SYNNLVGKIPTS 72
                + ++P  
Sbjct: 158 RACPELTELPEP 169

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
               V+L +L L    +  S+P+S  NL++++SL +  + LS  +   +  L  L  L+L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 61  SYNNLVGKIPTS 72
                +   P  
Sbjct: 237 RGCTALRNYPPI 248

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
              AL L    L    P     L H++ + +    L  ++   +     L  L L+ N L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 66  VGKIPTS 72
              +P S
Sbjct: 140 R-ALPAS 145

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    +L +L + ++ L+ ++  +  +L  +E LDL                  L  L L
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 61  SYNNLVGKIPTS----TQLQSFS 79
              + +  +P      TQL+   
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLD 283

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF------ 54
           M +F  L  L L+ N L  ++P+S  +L  +  L +       ++   LAS +       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 55  ---LSVLNLSYNNLVGKIPTS 72
              L  L L +  +   +P S
Sbjct: 182 LVNLQSLRLEWTGIR-SLPAS 201

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 13/72 (18%), Positives = 26/72 (36%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +     L  L+L       + P  FG    ++ L L   +    +   +  L  L  L+L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 61  SYNNLVGKIPTS 72
                + ++P+ 
Sbjct: 285 RGCVNLSRLPSL 296

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 9e-10
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           + + + +  L+LSHN L  ++P +   L+ +E L  S N L   +   +A+L  L  L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 61  SYNNL 65
             N L
Sbjct: 516 CNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69
           L+L+H  LT  +      L  +  LDLS N L   +   LA+L  L VL  S N L   +
Sbjct: 446 LHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 70  PTSTQLQS 77
                L  
Sbjct: 502 DGVANLPR 509

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNL 60
                L  L  S NAL  ++     NL  ++ L L  N L        L S   L +LNL
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 61  SYNNLVGKIPTSTQLQSFSPT 81
             N+L  +     +L    P+
Sbjct: 541 QGNSLCQEEGIQERLAEMLPS 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
          +   L LS N +     SSF  L+ ++ L+L +      I  +   +L  L +L+L  + 
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 65 L 65
          +
Sbjct: 85 I 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  LNLS+N L     S+F  L  +  +DL  N+++         L  L  L+L  N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 66  VGKIPTSTQLQS 77
              I     +  
Sbjct: 375 T-TIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S+  L+LSH  +       F  LK ++ L+L+ N ++         L+ L VLNLSYN L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 6   SLYALNLSHNALTGSI--PSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSY 62
            L+ L L    L+ ++     F NLK +  LDLS N +    +      LN L  ++ S 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 63  NNL 65
           N +
Sbjct: 158 NQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI--SAQLASLNFLSVLNLSYN 63
           +L  L+L  + +    P +F  L H+  L L    LS  +       +L  L+ L+LS N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 64  NL 65
            +
Sbjct: 134 QI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 3   RFVSLYALNLSHNALTGSI-PSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               L  L L       +I   +F NL ++  LDL ++ +          L  L  L L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 62  YNNL 65
           +  L
Sbjct: 106 FCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           LNL++N +      +F  L +++ L+LS N L    S+    L  ++ ++L  N++
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF--LSVLNLSY 62
           +L  L+LS N +    +  SFG L  ++S+D S+N +      +L  L    LS  +L+ 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 63  NNLVGKIPTS 72
           N+L  ++   
Sbjct: 184 NSLYSRVSVD 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 6   SLYALNLSHNALTGSIPSS-----FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           SL  L L  N L  +  +      F  L H++ L L+ N L+       + L  L  L+L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 61  SYNNL 65
           + N L
Sbjct: 512 NSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 1   MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNF----- 54
           + R   L  L L+ N  +  S   +      +E L L  N L      +L    F     
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 55  LSVLNLSYNNL 65
           L VL L++N L
Sbjct: 482 LQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 6   SLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYN 63
           +   ++LS N L    I      + H++ L L+ N  S        +    L  L L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 64  NLVGKIPTSTQLQSFSPTS 82
            L     T      F   S
Sbjct: 462 MLQLAWETELCWDVFEGLS 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L+HN L    P  F +L  +  L L++N L+      L +   L +L++S N L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 5  VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
                      LT  +P     L   E L LS N +    ++    L  L +L L    
Sbjct: 4  FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 65 LVGKIPTST 73
              I    
Sbjct: 60 TPLTIDKEA 68

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNL--KHIESLDLSTNNLSGKISAQLASLN------ 53
           G+  SL +++ S N +          L  K +    L+ N+L  ++S             
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 54  FLSVLNLSYNNLVGKIP 70
            L +L++S N     I 
Sbjct: 205 VLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGN------------LKHIESLDLSTNNLSGKISAQLA 50
           R + L  L++S N  T  I  +F N              HI       +N+        A
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 51  SLNFLSV--LNLSYNNLVGKIPTST 73
            L   SV  L+LS+  +   + +  
Sbjct: 262 GLARSSVRHLDLSHGFVF-SLNSRV 285

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            SL  L++SH+A   SI +    L  + S+DLS N     I   L +L  L  LN+ ++ 
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG 170

Query: 65  L 65
           +
Sbjct: 171 V 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L +    +T     +   L  +  LD+S +     I  ++ +L  ++ ++LSYN  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 66  VGKI 69
           +  I
Sbjct: 149 ITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             ++  L +++   T    +    L ++E L +   +++      L+ L  L++L++S++
Sbjct: 65  AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 64  NLVGKIPTS 72
                I T 
Sbjct: 123 AHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            + +++LS+N     I      L  ++SL++  + +       +     L+ L      +
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  + L++  +T  + +      +I+ L ++  + +   +  ++ L+ L  L +   ++
Sbjct: 45  SLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDV 100

Query: 66  VGKIPTS 72
                 +
Sbjct: 101 TSDKIPN 107

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L+ N +      +F  L  ++ L     NL+   +  +  L  L  LN+++N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            S   L+LS N L      SF +   ++ LDLS   +         SL+ LS L L+ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64 NL 65
           +
Sbjct: 87 PI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL-SGKISAQLASLNFLSVLNLSYNN 64
           SL  L      L        G+LK ++ L+++ N + S K+    ++L  L  L+LS N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 65  L 65
           +
Sbjct: 161 I 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALT--GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           SL  L+LS N L+  G    S      ++ LDLS N +   +S+    L  L  L+  ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 64  NLVGKIPTST 73
           NL      S 
Sbjct: 407 NLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           SL  L ++ N+   +     F  L+++  LDLS   L         SL+ L VLN++ N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 65  L 65
           L
Sbjct: 506 L 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNN 64
           SL  L+LS N +  ++ S+F  L+ +E LD   +NL          SL  L  L++S+ +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 65  L 65
            
Sbjct: 433 T 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             F  L  L+LS   +      ++ +L H+ +L L+ N +        + L+ L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  YNNL 65
             NL
Sbjct: 109 ETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 6   SLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L+  H+ L      S F +L+++  LD+S  +     +     L+ L VL ++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 65  LVGKIP 70
                 
Sbjct: 457 FQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+LS   L    P++F +L  ++ L++++N L          L  L  + L  N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 6   SLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSV----LNL 60
           +L  LN++HN +    +P  F NL ++E LDLS+N +       L  L+ + +    L+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 61  SYNNL 65
           S N +
Sbjct: 185 SLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS--GKISAQLASLNFLSVLNL 60
           +  SL  L  + N    +   S  +L  +E LDLS N LS  G  S        L  L+L
Sbjct: 323 KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 61  SYNNL 65
           S+N +
Sbjct: 381 SFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKH----IESLDLSTNNLSGKISAQLASLNFLS 56
                +L  L+LS N +     +    L        SLDLS N ++  I         L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLH 203

Query: 57  VLNLSYNNLVGKIP 70
            L L  N     + 
Sbjct: 204 KLTLRNNFDSLNVM 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N++
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  ++LS+N L   +   F  ++ +E L +S N L   ++     +  L VL+LS+N+L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            V L  L L HN LT    +   N   +  +DLS N L   +      +  L  L +S N
Sbjct: 225 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 64  NL 65
            L
Sbjct: 283 RL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+LSHN L   +  +      +E+L L  N++    + +L++ + L  L LS+N+ 
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 18/60 (30%), Positives = 23/60 (38%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L  N L+      F N   + +L +S NNL         +   L  L LS N L
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L++S+N L      +F     +++L LS+N L+      L+ +  L   N+SYN L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL 198

Query: 66  VGKIPTSTQLQSFS 79
              +     ++   
Sbjct: 199 -STLAIPIAVEELD 211

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            +  LNL+   +      +F     I+ L +  N +         ++  L+VL L  N+L
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           ++  L +  NA+    P  F N+  +  L L  N+LS        +   L+ L++S NNL
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 66  VGKIPTST 73
             +I   T
Sbjct: 154 E-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               SL+  N+S+N L+     +      +E LD S N+++  +   +     L++L L 
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 234

Query: 62  YNNLVGKIPTSTQLQS 77
           +NNL            
Sbjct: 235 HNNLT-DTAWLLNYPG 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 21/60 (35%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            Y +++               L + + +    + +    +A L S   + +LNL+   +
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
              V L  L +  N +T    S+  NL ++  L L+ +N+S      LA+L  +  LNL 
Sbjct: 85  SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLG 140

Query: 62  YNNLVGKIPTSTQLQS 77
            N+ +  +   + +  
Sbjct: 141 ANHNLSDLSPLSNMTG 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L +L L++N L        G L ++ +L LS N+++      LASL+ +   + +   +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  LN+  N ++    S   NL  + SL L+ N L  +    +  L  L+ L LS
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 62  YNNLVGKIPTS--TQLQSF 78
            N++    P +  +++ S 
Sbjct: 320 QNHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  L +  N ++    ++  +L  ++ L++ +N +S  IS  L +L+ L+ L L+
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLN 295

Query: 62  YNNLVGKIPTS 72
            N L  +    
Sbjct: 296 NNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                +Y+LNL  N    S  S   N+  +  L ++ + +   ++  +A+L  L  L+L+
Sbjct: 129 ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLN 185

Query: 62  YNNL 65
           YN +
Sbjct: 186 YNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L +L + +N +T   P    NL  +  L++ TN +S  I+A +  L  L +LN+ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVG 273

Query: 62  YNNL 65
            N +
Sbjct: 274 SNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    +L  LNL+ N +T   P    NL  + +L + TN ++  ISA L +L  L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA-LQNLTNLRELYL 117

Query: 61  SYNNLVGKIP 70
           + +N+    P
Sbjct: 118 NEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                  L   ++T  +      L+ I  L ++   ++  I   +  L  L  LNL+ N
Sbjct: 21 LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGN 76

Query: 64 NLVGKIPTS--TQLQSFS 79
           +    P S   +L +  
Sbjct: 77 QITDISPLSNLVKLTNLY 94

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               S+  L ++   +  SI      L ++E L+L+ N ++      L++L  L+ L + 
Sbjct: 41  EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG 96

Query: 62  YNNL 65
            N +
Sbjct: 97  TNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                LY+L+L++N +    P    +L  +       N ++      +A++  L+ L + 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 62  YNNLVGKIPTS--TQLQS 77
            N +    P +  +QL  
Sbjct: 230 NNKITDLSPLANLSQLTW 247

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  L ++ + +    P    NL  + SL L+ N +   IS  LASL  L      
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAY 207

Query: 62  YNNLVGKIP 70
            N +    P
Sbjct: 208 VNQITDITP 216

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N++
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  ++LS+N L   +   F  ++ +E L +S N L   ++     +  L VL+LS+N+L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            V L  L L HN LT    +   N   +  +DLS N L   +      +  L  L +S N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 64  NL 65
            L
Sbjct: 289 RL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L++S+N L      +F     +++L LS+N L+      L+ +  L   N+SYN L
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL 204

Query: 66  VGKIPTSTQLQSFS 79
              +     ++   
Sbjct: 205 -STLAIPIAVEELD 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+LSHN L   +  +      +E+L L  N++    + +L++ + L  L LS+N+ 
Sbjct: 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 25/64 (39%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             F  +  LNL+   +      +F     I+ L +  N +         ++  L+VL L 
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 62  YNNL 65
            N+L
Sbjct: 132 RNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 6/60 (10%), Positives = 24/60 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +   +   ++ +     +   + + +E L+L+   +    +   A  + +  L + +N +
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNN 64
           ++  L +  NA+    P  F N+  +  L L  N+LS  +   +  +   L+ L++S NN
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158

Query: 65  L 65
           L
Sbjct: 159 L 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  L LS N LT  +      +  +   ++S N LS      LA    +  L+ S+N++
Sbjct: 172 SLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               SL+  N+S+N L+     +      +E LD S N+++     +      L++L L 
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQ 240

Query: 62  YNNLVGKIPTSTQLQS 77
           +NNL            
Sbjct: 241 HNNLT-DTAWLLNYPG 255

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 21/60 (35%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            Y +++               L + + +    + +    +A L S   + +LNL+   +
Sbjct: 28 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            LY L L HN +      S   L  +  L L  N LS ++ A L  L  L V+ L  NN+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

Query: 66  VGKIPTSTQLQSFSPTSYEVN 86
                T   +  F P  + V 
Sbjct: 277 -----TKVGVNDFCPVGFGVK 292

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 4   FVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
             +L  L+L HN +  +I          +  L L  N +    +  L+ L  L  L+L  
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 63  NNL 65
           N L
Sbjct: 251 NKL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
                 L+L +N ++      F  L+H+ +L L  N +S KI  +  + L  L  L +S 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 63  NNLVGKIPTST 73
           N+LV +IP + 
Sbjct: 112 NHLV-EIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI--SAQLASLNFLSVLNLS 61
             SL  L +  N +       F  L+++  +++  N L            L  L+ L +S
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRIS 180

Query: 62  YNNL 65
              L
Sbjct: 181 EAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            LYAL L +N ++     +F  L+ ++ L +S N+L  +I   L   + L  L +  N +
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRI 135

Query: 66  VGKIPTST 73
             K+P   
Sbjct: 136 R-KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
            L  L +S   LT  IP      + +  L L  N +   I  + L   + L  L L +N 
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 65  L 65
           +
Sbjct: 229 I 229

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 2   GRFVSLYALNLSHNALT--GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
           G + SL  L LS N L            LK++ SLD+S N     +         +  LN
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 60  LSYNNL 65
           LS   +
Sbjct: 417 LSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNN 64
           SL  L+LS N L+    S FG L  ++ L+L  N      +++   +L  L  L +    
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 65  LVGKIPTST 73
              +I    
Sbjct: 135 TFSEIRRID 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            ++ +L+LS N +T           +++ L L ++ ++        SL  L  L+LS N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 64 NL 65
          +L
Sbjct: 85 HL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 12/79 (15%), Positives = 34/79 (43%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
             V++  L++    L   + + +  L+ ++ + +  + +     +    L  L  L+LS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 63  NNLVGKIPTSTQLQSFSPT 81
           N +V +   ++  +   P+
Sbjct: 344 NLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
              +L  L L  + +      +F +L  +E LDLS N+LS   S+    L+ L  LNL  
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 63  NNL 65
           N  
Sbjct: 108 NPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  L +   +L      S  +++ I  L L  +  +  +      L+ +  L L   NL
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 6   SLYALNLSHNALTGSI---PSSFGNLKHIESLDLSTNNLS--GKISAQLASLNFLSVLNL 60
           SL  L+LS N +        +  G    +++L LS N+L    K    L +L  L+ L++
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 61  SYNNL 65
           S N  
Sbjct: 395 SRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI---SAQLASLNFLSVLNL 60
              +  + + ++ +     S   +LK +E LDLS N +  +    SA   +   L  L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 61  SYNNL 65
           S N+L
Sbjct: 369 SQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L +L++S N     +P S    + +  L+LS+  +      +      L VL++S NNL
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           +L  L + +      I    F  L  +  L++   +L    S  L S+  +  L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 65  L 65
            
Sbjct: 184 S 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +S N L  ++P +      +  + +S N L          L  L  + L  N  
Sbjct: 452 RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 66  V 66
            
Sbjct: 510 D 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L++S+N L  S       L+    L +S N L   +    +    L V+ +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSLFLPRLQE---LYISRNKLK-TLPD-ASLFPVLLVMKIS 481

Query: 62  YNNL 65
            N L
Sbjct: 482 RNQL 485

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L LS N+++     S  N  H+  L L+ N L  K+   LA   ++ V+ L  NN+
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 66  VGKIPTSTQLQSFSPTSYEVN 86
                ++     F P  Y   
Sbjct: 276 -----SAIGSNDFCPPGYNTK 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 4   FVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
             SL  L+L  N +T  + + S   L ++  L LS N++S   +  LA+   L  L+L+ 
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 63  NNL 65
           N L
Sbjct: 250 NKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG------KISAQLASLNFLSVLN 59
            L  L+L++N L   +P    + K+I+ + L  NN+S                   S ++
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 60  LSYNNL 65
           L  N +
Sbjct: 300 LFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL-SGKISAQ-LASLNFLSVLNLS 61
             +L  L +  N +T    S F  L  +  ++L TN L S  I       +  LS + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 62  YNNLVGKIPTST 73
             N+   IP   
Sbjct: 180 DTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
                 L+L +N +T      F NLK++ +L L  N +S KIS    A L  L  L LS 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 63  NNLVGKIPTST 73
           N L  ++P   
Sbjct: 110 NQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L+ L L +N ++   P +F  L  +E L LS N L  ++  ++     L  L +  N +
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEI 133

Query: 66  VGKIPTST 73
             K+  S 
Sbjct: 134 T-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
            L  + ++   +T +IP   G    +  L L  N ++ K+ A  L  LN L+ L LS+N+
Sbjct: 172 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 65  L 65
           +
Sbjct: 228 I 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              +  L +  N LT S+P+    L+   +L++S N L+  +      L  LS+ +    
Sbjct: 60  PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 64  NL 65
           +L
Sbjct: 115 HL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +S N LT S+P     L  +        +L    S        L  L +  N L
Sbjct: 82  ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL 133

Query: 66  VGKIPTS-TQLQS 77
              +P     LQ 
Sbjct: 134 -TSLPVLPPGLQE 145

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
              LN+  + LT ++P       HI +L +  NNL+  + A       L  L +S N L
Sbjct: 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQL 93

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L++S N L  S+P+    L     L    N L+  +    + L     L++S N L
Sbjct: 142 GLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQL 193

Query: 66  VGKIPTS-TQLQS 77
              +PT  ++L  
Sbjct: 194 A-SLPTLPSELYK 205

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L++S N L  S+P+    L     L    N L+  + A  +    L  L +S N L
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSG---LKELIVSGNRL 233

Query: 66  VGKIPTS-TQLQS 77
              +P   ++L+ 
Sbjct: 234 -TSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L +L++  N LT  +P S  +L    +++L  N LS +    L  +      +      
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 66  VGKIPTSTQLQ 76
                ++ +  
Sbjct: 321 DMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNN 64
            L  L +S N LT S+P     LK    L +S N L+      L    + L  L++  N 
Sbjct: 222 GLKELIVSGNRLT-SLPVLPSELK---ELMVSGNRLT-----SLPMLPSGLLSLSVYRNQ 272

Query: 65  L 65
           L
Sbjct: 273 L 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 25/94 (26%)

Query: 1   MGRFVSLYALNLSHNALTG----------------SIPSSFGNLKHIESLDLSTNNLSGK 44
               + L   +     L                  S+P     L   + L +S N L+  
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGL---QELSVSDNQLA-S 155

Query: 45  ISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQS 77
           + A  +    L  L    N L   +P   + LQ 
Sbjct: 156 LPALPSE---LCKLWAYNNQLT-SLPMLPSGLQE 185

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 5e-08
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIES----LDLSTNNLSGKISAQLASLNFLSVLNLS 61
           SL AL++S N L  S+P+      H E          N ++  I   + SL+    + L 
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPP 103
            N L  +I  S   Q+  P  +              +  RP 
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                 L L+   L+ S+P +      I  L+++ N L   +    AS   L  L+   N
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 64  NL 65
            L
Sbjct: 111 RL 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              +  L ++ NAL  S+P    +L++   LD   N LS  +    ASL     L++  N
Sbjct: 79  PPQITVLEITQNALI-SLPELPASLEY---LDACDNRLS-TLPELPASLK---HLDVDNN 130

Query: 64  NL 65
            L
Sbjct: 131 QL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             SL  L++ +N LT  +P     L++   ++   N L+  +     SL    VL++  N
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNN 170

Query: 64  NL 65
            L
Sbjct: 171 QL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
                  + N     +      +     L L+  NLS  +   L     ++VL ++ N L
Sbjct: 38  KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNAL 92

Query: 66  VGKIPTS-TQLQS 77
           +  +P     L+ 
Sbjct: 93  I-SLPELPASLEY 104

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNNL 65
           N  +N ++G+    F      E   L   N +  +S  +   +N  S L L+  NL
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL 71

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ--LASLNFLSVLNLSYN 63
           SL  L+LS N +  ++ S+F  L+ +E LD   +NL  ++S      SL  L  L++S+ 
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 136

Query: 64  NL 65
           + 
Sbjct: 137 HT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK--ISAQLASLNFLSVLNLS 61
            S   L L  N L       F  L  +  L LS+N LS K   S        L  L+LS
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 62 YNNL 65
          +N +
Sbjct: 87 FNGV 90

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           +L  L+LS   L   +   +F +L  ++ L++S NN     +     LN L VL+ S N+
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 65  L 65
           +
Sbjct: 235 I 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
           +L  L++SH     +    F  L  +E L ++ N+            L  L+ L+LS   
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 65  L 65
           L
Sbjct: 187 L 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
           SL  L ++ N+   +     F  L+++  LDLS   L  ++S     SL+ L VLN+S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 64  NL 65
           N 
Sbjct: 210 NF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALT--GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            L  L+LS N L+  G    S      ++ LDLS N +   +S+    L  L  L+  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 64  NLVGKIPTST 73
           NL      S 
Sbjct: 112 NLKQMSEFSV 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSIPSS--FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            L  L+  H+ L   +     F +L+++  LD+S  +     +     L+ L VL ++ N
Sbjct: 102 QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 64  NLVGKIPTST 73
           +         
Sbjct: 161 SFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASL-NFLSVLNLSYNN 64
           SL  LN+SHN         +  L  ++ LD S N++      +L    + L+ LNL+ N+
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 65  L 65
            
Sbjct: 260 F 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
             +   LNL  N +      +F +L H+E L L  N++  +I       L  L+ L L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 63  NNL 65
           N L
Sbjct: 133 NWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           V L  L +S N      P SF  L  ++ L +  + +S         L  L  LNL++NN
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 65  L 65
           L
Sbjct: 278 L 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
            L  L L +N +  SIPS +F  +  +  LDL        IS      L  L  LNL   
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 64  NLVGKIPTSTQLQSFSPTS 82
           N+         + + +P  
Sbjct: 207 NI-------KDMPNLTPLV 218

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  LNL    +   +P+    L  +E L++S N+           L+ L  L +  + +
Sbjct: 197 NLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
           SL  L L  N LT  IPS +F  L  +  L L  N +   I +     +  L  L+L   
Sbjct: 124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

Query: 64  NLVGKIPTST 73
             +  I    
Sbjct: 182 KKLEYISEGA 191

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            SL  L + ++ ++    ++F  L  +  L+L+ NNLS         L +L  L+L +N 
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 65  LV 66
             
Sbjct: 302 WN 303

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
                L+L  N +       F +  H+E L+L+ N +S  +      +L  L  L L  
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 63 NNLVGKIPTST 73
          N L   IP   
Sbjct: 90 NRLK-LIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L H  +      SF  L  ++ L++S       ++        L+ L++++ NL
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 66  VGKIPTST 73
              +P   
Sbjct: 237 T-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
           +L  L++S N +   +   F +L +++SL++  N+L   IS +  + LN L  L L   N
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN 163

Query: 65  L 65
           L
Sbjct: 164 L 164

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNN 64
            L  LNLS+N ++    S    L  ++ + L    L+  +       LN+L VLN+S N 
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 65  L 65
           L
Sbjct: 308 L 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           SL  L L    LT SIP+ +  +L  +  L L   N++         L  L VL +S+  
Sbjct: 153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 65  LVGKIPTST 73
            +  +  + 
Sbjct: 212 YLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           +L  L L  N L   IP   F  L ++  LD+S N +   +      L  L  L +  N+
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 65  LV 66
           LV
Sbjct: 140 LV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
           +L +L+++H  LT ++P  +  +L ++  L+LS N +S  I    L  L  L  + L   
Sbjct: 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG 282

Query: 64  NL 65
            L
Sbjct: 283 QL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  + L    L    P +F  L ++  L++S N L+    +   S+  L  L L  N L
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

Query: 66  V 66
            
Sbjct: 333 A 333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L   +N ++    SS  NL +I  L    N +S      LA+L  ++ L L+    
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 66  VGKIPTSTQLQSFSPTSYEVNKGLYGP 92
                      S   T   V   L  P
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           G   +L  L+L+ N L      +  +L ++  LDL+ N +S      L+ L  L+ L L 
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 62  YNNL 65
            N +
Sbjct: 274 ANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  +N S+N LT   P    NL  +  + ++ N ++      LA+L  L+ L L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 62  YNNLVGKIPTSTQLQS 77
            N +   I     L +
Sbjct: 121 NNQITD-IDPLKNLTN 135

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L  N ++   P     L  + +L+L+ N L       +++L  L+ L L +NN+
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321

Query: 66  VGKIPTS--TQLQSFS 79
               P S  T+LQ   
Sbjct: 322 SDISPVSSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L L  N ++   P    +L  ++ L    N +S   S  LA+L  ++ L+  +N +
Sbjct: 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQI 365

Query: 66  VGKIP 70
               P
Sbjct: 366 SDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  + +++N +    P    NL ++  L L  N ++      L +L  L+ L LS
Sbjct: 87  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142

Query: 62  YNNL 65
            N +
Sbjct: 143 SNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              +  L      +          L ++  ++ S N L+      L +L  L  + ++ N
Sbjct: 45  LDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 100

Query: 64  NLVGKIP 70
            +    P
Sbjct: 101 QIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                  L    +T ++     +L  + +L      +   I   +  LN L+ +N S N
Sbjct: 23 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 78

Query: 64 NLVGKIP 70
           L    P
Sbjct: 79 QLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L++S N ++    S    L ++ESL  + N +S      L  L  L  L+L+
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 62  YNNL 65
            N L
Sbjct: 230 GNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L L +N +T   P    NL ++  L+LS+N +S   +  L+ L  L  L+  
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG 164

Query: 62  YNNLVGKIP 70
            N +    P
Sbjct: 165 -NQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L  L LS N ++    S+   L  ++ L    N ++      LA+L  L  L++S
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 185

Query: 62  YNNL 65
            N +
Sbjct: 186 SNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           ++  L+  HN ++   P    NL  I  L L+    +      +     +S+ N   N  
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP---VNYKANVSIPNTVKNVT 408

Query: 66  VGKIPTST 73
              I  +T
Sbjct: 409 GALIAPAT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    SL  L+  +            NL  +E LD+S+N +S  IS  LA L  L  L  
Sbjct: 152 LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIA 206

Query: 61  SYNNL 65
           + N +
Sbjct: 207 TNNQI 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
             +   + L  N ++    +SF   +++  L L +N L+ +I A     L  L  L+LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 63  NNLVGKIPTST 73
           N  +  +  +T
Sbjct: 90  NAQLRSVDPAT 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L L  N ++     +F  L  ++ L L  N ++         L  L  L L  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 5   VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            +L  L L  NAL  ++P  +F +L ++  L L  N +S         L+ L  L L  N
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 64  NL 65
            +
Sbjct: 188 RV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 6   SLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
            L  L+LS NA   S+  + F  L  + +L L    L  ++       L  L  L L  N
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 64  NL 65
            L
Sbjct: 140 AL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 22/62 (35%), Positives = 29/62 (46%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            SL  L L  N +    P +F +L  + +L L  NNLS   +  LA L  L  L L+ N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 65  LV 66
            V
Sbjct: 237 WV 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
             +   LNL  N +     +SF +L+H+E L LS N++   I       L  L+ L L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 63  NNL 65
           N L
Sbjct: 122 NRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
            L  L L +N +  SIPS +F  +  +  LDL        IS      L+ L  LNL+  
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 64  NLVGKIPTSTQLQS 77
           NL  +IP  T L  
Sbjct: 196 NLR-EIPNLTPLIK 208

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
           + L  L+LS N L+   P SF  L H++ L +  + +   I      +L  L  +NL++N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

Query: 64  NL 65
           NL
Sbjct: 266 NL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLS 61
               L  L LS N +      +F  L ++ +L+L  N L+  I       L+ L  L L 
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 62  YNNLVGKIPTST 73
            N +   IP+  
Sbjct: 145 NNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  LNL+   L   IP+    L  ++ LDLS N+LS         L  L  L +  + +
Sbjct: 186 NLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +  + +     ++F NL+ +  ++L+ NNL+         L+ L  ++L +N  
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

Query: 66  V 66
            
Sbjct: 292 N 292

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
            F  L  L+  +  LT SI ++   L  ++ L+LS N +SG +         L+ LNLS 
Sbjct: 40  EFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 63  NNL 65
           N +
Sbjct: 98  NKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLS 61
           +   L  L LS N ++G +        ++  L+LS N +        L  L  L  L+L 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 62  YN 63
             
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 10 LNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          L L ++    G +       + +E L      L+  I+  L  LN L  L LS N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRV 76

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGN---LKHIESLDLSTNNLSGK----ISAQLASLNF 54
            RF +L  L +        +   F     L  +E++D+S   L+ +    +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 55  LSVLNLSYNNL 65
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 6   SLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKISAQLAS 51
            L  +++S   LT      +      +KH++ +++  N LS ++  +L  
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
             FV+L  L+L +  L  S+ S+   L  ++ L+LS N + G +      L  L+ LNLS
Sbjct: 46  AEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 62  YNNL 65
            N L
Sbjct: 104 GNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLS 61
           +   L  L LS N + G +      L ++  L+LS N L        L  L  L  L+L 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 62  YN 63
             
Sbjct: 129 NC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                A++ S N +   +   F  L+ +++L ++ N +         +L  L+ L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 64  NL 65
           +L
Sbjct: 99  SL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLS 61
               L  L +++N +          L  +  L L+ N+L        LASL  L+ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 62  YN 63
            N
Sbjct: 122 RN 123

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 2   GRFVSLYALNLSHNALT---GSIPSSFGNLKHIESLDLSTNNLSGKISAQLAS-LNFLSV 57
            +F +L  L L +  +    G   +       ++ LDLS N+L     A      + L+ 
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 58  LNLSYNNL 65
           LNLS+  L
Sbjct: 258 LNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
               V L  L+LSHN+L  +    S      + SL+LS   L  ++   L +   LSVL+
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLD 280

Query: 60  LSYNNLVGKIPTSTQLQS 77
           LSYN L    P+  +L  
Sbjct: 281 LSYNRLDR-NPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSS----FGNLKHIESLDLSTNN---LSGKISAQLASLN 53
           +  F +L  L+LS N   G               ++ L L        SG  SA  A+  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 54  FLSVLNLSYNNLVGKIPTSTQL 75
            L  L+LS+N+L       +  
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L +LNLS   L   +P   G    +  LDLS N L    S     L  +  L+L  N  
Sbjct: 254 QLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308

Query: 66  VG 67
           + 
Sbjct: 309 LD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI----SAQLASLNFLSVLNLS 61
            L  L+++                 + +LDLS N   G+     +        L VL L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 62  YNNL 65
              +
Sbjct: 210 NAGM 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 5   VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLS---GKISAQLASLNFLSVLNL 60
            +L  L L +N +   +   +F ++  ++ L LS N +S    ++      L  L +L+L
Sbjct: 112 QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLY 90
           S N L         L         V  GLY
Sbjct: 171 SSNKL-----KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 3   RFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           R  +L++L LSHN L   I S +F  + ++  LDLS+N+L        + L  L VL L 
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 62  YNNL 65
            N++
Sbjct: 121 NNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 5   VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            +L  L+LS N L  ++    F +L+ +E L L  N++          +  L  L LS N
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 64  NL 65
            +
Sbjct: 147 QI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 10  LNLSHNALTGSIPS--SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYNNL 65
           L+LSHN L+  + +  +   L ++ SL LS N+L+  IS++    +  L  L+LS N+L
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              L +L L +N +T    +    L  +++L L  N +S  I   LA L  L  L LS N
Sbjct: 130 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 185

Query: 64  NL 65
           ++
Sbjct: 186 HI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 3  RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
           F      NL   ++T ++      L  I+ +  + +++   +   +  L  ++ L L+ 
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 63 NNL 65
          N L
Sbjct: 75 NKL 77

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L +L+L HN ++  I +   +L  +ESL L  N ++  I+  L+ L  L  L+L  N 
Sbjct: 109 KKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164

Query: 65  L 65
           +
Sbjct: 165 I 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +L  L L  N +   + SS  +LK ++SL L  N +S  I+  L  L  L  L L  N
Sbjct: 86  LKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNN 141

Query: 64  NL 65
            +
Sbjct: 142 KI 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             ++  L L+ N LT  I     NLK++  L L  N +   +S+ L  L  L  L+L +N
Sbjct: 64  LPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHN 119

Query: 64  NL 65
            +
Sbjct: 120 GI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            S+  +  +++ +  S+      L ++  L L+ N L+  I   L +L  L  L L  N
Sbjct: 42 LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN 97

Query: 64 NL 65
           +
Sbjct: 98 KI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L  L+L  N ++  I      L  +++L LS N++S  + A LA L  L VL L    
Sbjct: 153 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQE 208

Query: 65  LVGKIP 70
            + K  
Sbjct: 209 CLNKPI 214

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
               L  L +SHN +     S F   + +E LDLS N L         +L     L+LS+
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSF 99

Query: 63  NNL 65
           N  
Sbjct: 100 NAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSS--FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
              V+L  L+LS NA   ++P    FGN+  ++ L LST +L       +A LN   VL 
Sbjct: 87  HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 60  LSYNNLVGKIPTST 73
           +       K     
Sbjct: 146 VLGETYGEKEDPEG 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 2  GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                  LN+S N ++    S   +L  +  L +S N +     +       L  L+LS
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 62 YNNL 65
          +N L
Sbjct: 78 HNKL 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS--GKISAQLASLNFLSVLN 59
            +      L+ S+N LT ++  + G+L  +E+L L  N L    KI+     +  L  L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 60  LSYNNL 65
           +S N++
Sbjct: 381 ISQNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 3   RFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           +  SL  L++S N+++           K + SL++S+N L+  I   L     + VL+L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLH 429

Query: 62  YNNL 65
            N +
Sbjct: 430 SNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 20/63 (31%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
            F ++   N + +            +     LD S N L+  +      L  L  L L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 63  NNL 65
           N L
Sbjct: 358 NQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL-SGKISAQLASLNFLSVLNLSYN 63
             L  L+LSHN L   I        +++ LDLS N   +  I  +  +++ L  L LS  
Sbjct: 69  QELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 64  NL 65
           +L
Sbjct: 126 HL 127

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
           +L  L + +      +       L  + +L +  + L   ++         LS LNLS+N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN 90

Query: 64  NLVGKIPTSTQLQSFSPTS 82
            L      S   ++    S
Sbjct: 91  AL-----ESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L  L +  + L    P +F     +  L+LS N L   +S +      L  L LS N 
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP 114

Query: 65  LV 66
           L 
Sbjct: 115 LH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 1/53 (1%)

Query: 14 HNALTGSIPSSFGNLKHIESLDLSTNNLSGKI-SAQLASLNFLSVLNLSYNNL 65
                         +++  L +        +    L  L  L  L +  + L
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYN 63
           S   L L    L  +IPS +F NL +I  + +S +    ++ +    +L+ ++ + +   
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 64  NLVGKIPTST 73
             +  I    
Sbjct: 91  RNLTYIDPDA 100

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 6   SLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQ--LASLNFLSVLNLSY 62
            +  + + +      I       L  ++ L +    L         + S +   +L ++ 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 63  NNLVGKIPTST 73
           N  +  IP + 
Sbjct: 140 NPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASL-NFLSVLNLSYNN 64
              L L +N  T S+     N   ++++ L+ N     I       + +  S+L++S  +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 65  L 65
           +
Sbjct: 217 V 217

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          L+     +   + ++   LK  + L LSTNN+  KIS+ L+ +  L +L+L  N +
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLI 82

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
              +   L LS N +   I SS   ++++  L L  N +  KI    A  + L  L +SY
Sbjct: 46  TLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 63  NNL 65
           N +
Sbjct: 103 NQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           L+L  N +   I +       +E L +S N ++  +S  +  L  L VL +S N +
Sbjct: 75  LSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNN 64
           +L  L +S+N +  S+ S    L ++  L +S N ++      +LA+L+ L  L L+ N 
Sbjct: 94  TLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151

Query: 65  LVGKIPTSTQLQ 76
           L      +    
Sbjct: 152 LYNDYKENNATS 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNL 60
           G    L  L+LSHN L  S+P     L  +  LD+S N L+  +       L  L  L L
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 61  SYNNL 65
             N L
Sbjct: 132 KGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
            +  L  LNL    LT  +    G L  + +LDLS N L   +     +L  L+VL++S+
Sbjct: 53  PYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 63  NNL 65
           N L
Sbjct: 110 NRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                L+LS N L     ++      +  L+L    L+ K+     +L  L  L+LS+N
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHN 87

Query: 64 NL 65
           L
Sbjct: 88 QL 89

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNL 65
          ++LS N++     +SF  L+ ++ L +        I       L+ L +L L YN  
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSYN 63
            +   +LS + +  ++    F +   +E L L+ N ++ KI       L  L  LNLS N
Sbjct: 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 64  NL 65
            L
Sbjct: 334 FL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 3   RFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           R   L  L +        I + +F  L  +  L L  N      +     L  L VL L+
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 62  YNNL 65
             NL
Sbjct: 112 QCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 5   VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             L  LNLS N L  SI S  F NL  +E LDLS N++          L  L  L L  N
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

Query: 64  NL 65
            L
Sbjct: 382 QL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 3   RFVSLYALNLSHNALTGSI--PSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLN 59
              +L  L L+   L G++   + F  L  +E L L  NN+   + ++   ++    VL+
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 60  LSYNNL 65
           L++N +
Sbjct: 161 LTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 5   VSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKI--SAQLASLNFLSVLNLS 61
            SL  L L +N     + +  F  L ++E L L+  NL G +        L  L +L L 
Sbjct: 79  SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 62  YNNL 65
            NN+
Sbjct: 138 DNNI 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 10  LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69
           L  S N+LT  +P    +LK +   + +   LS            L  L +S N L  K+
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KL 146

Query: 70  PTSTQLQS 77
           P       
Sbjct: 147 PELQNSSF 154

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +     L A+   +N+L   +P    +L   ES+    N L      +L +L FL+ +  
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYA 244

Query: 61  SYNNL 65
             N L
Sbjct: 245 DNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  +   +N L   +P    NL  + ++    N+L  K+     S   L  +    N L
Sbjct: 174 SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL 227

Query: 66  VGKIPTSTQLQS 77
             ++P    L  
Sbjct: 228 E-ELPELQNLPF 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +S+N L   +P    N   ++ +D+  N+L  K+     S   L  +    N L
Sbjct: 132 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL 185

Query: 66  VGKIPTSTQLQS 77
             ++P    L  
Sbjct: 186 E-ELPELQNLPF 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL ++   +N L         NL  + ++    N L   +     SL  L+V +    +L
Sbjct: 216 SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

Query: 66  VGKIPTSTQLQ 76
                + T L 
Sbjct: 273 PELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 14/69 (20%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASL-------------NFLS 56
               + LT  +P    N+K       + +                              
Sbjct: 16 PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 57 VLNLSYNNL 65
           L L+   L
Sbjct: 75 ELELNNLGL 83

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +LY LN S N +  S+     +L   E L++S N L  ++ A       L  L  S+N+L
Sbjct: 298 NLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPR---LERLIASFNHL 349

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ-LASLNFLSVLNLSY 62
            +   L      L      +F     +E +++S N++   I A   ++L  L  + +  
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 63 NNLVGKIPTST 73
           N +  I    
Sbjct: 89 ANNLLYINPEA 99

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSY 62
             ++ +L+LS+N +T    S      ++++L L++N ++  I     +SL  L  L+LSY
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 63  NNL 65
           N L
Sbjct: 110 NYL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L +  + L    P S  +++++  L L        +   +   + +  L L   +L
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 3   RFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNL 60
           R V+L AL L+ N +  +I   SF +L  +E LDLS N LS  +S+     L+ L+ LNL
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131

Query: 61  SYNNL 65
             N  
Sbjct: 132 LGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 5   VSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSY 62
            SL  L+LS+N L+ ++ SS F  L  +  L+L  N       ++  + L  L +L +  
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 63  NNLVGKIP 70
            +   KI 
Sbjct: 159 MDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            L  L + +      I    F  L  +E L++  ++L       L S+  +S L L    
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 65  L 65
            
Sbjct: 210 H 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +   + ++  +L   +      +  +  L+ S N L          L  L  + L  N  
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 6   SLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYN 63
           SL  L      L  S+ +   G+LK ++ L+++ N +      +  ++L  L  L+LS N
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 64  NL 65
            +
Sbjct: 160 KI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSY 62
            S   L+LS N L      SF +   ++ LDLS   +   I      SL+ LS L L+ 
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 63 NNL 65
          N +
Sbjct: 86 NPI 88

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 3   RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            F  L  L+LS   +  +I    + +L H+ +L L+ N +        + L+ L  L   
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  YNNL 65
             NL
Sbjct: 109 ETNL 112

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 3   RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               L  L LSHN +  S+    F   + +E LD+S N L       +ASL     L+LS
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH---LDLS 129

Query: 62  YNNL 65
           +N+ 
Sbjct: 130 FNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL-SGKISAQLASLNFLSVLNLSYN 63
             L  L++SHN L  +I      +  +  LDLS N+     +  +  +L  L+ L LS  
Sbjct: 100 QDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 64  NL 65
             
Sbjct: 157 KF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           S+  LNLS N LTGS+         ++ LDL  N +   I   +  L  L  LN++ N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 2   GRFVSLYALNLSHNALTGSIPSS--FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
               SL  L+LS N     +P    FGNL  +  L LS           L  +  L +  
Sbjct: 118 CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSC 173

Query: 60  LSYNNLVGKIP 70
           +  + +   I 
Sbjct: 174 ILLDLVSYHIK 184

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS--GKISAQLASLNFLSVLN 59
               S   LN + N  T S+      LK +++L L  N L    K++    +++ L  L+
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 60  LSYNNL 65
           +S N+L
Sbjct: 410 VSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 3   RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
            F  +    LS +           +      L+ + N  +  +    ++L  L  L L  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 63  NNL-----VGKIPTSTQ 74
           N L     V  +  +  
Sbjct: 387 NGLKNFFKVALMTKNMS 403

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L +L+L HN ++  I +   +L  +ESL L  N ++  I+  L+ L  L  L+L  N 
Sbjct: 112 KKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 167

Query: 65  L 65
           +
Sbjct: 168 I 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L  L+L  N ++  I      L  +++L LS N++S  + A LA L  L VL L    
Sbjct: 156 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQE 211

Query: 65  LV 66
            +
Sbjct: 212 CL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
             L +L L +N +T    +    L  +++L L  N +S  I   LA L  L  L LS N+
Sbjct: 134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH 189

Query: 65  L 65
           +
Sbjct: 190 I 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +L  L L  N +   + SS  +LK ++SL L  N +S  I+  L  L  L  L L  N
Sbjct: 89  LKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNN 144

Query: 64  NL 65
            +
Sbjct: 145 KI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 3  RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62
           F      NL   ++T     +   L  I+ +  + +++   +   +  L  ++ L L+ 
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 63 NNL 65
          N L
Sbjct: 78 NKL 80

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             ++  L L+ N LT  I     NLK++  L L  N +   +S+ L  L  L  L+L +N
Sbjct: 67  LPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHN 122

Query: 64  NL 65
            +
Sbjct: 123 GI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             S+  +  +++ +  S+      L ++  L L+ N L+  I   LA+L  L  L L  N
Sbjct: 45  LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDEN 100

Query: 64  NL 65
            +
Sbjct: 101 KV 102

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L L +N L      S  +LK++E L +  N L   I   L  L+ L VL+L  N +
Sbjct: 107 CLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +   N  ++ +  S+ +      +++ L LS N +S  +S  L  L  L  L+++ N
Sbjct: 40 LSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRN 95

Query: 64 NL 65
           L
Sbjct: 96 RL 97

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            +    NL   ++T     S   L  +++ +   +N+   ++  +     L  L+LS+N
Sbjct: 18 LANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHN 73

Query: 64 NL 65
           +
Sbjct: 74 QI 75

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
            +L  L++ +N L  SI    G L  +E LDL  N ++      L  L  ++ ++L+   
Sbjct: 128 KNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQK 183

Query: 65  LV 66
            V
Sbjct: 184 CV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           F +L  L+LSHN ++  + S   +L  +E L ++ N L   ++  + S   LS L L  N
Sbjct: 62  FTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNN 116

Query: 64  NL 65
            L
Sbjct: 117 EL 118

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +L  L L  N +T +I S    L +++ L +    +S  ++  LA+L+ L+ L    N
Sbjct: 128 LSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDN 183

Query: 64  NL 65
            +
Sbjct: 184 KI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            +   +    + +T     +  +L  I +L      ++  I   +  LN L  L L  N
Sbjct: 18 LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 64 NL 65
           +
Sbjct: 74 QI 75

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +L  L L  N +T  + +   NL  I  L+LS N L   +SA +A L  +  L+L+  
Sbjct: 62  LNNLIGLELKDNQIT-DL-APLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTST 117

Query: 64  NL 65
            +
Sbjct: 118 QI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L++ +  ++  + +   NL  + +L    N +S  IS  LASL  L  ++L  N +
Sbjct: 152 NLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
              +  L LS N L     S+   L+ I++LDL++  ++  ++  LA L+ L VL L  N
Sbjct: 84  LTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLN 139

Query: 64  NL 65
            +
Sbjct: 140 QI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
             +  L+     +T +I      L ++  L+L  N ++  ++  L +L  ++ L LS N
Sbjct: 40 LDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGN 95

Query: 64 NL 65
           L
Sbjct: 96 PL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  L    N ++  I S   +L ++  + L  N +S  +S  LA+ + L ++ L+   +
Sbjct: 174 KLTTLKADDNKIS-DI-SPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTI 229

Query: 66  VGKIPTSTQLQSFSPTSYEVNKGLYGPPLTN 96
               P         P   +   G    P T 
Sbjct: 230 T-NQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            L  +N S+N +T     +F     +  + L++N L          L  L  L L  N +
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            +   L  L  + N +T ++        ++  L   +N L+   +  +  L  L+ LN  
Sbjct: 61  EKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCD 114

Query: 62  YNNL 65
            N L
Sbjct: 115 TNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  L+   N     +         + +LD S N ++      ++    L+ LN  
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCD 199

Query: 62  YNNL 65
            NN+
Sbjct: 200 TNNI 203

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNL 65
          L L  N  T  +P    N KH+  +DLS N +S  +S Q  +++  L  L LSYN L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 3   RFVSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
            +  L  ++LS+N ++  +   +F  L+ + SL L  N ++    +    L  L +L L+
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 62  YNNL 65
            N +
Sbjct: 113 ANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          + L  N +    P +F   K +  +DLS N +S         L  L+ L L  N +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 5   VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            SL  L L+ N +   +   +F +L ++  L L  N L        + L  +  ++L   
Sbjct: 104 FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQ 161

Query: 64  N 64
           N
Sbjct: 162 N 162

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 10 LNLSHNALT----GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNF-LSVLNL 60
          + L    LT      I S+      +  L+L +N L       +   L + +  +  L+L
Sbjct: 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92

Query: 61 SYNNL 65
              L
Sbjct: 93 QNCCL 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGN-LKH----IESLDLSTNNLSGK----ISAQLASLNFLS 56
           +L  LNL  N L           L+     I+ L L    L+G     +S+ L +L  L 
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 57  VLNLSYNNL 65
            L+LS N L
Sbjct: 117 ELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 6  SLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNL 60
           + +L++    L+          L+  + + L    L+      IS+ L     L+ LNL
Sbjct: 4  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 61 SYNNL 65
            N L
Sbjct: 64 RSNEL 68

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 10  LNLSHNALT----GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNF-LSVLNL 60
           L+L +  LT    G + S+   L  ++ L LS N L       +   L      L  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 61  SYNNL 65
            Y +L
Sbjct: 150 EYCSL 154

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 1  MGRFVSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASL 52
          M RF S+   +L  +A+T     S+ +       ++ + LS N +  +    +S  +AS 
Sbjct: 1  MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 53 NFLSVLNLSYNNL 65
            L +   S    
Sbjct: 60 KDLEIAEFSDIFT 72

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 6   SLYALNLSHNALT-----GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLS 56
            L+ + +  N +        +       + ++ LDL  N  +      ++  L S   L 
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 57  VLNLSYNNL 65
            L L+   L
Sbjct: 248 ELGLNDCLL 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSY 62
                L+L  N L+     +F  L  +  L L+ N L   + A +   L  L  L ++ 
Sbjct: 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 63 NNL 65
          N L
Sbjct: 95 NKL 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.4
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.31
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.2
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.2
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.09
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.03
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.03
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.02
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.01
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.01
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.96
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.76
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.72
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.46
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.34
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.96
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.45

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=1.3e-18  Score=137.21  Aligned_cols=100  Identities=40%  Similarity=0.725  Sum_probs=90.6

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      +.++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|+.+++++|+++|.+|...++.++...
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  732 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA  732 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             ccccCCCCCCCCCCCCCCCCC
Q 046028           82 SYEVNKGLYGPPLTNESQARP  102 (139)
Q Consensus        82 ~~~~n~~~c~~p~~~~~~~~~  102 (139)
                      .|.||+++||.|.. .|....
T Consensus       733 ~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          733 KFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             GGCSCTEEESTTSC-CCCSCC
T ss_pred             HhcCCchhcCCCCc-CCCCCc
Confidence            99999999999876 776443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.58  E-value=1.9e-15  Score=107.97  Aligned_cols=96  Identities=35%  Similarity=0.580  Sum_probs=86.1

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~   80 (139)
                      +..+++|+.|++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.+++++|++++.+|....+.++..
T Consensus       217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~  295 (313)
T 1ogq_A          217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV  295 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCG
T ss_pred             HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccCh
Confidence            35688999999999999866555 88899999999999999999999999999999999999999999999888899999


Q ss_pred             cccccCCCCCCCCCCCCC
Q 046028           81 TSYEVNKGLYGPPLTNES   98 (139)
Q Consensus        81 l~~~~n~~~c~~p~~~~~   98 (139)
                      +.+.+|+++|+.|.. .|
T Consensus       296 l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          296 SAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGTCSSSEEESTTSS-CC
T ss_pred             HHhcCCCCccCCCCC-CC
Confidence            999999999998765 35

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=2.4e-15  Score=100.54  Aligned_cols=92  Identities=29%  Similarity=0.371  Sum_probs=79.8

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.+|... .+.+++.
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            457889999999999998888889999999999999999997777778889999999999999998877665 6788889


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +.+.+|++.|..+
T Consensus       131 L~L~~N~l~c~c~  143 (192)
T 1w8a_A          131 LNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTCCBCCSGG
T ss_pred             EEeCCCCccCcCc
Confidence            9999999888644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=8.1e-15  Score=98.16  Aligned_cols=91  Identities=22%  Similarity=0.216  Sum_probs=77.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|.++..++..+ .+.+++.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            457789999999999997777789999999999999999997777788899999999999999997666544 6788888


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       131 L~L~~N~~~C~c  142 (193)
T 2wfh_A          131 LAIGANPLYCDC  142 (193)
T ss_dssp             EECCSSCEECSG
T ss_pred             EEeCCCCeecCC
Confidence            999999998853

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=2.1e-14  Score=94.30  Aligned_cols=90  Identities=23%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~   82 (139)
                      .++++.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++..+ .+.+++.+.
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            3679999999999998888899999999999999999997777778999999999999999998777644 788999999


Q ss_pred             cccCCCCCCCC
Q 046028           83 YEVNKGLYGPP   93 (139)
Q Consensus        83 ~~~n~~~c~~p   93 (139)
                      +.+|++.|..+
T Consensus       109 L~~N~~~c~c~  119 (170)
T 3g39_A          109 LLNNPWDCACS  119 (170)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCCCCCch
Confidence            99999988653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=98.30  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.+++++|++++..|..+ .+.+++.
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            456677777777777776666667777777777777777776667777777777777777777777666544 5667777


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       158 L~L~~N~l~c~c  169 (220)
T 2v70_A          158 LNLLANPFNCNC  169 (220)
T ss_dssp             EECCSCCEECSG
T ss_pred             EEecCcCCcCCC
Confidence            778888877754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=3.9e-14  Score=93.42  Aligned_cols=89  Identities=21%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSY   83 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~~   83 (139)
                      ++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++.++.. ..+.+++.+.+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            67999999999999888889999999999999999999766666789999999999999999877763 47889999999


Q ss_pred             ccCCCCCCCC
Q 046028           84 EVNKGLYGPP   93 (139)
Q Consensus        84 ~~n~~~c~~p   93 (139)
                      .+|++.|...
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999988643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=3.5e-14  Score=102.33  Aligned_cols=92  Identities=18%  Similarity=0.065  Sum_probs=81.2

Q ss_pred             CCCCCCCcEEeccC-CcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC
Q 046028            1 MGRFVSLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS   79 (139)
Q Consensus         1 l~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~   79 (139)
                      +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++.++..+....|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            35678899999996 99997777889999999999999999999888899999999999999999998877766555588


Q ss_pred             CcccccCCCCCCC
Q 046028           80 PTSYEVNKGLYGP   92 (139)
Q Consensus        80 ~l~~~~n~~~c~~   92 (139)
                      .+.+.+|++.|..
T Consensus       107 ~l~l~~N~~~c~c  119 (347)
T 2ifg_A          107 ELVLSGNPLHCSC  119 (347)
T ss_dssp             EEECCSSCCCCCG
T ss_pred             EEEeeCCCccCCC
Confidence            8999999988853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=5.2e-14  Score=95.93  Aligned_cols=90  Identities=22%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|+|++|.++...+..|..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            445666666666666663333345666667777777777766666666677777777777777776655433 4666777


Q ss_pred             cccccCCCCCC
Q 046028           81 TSYEVNKGLYG   91 (139)
Q Consensus        81 l~~~~n~~~c~   91 (139)
                      +.+.+|++.|.
T Consensus       157 L~L~~N~~~c~  167 (220)
T 2v9t_B          157 MHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCcCCC
Confidence            77777777774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=6.9e-14  Score=107.03  Aligned_cols=92  Identities=23%  Similarity=0.258  Sum_probs=83.1

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-cc-CCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QL-QSF   78 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l-~~l   78 (139)
                      +..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++++.+|... .+ .++
T Consensus       490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L  569 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  569 (635)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred             hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence            3568899999999999998889999999999999999999998888889999999999999999999888765 34 578


Q ss_pred             CCcccccCCCCCCC
Q 046028           79 SPTSYEVNKGLYGP   92 (139)
Q Consensus        79 ~~l~~~~n~~~c~~   92 (139)
                      +.+.+.+|++.|..
T Consensus       570 ~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          570 AFLNLTQNDFACTC  583 (635)
T ss_dssp             CEEECTTCCBCCSG
T ss_pred             CEEEeeCCCCcccC
Confidence            89999999999964

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=2.4e-13  Score=89.38  Aligned_cols=90  Identities=22%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            345666666666666664444445666666666666666665555555666666666666666665544432 4556666


Q ss_pred             cccccCCCCCC
Q 046028           81 TSYEVNKGLYG   91 (139)
Q Consensus        81 l~~~~n~~~c~   91 (139)
                      +.+.+|+..|.
T Consensus       129 L~l~~N~~~~~  139 (177)
T 2o6r_A          129 IWLHTNPWDCS  139 (177)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEecCCCeecc
Confidence            66666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=2e-13  Score=93.52  Aligned_cols=90  Identities=23%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|++++.++... .+.+++.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            34566677777777776444455666777777777777776 566666777777777777777776555433 5667777


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       164 L~l~~N~~~c~c  175 (229)
T 3e6j_A          164 AYLFGNPWDCEC  175 (229)
T ss_dssp             EECTTSCBCTTB
T ss_pred             EEeeCCCccCCc
Confidence            777888777754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.45  E-value=6e-14  Score=110.70  Aligned_cols=92  Identities=30%  Similarity=0.430  Sum_probs=83.1

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      +.+++|+.||+++|+++|.+|..++.+++|+.|++++|+++|.+|..+..+++|+.+|+++|+++|.+|... .+..++.
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            457889999999999999999999999999999999999999999999999999999999999999999875 7788889


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +++..|+.....|
T Consensus       709 L~ls~N~l~g~iP  721 (768)
T 3rgz_A          709 IDLSNNNLSGPIP  721 (768)
T ss_dssp             EECCSSEEEEECC
T ss_pred             EECcCCcccccCC
Confidence            9998886544333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=5.5e-13  Score=89.74  Aligned_cols=90  Identities=27%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l   81 (139)
                      .+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            3455555555555555333333455555555555555555444444555555555555555555444432 234555555


Q ss_pred             ccccCCCCCCC
Q 046028           82 SYEVNKGLYGP   92 (139)
Q Consensus        82 ~~~~n~~~c~~   92 (139)
                      .+.+|++.|..
T Consensus       154 ~l~~N~~~~~~  164 (208)
T 2o6s_A          154 WLHDNPWDCTC  164 (208)
T ss_dssp             ECCSCCBCCCT
T ss_pred             EecCCCeecCC
Confidence            56666555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.43  E-value=4.6e-13  Score=92.65  Aligned_cols=90  Identities=23%  Similarity=0.219  Sum_probs=58.5

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            345666666666666664444445666777777777777765555566667777777777777776555433 5566777


Q ss_pred             cccccCCCCCC
Q 046028           81 TSYEVNKGLYG   91 (139)
Q Consensus        81 l~~~~n~~~c~   91 (139)
                      +.+.+|++.|.
T Consensus       184 L~l~~N~~~c~  194 (251)
T 3m19_A          184 ITLFGNQFDCS  194 (251)
T ss_dssp             EECCSCCBCTT
T ss_pred             EEeeCCceeCC
Confidence            77777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=8.4e-13  Score=92.38  Aligned_cols=92  Identities=27%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            34566666666666666444445566666666666666666555555666667777777777777655543 25666777


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +.+.+|++.|..|
T Consensus       210 L~l~~N~~~~~~~  222 (272)
T 3rfs_A          210 IWLHDNPWDCTCP  222 (272)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCCccccCc
Confidence            7777777766543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.40  E-value=9.6e-13  Score=93.11  Aligned_cols=88  Identities=24%  Similarity=0.146  Sum_probs=44.6

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|++++|++++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|+++..++.......++.+.+
T Consensus       123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence            44444455555544433333344445555555555555433333344455555555555555533333334445666677


Q ss_pred             ccCCCCCC
Q 046028           84 EVNKGLYG   91 (139)
Q Consensus        84 ~~n~~~c~   91 (139)
                      .+|++.|.
T Consensus       203 ~~Np~~C~  210 (290)
T 1p9a_G          203 HGNPWLCN  210 (290)
T ss_dssp             CSCCBCCS
T ss_pred             CCCCccCc
Confidence            78888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=8e-13  Score=90.01  Aligned_cols=86  Identities=23%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|+|++|++++..|..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++..+..+ .+.+++.
T Consensus        53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence            345566666666666665556666666666666666666664444445666666666666666665555443 4556666


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       133 L~L~~N~  139 (220)
T 2v9t_B          133 LSLYDNK  139 (220)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            6665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.39  E-value=6.9e-13  Score=90.32  Aligned_cols=88  Identities=22%  Similarity=0.177  Sum_probs=72.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..+ .+.+++.
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  133 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL  133 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence            457788899999999987666788889999999999999987777778889999999999999988777654 6777888


Q ss_pred             cccccCCCC
Q 046028           81 TSYEVNKGL   89 (139)
Q Consensus        81 l~~~~n~~~   89 (139)
                      +.+.+|...
T Consensus       134 L~L~~N~l~  142 (220)
T 2v70_A          134 LSLYDNQIT  142 (220)
T ss_dssp             EECTTSCCC
T ss_pred             EECCCCcCC
Confidence            888777543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.38  E-value=1.9e-12  Score=90.47  Aligned_cols=91  Identities=21%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus       130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence            345566666666666664433446666666666776666665555556666777777777777765554433 4566677


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       210 L~l~~N~~~c~c  221 (270)
T 2o6q_A          210 LQLQENPWDCTC  221 (270)
T ss_dssp             EECCSSCBCCSS
T ss_pred             EEecCCCeeCCC
Confidence            777777777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=9.6e-13  Score=97.65  Aligned_cols=92  Identities=28%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|++++.++... .+++++.
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            456677777777777766666667777777777777777776667777777777777777777776555442 5667777


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +.+.+|+..|..|
T Consensus       400 L~l~~N~l~~~~~  412 (455)
T 3v47_A          400 IWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCCcccCCC
Confidence            7777887777655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.35  E-value=8e-13  Score=98.17  Aligned_cols=91  Identities=23%  Similarity=0.201  Sum_probs=78.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence            456788888888998887778889999999999999999998778888899999999999999997776654 6788899


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       284 L~L~~Np~~CdC  295 (440)
T 3zyj_A          284 IHLHHNPWNCNC  295 (440)
T ss_dssp             EECCSSCEECSS
T ss_pred             EEcCCCCccCCC
Confidence            999999998854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.35  E-value=1.3e-12  Score=97.27  Aligned_cols=91  Identities=23%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            456788888888888887778889999999999999999998888888999999999999999997776654 6788889


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       295 L~L~~Np~~CdC  306 (452)
T 3zyi_A          295 LHLHHNPWNCDC  306 (452)
T ss_dssp             EECCSSCEECST
T ss_pred             EEccCCCcCCCC
Confidence            999999988864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=2.1e-12  Score=98.94  Aligned_cols=93  Identities=23%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccC-CCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ-SFS   79 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~-~l~   79 (139)
                      +..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|+++..++....+. +++
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA  548 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence            3567889999999999998888889999999999999999998889999999999999999999996555544554 588


Q ss_pred             CcccccCCCCCCCC
Q 046028           80 PTSYEVNKGLYGPP   93 (139)
Q Consensus        80 ~l~~~~n~~~c~~p   93 (139)
                      .+.+.+|++.|..+
T Consensus       549 ~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          549 FFNLTNNSVACICE  562 (606)
T ss_dssp             EEECCSCCCCCSST
T ss_pred             EEEccCCCcccCCc
Confidence            89999999999755

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=4.3e-12  Score=86.81  Aligned_cols=81  Identities=26%  Similarity=0.260  Sum_probs=38.3

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYE   84 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~   84 (139)
                      +|+.|++++|.+++..|..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+++.++..+ .+.+++.+.+.
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            44555555555554444445555555555555555543333334445555555555555554433322 34444444444


Q ss_pred             cC
Q 046028           85 VN   86 (139)
Q Consensus        85 ~n   86 (139)
                      +|
T Consensus       121 ~N  122 (229)
T 3e6j_A          121 CN  122 (229)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.31  E-value=3.3e-12  Score=97.70  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      .++++|+.|||++|+|++..|..|.++++|++|++++|++++..+..|.++.+|++|++++|++++.++.. ..+.+++.
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            45566666666666666444555666666666666666666444455666666666666666666555433 24555666


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       153 L~Ls~N~  159 (635)
T 4g8a_A          153 LNVAHNL  159 (635)
T ss_dssp             EECCSSC
T ss_pred             eccccCc
Confidence            6665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=7.2e-12  Score=86.60  Aligned_cols=85  Identities=24%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++.++..+ .+.+++.
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            345556666666666665555555566666666666666664444455555566666666666554444332 3455555


Q ss_pred             cccccC
Q 046028           81 TSYEVN   86 (139)
Q Consensus        81 l~~~~n   86 (139)
                      +.+.+|
T Consensus       136 L~Ls~N  141 (251)
T 3m19_A          136 LRLNTN  141 (251)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=5.9e-12  Score=84.14  Aligned_cols=84  Identities=30%  Similarity=0.343  Sum_probs=75.4

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSY   83 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~   83 (139)
                      ++++.|++++|.++ .+|..|..+++|+.|++++|++++..+..|..+.+|+.|++++|.+++.++..+ .+.+++.+.+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            57899999999999 888999999999999999999998888889999999999999999998887654 6788899988


Q ss_pred             ccCCCC
Q 046028           84 EVNKGL   89 (139)
Q Consensus        84 ~~n~~~   89 (139)
                      .+|...
T Consensus       110 ~~N~l~  115 (193)
T 2wfh_A          110 HGNDIS  115 (193)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            888654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=1.1e-11  Score=83.41  Aligned_cols=85  Identities=26%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l   81 (139)
                      .+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            4555666666666665333344555666666666666665444444555666666666666665544433 244555555


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|.
T Consensus       130 ~l~~N~  135 (208)
T 2o6s_A          130 RLYQNQ  135 (208)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=1.3e-12  Score=93.18  Aligned_cols=85  Identities=29%  Similarity=0.512  Sum_probs=54.2

Q ss_pred             CCCCCcEEeccC-CcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            3 RFVSLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ++++|+.|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+++++++|.+.+.+|... .+.+++.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            456666666663 66666666666666666666666666666666666666666666666666665555433 4555666


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       154 L~L~~N~  160 (313)
T 1ogq_A          154 ITFDGNR  160 (313)
T ss_dssp             EECCSSC
T ss_pred             EECcCCc
Confidence            6665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=5.4e-12  Score=80.62  Aligned_cols=82  Identities=23%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC--CCCcccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--p~~~~l~~l~~   80 (139)
                      .+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+|..+..+++|+.+++++|.+++..  .....+++++.
T Consensus        40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            445555555555555533  44555555555555555555445555555555555555555555422  22234445555


Q ss_pred             cccccC
Q 046028           81 TSYEVN   86 (139)
Q Consensus        81 l~~~~n   86 (139)
                      +.+.+|
T Consensus       118 L~l~~N  123 (149)
T 2je0_A          118 LDLFNC  123 (149)
T ss_dssp             EECTTC
T ss_pred             EeCcCC
Confidence            555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.28  E-value=3.7e-13  Score=107.18  Aligned_cols=87  Identities=28%  Similarity=0.333  Sum_probs=56.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..+.  ++|+.+++++|++++.+|..  +.++..+.
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~  553 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD  553 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE
Confidence            345566666666666655555666666666666666666644444333  56666677777776666654  34677888


Q ss_pred             cccCCCCCCCC
Q 046028           83 YEVNKGLYGPP   93 (139)
Q Consensus        83 ~~~n~~~c~~p   93 (139)
                      +.+|++.|..+
T Consensus       554 l~~Np~~C~c~  564 (844)
T 3j0a_A          554 ITHNKFICECE  564 (844)
T ss_dssp             EEEECCCCSSS
T ss_pred             ecCCCcccccc
Confidence            89999999543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.28  E-value=6.4e-12  Score=88.98  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-cc-CCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QL-QSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l-~~l~~   80 (139)
                      .+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+..+... .+ .+++.
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  252 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  252 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence            34555555555555554445555555555555555555554444445555555555555555555444432 22 24555


Q ss_pred             cccccCCCCCC
Q 046028           81 TSYEVNKGLYG   91 (139)
Q Consensus        81 l~~~~n~~~c~   91 (139)
                      +.+.+|+..|.
T Consensus       253 L~L~~N~~~~~  263 (306)
T 2z66_A          253 LNLTQNDFACT  263 (306)
T ss_dssp             EECTTCCEECS
T ss_pred             EEccCCCeecc
Confidence            55555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.27  E-value=2.1e-12  Score=90.69  Aligned_cols=84  Identities=24%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+..+++|+.+++++|.+.+..|... .+.+++.+
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            34555555555555554333445555555555555555553333345555555555555555554433322 33344444


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       207 ~l~~n  211 (285)
T 1ozn_A          207 YLFAN  211 (285)
T ss_dssp             ECCSS
T ss_pred             eCCCC
Confidence            44333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=1.1e-11  Score=82.71  Aligned_cols=85  Identities=21%  Similarity=0.228  Sum_probs=74.6

Q ss_pred             CCCcEEeccCCcCCCCCcc-ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS   82 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~   82 (139)
                      .+++.|++++|.+++..+. .|..+++|++|++++|++++..|..+..+.+|+.+++++|++++.++..+ .+.+++.+.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3789999999999965554 48999999999999999998889999999999999999999998888754 788899999


Q ss_pred             cccCCCC
Q 046028           83 YEVNKGL   89 (139)
Q Consensus        83 ~~~n~~~   89 (139)
                      +.+|...
T Consensus       109 L~~N~l~  115 (192)
T 1w8a_A          109 LYDNQIS  115 (192)
T ss_dssp             CCSSCCC
T ss_pred             CCCCcCC
Confidence            9888654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.26  E-value=6.4e-12  Score=95.46  Aligned_cols=92  Identities=26%  Similarity=0.289  Sum_probs=66.6

Q ss_pred             CCCCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028            2 GRFVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~   79 (139)
                      ..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++... .+.+++
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            34667777777777775 4667777777777777777777776667777777788888888887777666543 567777


Q ss_pred             CcccccCCCCCCCC
Q 046028           80 PTSYEVNKGLYGPP   93 (139)
Q Consensus        80 ~l~~~~n~~~c~~p   93 (139)
                      .+.+.+|+..|..+
T Consensus       522 ~L~l~~N~~~~~~~  535 (570)
T 2z63_A          522 KIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEecCCcccCCCc
Confidence            77777887777544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.26  E-value=1.1e-11  Score=89.08  Aligned_cols=87  Identities=22%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+.+.+|... .+.+++.+
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            3778888888888888 78888888888888888888888 456668888888888888888877777654 66777777


Q ss_pred             ccccCCCCCC
Q 046028           82 SYEVNKGLYG   91 (139)
Q Consensus        82 ~~~~n~~~c~   91 (139)
                      .+.+|.....
T Consensus       259 ~L~~n~~~~~  268 (328)
T 4fcg_A          259 ILKDCSNLLT  268 (328)
T ss_dssp             ECTTCTTCCB
T ss_pred             ECCCCCchhh
Confidence            7777655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.26  E-value=8.3e-12  Score=81.27  Aligned_cols=85  Identities=26%  Similarity=0.270  Sum_probs=65.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC--CCCcccCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--p~~~~l~~l~   79 (139)
                      ..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.+++++|.+++..  +....+.+++
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            3567788888888888854  67888888888888888888767777777888888888888888643  3334677777


Q ss_pred             CcccccCCC
Q 046028           80 PTSYEVNKG   88 (139)
Q Consensus        80 ~l~~~~n~~   88 (139)
                      .+.+.+|+.
T Consensus       124 ~L~l~~N~l  132 (168)
T 2ell_A          124 SLDLFNCEV  132 (168)
T ss_dssp             EEECCSSGG
T ss_pred             EEEeeCCcC
Confidence            787777753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.25  E-value=7.4e-12  Score=81.50  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             CCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            4 FVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.+++++|.+.+.+|... .+.+++.+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            466888888888886 67777777888888888888888754  567777888888888888887666554 37777777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       101 ~Ls~N~l  107 (168)
T 2ell_A          101 NLSGNKL  107 (168)
T ss_dssp             ECBSSSC
T ss_pred             eccCCcc
Confidence            7777643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.25  E-value=9.4e-12  Score=83.15  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=58.3

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+.++....+++++.+
T Consensus        85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L  164 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL  164 (197)
T ss_dssp             TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEE
T ss_pred             hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEE
Confidence            45667777777777777666667777777777777777777666777777777777777777632344444456666666


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|.
T Consensus       165 ~l~~n~  170 (197)
T 4ezg_A          165 NIQFDG  170 (197)
T ss_dssp             ECTTBC
T ss_pred             ECCCCC
Confidence            666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=3.7e-11  Score=84.02  Aligned_cols=84  Identities=24%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++... .+.+++.+
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            44555555555555554444445555555555555555554444445555555555555555554444332 34445555


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       163 ~l~~n  167 (272)
T 3rfs_A          163 DLSYN  167 (272)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.24  E-value=2.5e-11  Score=85.84  Aligned_cols=86  Identities=23%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|++++..|..|..+++|+.|++++|+++...+..+..+++|+.+++++|++++.++..+ .+.+++.+
T Consensus        98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            45666677777777765545566677777777777777765555556666777777777777765554443 45666666


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       178 ~L~~N~l  184 (290)
T 1p9a_G          178 LLQENSL  184 (290)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcC
Confidence            6666643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=4e-11  Score=78.69  Aligned_cols=85  Identities=22%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~   82 (139)
                      .++++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            467999999999999666667899999999999999999766677889999999999999999877765 3678889999


Q ss_pred             cccCCC
Q 046028           83 YEVNKG   88 (139)
Q Consensus        83 ~~~n~~   88 (139)
                      +.+|..
T Consensus       107 l~~N~l  112 (177)
T 2o6r_A          107 LDTNQL  112 (177)
T ss_dssp             CCSSCC
T ss_pred             CcCCcc
Confidence            888854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=1.8e-11  Score=88.93  Aligned_cols=84  Identities=27%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+..+..+.+|+.|++++|.+.+..+..+ .+.+|+.+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            34555555555555554444445555555555555555554333444555555555555555554433322 33444444


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       142 ~L~~N  146 (361)
T 2xot_A          142 YLSQN  146 (361)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=2.8e-11  Score=79.26  Aligned_cols=70  Identities=24%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP   70 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p   70 (139)
                      |..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+..+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            4578899999999999996666678999999999999999997777779999999999999999986655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=1.5e-11  Score=89.34  Aligned_cols=68  Identities=25%  Similarity=0.161  Sum_probs=45.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI   69 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~   69 (139)
                      ..+++|+.|+|++|+++...+..|..+++|+.|++++|+++...|..+..+++|+.|++++|.+++.+
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            45667777777777777555555677777777777777777555666666777777777777666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.20  E-value=8e-12  Score=93.42  Aligned_cols=90  Identities=23%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.+++++|++++.++..+ .+.+++.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            457788999999999987777778889999999999999998888889999999999999999997666543 5678888


Q ss_pred             cccccCCCCCC
Q 046028           81 TSYEVNKGLYG   91 (139)
Q Consensus        81 l~~~~n~~~c~   91 (139)
                      +.+.+|++.|.
T Consensus       325 L~l~~N~l~c~  335 (477)
T 2id5_A          325 LILDSNPLACD  335 (477)
T ss_dssp             EECCSSCEECS
T ss_pred             EEccCCCccCc
Confidence            88999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.20  E-value=5.9e-11  Score=82.83  Aligned_cols=86  Identities=24%  Similarity=0.259  Sum_probs=51.1

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      ..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+.++.. ..+.+++.
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            34566667777777666444445566666666666666666555555666666666666666666544432 24455555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       162 L~L~~n~  168 (270)
T 2o6q_A          162 LRLYNNQ  168 (270)
T ss_dssp             EECCSSC
T ss_pred             eEecCCc
Confidence            5555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.20  E-value=5e-12  Score=96.89  Aligned_cols=90  Identities=24%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..++.| .+++++|++++.+|... .+.+++.+
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence            46778888888888887777788888888888888888887788888888888 88888888887766643 56778888


Q ss_pred             ccccCCCCCCCC
Q 046028           82 SYEVNKGLYGPP   93 (139)
Q Consensus        82 ~~~~n~~~c~~p   93 (139)
                      .+.+|++.|..+
T Consensus       553 ~l~~N~~~c~c~  564 (606)
T 3t6q_A          553 NLRQNPLDCTCS  564 (606)
T ss_dssp             ECTTCCEECSGG
T ss_pred             eCCCCCccccCC
Confidence            888998888543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=1.2e-11  Score=79.03  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=68.6

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCcccccCC---C-Cccc
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLVGKIP---T-STQL   75 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~p---~-~~~l   75 (139)
                      +..+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|+.+++++|.+++.++   . ...+
T Consensus        60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  139 (149)
T 2je0_A           60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL  139 (149)
T ss_dssp             CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred             hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence            45788999999999999977888888899999999999999963 34789999999999999999997765   1 2355


Q ss_pred             CCCCCccc
Q 046028           76 QSFSPTSY   83 (139)
Q Consensus        76 ~~l~~l~~   83 (139)
                      ++++.+++
T Consensus       140 ~~L~~L~l  147 (149)
T 2je0_A          140 PQLTYLDG  147 (149)
T ss_dssp             TTCCEETT
T ss_pred             CCcccccC
Confidence            66665544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.20  E-value=2.9e-11  Score=89.65  Aligned_cols=88  Identities=28%  Similarity=0.333  Sum_probs=70.8

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.+++++|.+++..|... .+.+++.
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            457788888888888887777788888888888888888887777888888888888888888887766554 6778888


Q ss_pred             cccccCCCC
Q 046028           81 TSYEVNKGL   89 (139)
Q Consensus        81 l~~~~n~~~   89 (139)
                      +.+.+|...
T Consensus       376 L~L~~N~l~  384 (455)
T 3v47_A          376 LALDTNQLK  384 (455)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCccc
Confidence            888777543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.20  E-value=1.7e-11  Score=95.22  Aligned_cols=91  Identities=22%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             CCCCCCcEEeccCCcCCCCCc-cccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc--ccCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST--QLQSF   78 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~l~~l   78 (139)
                      ..+++|+.|++++|.++ .+| ..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++...  .+.++
T Consensus       533 ~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             cCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            45677888888888888 455 457888888888888888886666667788888888888888887666543  46788


Q ss_pred             CCcccccCCCCCCCC
Q 046028           79 SPTSYEVNKGLYGPP   93 (139)
Q Consensus        79 ~~l~~~~n~~~c~~p   93 (139)
                      +.+.+.+|++.|..+
T Consensus       612 ~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          612 TELDMRFNPFDCTCE  626 (680)
T ss_dssp             SEEECTTCCCCBCCC
T ss_pred             CEEEccCCCcccCCc
Confidence            889999999999765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.19  E-value=1.8e-11  Score=96.32  Aligned_cols=84  Identities=27%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|+|++|.|+ .+|..+..+++|+.|+|++|+++ .+|..+..+.+|+.|++++|.++..+.....+.+|+.+.
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence            3455666666666666 55666666666666666666666 556666666666666666666653332333555566666


Q ss_pred             cccCCC
Q 046028           83 YEVNKG   88 (139)
Q Consensus        83 ~~~n~~   88 (139)
                      +.+|..
T Consensus       323 L~~N~l  328 (727)
T 4b8c_D          323 VEGNPL  328 (727)
T ss_dssp             CTTSCC
T ss_pred             CCCCcc
Confidence            655554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.19  E-value=2.2e-11  Score=87.45  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=78.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      +.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+|... .+.+++.
T Consensus       203 ~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            46788999999999999 577789999999999999999999999999999999999999999888888664 7788889


Q ss_pred             cccccCCCCCCCC
Q 046028           81 TSYEVNKGLYGPP   93 (139)
Q Consensus        81 l~~~~n~~~c~~p   93 (139)
                      +.+.+|+.....|
T Consensus       282 L~L~~n~~~~~iP  294 (328)
T 4fcg_A          282 LDLRGCVNLSRLP  294 (328)
T ss_dssp             EECTTCTTCCCCC
T ss_pred             EeCCCCCchhhcc
Confidence            9998887665444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=2.4e-11  Score=93.29  Aligned_cols=82  Identities=26%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC-CCC-cccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI-PTS-TQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~-p~~-~~l~~l~~   80 (139)
                      .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|++++|.+++.+ |.. ..+.+|+.
T Consensus       461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            4556666666666666 666666666666666666666664 45 5666666666666666666653 333 35566666


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|+
T Consensus       538 L~L~~N~  544 (567)
T 1dce_A          538 LNLQGNS  544 (567)
T ss_dssp             EECTTSG
T ss_pred             EEecCCc
Confidence            6666664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=7.9e-11  Score=82.61  Aligned_cols=86  Identities=24%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CCCCCCcEEeccCCc-CCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028            2 GRFVSLYALNLSHNA-LTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~   79 (139)
                      ..+++|+.|++++|. ++...|..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+.+.++... .+.+++
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            345667777777775 554445666666777777777777665556666666666777777666665554432 455566


Q ss_pred             CcccccCC
Q 046028           80 PTSYEVNK   87 (139)
Q Consensus        80 ~l~~~~n~   87 (139)
                      .+.+.+|.
T Consensus       157 ~L~l~~n~  164 (285)
T 1ozn_A          157 HLFLHGNR  164 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66655553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=4.4e-11  Score=91.68  Aligned_cols=86  Identities=20%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      .++++|+.|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|+++++++|.+.+..+.. ..+.+++.
T Consensus        53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            34556666666666666555555666666666666666666555555666666666666666665444332 24455555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       133 L~L~~n~  139 (606)
T 3vq2_A          133 LNVAHNF  139 (606)
T ss_dssp             EECCSSC
T ss_pred             EeCCCCc
Confidence            5555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=4.9e-11  Score=79.66  Aligned_cols=84  Identities=24%  Similarity=0.329  Sum_probs=72.7

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS   79 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~   79 (139)
                      +..+++|+.|++++|.+++..|..+..+++|+.|++++|+ ++ .+| .+..+++|+.+++++|.+++. +....+++++
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~  184 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLN  184 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCC
Confidence            4578999999999999998888999999999999999998 66 666 689999999999999999864 4555788899


Q ss_pred             CcccccCC
Q 046028           80 PTSYEVNK   87 (139)
Q Consensus        80 ~l~~~~n~   87 (139)
                      .+.+.+|+
T Consensus       185 ~L~l~~N~  192 (197)
T 4ezg_A          185 QLYAFSQT  192 (197)
T ss_dssp             EEEECBC-
T ss_pred             EEEeeCcc
Confidence            99988886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=7.7e-11  Score=77.49  Aligned_cols=70  Identities=24%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP   70 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p   70 (139)
                      |..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+....+
T Consensus        53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            4578999999999999996555567999999999999999996666669999999999999999986554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.15  E-value=5.2e-11  Score=84.77  Aligned_cols=84  Identities=20%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             CCCCCcEEeccCCcCCCCCcccc--CCCcccCeeccccccCCCcchHHhhcC-----CCCCeEEccCCcccccCCCCc-c
Q 046028            3 RFVSLYALNLSHNALTGSIPSSF--GNLKHIESLDLSTNNLSGKISAQLASL-----NFLSVLNLSYNNLVGKIPTST-Q   74 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~l~l~~N~l~~~~p~~~-~   74 (139)
                      .+++|++|++++|.+++..|..+  ..+++|++|++++|++++. |..+..+     ++|+.+++++|++.+.++... .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            46778888888888887777765  7788888888888888765 6666665     778888888888877665443 6


Q ss_pred             cCCCCCcccccCC
Q 046028           75 LQSFSPTSYEVNK   87 (139)
Q Consensus        75 l~~l~~l~~~~n~   87 (139)
                      +.+++.+.+.+|.
T Consensus       172 l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          172 FPALSTLDLSDNP  184 (312)
T ss_dssp             CSSCCEEECCSCT
T ss_pred             CCCCCEEECCCCC
Confidence            6677777776665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=8e-11  Score=82.23  Aligned_cols=63  Identities=24%  Similarity=0.299  Sum_probs=26.0

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+.
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence            334444444444444333333444444444444444444333333444444444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=9.2e-11  Score=88.86  Aligned_cols=87  Identities=24%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc-C-CCCcccCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK-I-PTSTQLQSF   78 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~-~-p~~~~l~~l   78 (139)
                      |.++++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+++++++|.+++. . +....+.++
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            34677788888888888866667788888888888888888877777788888888888888888742 2 233456667


Q ss_pred             CCcccccCC
Q 046028           79 SPTSYEVNK   87 (139)
Q Consensus        79 ~~l~~~~n~   87 (139)
                      +.+.+.+|.
T Consensus       126 ~~L~L~~n~  134 (549)
T 2z81_A          126 QTLRIGNVE  134 (549)
T ss_dssp             CEEEEEESS
T ss_pred             cEEECCCCc
Confidence            777766665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.14  E-value=1e-10  Score=84.46  Aligned_cols=86  Identities=30%  Similarity=0.255  Sum_probs=63.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC-C-CcccCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP-T-STQLQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p-~-~~~l~~l~   79 (139)
                      .++++|+.|++++|.+++..|..|..+++|++|++++|+++...+..+..+++|+.+++++|.+++.++ . ...+.+++
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            457778888888888886666778888888888888888885555557788888888888888875544 2 23567777


Q ss_pred             CcccccCC
Q 046028           80 PTSYEVNK   87 (139)
Q Consensus        80 ~l~~~~n~   87 (139)
                      .+.+.+|.
T Consensus       153 ~L~l~~n~  160 (353)
T 2z80_A          153 ILRVGNMD  160 (353)
T ss_dssp             EEEEEESS
T ss_pred             EEECCCCc
Confidence            77777664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.13  E-value=1.3e-10  Score=88.70  Aligned_cols=63  Identities=22%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCcccccCCCCCCC
Q 046028           29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSYEVNKGLYGP   92 (139)
Q Consensus        29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~~c~~   92 (139)
                      ++|+.|++++|+++ .+|..+..+++|+.+++++|+++..++. ...+.+++.+.+.+|++.|..
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            56777777777777 5666666888888888888888855544 346778888888899888853

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.13  E-value=9e-11  Score=87.38  Aligned_cols=65  Identities=25%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      ++++|+.|+|++|.+++..|..|.++++|+.|++++|+++...+..+..+++|+.|++++|.+..
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            34444444444444444444444444444444444444443333334444444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.13  E-value=1.9e-10  Score=83.92  Aligned_cols=85  Identities=22%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.+++++|.+.+..+... .+.+++.+
T Consensus        91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            44555555555555554444445555555555555555553222234555555555555555554444322 34455555


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|.
T Consensus       171 ~l~~n~  176 (390)
T 3o6n_A          171 QLSSNR  176 (390)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.12  E-value=6.2e-11  Score=90.84  Aligned_cols=84  Identities=15%  Similarity=0.136  Sum_probs=40.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l   81 (139)
                      ++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.+++++|.+++..+.. ..+.+++.+
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence            4445555555555555444455555555555555555555444444555555555555555554432222 233444444


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       135 ~L~~n  139 (606)
T 3t6q_A          135 YLGSN  139 (606)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            44444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=1.7e-10  Score=88.81  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=46.5

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|+|++|.+++..|..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.+.+|..+ .+.+++.
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            345555566666666555444555556666666666666553333334555566666666666655554332 4455555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       176 L~L~~N~  182 (597)
T 3oja_B          176 LQLSSNR  182 (597)
T ss_dssp             EECTTSC
T ss_pred             EECcCCC
Confidence            5555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.12  E-value=8.6e-11  Score=87.82  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      ++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..+..+++|+.|++++|.+.+.++..+ .+.+++.+
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            34455555555555554444445555555555555555543333334444555555555555444433322 33334444


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       134 ~l~~n  138 (477)
T 2id5_A          134 EVGDN  138 (477)
T ss_dssp             EECCT
T ss_pred             ECCCC
Confidence            44333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=4.3e-11  Score=78.56  Aligned_cols=83  Identities=20%  Similarity=0.149  Sum_probs=65.2

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPTS   82 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~l~   82 (139)
                      ++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+...++  ....+.+++.+.
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            3789999999999854  678889999999999999985544556888999999999999975443  334677788888


Q ss_pred             cccCCCC
Q 046028           83 YEVNKGL   89 (139)
Q Consensus        83 ~~~n~~~   89 (139)
                      +.+|+..
T Consensus       120 l~~N~i~  126 (176)
T 1a9n_A          120 ILRNPVT  126 (176)
T ss_dssp             CCSSGGG
T ss_pred             ecCCCCC
Confidence            8888653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=86.28  Aligned_cols=84  Identities=20%  Similarity=0.194  Sum_probs=44.8

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      .++++|+.|+|++|.++...+..|.++++|+.|++++|+++...+..+..+++|+.|++++|.+...++..+ .+.+++.
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            345556666666666654444555566666666666666654444455555666666666666554443222 3344444


Q ss_pred             ccccc
Q 046028           81 TSYEV   85 (139)
Q Consensus        81 l~~~~   85 (139)
                      +.+.+
T Consensus       165 L~l~~  169 (440)
T 3zyj_A          165 LDLGE  169 (440)
T ss_dssp             EECCC
T ss_pred             eCCCC
Confidence            44433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.11  E-value=9e-11  Score=83.04  Aligned_cols=85  Identities=24%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.+++++|.+++..|... .+.+++.
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            45556666666666655555555556666666666665553 345555555566666666666555544332 3445555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       204 L~L~~N~  210 (306)
T 2z66_A          204 LNMSHNN  210 (306)
T ss_dssp             EECTTSC
T ss_pred             EECCCCc
Confidence            5555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.11  E-value=2e-10  Score=86.59  Aligned_cols=85  Identities=29%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (139)
                      ++|+.|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.+++++|+++..++. ...+.+++.+.+
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence            3444444444444433333332  56677777777777 6676666788888888888888854444 335677788888


Q ss_pred             ccCCCCCCC
Q 046028           84 EVNKGLYGP   92 (139)
Q Consensus        84 ~~n~~~c~~   92 (139)
                      .+|+..|..
T Consensus       476 ~~N~~~c~c  484 (520)
T 2z7x_B          476 HTNPWDCSC  484 (520)
T ss_dssp             CSSCBCCCH
T ss_pred             cCCCCcccC
Confidence            888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.10  E-value=5.5e-11  Score=78.05  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCC-cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      .+.+|+.|++++|.++ .+|. +..+ ++|+.|++++|.+++.  ..+..+++|+.+++++|.+++.++.. ..+.+++.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4567888888888888 4554 4444 4888888888888843  56777888888888888888765554 46777788


Q ss_pred             cccccCCC
Q 046028           81 TSYEVNKG   88 (139)
Q Consensus        81 l~~~~n~~   88 (139)
                      +.+.+|..
T Consensus        93 L~L~~N~i  100 (176)
T 1a9n_A           93 LILTNNSL  100 (176)
T ss_dssp             EECCSCCC
T ss_pred             EECCCCcC
Confidence            87777754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.10  E-value=1.9e-10  Score=82.36  Aligned_cols=86  Identities=20%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.++..+.....+.+++.+.+.
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            57888999999998777788888899999999999998777778888889999999999888544444577788888888


Q ss_pred             cCCCCC
Q 046028           85 VNKGLY   90 (139)
Q Consensus        85 ~n~~~c   90 (139)
                      +|....
T Consensus       273 ~N~l~~  278 (332)
T 2ft3_A          273 TNNITK  278 (332)
T ss_dssp             SSCCCB
T ss_pred             CCCCCc
Confidence            776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.10  E-value=1.9e-10  Score=89.17  Aligned_cols=82  Identities=22%  Similarity=0.250  Sum_probs=50.8

Q ss_pred             CCCcEEeccCCcCCCCCccccC--CCcccCeeccccccCCCcchHHhhcCCCCCeEEc------cCCcccccCCCCc-cc
Q 046028            5 VSLYALNLSHNALTGSIPSSFG--NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL------SYNNLVGKIPTST-QL   75 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l------~~N~l~~~~p~~~-~l   75 (139)
                      ++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.+++      ++|++.+.+|... .+
T Consensus       488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l  565 (636)
T 4eco_A          488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC  565 (636)
T ss_dssp             GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred             CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence            36666666666666 5666655  66666666666666664 6666666666666666      3455555555443 45


Q ss_pred             CCCCCcccccCCC
Q 046028           76 QSFSPTSYEVNKG   88 (139)
Q Consensus        76 ~~l~~l~~~~n~~   88 (139)
                      .+++.+.+.+|..
T Consensus       566 ~~L~~L~Ls~N~l  578 (636)
T 4eco_A          566 PSLTQLQIGSNDI  578 (636)
T ss_dssp             SSCCEEECCSSCC
T ss_pred             CCCCEEECCCCcC
Confidence            5666666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.09  E-value=1.8e-10  Score=82.29  Aligned_cols=85  Identities=26%  Similarity=0.206  Sum_probs=71.2

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+...+.....+.+++.+.+.
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            67899999999999777888999999999999999999777778888999999999999998554444577788888888


Q ss_pred             cCCCC
Q 046028           85 VNKGL   89 (139)
Q Consensus        85 ~n~~~   89 (139)
                      +|..-
T Consensus       272 ~N~i~  276 (330)
T 1xku_A          272 NNNIS  276 (330)
T ss_dssp             SSCCC
T ss_pred             CCcCC
Confidence            87643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.08  E-value=1.9e-10  Score=90.54  Aligned_cols=84  Identities=24%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~   80 (139)
                      ..+.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+.+|+.|++++|.++. +|.. ..+.+|+.
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~  297 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKY  297 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSE
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCE
Confidence            45788999999999999 88888889999999999999999 899999999999999999999994 4554 47888999


Q ss_pred             cccccCCC
Q 046028           81 TSYEVNKG   88 (139)
Q Consensus        81 l~~~~n~~   88 (139)
                      +.+.+|..
T Consensus       298 L~L~~N~l  305 (727)
T 4b8c_D          298 FYFFDNMV  305 (727)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCCC
Confidence            99988854

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=1.8e-10  Score=80.46  Aligned_cols=84  Identities=20%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc-CCCC-cccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK-IPTS-TQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~-~p~~-~~l~~l~~   80 (139)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|.+.+. +|.. ..+.+++.
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            455566666666666544445555555555555555555544333455555555555555555432 2222 23344444


Q ss_pred             cccccC
Q 046028           81 TSYEVN   86 (139)
Q Consensus        81 l~~~~n   86 (139)
                      +.+.+|
T Consensus       154 L~Ls~N  159 (276)
T 2z62_A          154 LDLSSN  159 (276)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.06  E-value=1.1e-10  Score=90.60  Aligned_cols=85  Identities=15%  Similarity=0.322  Sum_probs=65.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCC-cchHHhhcC------CCCCeEEccCCcccccCCC---
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSG-KISAQLASL------NFLSVLNLSYNNLVGKIPT---   71 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~l~l~~N~l~~~~p~---   71 (139)
                      ++++|+.|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+      ++|+.+++++|.++ .+|.   
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            68889999999999888999889999999999999998 887 788777665      77788888888777 4554   


Q ss_pred             CcccCCCCCcccccCCC
Q 046028           72 STQLQSFSPTSYEVNKG   88 (139)
Q Consensus        72 ~~~l~~l~~l~~~~n~~   88 (139)
                      ...+.+++.+.+.+|..
T Consensus       326 l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             HTTCTTCCEEECCSCCC
T ss_pred             hccCCCCCEEeCcCCcC
Confidence            33556666666655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.05  E-value=1.6e-10  Score=84.39  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=74.1

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l   81 (139)
                      .+++|+.|++++|.++...+..|..+++|++|++++|++++..|..+..+++|+.+++++|.++..++.. ..+.+++.+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            4688999999999999776778999999999999999999887888899999999999999999666554 467888888


Q ss_pred             ccccCCCC
Q 046028           82 SYEVNKGL   89 (139)
Q Consensus        82 ~~~~n~~~   89 (139)
                      .+.+|...
T Consensus       147 ~L~~n~l~  154 (390)
T 3o6n_A          147 SMSNNNLE  154 (390)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCccC
Confidence            88887543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.05  E-value=2.9e-10  Score=86.34  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=47.5

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~   80 (139)
                      ..+++|+.|++++|++++..|..|..+++|++|++++|+++...|..+..+.+|+.+++++|.+++..+. ...+.+++.
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence            3455666666666666644455566666666666666666544445555566666666666655544332 224445555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+.+|.
T Consensus       129 L~L~~n~  135 (570)
T 2z63_A          129 LNVAHNL  135 (570)
T ss_dssp             EECCSSC
T ss_pred             EecCCCc
Confidence            5554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.04  E-value=2.2e-10  Score=86.35  Aligned_cols=81  Identities=21%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++++.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+++++++|+++.. |.. .+.+++.+.+.
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~-~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCH-PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE-ECC-CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec-Ccc-ccCCccEEecc
Confidence            4566666666666655555666666666666666666655566666666666666666666633 322 45555555555


Q ss_pred             cCC
Q 046028           85 VNK   87 (139)
Q Consensus        85 ~n~   87 (139)
                      +|.
T Consensus        99 ~N~  101 (520)
T 2z7x_B           99 FNA  101 (520)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.04  E-value=4.1e-10  Score=80.61  Aligned_cols=87  Identities=28%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcc-------
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQ-------   74 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~-------   74 (139)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+++..+..+.       
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence            45667777777777777666667777777777777777777 6777777777777777777777765544331       


Q ss_pred             cCCCCCcccccCCCC
Q 046028           75 LQSFSPTSYEVNKGL   89 (139)
Q Consensus        75 l~~l~~l~~~~n~~~   89 (139)
                      ...+..+.+.+|+..
T Consensus       293 ~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          293 RAYYNGISLFNNPVP  307 (332)
T ss_dssp             SCCBSEEECCSSSSC
T ss_pred             cccccceEeecCccc
Confidence            234455666677654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.04  E-value=2.4e-10  Score=91.05  Aligned_cols=86  Identities=23%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHH--hhcCCCCCeEEccCCcccccCCC--CcccCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ--LASLNFLSVLNLSYNNLVGKIPT--STQLQS   77 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~l~l~~N~l~~~~p~--~~~l~~   77 (139)
                      .++++|+.|+|++|.+++..|..|.++++|++|++++|.+++..|..  +..+++|+.|++++|.+.+..+.  ...+.+
T Consensus        70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            45666777777777777666667777777777777777776555543  66667777777777777655442  234555


Q ss_pred             CCCcccccCC
Q 046028           78 FSPTSYEVNK   87 (139)
Q Consensus        78 l~~l~~~~n~   87 (139)
                      |+.+.+.+|.
T Consensus       150 L~~L~Ls~N~  159 (844)
T 3j0a_A          150 LKSIDFSSNQ  159 (844)
T ss_dssp             CCEEEEESSC
T ss_pred             CCEEECCCCc
Confidence            6666555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.04  E-value=4e-10  Score=80.56  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.++ .+|..+.  ++|+.|++++|++++..|..+..+++|+.+++++|.+++..+... .+.+++.
T Consensus       168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            34678888888888888 5665543  788888888888887777888888888888888888887766443 6677888


Q ss_pred             cccccCCCC
Q 046028           81 TSYEVNKGL   89 (139)
Q Consensus        81 l~~~~n~~~   89 (139)
                      +.+.+|...
T Consensus       245 L~L~~N~l~  253 (330)
T 1xku_A          245 LHLNNNKLV  253 (330)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCcCc
Confidence            888777543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.04  E-value=3.5e-10  Score=80.36  Aligned_cols=84  Identities=21%  Similarity=0.278  Sum_probs=57.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCcc----ccCCCcccCeeccccccCCCcchHHhhcC---CCCCeEEccCCcccccCCCCcc
Q 046028            2 GRFVSLYALNLSHNALTGSIPS----SFGNLKHIESLDLSTNNLSGKISAQLASL---NFLSVLNLSYNNLVGKIPTSTQ   74 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~l~l~~N~l~~~~p~~~~   74 (139)
                      ..+++|++|++++|+++ .++.    .+..+++|++|++++|++++..|..+..+   ++|+.+++++|+++. +|....
T Consensus       194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~  271 (310)
T 4glp_A          194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP  271 (310)
T ss_dssp             TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC
T ss_pred             hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc
Confidence            35677888888888876 4443    24567788888888888887667666665   578888888888873 444332


Q ss_pred             cCCCCCcccccCCC
Q 046028           75 LQSFSPTSYEVNKG   88 (139)
Q Consensus        75 l~~l~~l~~~~n~~   88 (139)
                       .+++.+.+.+|..
T Consensus       272 -~~L~~L~Ls~N~l  284 (310)
T 4glp_A          272 -AKLRVLDLSSNRL  284 (310)
T ss_dssp             -SCCSCEECCSCCC
T ss_pred             -CCCCEEECCCCcC
Confidence             5677777776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.03  E-value=5.1e-10  Score=80.32  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++|+.|++++|.++. + +.+..+++|+.|++++|+++..  ..+..+++|+.+++++|.+.+..+... .+.+++.+
T Consensus       241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            45566666666666653 2 3455666666666666666532  235556666666666666655444332 45555556


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|+.
T Consensus       317 ~L~~n~l  323 (347)
T 4fmz_A          317 FLSQNHI  323 (347)
T ss_dssp             ECCSSSC
T ss_pred             EccCCcc
Confidence            6655543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.03  E-value=8.9e-11  Score=83.56  Aligned_cols=65  Identities=22%  Similarity=0.196  Sum_probs=37.3

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCC-----cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNL-----KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      ..+++|+.|++++|++++. |..+..+     ++|++|++++|++++..|..+..+++|+.+++++|++.+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            3455666666666666644 5545444     556666666666655555555556666666666665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.03  E-value=2.9e-10  Score=87.47  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l   81 (139)
                      .+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++.. ..+.+++.+
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            4688999999999999777789999999999999999999888888899999999999999999777665 478888999


Q ss_pred             ccccCCCC
Q 046028           82 SYEVNKGL   89 (139)
Q Consensus        82 ~~~~n~~~   89 (139)
                      .+.+|...
T Consensus       153 ~Ls~N~l~  160 (597)
T 3oja_B          153 SMSNNNLE  160 (597)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCcCC
Confidence            88888643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.03  E-value=3.7e-10  Score=86.09  Aligned_cols=82  Identities=21%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++++.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.++.. |.. .+.+++.+.+.
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~-~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC-PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC-CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc-ccccCCEEECC
Confidence            4577777777777766666777777777777777777766677777777777777777777743 333 56666666666


Q ss_pred             cCCC
Q 046028           85 VNKG   88 (139)
Q Consensus        85 ~n~~   88 (139)
                      +|..
T Consensus       130 ~N~l  133 (562)
T 3a79_B          130 FNDF  133 (562)
T ss_dssp             SSCC
T ss_pred             CCCc
Confidence            6653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=4.4e-10  Score=86.28  Aligned_cols=69  Identities=29%  Similarity=0.294  Sum_probs=63.3

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcc-hHHhhcCCCCCeEEccCCcccccCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI-SAQLASLNFLSVLNLSYNNLVGKIPTS   72 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~p~~   72 (139)
                      +.+++|+.|+|++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.+++++|.+++.+|..
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            568899999999999995 77 8999999999999999999776 999999999999999999999887754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.02  E-value=1.6e-10  Score=79.10  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=44.0

Q ss_pred             CCCCCcEEeccCCc-CCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC-
Q 046028            3 RFVSLYALNLSHNA-LTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS-   79 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~-   79 (139)
                      .+++|+.|++++|+ ++...+..|..+++|++|++++ |+++...+..+..+++|+.+++++|.+++ +|....+.+++ 
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~  131 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDI  131 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCS
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccccc
Confidence            45556666666664 5533334555666666666665 66654444455556666666666665554 33333333443 


Q ss_pred             --CcccccC
Q 046028           80 --PTSYEVN   86 (139)
Q Consensus        80 --~l~~~~n   86 (139)
                        .+.+.+|
T Consensus       132 L~~L~l~~N  140 (239)
T 2xwt_C          132 FFILEITDN  140 (239)
T ss_dssp             EEEEEEESC
T ss_pred             ccEEECCCC
Confidence              4444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.01  E-value=4.2e-10  Score=87.35  Aligned_cols=81  Identities=26%  Similarity=0.299  Sum_probs=36.5

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCcccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE   84 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~~~   84 (139)
                      +++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.+++++|.+++.++.. ..+.+++.+.+.
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            3444555555554333334444445555555555444444444444444444444444444333321 233444444443


Q ss_pred             cC
Q 046028           85 VN   86 (139)
Q Consensus        85 ~n   86 (139)
                      +|
T Consensus       106 ~n  107 (680)
T 1ziw_A          106 SN  107 (680)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.01  E-value=1.7e-10  Score=87.40  Aligned_cols=85  Identities=21%  Similarity=0.146  Sum_probs=76.3

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (139)
                      +++++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+++++++|.+++.++. ...+.+++.+.+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            5799999999999988888999999999999999999988888999999999999999999988776 347888999999


Q ss_pred             ccCCCC
Q 046028           84 EVNKGL   89 (139)
Q Consensus        84 ~~n~~~   89 (139)
                      .+|...
T Consensus       106 s~n~l~  111 (549)
T 2z81_A          106 MGNPYQ  111 (549)
T ss_dssp             TTCCCS
T ss_pred             CCCccc
Confidence            888643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.00  E-value=4.3e-10  Score=80.19  Aligned_cols=85  Identities=22%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|++++|.+++. +. ...+++|+.|++++|+++ .+|..+..+++|+.+++++|.++..++....+.+++.+.+
T Consensus       168 l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             cCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence            56677777777777633 32 234777888888888888 4455578888888888888888865544456778888888


Q ss_pred             ccCCCCCC
Q 046028           84 EVNKGLYG   91 (139)
Q Consensus        84 ~~n~~~c~   91 (139)
                      .+|+..|+
T Consensus       245 ~~N~~~~~  252 (317)
T 3o53_A          245 RGNGFHCG  252 (317)
T ss_dssp             TTCCCBHH
T ss_pred             cCCCccCc
Confidence            88888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=3.1e-10  Score=85.51  Aligned_cols=85  Identities=22%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.+++++|.+++.++....+.++..+.+
T Consensus       168 l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             CCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence            45555566666655533 21 2346777777777777774 444477778888888888888865555456677788888


Q ss_pred             ccCCCCCC
Q 046028           84 EVNKGLYG   91 (139)
Q Consensus        84 ~~n~~~c~   91 (139)
                      .+|+..|+
T Consensus       245 ~~N~l~c~  252 (487)
T 3oja_A          245 RGNGFHCG  252 (487)
T ss_dssp             TTCCBCHH
T ss_pred             CCCCCcCc
Confidence            88888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.7e-10  Score=91.30  Aligned_cols=85  Identities=20%  Similarity=0.338  Sum_probs=68.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCC-cchHHhhcCC-------CCCeEEccCCcccccCCC--
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSG-KISAQLASLN-------FLSVLNLSYNNLVGKIPT--   71 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l~-------~L~~l~l~~N~l~~~~p~--   71 (139)
                      ++++|+.|+|++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+.       +|+.|++++|.+. .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            78899999999999998999999999999999999998 887 7887777665       8888888888888 5555  


Q ss_pred             -CcccCCCCCcccccCCC
Q 046028           72 -STQLQSFSPTSYEVNKG   88 (139)
Q Consensus        72 -~~~l~~l~~l~~~~n~~   88 (139)
                       ...+.+++.+.+.+|..
T Consensus       568 ~l~~L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKV  585 (876)
T ss_dssp             HHTTCTTCCEEECTTSCC
T ss_pred             hhhcCCCCCEEECCCCCc
Confidence             34566677776666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=1.6e-09  Score=86.89  Aligned_cols=83  Identities=23%  Similarity=0.280  Sum_probs=67.3

Q ss_pred             CCCCcEEeccCCcCCCCCccccC--CCcccCeeccccccCCCcchHHhhcCCCCCeEEccC------CcccccCCCCc-c
Q 046028            4 FVSLYALNLSHNALTGSIPSSFG--NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY------NNLVGKIPTST-Q   74 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~------N~l~~~~p~~~-~   74 (139)
                      +++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++      |.+.+.+|... .
T Consensus       727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~  804 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT  804 (876)
T ss_dssp             GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence            448888999999888 7888876  88889999999998885 787888888899988866      77777777654 6


Q ss_pred             cCCCCCcccccCCC
Q 046028           75 LQSFSPTSYEVNKG   88 (139)
Q Consensus        75 l~~l~~l~~~~n~~   88 (139)
                      +.+|+.+.+.+|..
T Consensus       805 L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          805 CPSLIQLQIGSNDI  818 (876)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             CCCCCEEECCCCCC
Confidence            77888888888765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=9.8e-10  Score=79.01  Aligned_cols=80  Identities=18%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             cEEeccCC-cCCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccc
Q 046028            8 YALNLSHN-ALTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYE   84 (139)
Q Consensus         8 ~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~   84 (139)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |++++..+..|..+.+|+.|+|++|++++.+|..+ .+.+|+.+.+.
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789998 898 6888 99999999999996 99998777899999999999999999999888764 78899999998


Q ss_pred             cCCCC
Q 046028           85 VNKGL   89 (139)
Q Consensus        85 ~n~~~   89 (139)
                      +|...
T Consensus        89 ~N~l~   93 (347)
T 2ifg_A           89 FNALE   93 (347)
T ss_dssp             SSCCS
T ss_pred             CCccc
Confidence            88643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.96  E-value=3.8e-10  Score=81.38  Aligned_cols=85  Identities=25%  Similarity=0.230  Sum_probs=73.2

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (139)
                      ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++. ...+.+++.+.+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            5799999999999966666899999999999999999987788899999999999999999976554 346788888988


Q ss_pred             ccCCCC
Q 046028           84 EVNKGL   89 (139)
Q Consensus        84 ~~n~~~   89 (139)
                      .+|...
T Consensus       132 ~~n~l~  137 (353)
T 2z80_A          132 LGNPYK  137 (353)
T ss_dssp             TTCCCS
T ss_pred             CCCCCc
Confidence            888543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.93  E-value=2.3e-09  Score=75.66  Aligned_cols=78  Identities=27%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|++++|++++ + ..+..+++|+.|++++|++++.  ..+..+++|+.+++++|.+++..+ ...+.+++.+.+
T Consensus       111 l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L  185 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL  185 (291)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEEC
Confidence            3344444444444442 1 2333444444444444444422  234444444444444444443332 223334444444


Q ss_pred             ccC
Q 046028           84 EVN   86 (139)
Q Consensus        84 ~~n   86 (139)
                      .+|
T Consensus       186 ~~N  188 (291)
T 1h6t_A          186 SKN  188 (291)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.93  E-value=1.8e-09  Score=76.70  Aligned_cols=81  Identities=19%  Similarity=0.109  Sum_probs=38.0

Q ss_pred             CCcEEeccCCcCCCCCcccc--CCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCCcccccCCCCc-ccCCC
Q 046028            6 SLYALNLSHNALTGSIPSSF--GNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYNNLVGKIPTST-QLQSF   78 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l   78 (139)
                      +|++|++++|.+++..|..+  ..+++|+.|++++|++++..+    ..+..+++|+.+++++|.+.+.++... .+.++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35555555555555555544  455555555555555543322    222334455555555555544443322 34444


Q ss_pred             CCcccccC
Q 046028           79 SPTSYEVN   86 (139)
Q Consensus        79 ~~l~~~~n   86 (139)
                      +.+.+.+|
T Consensus       172 ~~L~Ls~N  179 (310)
T 4glp_A          172 TSLDLSDN  179 (310)
T ss_dssp             CEEECCSC
T ss_pred             CEEECCCC
Confidence            44444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.92  E-value=1.1e-09  Score=82.58  Aligned_cols=83  Identities=24%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhh-cCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.++ ...+.++..+.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~  197 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD  197 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEE
Confidence            45677777777777766677777778888888888888776776665 56677777777776665432 22345555555


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|.
T Consensus       198 Ls~N~  202 (487)
T 3oja_A          198 LSSNK  202 (487)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            55543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.92  E-value=6.2e-10  Score=76.19  Aligned_cols=84  Identities=19%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcCCCCCeEEccC-CcccccCCCCc-ccCCCCCc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSY-NNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~-~l~~l~~l   81 (139)
                      .+++.|++++|++++..+..|..+++|+.|++++|+ ++...+..+..+++|+.+++++ |.+++..+..+ .+.+++.+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478999999999996666689999999999999997 8866666889999999999998 99997776654 67888889


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       111 ~l~~n~l  117 (239)
T 2xwt_C          111 GIFNTGL  117 (239)
T ss_dssp             EEEEECC
T ss_pred             eCCCCCC
Confidence            8888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.91  E-value=3.7e-09  Score=75.13  Aligned_cols=15  Identities=20%  Similarity=0.277  Sum_probs=5.7

Q ss_pred             CCCCCeEEccCCccc
Q 046028           52 LNFLSVLNLSYNNLV   66 (139)
Q Consensus        52 l~~L~~l~l~~N~l~   66 (139)
                      +++|+.+++++|.++
T Consensus       150 l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCccEEEccCCcCC
Confidence            333333333333333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.89  E-value=3.4e-09  Score=75.34  Aligned_cols=60  Identities=23%  Similarity=0.352  Sum_probs=27.0

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      +++|+.|++++|.+++. +. +..+++|+.|++++|++++. +. +..+++|+.+++++|.+++
T Consensus       128 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence            44444444444444422 21 44444455555555544422 22 4444455555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.88  E-value=1.8e-09  Score=76.30  Aligned_cols=84  Identities=24%  Similarity=0.288  Sum_probs=70.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|+.+++++|.+++. +....+.+++.+
T Consensus       131 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L  205 (291)
T 1h6t_A          131 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL  205 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred             cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEE
Confidence            4578899999999999854  678899999999999999996555  88999999999999999864 445577888888


Q ss_pred             ccccCCCCC
Q 046028           82 SYEVNKGLY   90 (139)
Q Consensus        82 ~~~~n~~~c   90 (139)
                      .+.+|+...
T Consensus       206 ~l~~n~i~~  214 (291)
T 1h6t_A          206 ELFSQECLN  214 (291)
T ss_dssp             EEEEEEEEC
T ss_pred             ECcCCcccC
Confidence            888886433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.88  E-value=2.1e-09  Score=83.09  Aligned_cols=79  Identities=27%  Similarity=0.386  Sum_probs=37.6

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|+|++|.+++ + +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+.+.+| ...+.+|+.+.
T Consensus       107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~  181 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY  181 (605)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence            44555555555555552 2 2344555555555555555532  334445555555555555544433 22334444444


Q ss_pred             cccC
Q 046028           83 YEVN   86 (139)
Q Consensus        83 ~~~n   86 (139)
                      +.+|
T Consensus       182 Ls~N  185 (605)
T 1m9s_A          182 LSKN  185 (605)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            4333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.87  E-value=5.1e-09  Score=80.99  Aligned_cols=82  Identities=23%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|+|++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++. +....+.+|+.+
T Consensus       128 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L  202 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL  202 (605)
T ss_dssp             GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred             cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEE
Confidence            3467777888888877744  567777778888888888776555  77777788888888877754 444466677777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|+.
T Consensus       203 ~L~~N~l  209 (605)
T 1m9s_A          203 ELFSQEC  209 (605)
T ss_dssp             ECCSEEE
T ss_pred             EccCCcC
Confidence            7766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.85  E-value=7e-09  Score=72.22  Aligned_cols=78  Identities=29%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|++++|.+++ ++. +..+++|+.|++++|++++ +|.. .. .+|+.+++++|++++. +....+.+++.+.+
T Consensus        62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L  135 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI  135 (263)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEEC
Confidence            3444455555555442 222 4444555555555555442 2221 11 4455555555555432 22334455555555


Q ss_pred             ccCC
Q 046028           84 EVNK   87 (139)
Q Consensus        84 ~~n~   87 (139)
                      .+|.
T Consensus       136 s~N~  139 (263)
T 1xeu_A          136 RNNK  139 (263)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            5554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.84  E-value=3.4e-09  Score=75.48  Aligned_cols=83  Identities=24%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhh-cCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      +++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++|+.+++++|.+++. +....+.+++.+.
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEE
Confidence            45677777777777755566677777777777777777765555553 566777777777776654 2222355555555


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|.
T Consensus       198 Ls~N~  202 (317)
T 3o53_A          198 LSSNK  202 (317)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=5.7e-09  Score=72.69  Aligned_cols=81  Identities=20%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|++++|++++ +|....  ++|+.|++++|++++ ++ .+..+++|+.+++++|++++. +....+.+++.+
T Consensus        82 ~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L  155 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVL  155 (263)
T ss_dssp             TTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEE
T ss_pred             ccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEE
Confidence            456777777777777773 443222  777777777777774 33 467777777777777777754 344456667777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       156 ~L~~N~i  162 (263)
T 1xeu_A          156 DLHGNEI  162 (263)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            7766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.78  E-value=5.9e-09  Score=77.86  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++|+.|++++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.+++++|++++.+| ...+..++.+.+
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  382 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  382 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence            3445555555555543332  44555555555555555532  245555666666666666665555 344555555666


Q ss_pred             ccCCCC
Q 046028           84 EVNKGL   89 (139)
Q Consensus        84 ~~n~~~   89 (139)
                      .+|++.
T Consensus       383 ~~n~~~  388 (466)
T 1o6v_A          383 NDQAWT  388 (466)
T ss_dssp             CCEEEE
T ss_pred             cCCccc
Confidence            555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.76  E-value=2e-08  Score=71.92  Aligned_cols=80  Identities=29%  Similarity=0.382  Sum_probs=52.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|++|++++|.++ .++. +..+++|++|++++|.++. ++ .+..+++|+.+++++|.+.+..+ ...+.+++.+.
T Consensus        64 ~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN  138 (347)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred             hcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence            4567777777777777 3444 7777777777777777763 33 46777777777777777765433 34555666666


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|.
T Consensus       139 l~~n~  143 (347)
T 4fmz_A          139 LGANH  143 (347)
T ss_dssp             CTTCT
T ss_pred             CCCCC
Confidence            65553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.76  E-value=1.8e-08  Score=75.17  Aligned_cols=61  Identities=25%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK   68 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~   68 (139)
                      +++|+.|++++|.+++.. . +..+++|+.|++++|++++..+  +..+++|+.+++++|.+.+.
T Consensus       264 l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          264 LTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            344444444444444222 1 4444444444444444443222  34444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.72  E-value=6.1e-11  Score=79.23  Aligned_cols=60  Identities=28%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.++
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence            3445555555555552 34 4444555555555555554 34444444444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.70  E-value=1.5e-10  Score=77.36  Aligned_cols=85  Identities=21%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~   80 (139)
                      .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.+++++|.+.+..+  ....+.+++.
T Consensus        68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence            4578999999999998 788878888999999999999985 55 68888999999999999985433  2346777888


Q ss_pred             cccccCCCCC
Q 046028           81 TSYEVNKGLY   90 (139)
Q Consensus        81 l~~~~n~~~c   90 (139)
                      +.+.+|+..+
T Consensus       145 L~l~~N~l~~  154 (198)
T 1ds9_A          145 LLLAGNPLYN  154 (198)
T ss_dssp             EEECSCHHHH
T ss_pred             EEecCCcccc
Confidence            8888886544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=2.3e-08  Score=70.02  Aligned_cols=66  Identities=29%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             CCCCCcEEeccCCcCCC--CCccccCCCcccCeeccccccCCCcchHHhhcCC--CCCeEEccCCcccccCC
Q 046028            3 RFVSLYALNLSHNALTG--SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLN--FLSVLNLSYNNLVGKIP   70 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~p   70 (139)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|++++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            36788888888888886  3445667788888888888888854  2334444  88888888888887665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.64  E-value=4.3e-08  Score=73.35  Aligned_cols=63  Identities=25%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP   70 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p   70 (139)
                      ..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.+++++|.+++.++
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            4567777788888877744   36777777788888887775 45  6677777777777777776544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.64  E-value=7.7e-08  Score=71.96  Aligned_cols=79  Identities=27%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|++++|++++ +|  +..+++|+.|++++|++++.   .+..+++|+.+++++|++++ +| ...+.+++.+
T Consensus       167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L  238 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYF  238 (457)
T ss_dssp             TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEE
T ss_pred             ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEE
Confidence            456777888888888874 44  67778888888888888754   37778888888888888887 44 4456677777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       239 ~l~~N~l  245 (457)
T 3bz5_A          239 DCSVNPL  245 (457)
T ss_dssp             ECCSSCC
T ss_pred             EeeCCcC
Confidence            7777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.60  E-value=5.4e-09  Score=74.56  Aligned_cols=60  Identities=25%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             CCCCcEEeccCCcCCCC-CccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028            4 FVSLYALNLSHNALTGS-IPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      +++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+.+++++|
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            34455555555544432 4444444455555555555444444444444444555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.59  E-value=5.8e-08  Score=70.04  Aligned_cols=84  Identities=17%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch-HHhhcCCCCCe-EEccCCcccccCCCCc-ccCCCCCc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS-AQLASLNFLSV-LNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      +++++|+|++|+|+...+..|.++++|+.|++++|++.+.+| ..|.+++++.. +.+.+|+++...|..+ .+.+++.+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            468888888888883333568888888888888888765555 35667777664 5556678877766654 56677777


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus       110 ~l~~n~l  116 (350)
T 4ay9_X          110 LISNTGI  116 (350)
T ss_dssp             EEEEECC
T ss_pred             ccccccc
Confidence            7766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.59  E-value=3.9e-09  Score=76.97  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=63.6

Q ss_pred             CCCCCcEEeccCCcCC----CCCccccCCCcccCeeccccccCCCc----chHHhhc--CCCCCeEEccCCcccc----c
Q 046028            3 RFVSLYALNLSHNALT----GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLAS--LNFLSVLNLSYNNLVG----K   68 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~--l~~L~~l~l~~N~l~~----~   68 (139)
                      .+++|+.|++++|.++    ..+|..+..+++|+.|++++|.+++.    ++..+..  +++|+.+++++|.+.+    .
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            4677888888888875    46777778888888888888888755    4555533  7888888888888886    2


Q ss_pred             CCCCc--ccCCCCCcccccCCCCC
Q 046028           69 IPTST--QLQSFSPTSYEVNKGLY   90 (139)
Q Consensus        69 ~p~~~--~l~~l~~l~~~~n~~~c   90 (139)
                      +|...  .+++++.+.+.+|+.-.
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhcCCCceEEEccCCcCCc
Confidence            44432  35777888887776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.57  E-value=1.2e-07  Score=72.86  Aligned_cols=55  Identities=25%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      ++|+.|++++|.+++ +|. +..  +|+.|++++|++++ +|.   .+++|+.|++++|.+++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            344444444444443 333 322  44444444444443 332   33444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.57  E-value=4.6e-08  Score=75.19  Aligned_cols=75  Identities=25%  Similarity=0.228  Sum_probs=33.5

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCC-------CeEEccCCcccccCCCCcccCCC
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFL-------SVLNLSYNNLVGKIPTSTQLQSF   78 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~l~l~~N~l~~~~p~~~~l~~l   78 (139)
                      +|+.|++++|.+++ +|. +.  ++|+.|++++|+++ .+|. +..  +|       +.+++++|.++..++....+.++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPT  232 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence            44444444444442 333 32  44555555555554 3333 222  34       55555555555332223344455


Q ss_pred             CCcccccCCC
Q 046028           79 SPTSYEVNKG   88 (139)
Q Consensus        79 ~~l~~~~n~~   88 (139)
                      ..+.+.+|+.
T Consensus       233 ~~L~L~~N~l  242 (571)
T 3cvr_A          233 CTIILEDNPL  242 (571)
T ss_dssp             EEEECCSSSC
T ss_pred             CEEEeeCCcC
Confidence            5555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.55  E-value=6.2e-08  Score=69.90  Aligned_cols=72  Identities=21%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             CCCCCCCcEEeccCCcCCCCCcc-ccCCCcccCe-eccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPS-SFGNLKHIES-LDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS   72 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~   72 (139)
                      |.++++|++|+|++|++.+.+|. .|.++++++. +.+..|+++...|..+..+++|+.+++++|.+...++..
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~  123 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH  123 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence            46789999999999998766664 5788988775 567789999777888999999999999999998766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.53  E-value=2.6e-08  Score=72.12  Aligned_cols=64  Identities=36%  Similarity=0.347  Sum_probs=34.7

Q ss_pred             CCcEEeccCCcCCCCCc----cccCCCc-ccCeeccccccCCCcchHHhhcC-----CCCCeEEccCCcccccC
Q 046028            6 SLYALNLSHNALTGSIP----SSFGNLK-HIESLDLSTNNLSGKISAQLASL-----NFLSVLNLSYNNLVGKI   69 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~l~l~~N~l~~~~   69 (139)
                      +|+.|++++|.++...+    ..+..++ +|+.|++++|+++...+..+..+     .+|+.+++++|.+.+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            35666666666554444    4455555 56666666666554445444443     55556666665555433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.49  E-value=2e-07  Score=72.38  Aligned_cols=77  Identities=26%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++|+.|++++|.++ .+|   ..+++|+.|++++|+++ .+|.   .+++|+.+++++|.++..++....+.++..+.+.
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            45666666666666 344   33456666777777666 4444   4566777777777777433333356667777777


Q ss_pred             cCCCC
Q 046028           85 VNKGL   89 (139)
Q Consensus        85 ~n~~~   89 (139)
                      +|+..
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            77643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.49  E-value=2.2e-07  Score=69.46  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..   ..+|+.+++++|.+++ +|....+.+++.+.+.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence            356666666666663 55 46666666666666666663 3332   2355555666555554 3333344444444444


Q ss_pred             cC
Q 046028           85 VN   86 (139)
Q Consensus        85 ~n   86 (139)
                      +|
T Consensus       204 ~N  205 (454)
T 1jl5_A          204 NN  205 (454)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.49  E-value=1.2e-08  Score=72.75  Aligned_cols=64  Identities=25%  Similarity=0.300  Sum_probs=39.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccc-cCCCc-chHHhhcCCCCCeEEccCC-ccc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN-NLSGK-ISAQLASLNFLSVLNLSYN-NLV   66 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~l~l~~N-~l~   66 (139)
                      .+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.+++++| .++
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            4566667777777666556666666666666666666 45532 4445556666666666666 554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.46  E-value=2e-08  Score=72.78  Aligned_cols=84  Identities=29%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             CC-CCcEEeccCCcCCCCCccccCCC-----cccCeeccccccCCCcchHHhhc----C-CCCCeEEccCCcccccCCCC
Q 046028            4 FV-SLYALNLSHNALTGSIPSSFGNL-----KHIESLDLSTNNLSGKISAQLAS----L-NFLSVLNLSYNNLVGKIPTS   72 (139)
Q Consensus         4 l~-~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~l~l~~N~l~~~~p~~   72 (139)
                      ++ +|++|++++|.+++..+..+..+     ++|+.|++++|++++..+..+..    + ++|+.+++++|.+.+..+..
T Consensus        49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            44 67888888888776666666554     77888888888877666654433    3 67778888887776544322


Q ss_pred             c-----c-cCCCCCcccccCC
Q 046028           73 T-----Q-LQSFSPTSYEVNK   87 (139)
Q Consensus        73 ~-----~-l~~l~~l~~~~n~   87 (139)
                      .     . ..+++.+.+.+|.
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCceeEEEccCCc
Confidence            1     1 1355666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.45  E-value=4.6e-08  Score=71.26  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             CCCCCCcEEeccCC---cCCCCCcccc-------CCCcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCcccc
Q 046028            2 GRFVSLYALNLSHN---ALTGSIPSSF-------GNLKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N---~l~g~~p~~~-------~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      ..+++|+.|+|++|   ++++.+|..+       ..+++|++|++++|.+..    .++..+..+++|+.|++++|.+..
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            45677888888775   3444555544       577888888888888876    366777778888888888887753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.38  E-value=1.6e-07  Score=70.21  Aligned_cols=78  Identities=32%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc--cCCCCc-cc------
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG--KIPTST-QL------   75 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~~-~l------   75 (139)
                      ++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+.+|+.+++++|++++  .+|... .+      
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~  388 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL  388 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence            578999999999984 6654   578999999999999 5666   47899999999999998  555543 33      


Q ss_pred             -------CCCCCcccccCCCCC
Q 046028           76 -------QSFSPTSYEVNKGLY   90 (139)
Q Consensus        76 -------~~l~~l~~~~n~~~c   90 (139)
                             .+++.+++.+|+...
T Consensus       389 ~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          389 AEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             ----------------------
T ss_pred             cccccccCcCCEEECCCCcCCc
Confidence                   567888888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.34  E-value=4.7e-07  Score=70.26  Aligned_cols=65  Identities=28%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS   72 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~   72 (139)
                      .+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.+++++|.+++.+|..
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            4678999999999999 6776   6788999999999999 78989999999999999999999877654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.14  E-value=2e-07  Score=69.07  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCcchHHhhc-----CCCCCeEEccCCccc
Q 046028            6 SLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKISAQLAS-----LNFLSVLNLSYNNLV   66 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~l~l~~N~l~   66 (139)
                      +|+.|++++|.+++.    ++..+..+++|+.|++++|+++...+..+..     .++|+.+++++|.++
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            444444444444322    2233333444555555555444332222221     334555555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=2.7e-07  Score=64.57  Aligned_cols=62  Identities=26%  Similarity=0.278  Sum_probs=49.2

Q ss_pred             CCCcccCeeccccccCCC--cchHHhhcCCCCCeEEccCCcccccCCCCcccC--CCCCcccccCCC
Q 046028           26 GNLKHIESLDLSTNNLSG--KISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ--SFSPTSYEVNKG   88 (139)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~--~l~~l~~~~n~~   88 (139)
                      ..+++|+.|+|++|++++  .+|..+..+++|+.|++++|.+++. .....+.  .|+.+.+.+|+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence            457899999999999997  4456778899999999999999965 2222333  778888889873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=7.9e-06  Score=58.29  Aligned_cols=82  Identities=16%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCC-eEEccCCcccccCCCCc-ccCCCCCc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLS-VLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      +++|+.+++++|+++..-+..|.++.+|+.+++++| +...-+.+|.++.+|+ .+++++ .++...+..+ .+.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998444467999999999999998 7755667899999999 999988 6665555544 56677777


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|.
T Consensus       303 ~l~~n~  308 (329)
T 3sb4_A          303 LATGDK  308 (329)
T ss_dssp             EECSSC
T ss_pred             EeCCCc
Confidence            765553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=1.3e-05  Score=57.21  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccC-eeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIE-SLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSF   78 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l   78 (139)
                      |..+.+|+.+++++| ++..-+..|.++.+|+ .+++++ .++...+.+|.++.+|+.++++.|.++...+..+ .+.+|
T Consensus       246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            456889999999998 7745556799999999 999998 7775666889999999999999999986666554 34444


Q ss_pred             CC
Q 046028           79 SP   80 (139)
Q Consensus        79 ~~   80 (139)
                      +.
T Consensus       324 ~~  325 (329)
T 3sb4_A          324 KL  325 (329)
T ss_dssp             CE
T ss_pred             hh
Confidence            43

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.90  E-value=2.2e-06  Score=63.44  Aligned_cols=66  Identities=24%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCC-----CcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCccccc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGN-----LKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVGK   68 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~~   68 (139)
                      .+++|+.|++++|.++...+..+..     .++|+.|++++|+++.    .+|..+..+++|+.+++++|++.+.
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3588999999999998554544432     6799999999999986    6888889999999999999998753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.73  E-value=2.7e-06  Score=62.13  Aligned_cols=83  Identities=23%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             CCCcEEeccCCcCCC----CCccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccCCCC----
Q 046028            5 VSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKIPTS----   72 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~p~~----   72 (139)
                      ++|++|+|++|.++.    .++..+...++|++|++++|.+...    +...+....+|+.|++++|.+.......    
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            456666666666642    1233334556666666666666522    2334455566667777766665321110    


Q ss_pred             -cccCCCCCcccccCC
Q 046028           73 -TQLQSFSPTSYEVNK   87 (139)
Q Consensus        73 -~~l~~l~~l~~~~n~   87 (139)
                       ...++++.+++.+|.
T Consensus       235 L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          235 AREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHCSSCCEEECTTSS
T ss_pred             HHhCCCCCEEeccCCC
Confidence             123455666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=7.7e-06  Score=59.68  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=51.9

Q ss_pred             CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccc
Q 046028            3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      ..++|+.|+|++|.++..    ++..+...++|+.|++++|.++..    +...+...++|+.+++++|.+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            467899999999998742    345667788999999999999843    33445567899999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.68  E-value=1.5e-05  Score=60.66  Aligned_cols=63  Identities=13%  Similarity=0.049  Sum_probs=28.7

Q ss_pred             CCCCcEEeccCCcCCC-CCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +++|+.|++++|.+++ .++..+..+++|+.|++++|.++.. ++.....+++|+.+++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            3445555555555443 2223334445555555555554322 2222334455555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.65  E-value=5.6e-06  Score=63.07  Aligned_cols=82  Identities=5%  Similarity=0.039  Sum_probs=55.7

Q ss_pred             CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCcccccCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVGKIPTSTQ   74 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~   74 (139)
                      .+++|++|++++|.+++.    ++..+..+++|+.|+++.|.+++    .++..+..+++|+.+++++|.+.+.+.....
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            467888999999887655    33345567888888998888873    3444556788899999998887763322224


Q ss_pred             cCCCCCcccc
Q 046028           75 LQSFSPTSYE   84 (139)
Q Consensus        75 l~~l~~l~~~   84 (139)
                      +.+++.+.+.
T Consensus       242 ~~~L~~L~l~  251 (592)
T 3ogk_B          242 AANLEEFCGG  251 (592)
T ss_dssp             CTTCCEEEEC
T ss_pred             hhHHHhhccc
Confidence            4555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.55  E-value=0.00019  Score=44.68  Aligned_cols=57  Identities=26%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             cEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            8 YALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         8 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ..++-+++.++ ..+|..+.  .+++.|+|++|+|+...+..|..+.+|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777888776 35564432  46888899999998655667788888888888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.46  E-value=1e-05  Score=61.55  Aligned_cols=60  Identities=13%  Similarity=0.069  Sum_probs=29.2

Q ss_pred             CcccCeeccccccCCCcchHHh-hcCCCCCeEEccCCcccccCCC--CcccCCCCCcccccCC
Q 046028           28 LKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPTSYEVNK   87 (139)
Q Consensus        28 l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p~--~~~l~~l~~l~~~~n~   87 (139)
                      +++|+.|++++|.+++.....+ ..+++|+.+++++|.+++....  ...+++++.+.+.+|+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            4556666666665543333333 4456666666666665422211  1124455555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.33  E-value=6.7e-05  Score=49.34  Aligned_cols=85  Identities=13%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             CCCCCcEEeccCC-cCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccC----
Q 046028            3 RFVSLYALNLSHN-ALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKI----   69 (139)
Q Consensus         3 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~----   69 (139)
                      ..+.|++|+|++| .+...    +...+...+.|++|++++|.+...    +...+....+|+.|++++|.+...-    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4577888888888 77632    334455667888888888888632    2334555578888888888886321    


Q ss_pred             C-CCcccCCCCCccc--ccCC
Q 046028           70 P-TSTQLQSFSPTSY--EVNK   87 (139)
Q Consensus        70 p-~~~~l~~l~~l~~--~~n~   87 (139)
                      . ......+++.+.+  .+|.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHhCCCceEEEecCCCCC
Confidence            1 1123345666666  4443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.22  E-value=6.5e-05  Score=57.16  Aligned_cols=64  Identities=20%  Similarity=0.230  Sum_probs=41.1

Q ss_pred             CCCCcEEeccCCcCCCCCccccC-CCcccCeeccccc-cCCCc-chHHhhcCCCCCeEEccCCcccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFG-NLKHIESLDLSTN-NLSGK-ISAQLASLNFLSVLNLSYNNLVG   67 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~l~l~~N~l~~   67 (139)
                      +++|+.|++++|.+++..+..+. .+++|+.|++++| .++.. ++.....+++|+.|++++|.+++
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            45677777777777655555554 5677777777776 44321 33444467777888887777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.21  E-value=0.00015  Score=47.59  Aligned_cols=85  Identities=13%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEc--cCCcccccCCC-
Q 046028            3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNL--SYNNLVGKIPT-   71 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l--~~N~l~~~~p~-   71 (139)
                      ..++|++|+|++|.+...    +...+...+.|++|++++|.+...    +...+....+|+.+++  ++|.+...-.. 
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            457899999999998732    234455567899999999998743    3445666788999999  88888732111 


Q ss_pred             ---C-cccCCCCCcccccCC
Q 046028           72 ---S-TQLQSFSPTSYEVNK   87 (139)
Q Consensus        72 ---~-~~l~~l~~l~~~~n~   87 (139)
                         . ....+++.+.+.+|.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeccCCC
Confidence               1 123566677776553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.00043  Score=43.02  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG   43 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~   43 (139)
                      .+++.|+|++|+|+..-+..|..+++|+.|+|.+|.+..
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            369999999999995555668899999999999999864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.08  E-value=7.7e-05  Score=54.27  Aligned_cols=85  Identities=12%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCCCCcEEeccC--CcCCCC-----Ccccc--CCCcccCeeccccccCCCcchHHhh---cCCCCCeEEccCCccccc--
Q 046028            3 RFVSLYALNLSH--NALTGS-----IPSSF--GNLKHIESLDLSTNNLSGKISAQLA---SLNFLSVLNLSYNNLVGK--   68 (139)
Q Consensus         3 ~l~~L~~L~Ls~--N~l~g~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~l~l~~N~l~~~--   68 (139)
                      .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++.+|.+....+..+.   .+++|+.|+++.|.+.+.  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            578899999864  222211     11122  2478999999999988744444443   467899999999998753  


Q ss_pred             --CCCC-cccCCCCCcccccCC
Q 046028           69 --IPTS-TQLQSFSPTSYEVNK   87 (139)
Q Consensus        69 --~p~~-~~l~~l~~l~~~~n~   87 (139)
                        ++.. ..++++..+.+..|.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence              2222 245677777776663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.99  E-value=0.0014  Score=48.23  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=38.1

Q ss_pred             CCCCCcEEeccCCcCC-----CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCC
Q 046028            3 RFVSLYALNLSHNALT-----GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS   77 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~   77 (139)
                      .+++|+.+++.+|.+.     ...+..|.++++|+.+.+.+ .++..-...|.++.+|+.+++..| ++......+.-..
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~  346 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTG  346 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSC
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCC
Confidence            4455555555555443     12233455555566555552 344333345555566666665433 3322233321114


Q ss_pred             CCCcccccC
Q 046028           78 FSPTSYEVN   86 (139)
Q Consensus        78 l~~l~~~~n   86 (139)
                      ++.+.+.+|
T Consensus       347 L~~l~l~~n  355 (401)
T 4fdw_A          347 IKEVKVEGT  355 (401)
T ss_dssp             CCEEEECCS
T ss_pred             CCEEEEcCC
Confidence            555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.98  E-value=0.00022  Score=46.77  Aligned_cols=82  Identities=9%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcC----CCCCeEEccCCc-ccc-cCCCCcccCCC
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASL----NFLSVLNLSYNN-LVG-KIPTSTQLQSF   78 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~l~l~~N~-l~~-~~p~~~~l~~l   78 (139)
                      +|+.||++++.++..--..+..+++|+.|+++++. ++..--..+..+    ++|+.|+++++. ++. .+....++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58899999999875444567889999999999985 553222345543    369999999864 542 11112245667


Q ss_pred             CCcccccCC
Q 046028           79 SPTSYEVNK   87 (139)
Q Consensus        79 ~~l~~~~n~   87 (139)
                      +.+.+.+-+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777765543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.37  E-value=0.0051  Score=45.19  Aligned_cols=59  Identities=20%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      ..+.+|+.++++.|.++ .++.......+|+.+.+..+ +...-...|..+.+|+.+++..
T Consensus       177 ~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             hCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            34566666666666665 33333222455555555533 4433334566666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.33  E-value=0.0011  Score=43.40  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=46.0

Q ss_pred             CCCCCCcEEeccCCc-CCCCCccccCCC----cccCeecccccc-CCCcchHHhhcCCCCCeEEccCCc
Q 046028            2 GRFVSLYALNLSHNA-LTGSIPSSFGNL----KHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSYNN   64 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~N~   64 (139)
                      ..+++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++..--..+..+++|+.|++++..
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            468899999999985 663322345554    479999999975 663333457789999999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.02  E-value=0.0031  Score=45.83  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=31.5

Q ss_pred             CCCCcEEeccCCcCCCCCccccC--CCcccCeecccc--ccCCCc-----chHHh--hcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFG--NLKHIESLDLST--NNLSGK-----ISAQL--ASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~l~l~~N~l~   66 (139)
                      +++|+.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++.+|.+.
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence            45677777766665432222232  566677776642  111111     00111  23567777777766665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.14  E-value=0.057  Score=38.81  Aligned_cols=39  Identities=8%  Similarity=0.037  Sum_probs=21.6

Q ss_pred             ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028           24 SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus        24 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      .|..+.+|+.+.+.++.++..-...|.++.+|+.+++..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            355555666666655555533344555666666666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.01  E-value=0.032  Score=40.52  Aligned_cols=58  Identities=17%  Similarity=0.124  Sum_probs=27.8

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      +.+|+.+.+..+ ++..-...|.++.+|+.+++.++ ++..-..+|.++.+|+.+++..|
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            344555555433 33222334555556666555433 33223345555566666555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.80  E-value=0.028  Score=40.77  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      |..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            346788999999755 66344567999999999999877 66455568999999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.72  E-value=0.049  Score=39.52  Aligned_cols=36  Identities=14%  Similarity=0.324  Sum_probs=15.9

Q ss_pred             cCCCcccCeeccccccCCCcchHHhhcCCCCCeEEcc
Q 046028           25 FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS   61 (139)
Q Consensus        25 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~   61 (139)
                      |.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+.
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            444445555544432 221222344455555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.63  E-value=0.066  Score=38.83  Aligned_cols=64  Identities=11%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      |..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++.++...
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            345778999999765 55344567999999999999765 66455678999999999999887543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.49  E-value=0.02  Score=38.10  Aligned_cols=63  Identities=25%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             CCCCcEEeccCC-cCCC----CCccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHN-ALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N-~l~g----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      -+.|+.|+|++| .+..    .+-..+..-+.|+.|+|++|++...    +-..+..=..|+.|+++.|.+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            357889999985 7652    1334556667899999999998622    2334555578999999999987

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.40  E-value=0.03  Score=40.31  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN   63 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N   63 (139)
                      |..+.+|+.+++.++.++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            345788999999988888455567999999999999765 55344567889999998877543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.45  E-value=0.045  Score=36.41  Aligned_cols=59  Identities=10%  Similarity=0.143  Sum_probs=41.7

Q ss_pred             CCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCC
Q 046028            5 VSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYN   63 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N   63 (139)
                      +.|+.|+|++|.+...    +...+..-+.|++|+|++|.+...--    ..+..-..|+.|++++|
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            5789999999999722    22334455789999999999974322    23444457999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 2e-16
 Identities = 29/66 (43%), Positives = 38/66 (57%)

Query: 29  KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKG 88
           K++  LDL  N + G +   L  L FL  LN+S+NNL G+IP    LQ F  ++Y  NK 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Query: 89  LYGPPL 94
           L G PL
Sbjct: 304 LCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 9e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
           + +   L++LN+S N L G IP   GNL+  +    + N  
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 2   GRFVSLYALNLSHNALTG--SIPSSFGNLKHIESLDLSTN-NLSGKISAQLASLNFLSVL 58
            +   +  L+LS   L     IPSS  NL ++  L +    NL G I   +A L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 59  NLSYNN 64
            +++ N
Sbjct: 107 YITHTN 112

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 6e-11
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
                L  L  ++N ++    SS  NL +I  L    N +S      LA+L  ++ L L+
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 62  YN 63
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
           L  L L  N ++   P    +L  ++ L  + N +S    + LA+L  ++ L+  +N + 
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 67  GKIP 70
              P
Sbjct: 365 DLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           +L  L+L+ N L      +  +L ++  LDL+ N +S      L+ L  L+ L L  N +
Sbjct: 220 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 275

Query: 66  VGKIP 70
               P
Sbjct: 276 SNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN 39
           +    ++  L+  HN ++   P    NL  I  L L+  
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                  L    +T ++  +  +L  + +L      +   I   +  LN L+ +N S N
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 64 NLVGKIP 70
           L    P
Sbjct: 77 QLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 24/101 (23%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLAS--------- 51
           +    +L  L+L++N ++   P     L  +  L L  N +S        +         
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 52  -----------LNFLSVLNLSYNNLVGKIPTS--TQLQSFS 79
                      L  L+ L L +NN+    P S  T+LQ   
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 335

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNN 64
           +  L      +  SI      L ++  ++ S N L+      L +L  L  + ++ N 
Sbjct: 45 QVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 8e-10
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 5  VSLYALNLSHNALTGS-IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLN 59
          + + +L++    L+ +        L+  + + L    L+      IS+ L     L+ LN
Sbjct: 2  LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 60 LSYNNL 65
          L  N L
Sbjct: 62 LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 8e-09
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 6   SLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGKISAQLAS-----LNFLS 56
            L  L L+   ++     S+ ++      +  LDLS N L      QL          L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 57  VLNLSYNNLVGKIP 70
            L L       ++ 
Sbjct: 430 QLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 5e-07
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 6  SLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
              + L    LT      I S+      +  L+L +N L       +          + 
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87

Query: 62 YNNL 65
            +L
Sbjct: 88 KLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 6   SLYALNLSHNALTGSIPSSFG-----NLKHIESLDLSTNNLSGKISAQLASL 52
           SL  L+LS+N L  +               +E L L     S ++  +L +L
Sbjct: 398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 22  PSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNL 65
                    +  L L+  ++S      ++A L + + L  L+LS N L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 8e-09
 Identities = 27/116 (23%), Positives = 39/116 (33%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
               L+L +N +T      F NLK++ +L L  N +S       A L  L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 66  VGKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQARPPELQPSPPPASSDEIDWFF 121
                   +              +        +Q    EL  +P  +S  E   F 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           L  +  S   L   +P           LDL  N ++        +L  L  L L  N +
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 66 VGKIPTS 72
              P +
Sbjct: 68 SKISPGA 74

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
                 L  + ++   +T        +L     L L  N ++   +A L  LN L+ L L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEVNKGLYGPP 93
           S+N++      S          +  N  L   P
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 2   GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
               +L+ L L +N ++   P +F  L  +E L LS N L         +L  L V    
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111

Query: 62  YNNL 65
              +
Sbjct: 112 ITKV 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           SL  LN+S+N L   +P+    L+    L  S N+L+ ++     +L     L++ YN L
Sbjct: 285 SLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNL---KQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 9e-06
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
            + L L++  L+ S+P    +L   ESL  S N+L+ ++     SL  L V N +   L
Sbjct: 39 QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 7e-05
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 4   FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
              L  L  S N L   +P    NLK    L +  N L  +      S+  L + +
Sbjct: 303 PPRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 7e-04
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 11  NLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70
               NA +  I S       +E L++S N L  ++ A       L  L  S+N+L     
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPE 321

Query: 71  TSTQLQSFS 79
               L+   
Sbjct: 322 LPQNLKQLH 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 6e-07
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 2  GRFVSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLN 53
           RF S+   +L  +A+T     S+ +       ++ + LS N +  +    +S  +AS  
Sbjct: 1  ARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 54 FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGLY 90
           L +   S            +       +      L+
Sbjct: 60 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 3e-05
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 11  NLSHNALTGSIPS------SFGNLKHIESLDLSTNNLSGKISAQLAS-----LNFLSVLN 59
            L+   L+    +      S      +++L L  N +       L +     +  L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 60  LSYNNLVGKIPTSTQLQS 77
           L+ N    +     +++ 
Sbjct: 309 LNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 7e-05
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 6   SLYALNLSHNALTGSIPSS-----FGNLKHIESLDLSTNNLS--GKISAQLASL 52
            L  L L +N +      +        +  +  L+L+ N  S    +  ++  +
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 2  GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61
           +  S   +N     LT ++P      K    L LS N L     A L     L+ LNL 
Sbjct: 7  SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 62 YNN 64
             
Sbjct: 64 RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 13  SHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
           ++N LT         L+++++L L  N+L   I       + L    L  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +     L  L    N ++   P    +L ++  + L  N +S      LA+ + L ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 61  S 61
           +
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
            +   +    + +T ++  +  +L  I +L      ++  I   +  LN L  L L  N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 64 NL 65
           +
Sbjct: 74 QI 75

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 7   LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66
                  +N L       F        LD+S   +    S  L +L  L   +    NL 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL- 235

Query: 67  GKIPT 71
            K+PT
Sbjct: 236 KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-05
 Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 6   SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS 42
               L++S   +         NLK + +      NL 
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.003
 Identities = 4/31 (12%), Positives = 10/31 (32%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDL 36
          +   L      L      +F     +E +++
Sbjct: 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.003
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 6  SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          S        + +T  IPS     ++   L      L        +    L  + +S N++
Sbjct: 9  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 66 VGKI 69
          +  I
Sbjct: 66 LEVI 69

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 1   MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL 60
           +    +L  L L+ N       +       ++    S++ +   +  +LA      +  L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR---DLKRL 276

Query: 61  SYNNLVG 67
           + N+L G
Sbjct: 277 AANDLQG 283

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
           V    L+L    +   I +    L   +++D S N +  +       L  L  L ++ N
Sbjct: 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 64 NLVGKIP 70
           +     
Sbjct: 74 RICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 12 LSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65
          L+   +  +  + + N      LDL    +   I    A+L+    ++ S N +
Sbjct: 3  LTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 2   GRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
                +  ++LS++ +   ++         +++L L    LS  I   LA  + L  LN
Sbjct: 43  FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 6  SLYALNLSHNALTGSIP------SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
          S+ A       L G IP      ++   LK  + L LSTNN+  KIS+ L+ +  L +L+
Sbjct: 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILS 76

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 22/103 (21%)

Query: 1   MGRFVSLYALNLSHNALTGSIPS---------------------SFGNLKHIESLDLSTN 39
           + + + +  L+LSHN L    P+                        NL  ++ L L  N
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 40  NL-SGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81
            L        L S   L +LNL  N+L  +     +L    P+
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 5e-04
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA 47
          L+L+H  LT  +      L  +  LDLS N L     A
Sbjct: 3  LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA 38

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 10  LNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLN 59
           L L +N L   +      +   +  L+L  N+L  +   Q      L  ++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
          F      NL   ++T ++  +   L  I+ +  + +++       +  L  ++ L L+ N
Sbjct: 23 FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 64 NLVGKIPTS 72
           L    P +
Sbjct: 79 KLTDIKPLA 87

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 4  FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63
                  L    +T ++  +  +L  + +L      +   I   +  LN L+ +N S N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 72

Query: 64 NLVG 67
           L  
Sbjct: 73 QLTD 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.24
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.23
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.22
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.22
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.6

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=1.1e-15  Score=107.14  Aligned_cols=95  Identities=36%  Similarity=0.588  Sum_probs=85.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++++.+++++|.+.+.+ ..+..+++|+.|++++|+++|.+|..+..+++|+.+++++|+++|.+|....+.++..+
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             cccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence            46788999999999999654 56888999999999999999999999999999999999999999999988788999999


Q ss_pred             ccccCCCCCCCCCCCCC
Q 046028           82 SYEVNKGLYGPPLTNES   98 (139)
Q Consensus        82 ~~~~n~~~c~~p~~~~~   98 (139)
                      .+.+|+.+||.|++ .|
T Consensus       297 ~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         297 AYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GTCSSSEEESTTSS-CC
T ss_pred             HhCCCccccCCCCC-CC
Confidence            99999999998864 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=5.8e-15  Score=97.09  Aligned_cols=91  Identities=30%  Similarity=0.379  Sum_probs=74.7

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|.+....+..|..+++|+.|++++|+++...+..|.++++|+.|++++|++++.++..+ .+.+++.
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            457788888888888887777788888888888888888886667778888889999999999888777665 6778888


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       131 l~L~~N~~~~~~  142 (192)
T d1w8aa_         131 LNLASNPFNCNC  142 (192)
T ss_dssp             EECTTCCBCCSG
T ss_pred             cccccccccccc
Confidence            888888888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.3e-14  Score=90.80  Aligned_cols=91  Identities=19%  Similarity=0.056  Sum_probs=79.0

Q ss_pred             CCCCCCcEEeccCC-cCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028            2 GRFVSLYALNLSHN-ALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~   80 (139)
                      ..++++++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|+.+++++|+++..++..+....+..
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            45788999999766 58866667899999999999999999977788899999999999999999977777676678889


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       108 L~L~~Np~~C~C  119 (156)
T d2ifga3         108 LVLSGNPLHCSC  119 (156)
T ss_dssp             EECCSSCCCCCG
T ss_pred             cccCCCcccCCc
Confidence            999999998853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=5.9e-13  Score=81.77  Aligned_cols=84  Identities=25%  Similarity=0.313  Sum_probs=60.6

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS   79 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~   79 (139)
                      ..+++|++|++++|+++ .+|+.+..+++|+.|++++|+++ .+| .+..+++|+.+++++|++.....  ....+.++.
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            34667888888888887 67777888888888888888887 444 47778888888888888875432  223556677


Q ss_pred             CcccccCCC
Q 046028           80 PTSYEVNKG   88 (139)
Q Consensus        80 ~l~~~~n~~   88 (139)
                      .+.+.+|+.
T Consensus        94 ~L~l~~N~i  102 (124)
T d1dcea3          94 LLNLQGNSL  102 (124)
T ss_dssp             EEECTTSGG
T ss_pred             EEECCCCcC
Confidence            777777753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=90.11  Aligned_cols=90  Identities=23%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+.+++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|+.|++++|+++..++....+.+++.+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            34677888888888888666667788999999999999999877788999999999999999999555555688899999


Q ss_pred             ccccCCCCCC
Q 046028           82 SYEVNKGLYG   91 (139)
Q Consensus        82 ~~~~n~~~c~   91 (139)
                      .+.+|++.|.
T Consensus       201 ~L~~Np~~Cd  210 (266)
T d1p9ag_         201 FLHGNPWLCN  210 (266)
T ss_dssp             ECCSCCBCCS
T ss_pred             EecCCCCCCC
Confidence            9999999996

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=4.8e-12  Score=82.85  Aligned_cols=86  Identities=21%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCcEEeccCCcCCCCC-ccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSI-PSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS   82 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~   82 (139)
                      +++++|+|++|+|+..+ +..|..+++|+.|++++|++....+..+..+.+|+.+++++|++...++..+ .+..++.+.
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            57899999999998644 5668999999999999999998888999999999999999999998888765 688999999


Q ss_pred             cccCCCCC
Q 046028           83 YEVNKGLY   90 (139)
Q Consensus        83 ~~~n~~~c   90 (139)
                      +.+|....
T Consensus       109 L~~N~l~~  116 (192)
T d1w8aa_         109 LYDNQISC  116 (192)
T ss_dssp             CCSSCCCE
T ss_pred             cCCccccc
Confidence            98886543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-12  Score=89.42  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      ..+++|+.|++++|++++..+..|..+++|+.+++++|++++..|..|..+++|+.+++++|.+.+.++..+ .+.+++.
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            345677788888888876666777788888888888888887777778888888888888888876665443 5667788


Q ss_pred             cccccCCCCCCC
Q 046028           81 TSYEVNKGLYGP   92 (139)
Q Consensus        81 l~~~~n~~~c~~   92 (139)
                      +.+.+|++.|..
T Consensus       230 L~l~~N~l~C~C  241 (284)
T d1ozna_         230 LRLNDNPWVCDC  241 (284)
T ss_dssp             EECCSSCEECSG
T ss_pred             EEecCCCCCCCc
Confidence            888888888753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=8.1e-12  Score=76.54  Aligned_cols=78  Identities=29%  Similarity=0.308  Sum_probs=67.4

Q ss_pred             cEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccccCC
Q 046028            8 YALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVNK   87 (139)
Q Consensus         8 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~n~   87 (139)
                      |.|++++|.++ .++ .+..+++|++|++++|+++ .+|..+..+++|+.+++++|.++.. |....+.+++.+.+.+|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence            57999999998 665 4889999999999999999 6787899999999999999999954 556678889999988886


Q ss_pred             CC
Q 046028           88 GL   89 (139)
Q Consensus        88 ~~   89 (139)
                      .-
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.22  E-value=2.5e-12  Score=89.74  Aligned_cols=81  Identities=32%  Similarity=0.454  Sum_probs=43.9

Q ss_pred             CCcEEeccCCcCCC--CCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            6 SLYALNLSHNALTG--SIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      +++.|+|++|.++|  .+|..++++++|++|++++ |+++|.+|..+.++++|++|++++|++.+.++... .+..++.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35556666666555  3455566666666666654 55555566666666666666666666655544432 33334443


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+..|
T Consensus       131 ~l~~N  135 (313)
T d1ogqa_         131 DFSYN  135 (313)
T ss_dssp             ECCSS
T ss_pred             ccccc
Confidence            33333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-11  Score=78.35  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      ++.++++|+|++|+|+ .++..+..+++|+.|++++|+++ .++ .+..+++|+.+++++|.++...+... .+.+++.+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4557888899999888 56766677888889999998888 453 47778888888888888886655443 56777778


Q ss_pred             ccccCCC
Q 046028           82 SYEVNKG   88 (139)
Q Consensus        82 ~~~~n~~   88 (139)
                      .+.+|..
T Consensus        93 ~L~~N~i   99 (162)
T d1a9na_          93 ILTNNSL   99 (162)
T ss_dssp             ECCSCCC
T ss_pred             eeccccc
Confidence            8777754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.2e-11  Score=76.48  Aligned_cols=84  Identities=20%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCC
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP   80 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~   80 (139)
                      .+++|+.||+++|.++ .++ .+..+++|+.|++++|+++...+..+..+++|+.+++++|++.....  ....+++++.
T Consensus        39 ~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             GTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             ccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccch
Confidence            4688999999999998 553 58899999999999999995555556789999999999999985432  2346778888


Q ss_pred             cccccCCC
Q 046028           81 TSYEVNKG   88 (139)
Q Consensus        81 l~~~~n~~   88 (139)
                      +.+.+|+.
T Consensus       117 L~l~~N~i  124 (162)
T d1a9na_         117 LCILRNPV  124 (162)
T ss_dssp             EECCSSGG
T ss_pred             hhcCCCcc
Confidence            88888864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.2e-10  Score=80.77  Aligned_cols=84  Identities=26%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++++.|++++|...+..+..+..++.++.|++++|.+.+..+..+..+++|+.+++++|.++..++....+++++.+.+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEEC
Confidence            34555666666665555555555556666666666666554455555556666666666655543322334555555555


Q ss_pred             ccCC
Q 046028           84 EVNK   87 (139)
Q Consensus        84 ~~n~   87 (139)
                      .+|+
T Consensus       250 s~N~  253 (305)
T d1xkua_         250 HNNN  253 (305)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.3e-10  Score=71.21  Aligned_cols=65  Identities=26%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      |..+++|+.|++++|+|+...|..|..+++|++|++++|+++ .+|.......+|+.+++++|.+.
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            457899999999999999777888999999999999999999 55554444557999999999886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1e-09  Score=75.33  Aligned_cols=86  Identities=22%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP   80 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~   80 (139)
                      .++++|+.|++++|.+....+..+.....|+.+++++|+++...+..+..+.+|+.+++++|++++.++..+ .+.++..
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            345666666666666654445555566666666666666664444556666666666666666665555443 4555555


Q ss_pred             cccccCC
Q 046028           81 TSYEVNK   87 (139)
Q Consensus        81 l~~~~n~   87 (139)
                      +.+..|.
T Consensus       182 l~l~~N~  188 (284)
T d1ozna_         182 LLLHQNR  188 (284)
T ss_dssp             EECCSSC
T ss_pred             hhhhhcc
Confidence            5555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=1.3e-09  Score=77.10  Aligned_cols=78  Identities=21%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +++++.|++++|++++. + .+..+++|+.|++++|+++ .++ .+..+++|+.+++++|++++.+| ...+.+++.+.+
T Consensus       306 ~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         306 LKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             CTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEC
T ss_pred             hcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeC
Confidence            45667777777777743 2 2666777777777777776 344 46777777777777777776544 344556666665


Q ss_pred             ccC
Q 046028           84 EVN   86 (139)
Q Consensus        84 ~~n   86 (139)
                      ..|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=2e-09  Score=74.36  Aligned_cols=88  Identities=27%  Similarity=0.333  Sum_probs=71.2

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-------c
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-------Q   74 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-------~   74 (139)
                      ..++.++.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|+++......+       .
T Consensus       192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~  270 (305)
T d1xkua_         192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  270 (305)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             hccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcc
Confidence            45678899999999999777888889999999999999998 678888999999999999999885433222       3


Q ss_pred             cCCCCCcccccCCCCC
Q 046028           75 LQSFSPTSYEVNKGLY   90 (139)
Q Consensus        75 l~~l~~l~~~~n~~~c   90 (139)
                      ..++..+.+.+|++-+
T Consensus       271 ~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         271 KASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SCCCSEEECCSSSSCG
T ss_pred             cCCCCEEECCCCcCcc
Confidence            4566778888888754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.5e-09  Score=71.54  Aligned_cols=85  Identities=28%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccc------------------------cccCCCcchHHhhcCCCCCeE
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLS------------------------TNNLSGKISAQLASLNFLSVL   58 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~------------------------~n~l~~~~p~~~~~l~~L~~l   58 (139)
                      .+++|+.|++++|+++ ..+..+..+++|+.|+++                        +|.++...+..+..+.+++.+
T Consensus        75 ~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            4555666666666655 334444555555555544                        455554444445566677777


Q ss_pred             EccCCcccccCCCCc-ccCCCCCcccccCCC
Q 046028           59 NLSYNNLVGKIPTST-QLQSFSPTSYEVNKG   88 (139)
Q Consensus        59 ~l~~N~l~~~~p~~~-~l~~l~~l~~~~n~~   88 (139)
                      ++++|++++.++..+ .+.+++.+.+.+|..
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccCccccccccccceeecccCCC
Confidence            777777776665543 466677777766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=1.7e-08  Score=65.87  Aligned_cols=80  Identities=24%  Similarity=0.323  Sum_probs=42.8

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|++|++++|++++. ++ +.++++|+.|++++|.+. .++ .+..++.|+.+++++|..... +....+.++..+.
T Consensus        60 ~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLE  134 (199)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEE
T ss_pred             cCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc-cccchhhhhHHhh
Confidence            355666666666666532 22 556666666666666655 233 255556666666666555532 2223345555555


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|.
T Consensus       135 l~~n~  139 (199)
T d2omxa2         135 LSSNT  139 (199)
T ss_dssp             CCSSC
T ss_pred             hhhhh
Confidence            55553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=3.4e-08  Score=64.93  Aligned_cols=76  Identities=22%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccccc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEV   85 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (139)
                      +++.|++++|.++. ++ .+..+++|+.|++++|++++. + .+..+++|+.+++++|++++ ++....+++++.+.+.+
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-ccccccccccccccccc
Confidence            44555555555542 22 244455555555555555532 2 23445555555555555543 22222334444444433


Q ss_pred             C
Q 046028           86 N   86 (139)
Q Consensus        86 n   86 (139)
                      |
T Consensus       122 ~  122 (210)
T d1h6ta2         122 N  122 (210)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.63  E-value=1.3e-10  Score=76.46  Aligned_cols=80  Identities=23%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCCcc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPTS   82 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~l~   82 (139)
                      ++|+.|++++|.++ .+|..+..++.|+.|++++|+++ .++ .+..+++|+.+++++|+++....  ....+.+++.+.
T Consensus        70 ~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             TTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             ccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhccccccccccCCCccceee
Confidence            44455555555544 33333333344555555555554 222 24455566666666666653221  122455566666


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|+
T Consensus       147 L~~N~  151 (198)
T d1m9la_         147 LAGNP  151 (198)
T ss_dssp             ECSSH
T ss_pred             cCCCc
Confidence            66664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=3.2e-08  Score=65.60  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      +++|+.|++++|.+...  ..+.++++|+.|++++|+++. ++ .+..+++|+.+++++|++++..| ...++.|+.+.
T Consensus       150 ~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT  223 (227)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred             ccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEE
Confidence            45566666666666522  225666666666666666663 33 25566666666666666664332 22344444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=7.6e-08  Score=62.66  Aligned_cols=81  Identities=30%  Similarity=0.404  Sum_probs=64.0

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|+.|++++|.+...  ..+..+++|+.+++++|++. .++ .+..+.+++.+++.+|++++.. ...++++++.+
T Consensus       103 ~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERL  177 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             ccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc-cccCCCCCCEE
Confidence            4678899999999888743  34778899999999999987 444 5788899999999999988643 34567888888


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|+
T Consensus       178 ~ls~N~  183 (199)
T d2omxa2         178 DISSNK  183 (199)
T ss_dssp             ECCSSC
T ss_pred             ECCCCC
Confidence            888875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.56  E-value=1.7e-10  Score=75.90  Aligned_cols=81  Identities=25%  Similarity=0.281  Sum_probs=64.0

Q ss_pred             CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028            3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~   82 (139)
                      .+++|+.|+|++|+++ .++ .+..+++|+.|++++|+++ .+|.....+.+|+.+++++|.++.. +....+.+++.+.
T Consensus        46 ~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSSEEE
T ss_pred             cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccccccc
Confidence            4778999999999998 554 5888999999999999998 5666556667899999999999853 3344566777888


Q ss_pred             cccCC
Q 046028           83 YEVNK   87 (139)
Q Consensus        83 ~~~n~   87 (139)
                      +.+|.
T Consensus       122 L~~N~  126 (198)
T d1m9la_         122 MSNNK  126 (198)
T ss_dssp             ESEEE
T ss_pred             cccch
Confidence            77764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=6.4e-08  Score=68.10  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028            4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~   83 (139)
                      +.++++|+++++.++ .+ +.+..+++|++|++++|+++. ++ .+.++++|+.+++++|++.+..+ ...+.+++.+..
T Consensus        43 l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc-cccccccccccc
Confidence            456888888888887 34 456778888888888888884 43 37788888888888888875443 345556666555


Q ss_pred             ccCC
Q 046028           84 EVNK   87 (139)
Q Consensus        84 ~~n~   87 (139)
                      .++.
T Consensus       118 ~~~~  121 (384)
T d2omza2         118 FNNQ  121 (384)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=6.6e-08  Score=63.50  Aligned_cols=81  Identities=28%  Similarity=0.313  Sum_probs=63.5

Q ss_pred             CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028            2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l   81 (139)
                      ..+++|++|++++|++++ ++ .+..+++|+.|++++|+++ .+| .+..+++|+.+++++|.+.. ++....+..+..+
T Consensus        65 ~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l  139 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESL  139 (210)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEE
T ss_pred             hhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccccccccc-ccccccccccccc
Confidence            457899999999999995 44 3688999999999999998 455 58889999999999998874 3444455566666


Q ss_pred             ccccCC
Q 046028           82 SYEVNK   87 (139)
Q Consensus        82 ~~~~n~   87 (139)
                      .+.+|.
T Consensus       140 ~~~~n~  145 (210)
T d1h6ta2         140 YLGNNK  145 (210)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=1.3e-07  Score=62.58  Aligned_cols=58  Identities=22%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028            1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      +.++++|+.|++++|+++. ++ .+..+++|++|++++|+++. ++ .+..+++|+.+++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            3578999999999999984 44 38899999999999999994 54 388999999999975

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8e-08  Score=60.78  Aligned_cols=65  Identities=28%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             CCCCcEEeccCCcCCCCC--ccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028            4 FVSLYALNLSHNALTGSI--PSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK   68 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~   68 (139)
                      +++|++|+|++|+++..-  +..+..+++|+.|++++|+++...+-.......|+.+++++|.+...
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            455666666666666321  23345566666666666666633222333334566666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.27  E-value=9.4e-07  Score=61.04  Aligned_cols=54  Identities=33%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ++|++|++++|+++ .+|..   +++|+.|++++|+++ .+|.   .+.+|+.+++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC
Confidence            44555555555555 44432   344555555555555 3332   1334555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.1e-07  Score=59.91  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch-HHhhcCCCCCeEEcc-CCcccccCCCCc-ccCCCCCc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS-AQLASLNFLSVLNLS-YNNLVGKIPTST-QLQSFSPT   81 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~l~l~-~N~l~~~~p~~~-~l~~l~~l   81 (139)
                      +++++|++++|+++...+..|.++++|++|++++|.+...++ ..|..+..++.+.+. .|.+....+..+ .++.++.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            367888888888874334457788888888888887765443 346666777777664 355555555443 45566666


Q ss_pred             ccccC
Q 046028           82 SYEVN   86 (139)
Q Consensus        82 ~~~~n   86 (139)
                      .+.+|
T Consensus       109 ~l~~~  113 (242)
T d1xwdc1         109 LISNT  113 (242)
T ss_dssp             EEESC
T ss_pred             ccchh
Confidence            66554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.10  E-value=9.3e-06  Score=55.85  Aligned_cols=74  Identities=27%  Similarity=0.291  Sum_probs=36.0

Q ss_pred             CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028            5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (139)
                      ++|++|++++|+|+ .+|..+   .+|+.|++++|+++ .++..   .+.|+++++++|.+.. +|....+..++.+.+.
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccccccccc-ccchhhhccceeeccc
Confidence            34455555555555 444332   23444444444444 22210   1246677777777663 3444455566666554


Q ss_pred             cCC
Q 046028           85 VNK   87 (139)
Q Consensus        85 ~n~   87 (139)
                      ++.
T Consensus       129 ~~~  131 (353)
T d1jl5a_         129 NNS  131 (353)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.8e-08  Score=61.11  Aligned_cols=65  Identities=25%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             CCCcccCeeccccccCCCcc--hHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCcccccCCCCC
Q 046028           26 GNLKHIESLDLSTNNLSGKI--SAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEVNKGLY   90 (139)
Q Consensus        26 ~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~~~c   90 (139)
                      ..+++|+.|++++|+++...  +..+..+++|+.+++++|.++...+-. .....+..+.+.+|+..+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            35788999999999998543  456778999999999999998544311 234467788888887643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.1e-06  Score=54.88  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             CCcEEeccCCcCCCCCccccCCCcccCee-ccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028            6 SLYALNLSHNALTGSIPSSFGNLKHIESL-DLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS   82 (139)
Q Consensus         6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L-~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~   82 (139)
                      .++.|++++|+++ .++.......+++.+ ++.+|+++...+..|..+++|+.+++++|+++..++... .+..++.+.
T Consensus       154 ~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            5667888888888 444444445555444 567788884444557888899999999998885544332 344444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00011  Score=49.68  Aligned_cols=58  Identities=29%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCCcEEeccCC--cCCCC-CccccCCCcccCeeccccc-cCCCcchHHhhcCCCCCeEEccC
Q 046028            5 VSLYALNLSHN--ALTGS-IPSSFGNLKHIESLDLSTN-NLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus         5 ~~L~~L~Ls~N--~l~g~-~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      ++|+.|+++++  .++.. +...+..+++|++|+++++ .++......+.++++|+++++++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCC
Confidence            45666666643  22211 1122234566666666654 34544445556666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=5.4e-05  Score=53.52  Aligned_cols=62  Identities=27%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             CCCcEEeccCCcCCCC----CccccC-CCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028            5 VSLYALNLSHNALTGS----IPSSFG-NLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~----~p~~~~-~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      .+|++|+|++|.++..    ++..+. ....|++|++++|.++..    +...+...++|++|++++|.++
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3566666666665421    222222 234566666666666522    2233444566666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=7.8e-05  Score=50.53  Aligned_cols=58  Identities=26%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             CCCcEEeccCCcCCCC-CccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028            5 VSLYALNLSHNALTGS-IPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY   62 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~   62 (139)
                      .+|+.||++++.++.. +...+..+++|++|+++++.++...+..+..+++|+.+++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3455555555555422 223344555555555555555544444555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=6e-05  Score=53.25  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             CCCCcEEeccCCcCCC----CCccccCCCcccCeeccccccCC
Q 046028            4 FVSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLS   42 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~l~~n~l~   42 (139)
                      ++++++|+|++|.++-    .+...+...++|+.|++++|+++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            3455556666655541    12223345555566666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.88  E-value=0.00015  Score=50.17  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             CCCcEEeccCCcCCCC-----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028            5 VSLYALNLSHNALTGS-----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         5 ~~L~~L~Ls~N~l~g~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +.++.|++++|.++..     +...+...++|+.|++++|.++..    +...+..+++|+.+++++|.+.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            4455555555555421     112234445555555555554311    2223344555555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.74  E-value=0.00029  Score=48.62  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCcchHH----hhc--CCCCCeEEccCCccc
Q 046028            4 FVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKISAQ----LAS--LNFLSVLNLSYNNLV   66 (139)
Q Consensus         4 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~--l~~L~~l~l~~N~l~   66 (139)
                      .++|+.|++++|.++..    +...+...++|++|++++|.++..-...    +..  ...|+.+++++|++.
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            45566666666665421    2234455566666666666665332222    222  234666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.27  E-value=0.001  Score=41.33  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=55.3

Q ss_pred             CCCCCcEEeccCC-cCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccCCC--
Q 046028            3 RFVSLYALNLSHN-ALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKIPT--   71 (139)
Q Consensus         3 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~p~--   71 (139)
                      +.++|++|+|+++ .++..    +-..+...+.|+.|++++|.+...    +...+...+.|+.+++++|.+...--.  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3578999999874 46522    223455678899999999988622    223455678899999999988732111  


Q ss_pred             ---CcccCCCCCcccccCC
Q 046028           72 ---STQLQSFSPTSYEVNK   87 (139)
Q Consensus        72 ---~~~l~~l~~l~~~~n~   87 (139)
                         ...-.+++.+.+.+|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence               1123456667776553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.10  E-value=0.0027  Score=39.36  Aligned_cols=64  Identities=8%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             CCCCCcEEeccCCcCCC----CCccccCCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCCccc
Q 046028            3 RFVSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         3 ~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N~l~   66 (139)
                      ..++|+.|++++|.+..    .+...+...+.|+.|++++|.+...--    ..+..-.+|+.+++++|...
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            34678899999998862    222344456789999999998874321    23555678999999888654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.16  E-value=0.03  Score=34.16  Aligned_cols=64  Identities=14%  Similarity=0.140  Sum_probs=45.1

Q ss_pred             CCCCCcEEeccC-CcCCCC----CccccCCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCCccc
Q 046028            3 RFVSLYALNLSH-NALTGS----IPSSFGNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYNNLV   66 (139)
Q Consensus         3 ~l~~L~~L~Ls~-N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N~l~   66 (139)
                      +.++|++|++++ +.++..    +-..+...++|+.|++++|.+...--    ..+....+++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            457899999987 456521    22345577889999999998864322    23455678999999988775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.60  E-value=0.044  Score=33.34  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             CCCCCCcEEeccCCcCCCCCc----cccCCCcccCeeccccccCCCcc----hHHhhcCCCCCeEEcc--CCccc
Q 046028            2 GRFVSLYALNLSHNALTGSIP----SSFGNLKHIESLDLSTNNLSGKI----SAQLASLNFLSVLNLS--YNNLV   66 (139)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~l~l~--~N~l~   66 (139)
                      ...++|++|++++|.++...-    ..+...+.++.+++++|.+...-    -..+...++|+.++++  +|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            356789999999999874322    23455688999999999886332    2345666788876664  55554