Citrus Sinensis ID: 046049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccccccccccccEEEccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccccccccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHcccHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEEccccc
Coil and Loop (DISEMBL)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAkislpfwqlldseenvnrpdiseILEDINYFVQESEEAIDAFFINIMQqqnsesttCKARLVGLHSKIIDIRNrmeqlppsdndfdinERRDKLIHLLIegqprvdesefERGREELFDLLiegpprlsVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIksvmppsrvsviigedyQLKKSILRDYLTDKKYFIVLDDVFDD
Flexible Loop (DISEMBL)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIdirnrmeqlppsdndfdINERRDKLIHLLIegqprvdesefERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSvmppsrvsviigedyqlKKSILrdyltdkkyfIVLDDVFDD
Low Complexity Region (SEG)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD
Disordered region (IsUnstruct)
******EIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRN******************DKLIHLLIEG************REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF**
Disordered Region (DISOPRED)
**LTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINI*****************LHSKIIDIRNRMEQLPPSD*************************SEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV****************KKSILRDYLTDKKYFIVLDDVFDD
Disordered Region (DISEMBL)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD
Disordered Region (DISPRO)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NLLTESEIITALLGNYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q39214	926	Disease resistance protei	yes	no	0.413	0.116	0.263	0.0003
Q7XBQ9	970	Disease resistance protei	N/A	no	0.777	0.209	0.213	0.0005
Q9SX38	857	Putative disease resistan	no	no	0.716	0.218	0.273	0.0005
Q38834	852	Disease resistance RPP13-	no	no	0.348	0.106	0.282	0.0008

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY 208
           + +L   L+   P+  VVA++   G   T  +A+ F +  V+ +F+ +AWV   ++S +Y
Sbjct: 179 KGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWV---TISKSY 235

Query: 209 DFGKILDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTDKKYFIVLDDVF 259
               +   +IK     +   +   +    Y+     L +YL  K+Y +VLDDV+
Sbjct: 236 VIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVW 289

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 100/229 (43%), Gaps = 26/229 (11%)

Query: 48  EENVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKII--- 104
           E+ +N   +   L+ +N    E ++ +D +     +   SE      +++    K+    
Sbjct: 50  EKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGRYHPKVIPFRHKVGKRM 109

Query: 105 -DIRNRMEQLPPSDNDFDINER-------RDKLIHLLIEGQPRVDESEFERGREELFDLL 156
             +  +++ +     +F ++E+       R +   +L E Q    + E    ++E+  +L
Sbjct: 110 DQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVLTEPQVYGRDKE----KDEIVKIL 165

Query: 157 IEG---PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKI 213
           I        LSV+ IL   G   T  A   FN+  V  +F    W+    VS  +D  ++
Sbjct: 166 INNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWI---CVSEDFDEKRL 222

Query: 214 LDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTDKKYFIVLDDVFDD 261
           +  I++S+        ++GE D    +  L++ L  K+Y +VLDDV+++
Sbjct: 223 IKAIVESI----EGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNE 267

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 25/212 (11%)

Query: 69  ESEEAIDAFFINIMQQQNSESTTCKARL-------VGLHS---KIIDIRNRMEQLPPSDN 118
           ++E+ ++AFF+    ++         RL       V LHS   +I +I +R+ ++  S  
Sbjct: 71  DAEDILEAFFLKAESRKQKGMKRVLRRLACILNEAVSLHSVGSEIREITSRLSKIAASML 130

Query: 119 DFDINERRDK----LIHLLIEGQ---PRVDESEF---ERGREELFDLLIEGPPRLSVVAI 168
           DF I E   +    L   L E +   P V E      E+  E+L + L+ G  +L V +I
Sbjct: 131 DFGIKESMGREGLSLSDSLREQRQSFPYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSI 190

Query: 169 LDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS 228
               G   T  A   F+++ V+ +FD  AWV    VS       +  DI  ++       
Sbjct: 191 CGMGGLGKTTLAKQIFHHHKVRRHFDRFAWV---YVSQDCRRRHVWQDIFLNLSYKDENQ 247

Query: 229 VIIG-EDYQLKKSILRDYLTDKKYFIVLDDVF 259
            I+   D QL + + R +L   K  IVLDD++
Sbjct: 248 RILSLRDEQLGEELHR-FLKRNKCLIVLDDIW 278

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV 221
           +L ++A +   G   T  A + FN+  ++  F+   WV   SVS  +   +I+  I++++
Sbjct: 181 QLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWV---SVSQTFTEEQIMRSILRNL 237

Query: 222 MPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260
              S     +G+D       ++ YL  K+Y IV+DDV+D
Sbjct: 238 GDAS-----VGDDIGTLLRKIQQYLLGKRYLIVMDDVWD 271

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255582947	935	Disease resistance protein RPM1, putativ	0.704	0.196	0.275	2e-11
357460001	942	Disease resistance protein [Medicago tru	0.685	0.190	0.281	8e-11
356524195	946	PREDICTED: disease resistance protein RP	0.436	0.120	0.341	1e-10
357459971	920	Disease resistance protein [Medicago tru	0.440	0.125	0.352	2e-10
224064832	920	cc-nbs-lrr resistance protein [Populus t	0.432	0.122	0.344	4e-10
255577491	860	leucine-rich repeat containing protein,	0.793	0.240	0.266	9e-10
297744819	597	unnamed protein product [Vitis vinifera]	0.712	0.311	0.277	2e-09
359489158	531	PREDICTED: putative disease resistance p	0.712	0.350	0.277	2e-09
359480122	934	PREDICTED: disease resistance protein RP	0.448	0.125	0.333	2e-09
359495028	1385	PREDICTED: putative disease resistance p	0.586	0.110	0.296	2e-09

>gi|255582947|ref|XP_002532244.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223528062|gb|EEF30138.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 34/218 (15%)

Query: 69  ESEEAIDAFFINIMQQQNSESTTCK-ARLVG-------LHSKIIDIRNRMEQLPPSDNDF 120
           E E+AID + +++++ Q+      K +RLV        + SKI D++  + ++    + +
Sbjct: 74  EIEDAIDVYMLHLVRHQDQHGFFHKISRLVRKLKPRHEIASKIQDLKKSVCEIRERSDRY 133

Query: 121 DIN-------ERRDKLIHLLIEGQPRV-----DESEF---ERGREELFDLLIEGPPRLSV 165
             N         RD   H      PRV     DE+E    E  + EL   L+EG     V
Sbjct: 134 KFNLSSEQGSSDRDNTWH-----DPRVHSLFIDEAELVGIESPKAELISKLVEGASENVV 188

Query: 166 VAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS 225
           ++++   G   T  A   F++  V  YFDC AW+   +V+ +Y   K+L  +I+ +   +
Sbjct: 189 ISVVGMGGLGKTTLAKKVFDSERVTVYFDCKAWI---TVTQSYKMAKLLRIMIRQLHQEN 245

Query: 226 RVSVIIGEDYQLKKSI---LRDYLTDKKYFIVLDDVFD 260
            +    G D   + S+   LR+YL +K+Y ++ DDV+D
Sbjct: 246 VLPAFEGTDTMSELSLIEKLREYLIEKRYLVIFDDVWD 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460001|ref|XP_003600282.1| Disease resistance protein [Medicago truncatula] gi|355489330|gb|AES70533.1| Disease resistance protein [Medicago truncatula]

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 48/227 (21%)

Query: 71  EEAIDAFFINIMQQQNSESTTCKARLVGL----------HSKIIDIRNRMEQLPPS---D 117
           E+ +D + +  +++Q S    C A  V L            KI +I++R+ ++  +   D
Sbjct: 78  EDVVDDYIL--LEEQQSSDPGCAAGAVDLVKTKILRLQITYKIQNIKSRIREIKETSAKD 135

Query: 118 NDFDI------------NERRDKLIHLLIEGQPRVDESE---FERGREELFDLLIEGPPR 162
           + F+I              R    +  L +    +DE++   FE  R++L DLL+EG   
Sbjct: 136 HGFNIQSSSDKPSSSSATNRNASFLQNLRDAPFYMDEADLVGFEEPRDKLIDLLVEGRAE 195

Query: 163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM 222
            +VV+I+   G   T  A   F+N  V  +FDCH W+   +VS  Y+  K+L +I+  + 
Sbjct: 196 RTVVSIVGMGGLGKTTIAKKVFDNQKVVKHFDCHVWI---TVSRPYNIEKLLREILLDIY 252

Query: 223 PPSRVSVIIGED-----YQLKKSIL----RDYLTDKKYFIVLDDVFD 260
                    GED     +Q+ +  L    R+YL  K+Y IV DDV+D
Sbjct: 253 KQQ------GEDPPQSLHQMDRKPLVDEVRNYLQGKRYVIVFDDVWD 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524195|ref|XP_003530717.1| PREDICTED: disease resistance protein RPM1-like [Glycine max]

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)

Query: 140 VDESE---FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCH 196
           +DE+E   FE  R+EL D L+EGP   +V++++   G   T  A+  FNN  V  +FD H
Sbjct: 173 LDEAEVVGFEGPRDELIDWLVEGPAERTVISVVGMGGLGKTTLASRVFNNQKVVGHFDFH 232

Query: 197 AWVKNLSVSIAYDFGKILDDIIKSVM------PPSRVSVIIGEDYQLKKSILRDYLTDKK 250
           AW+   +VS +Y    ++ D++K +       PP  +S +   D       +R+YL  K+
Sbjct: 233 AWI---TVSQSYTVEGMMRDLLKKLCKEKRENPPQDISEM---DRDSLIDEVRNYLQQKR 286

Query: 251 YFIVLDDVF 259
           Y ++LDDV+
Sbjct: 287 YVVILDDVW 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459971|ref|XP_003600267.1| Disease resistance protein [Medicago truncatula] gi|355489315|gb|AES70518.1| Disease resistance protein [Medicago truncatula]

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%)

Query: 140 VDESEFERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV 199
            D   F+  R++L DLL+EG    +VV+I+   G   T  A   F+N  V  +FDC  W+
Sbjct: 179 ADAVGFDVSRDKLIDLLVEGRAHRTVVSIVGMGGLGKTTLAKKVFDNQKVVKHFDCRLWI 238

Query: 200 KNLSVSIAYDFGKILDDII-KSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDV 258
              +VS  Y+  K+L DI+ +   PP  +  +   D +L    +R+YL  K+Y +V DDV
Sbjct: 239 ---TVSRPYNKEKLLKDILQQGKCPPQSLHQM---DGKLLVDEVRNYLQGKRYVVVFDDV 292

Query: 259 FD 260
           +D
Sbjct: 293 WD 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064832|ref|XP_002301573.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222843299|gb|EEE80846.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSV 204
            E   E+L   L+E  PR +V++I+   G   T      +NN+ +K  FDC AW+   SV
Sbjct: 169 MEESTEQLLGWLMEDEPRRTVISIVGMGGLGKTTLVTRVYNNHIIKRGFDCWAWI---SV 225

Query: 205 SIAYDFGKILDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260
           S     G++L  IIK +   + V +   +   +Y+    +L DYL  K+Y IVLDDV+ 
Sbjct: 226 SQTCGTGELLRSIIKELFGATSVVIPNNVGSMNYRQLVGMLIDYLHQKRYVIVLDDVWS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 44/251 (17%)

Query: 44  LLDSEE-NVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQ---NSESTTCKAR---- 95
           LLD+E+  V    I + L  +   +  +E+ +D F    +++Q   N  ST+ K R    
Sbjct: 49  LLDAEQKQVKNHRIQDWLGKLRDVLCAAEDVLDDFECEALRRQVAANQGSTSRKVRGFFS 108

Query: 96  -------LVGLHSKIIDIRNRMEQLPPSDNDFDINE---------RRDKLIHLLIEGQPR 139
                   + +  KI  IR R+ ++    + F++ E         R  ++ H  +  +  
Sbjct: 109 SSNPVAFRLRMGHKIKKIRERIVEIASLKSSFELTEGVHDTSVEIREREMTHSFVHAEDV 168

Query: 140 VDESEFERGREELFDLLIEGPPR---LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCH 196
           +     E  +E + + L E P     LSV+ I+   G   TA A   +N+  V+ YF+  
Sbjct: 169 IGR---EADKEIIIEHLTENPSNGESLSVIPIVGIGGLGKTALAKLVYNDERVERYFELK 225

Query: 197 AWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDY------QLKKSILRDYLTDKK 250
            W+    VS  ++  K+++ IIKS +     S   GE+Y      QL++ ++R+ +++KK
Sbjct: 226 MWI---CVSDDFNIKKLMEKIIKSAIN----STTFGENYSSLELDQLQR-VMREQISEKK 277

Query: 251 YFIVLDDVFDD 261
           YF+VLDDV++D
Sbjct: 278 YFLVLDDVWND 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744819|emb|CBI38087.3| unnamed protein product [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 48/234 (20%)

Query: 54  PDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTC----KARLV-GLHSKIIDIRN 108
           P I   +  I     ++E+ ID F   +  QQ   S  C    K RLV  L S+I +I  
Sbjct: 56  PRIKLWVSQIRDVTYDAEDVIDRFMFEMNHQQQG-SLKCLKFLKLRLVHKLESRIREINT 114

Query: 109 RMEQLPPSDNDFDI---------------NERRDKLIHLLIEGQPRVDESEFERGREELF 153
           ++E++  + + F +                ERR  ++         V+    +   + + 
Sbjct: 115 KIEKIKAAKSTFVVETLPAASSPNEVVPHRERRAPIVE-------EVNVVGIQEDAKSVK 167

Query: 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAW--------VKNLSVS 205
             L+ G  R +VV+I+   G   T  A   +N+N V+  FDCHAW        ++ L + 
Sbjct: 168 QKLLNGEMRRAVVSIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLG 227

Query: 206 IAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF 259
           IA   G IL +  +S M  S +            + LRDYLT KKY IV+DD++
Sbjct: 228 IAVRVG-ILSEEERSKMNESDLG-----------NSLRDYLTTKKYLIVMDDMW 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489158|ref|XP_003633890.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 48/234 (20%)

Query: 54  PDISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTC----KARLV-GLHSKIIDIRN 108
           P I   +  I     ++E+ ID F   +  QQ   S  C    K RLV  L S+I +I  
Sbjct: 56  PRIKLWVSQIRDVTYDAEDVIDRFMFEMNHQQQG-SLKCLKFLKLRLVHKLESRIREINT 114

Query: 109 RMEQLPPSDNDFDI---------------NERRDKLIHLLIEGQPRVDESEFERGREELF 153
           ++E++  + + F +                ERR  ++         V+    +   + + 
Sbjct: 115 KIEKIKAAKSTFVVETLPAASSPNEVVPHRERRAPIVE-------EVNVVGIQEDAKSVK 167

Query: 154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAW--------VKNLSVS 205
             L+ G  R +VV+I+   G   T  A   +N+N V+  FDCHAW        ++ L + 
Sbjct: 168 QKLLNGEMRRAVVSIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLG 227

Query: 206 IAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF 259
           IA   G IL +  +S M  S +            + LRDYLT KKY IV+DD++
Sbjct: 228 IAVRVG-ILSEEERSKMNESDLG-----------NSLRDYLTTKKYLIVMDDMW 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 9/126 (7%)

Query: 140 VDESEF---ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCH 196
           +DE+E    E  R EL   L+EG P+ +V++++   G   T FA   ++N  V  +FDC+
Sbjct: 165 MDETEIVGIEPLRNELISRLVEGNPKRTVISVVGMGGLGKTTFAKKVYDNQRVVGHFDCN 224

Query: 197 AWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKS---ILRDYLTDKKYFI 253
           AWV   +VS ++   ++L ++ K      + +V  G D   + S   ++R YL DK+Y +
Sbjct: 225 AWV---TVSQSFKMEELLRNMTKKFYQGRKEAVPEGIDTIDEMSLIALIRQYLQDKRYVV 281

Query: 254 VLDDVF 259
           V DDV+
Sbjct: 282 VFDDVW 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495028|ref|XP_002268016.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 26/179 (14%)

Query: 98  GLHSKIIDIRNRMEQLPPSDNDFDINE-----------RRDKLIHLLIEGQPRVDESEFE 146
            + SKI +I  R++++    ND D+ E           +R++   L++E     D    E
Sbjct: 125 SMRSKIKEITERLQEISAQKNDLDLREIAGGWWSDRKRKREQTTSLVVES----DVYGRE 180

Query: 147 RGREELFDLLIEGPP----RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNL 202
           + + ++ D+L++  P     +SV+ I+   G   T  A  AFN++ VK  FD  AWV   
Sbjct: 181 KNKADIVDMLLKHDPSSDDEVSVIPIVGMGGIGKTTLAQLAFNDDEVKGRFDLRAWV--- 237

Query: 203 SVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD 261
            VS  +D  +I   I++SV P SR       D  L +  L++  ++KK+ +VLDDV+++
Sbjct: 238 CVSDDFDVLRITKTILQSVDPDSRDV----NDLNLLQVKLKEKFSEKKFLLVLDDVWNE 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.773	0.238	0.259	6e-05

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 57/220 (25%), Positives = 94/220 (42%)

Query:    55 DISEILEDI--NYFVQESEEAIDAFFINIMQQ--QNSESTTCKARLVGLHSKIIDIRNRM 110
             DI+  +ED+   YF++  E ++    + +  +  +  ++      +  L  +I+DI  + 
Sbjct:    67 DIAYDIEDVLDTYFLKLEERSLRRGLLRLTNKIGKKRDAYNIVEDIRTLKRRILDITRKR 126

Query:   111 EQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREE-----LFDLLIEGPPRLSV 165
             E       +    E    +    +   P VD+ E   G E+     L  LL +     S 
Sbjct:   127 ETFGIGSFNEPRGENITNVRVRQLRRAPPVDQEELVVGLEDDVKILLVKLLSDNEKDKSY 186

Query:   166 VAILDGIG-FDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS--VM 222
             +  + G+G    TA A   +N+  VK  FDC AW     VS  Y    IL  II+S  ++
Sbjct:   187 IISIFGMGGLGKTALARKLYNSGDVKRRFDCRAWTY---VSQEYKTRDILIRIIRSLGIV 243

Query:   223 PPSRVSVI--IGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260
                 +  I    ED +L+   L   L  K Y +V+DDV+D
Sbjct:   244 SAEEMEKIKMFEEDEELEV-YLYGLLEGKNYMVVVDDVWD 282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.141   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.42u 0.08s 24.50t   Elapsed:  00:00:01
  Total cpu time:  24.42u 0.08s 24.50t   Elapsed:  00:00:01
  Start:  Fri May 10 17:29:26 2013   End:  Fri May 10 17:29:27 2013

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_II001977	cc-nbs-lrr resistance protein (920 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017034001	hypothetical protein (707 aa)						•			0.800
	fgenesh4_pm.C_LG_XV000408	SubName- Full=Putative uncharacterized protein; (204 aa)						•			0.800
	fgenesh4_pm.C_LG_IV000317	SubName- Full=Putative uncharacterized protein; (354 aa)						•			0.800
	eugene3.01370014	hypothetical protein (699 aa)						•			0.800
	eugene3.00440247	hypothetical protein (704 aa)						•			0.800
	eugene3.00081050	hypothetical protein (791 aa)						•			0.800
	eugene3.00040817	hypothetical protein (704 aa)						•			0.800
	eugene3.00013054	hypothetical protein (699 aa)						•			0.800
	estExt_fgenesh4_pg.C_LG_V1547	SubName- Full=Putative uncharacterized protein; (823 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_II0574	hypothetical protein (265 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-08

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 150 EELFDLLIEGPPRLSVVAI--LDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA 207
           E L + L+E    L VV I  + G+G   T  A   +N++ V  +FD  AWV    VS  
Sbjct: 6   EALIEKLLEMSDNLGVVGIVGMGGVG--KTTLAKQIYNDDSVGGHFDSVAWV---VVSKT 60

Query: 208 YDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFDD 261
           Y   ++  DI++ +       V   ++       +++ L  K++ +VLDDV++ 
Sbjct: 61  YTEFRLQKDILQELGLDDSDWV--EKNESELAVKIKEALLRKRFLLVLDDVWEK 112

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.96
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.58
cd01128	249	rho_factor Transcription termination factor rho is	98.9
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.85
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.8
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.8
PRK09376	416	rho transcription termination factor Rho; Provisio	98.8
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.74
TIGR00767	415	rho transcription termination factor Rho. Members	98.6
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.33
PTZ00202	550	tuzin; Provisional	98.29
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.29
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.27
PF05729	166	NACHT: NACHT domain	98.23
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.1
PRK08118	167	topology modulation protein; Reviewed	98.08
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.05
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.03
smart00382	148	AAA ATPases associated with a variety of cellular	97.99
PTZ00112	1164	origin recognition complex 1 protein; Provisional	97.98
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.96
PRK04841	903	transcriptional regulator MalT; Provisional	97.94
PF13173	128	AAA_14: AAA domain	97.8
PRK13342	413	recombination factor protein RarA; Reviewed	97.73
PRK12608	380	transcription termination factor Rho; Provisional	97.72
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.71
PRK06893	229	DNA replication initiation factor; Validated	97.69
KOG2028	554	consensus ATPase related to the helicase subunit o	97.67
PF00004	132	AAA: ATPase family associated with various cellula	97.67
PHA00729	226	NTP-binding motif containing protein	97.65
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.63
PRK08116	268	hypothetical protein; Validated	97.63
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.62
PRK07952	244	DNA replication protein DnaC; Validated	97.62
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.61
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.59
PRK12377	248	putative replication protein; Provisional	97.54
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.53
PRK06696	223	uridine kinase; Validated	97.52
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.52
PRK05541	176	adenylylsulfate kinase; Provisional	97.52
PRK07261	171	topology modulation protein; Provisional	97.52
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.46
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.42
PRK07667	193	uridine kinase; Provisional	97.4
PRK08181	269	transposase; Validated	97.36
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.35
PRK08727	233	hypothetical protein; Validated	97.34
PRK04195	482	replication factor C large subunit; Provisional	97.33
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.3
PRK13341	725	recombination factor protein RarA/unknown domain f	97.28
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.25
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.22
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.22
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.21
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.21
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.2
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.19
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.19
PTZ00301	210	uridine kinase; Provisional	97.19
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.18
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.18
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.18
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.17
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.17
PRK06526	254	transposase; Provisional	97.17
PRK09354	349	recA recombinase A; Provisional	97.15
PRK05480	209	uridine/cytidine kinase; Provisional	97.15
PRK09183	259	transposase/IS protein; Provisional	97.13
PRK06835	329	DNA replication protein DnaC; Validated	97.13
PRK08084	235	DNA replication initiation factor; Provisional	97.13
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.12
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.11
PRK12422	445	chromosomal replication initiation protein; Provis	97.11
PRK08233	182	hypothetical protein; Provisional	97.09
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.09
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.08
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.08
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.08
PRK12402	337	replication factor C small subunit 2; Reviewed	97.07
TIGR00959	428	ffh signal recognition particle protein. This mode	97.05
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.05
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.04
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.04
PRK06921	266	hypothetical protein; Provisional	97.04
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.04
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.03
CHL00095	821	clpC Clp protease ATP binding subunit	97.02
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.0
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.99
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.99
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.98
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.98
PRK08939	306	primosomal protein DnaI; Reviewed	96.98
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.98
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.97
PRK06547	172	hypothetical protein; Provisional	96.96
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.96
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.96
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.94
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.94
PRK10867	433	signal recognition particle protein; Provisional	96.93
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.93
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.92
PRK05642	234	DNA replication initiation factor; Validated	96.91
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.91
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.9
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.9
PLN03025	319	replication factor C subunit; Provisional	96.9
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.89
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.89
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.86
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.86
PRK06762	166	hypothetical protein; Provisional	96.86
PHA02544	316	44 clamp loader, small subunit; Provisional	96.85
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.84
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.84
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.81
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.81
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.79
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.79
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.78
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.77
PRK14738	206	gmk guanylate kinase; Provisional	96.76
PRK08149	428	ATP synthase SpaL; Validated	96.76
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.76
PRK03839	180	putative kinase; Provisional	96.75
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.75
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.74
PTZ00035	337	Rad51 protein; Provisional	96.73
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.73
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.73
PRK05439	311	pantothenate kinase; Provisional	96.72
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.71
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.71
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.7
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	96.69
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.68
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.68
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.68
PRK04040	188	adenylate kinase; Provisional	96.68
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.67
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	96.65
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.64
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.63
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.62
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.62
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.61
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.61
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.61
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.6
PRK10865	857	protein disaggregation chaperone; Provisional	96.59
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	96.59
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.58
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.58
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.58
PTZ00088	229	adenylate kinase 1; Provisional	96.57
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.56
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.56
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.56
CHL00181	287	cbbX CbbX; Provisional	96.54
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.54
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.54
PLN02318	656	phosphoribulokinase/uridine kinase	96.53
PRK00131	175	aroK shikimate kinase; Reviewed	96.53
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.53
PRK00625	173	shikimate kinase; Provisional	96.53
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.53
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.53
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.52
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.52
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.51
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.49
PRK00300	205	gmk guanylate kinase; Provisional	96.49
PRK09087	226	hypothetical protein; Validated	96.48
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.48
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	96.46
PRK06067	234	flagellar accessory protein FlaH; Validated	96.46
CHL00176	638	ftsH cell division protein; Validated	96.46
PRK00889	175	adenylylsulfate kinase; Provisional	96.45
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.44
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.44
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.43
PRK15455	644	PrkA family serine protein kinase; Provisional	96.42
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	96.42
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.42
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.42
PRK12678	672	transcription termination factor Rho; Provisional	96.41
PRK06217	183	hypothetical protein; Validated	96.41
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	96.4
PRK09519	790	recA DNA recombination protein RecA; Reviewed	96.39
PF07726	131	AAA_3: ATPase family associated with various cellu	96.39
PRK14974	336	cell division protein FtsY; Provisional	96.38
PRK13947	171	shikimate kinase; Provisional	96.38
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.36
PRK03846	198	adenylylsulfate kinase; Provisional	96.36
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.35
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.35
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.34
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.34
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.34
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.33
PRK13949	169	shikimate kinase; Provisional	96.32
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.32
PRK14737	186	gmk guanylate kinase; Provisional	96.31
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.31
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.3
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.3
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.29
PRK04296	190	thymidine kinase; Provisional	96.29
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.28
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.28
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.27
PRK13975	196	thymidylate kinase; Provisional	96.26
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.26
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.26
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.26
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.25
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.25
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.25
PRK04328	249	hypothetical protein; Provisional	96.25
PRK14530	215	adenylate kinase; Provisional	96.25
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	96.24
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.24
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.23
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.23
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.23
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.23
PRK11823	446	DNA repair protein RadA; Provisional	96.23
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.23
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.21
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.21
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.2
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.2
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	96.2
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	96.2
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.19
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	96.17
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.17
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.15
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.15
PRK09099	441	type III secretion system ATPase; Provisional	96.14
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.14
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.14
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	96.14
PRK05922	434	type III secretion system ATPase; Validated	96.13
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.12
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	96.12
PRK07594	433	type III secretion system ATPase SsaN; Validated	96.11
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.11
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	96.11
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.11
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.1
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.1
PRK06936	439	type III secretion system ATPase; Provisional	96.1
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	96.09
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.09
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.07
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.07
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.06
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.03
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.03
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	96.03
PRK05057	172	aroK shikimate kinase I; Reviewed	96.02
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.02
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	96.01
PTZ00185	574	ATPase alpha subunit; Provisional	96.0
PRK08356	195	hypothetical protein; Provisional	96.0
PRK14527	191	adenylate kinase; Provisional	96.0
COG0593	408	DnaA ATPase involved in DNA replication initiation	96.0
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.99
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.99
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.98
COG3903	414	Predicted ATPase [General function prediction only	95.98
PRK09825	176	idnK D-gluconate kinase; Provisional	95.98
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	95.98
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.97
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.97
COG1100	219	GTPase SAR1 and related small G proteins [General	95.96
PLN02348	395	phosphoribulokinase	95.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.96
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	95.96
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.96
PRK04182	180	cytidylate kinase; Provisional	95.95
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	95.95
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.94
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	95.94
PLN02796	347	D-glycerate 3-kinase	95.93
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.93
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.92
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.92
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	95.92
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.91
PRK10416	318	signal recognition particle-docking protein FtsY;	95.91
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.91
PLN02200	234	adenylate kinase family protein	95.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.9
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	95.9
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	95.89
PRK13948	182	shikimate kinase; Provisional	95.89
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.89
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.87
PRK06761	282	hypothetical protein; Provisional	95.87
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.86
PRK06620	214	hypothetical protein; Validated	95.85
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.83
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	95.83
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.83
cd03116	159	MobB Molybdenum is an essential trace element in t	95.83
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.82
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.82
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.81
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.81
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.81
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.81
PRK13695	174	putative NTPase; Provisional	95.81
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.81
PRK01184	184	hypothetical protein; Provisional	95.8
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.79
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.78
PRK13946	184	shikimate kinase; Provisional	95.78
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.78
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	95.77
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.77
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	95.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.76
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.75
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.74
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.74
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.74
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.73
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.72
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.72
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.71
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.71
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.7
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.7
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	95.7
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	95.69
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	95.69
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.69
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.69
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.67
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.66
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.66
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.66
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.66
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.65
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.65
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	95.65
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	95.64
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.64
PRK14532	188	adenylate kinase; Provisional	95.64
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	95.64
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	95.64
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.63
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.62
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.62
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.62
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.62
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.62
PRK03731	171	aroL shikimate kinase II; Reviewed	95.61
PRK00698	205	tmk thymidylate kinase; Validated	95.61
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	95.61
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.61
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	95.6
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	95.6
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.6
TIGR01287	275	nifH nitrogenase iron protein. This model describe	95.59
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	95.58
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	95.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.57
PRK10865	857	protein disaggregation chaperone; Provisional	95.57
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.57
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	95.57
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	95.57
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.57
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.57
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	95.56
PRK07940	394	DNA polymerase III subunit delta'; Validated	95.56
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.56
PRK10536	262	hypothetical protein; Provisional	95.56
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.56
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.55
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.55
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.55
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.54
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.54
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	95.54
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.53
PRK08533	230	flagellar accessory protein FlaH; Reviewed	95.53
CHL00195	489	ycf46 Ycf46; Provisional	95.52
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.52
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.52
PRK15453	290	phosphoribulokinase; Provisional	95.51
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	95.51
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.51
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.51
PRK10908	222	cell division protein FtsE; Provisional	95.51
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.49
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.49
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.48
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.48
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.48
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.48
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.48
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.48
PRK14531	183	adenylate kinase; Provisional	95.47
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.47
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.47
COG1123	539	ATPase components of various ABC-type transport sy	95.47
PRK02496	184	adk adenylate kinase; Provisional	95.46
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	95.46
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.46
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.46
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.45
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	95.45
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.44
cd03246	173	ABCC_Protease_Secretion This family represents the	95.44
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.43
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.42
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.42
PRK13768	253	GTPase; Provisional	95.42
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.42
PHA02530	300	pseT polynucleotide kinase; Provisional	95.42
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.41
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.41
PF13245	76	AAA_19: Part of AAA domain	95.41
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.41
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.4
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.4
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	95.39
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.39
PLN03046	460	D-glycerate 3-kinase; Provisional	95.38
PLN02165	334	adenylate isopentenyltransferase	95.38
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	95.38
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.38
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	95.38
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.38
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	95.38
cd03114	148	ArgK-like The function of this protein family is u	95.37
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	95.37
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.36
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.36
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.36
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.35
PRK13230	279	nitrogenase reductase-like protein; Reviewed	95.35
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.34
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	95.34
PRK06820	440	type III secretion system ATPase; Validated	95.33
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.33
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.33
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.33
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.32
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.32
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.32
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.32
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.31
COG4240	300	Predicted kinase [General function prediction only	95.31
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.31
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.31
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.3
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.3
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	95.3
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	95.3
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	95.3
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.3
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.3
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	95.29
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.29
PRK07429	327	phosphoribulokinase; Provisional	95.28
PRK13232	273	nifH nitrogenase reductase; Reviewed	95.28
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.28
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.28
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.27
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.27
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.26
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.26
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.26
cd02117	212	NifH_like This family contains the NifH (iron prot	95.25
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.25
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	95.25
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	95.25
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.24
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.24
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.24
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.24
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.23
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.23
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.23
cd02040	270	NifH NifH gene encodes component II (iron protein)	95.23
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.23
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.23
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.23

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.96  E-value=2e-28  Score=235.98  Aligned_cols=230  Identities=20%  Similarity=0.215  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHHHhhchhhhh--cchhh-hcCCccHHHHHHHHHHHHhhhHhHHHHHHHHHHhccCCC-----------
Q 046049           23 HLIQLFREHFDKAKISLPFWQL--LDSEE-NVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQNSE-----------   88 (261)
Q Consensus        23 ~~~~~~~~~~~~L~~~l~~i~~--~d~~~-~~~~~~~~~Wl~~lr~~a~d~eD~id~~~~~~~~~~~~~-----------   88 (261)
                      +...+..+.+.+|++.+..++.  -|+.. +.....+.+|.+.+++++|++||+++.|.......+..+           
T Consensus        21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~  100 (889)
T KOG4658|consen   21 ECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR  100 (889)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence            3445556678888988888882  33333 356778999999999999999999999988877653221           


Q ss_pred             ccccccccccHHHHHHHHHHHHhccCCCCCCccccc-----CcccccccccCCCCCCCch-h-hhHhHHHHHHHHhcCCC
Q 046049           89 STTCKARLVGLHSKIIDIRNRMEQLPPSDNDFDINE-----RRDKLIHLLIEGQPRVDES-E-FERGREELFDLLIEGPP  161 (261)
Q Consensus        89 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~L~~~~~  161 (261)
                      -|++.+++ +.+..+..+..++..+.+....++...     .........++..+...+. . .+..++++.+.|..++.
T Consensus       101 ~c~~~~~~-~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~  179 (889)
T KOG4658|consen  101 LCLCGFCS-KNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDV  179 (889)
T ss_pred             HhhhhhHh-HhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCC
Confidence            12223444 555555555555544444444443322     0001122233344444332 3 99999999999998764


Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCC-cccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNH-VKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK  239 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~  239 (261)
                        .++||+||||+||||||+.+||+.. ++.+|+..+||   +||++|+..+|+++|+..++.....   ... +.++++
T Consensus       180 --~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV---~VSk~f~~~~iq~~Il~~l~~~~~~---~~~~~~~~~~  251 (889)
T KOG4658|consen  180 --GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV---VVSKEFTTRKIQQTILERLGLLDEE---WEDKEEDELA  251 (889)
T ss_pred             --CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE---EEcccccHHhHHHHHHHHhccCCcc---cchhhHHHHH
Confidence              9999999999999999999999987 99999999999   9999999999999999999875441   122 457999


Q ss_pred             HHHHHhccCCeEEEEeecCCCC
Q 046049          240 SILRDYLTDKKYFIVLDDVFDD  261 (261)
Q Consensus       240 ~~l~~~L~~kr~LlVlDDVW~~  261 (261)
                      ..|.++|++|||||||||||++
T Consensus       252 ~~i~~~L~~krfllvLDDIW~~  273 (889)
T KOG4658|consen  252 SKLLNLLEGKRFLLVLDDIWEE  273 (889)
T ss_pred             HHHHHHhccCceEEEEeccccc
Confidence            9999999999999999999985

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.84  E-value=1e-20  Score=162.79  Aligned_cols=112  Identities=30%  Similarity=0.437  Sum_probs=96.4

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPP  224 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~  224 (261)
                      |+.++++|.++|.....+.++|+|+||||+||||||+.++++..++.+|+.++|+   .+++.++...++..|+.+++..
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv---~~~~~~~~~~~~~~i~~~l~~~   77 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWV---SLSKNPSLEQLLEQILRQLGEP   77 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEE---EEES-SCCHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccc---cccccccccccccccccccccc
Confidence            6889999999999866789999999999999999999999976688999999999   9999999999999999999987


Q ss_pred             CCCccccCCCHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049          225 SRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD  260 (261)
Q Consensus       225 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW~  260 (261)
                      .... ....+.+.+...+.+.|.++++||||||||+
T Consensus        78 ~~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~  112 (287)
T PF00931_consen   78 DSSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWD  112 (287)
T ss_dssp             -STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S
T ss_pred             cccc-ccccccccccccchhhhccccceeeeeeecc
Confidence            5411 0022788899999999999999999999997

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.58  E-value=1.5e-14  Score=145.65  Aligned_cols=106  Identities=18%  Similarity=0.290  Sum_probs=77.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-----------CC-HHH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-----------YD-FGK  212 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-----------~~-~~~  212 (261)
                      ++..+++|..+|..+..+.++|+||||||+||||||+.+|+  .+..+|+..+|+....++..           ++ ...
T Consensus       189 ~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~  266 (1153)
T PLN03210        189 IEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLH  266 (1153)
T ss_pred             hHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHH
Confidence            88889999998876666799999999999999999999999  77889998888732212211           11 123


Q ss_pred             HHHHHHHHhCCCCCCccccCC-CHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049          213 ILDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTDKKYFIVLDDVFD  260 (261)
Q Consensus       213 il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDDVW~  260 (261)
                      ++..++.++.....    ... ..    ..+++.|++||+||||||||+
T Consensus       267 l~~~~l~~il~~~~----~~~~~~----~~~~~~L~~krvLLVLDdv~~  307 (1153)
T PLN03210        267 LQRAFLSEILDKKD----IKIYHL----GAMEERLKHRKVLIFIDDLDD  307 (1153)
T ss_pred             HHHHHHHHHhCCCC----cccCCH----HHHHHHHhCCeEEEEEeCCCC
Confidence            55566666544322    011 21    457888999999999999996

syringae 6; Provisional

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.90  E-value=3.4e-09  Score=89.21  Aligned_cols=92  Identities=10%  Similarity=-0.057  Sum_probs=61.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC--CCHHHHHHHHHHHhCCCCCCccccCC--CHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA--YDFGKILDDIIKSVMPPSRVSVIIGE--DYQLK  238 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~--~~~~~il~~i~~~l~~~~~~~~~~~~--~~~~l  238 (261)
                      -..++|+|++|+|||||++.+|++.... +|++.+|+   ++++.  ++..++++.|...+-....+......  -....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v---~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~   91 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIV---LLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV   91 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEE---EEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence            4688999999999999999999975544 89999999   87776  89999999983333222221000000  11112


Q ss_pred             HHHHHHh-ccCCeEEEEeecC
Q 046049          239 KSILRDY-LTDKKYFIVLDDV  258 (261)
Q Consensus       239 ~~~l~~~-L~~kr~LlVlDDV  258 (261)
                      ......+ -.+++.++++|++
T Consensus        92 ~~~a~~~~~~G~~vll~iDei  112 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSI  112 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECH
Confidence            2222222 2489999999986

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.85  E-value=5.7e-08  Score=82.75  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=57.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSIL  242 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l  242 (261)
                      .+++.|+|++|+|||||++.+++.... ..+ ..+|+    +....+..+++..|+..++....     +.+...+...+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~----~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l  111 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL----VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLREL  111 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee----eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHH
Confidence            468899999999999999999985331 111 12233    23345778899999998876543     11222333333


Q ss_pred             H----Hh-ccCCeEEEEeecCCC
Q 046049          243 R----DY-LTDKKYFIVLDDVFD  260 (261)
Q Consensus       243 ~----~~-L~~kr~LlVlDDVW~  260 (261)
                      .    .. ..+++++||+||+|.
T Consensus       112 ~~~l~~~~~~~~~~vliiDe~~~  134 (269)
T TIGR03015       112 EDFLIEQFAAGKRALLVVDEAQN  134 (269)
T ss_pred             HHHHHHHHhCCCCeEEEEECccc
Confidence            3    32 267889999999985

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.80  E-value=9.7e-09  Score=77.68  Aligned_cols=86  Identities=14%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccc-----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQ  236 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~  236 (261)
                      -+.+.|+|.+|+|||++++.+.++  ....     -...+|+   ..+...+...+...|+.+++....     .. +..
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~   73 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYV---NCPSSRTPRDFAQEILEALGLPLK-----SRQTSD   73 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEE---EHHHHSSHHHHHHHHHHHHT-SSS-----STS-HH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEE---EeCCCCCHHHHHHHHHHHhCcccc-----ccCCHH
Confidence            578999999999999999999873  2221     2345688   887777999999999999998776     33 677


Q ss_pred             HHHHHHHHhccCC-eEEEEeecC
Q 046049          237 LKKSILRDYLTDK-KYFIVLDDV  258 (261)
Q Consensus       237 ~l~~~l~~~L~~k-r~LlVlDDV  258 (261)
                      ++...+.+.+... ..+||+|++
T Consensus        74 ~l~~~~~~~l~~~~~~~lviDe~   96 (131)
T PF13401_consen   74 ELRSLLIDALDRRRVVLLVIDEA   96 (131)
T ss_dssp             HHHHHHHHHHHHCTEEEEEEETT
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCh
Confidence            7888888888654 459999985

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.80  E-value=4.4e-08  Score=88.15  Aligned_cols=110  Identities=18%  Similarity=0.135  Sum_probs=77.2

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      |+++.++|...|...  ......+.|+|++|+|||++++.++++.......-..+++   ......+...++..|+.++.
T Consensus        35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i---n~~~~~~~~~~~~~i~~~l~  111 (394)
T PRK00411         35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI---NCQIDRTRYAIFSEIARQLF  111 (394)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE---ECCcCCCHHHHHHHHHHHhc
Confidence            899999999888432  2234456799999999999999999843212112234555   55666678899999999997


Q ss_pred             CCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCCC
Q 046049          223 PPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVFD  260 (261)
Q Consensus       223 ~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW~  260 (261)
                      .....   ... +.+++...+.+.+.  ++..+||||+++.
T Consensus       112 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~  149 (394)
T PRK00411        112 GHPPP---SSGLSFDELFDKIAEYLDERDRVLIVALDDINY  149 (394)
T ss_pred             CCCCC---CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence            63221   022 66777778888775  4568999999863

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.80  E-value=5.4e-09  Score=92.21  Aligned_cols=91  Identities=11%  Similarity=-0.034  Sum_probs=60.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC--CHHHHHHHHHHHhCCCCCCccccCC--CHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY--DFGKILDDIIKSVMPPSRVSVIIGE--DYQLK  238 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~--~~~~il~~i~~~l~~~~~~~~~~~~--~~~~l  238 (261)
                      -.-.+|+|++|+|||||++.||++.... ||++++||   .+++.+  ...++++.|...+-....+. ....  -....
T Consensus       169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~V---vLIgER~~EVtdiqrsIlg~vv~st~d~-~~~~~~~~a~~  243 (416)
T PRK09376        169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIV---LLIDERPEEVTDMQRSVKGEVVASTFDE-PAERHVQVAEM  243 (416)
T ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEE---EEeCCchhHHHHHHHHhcCcEEEECCCC-CHHHHHHHHHH
Confidence            4577899999999999999999965444 89999999   999887  77888888863222222110 0000  00011


Q ss_pred             HHHHHHh--ccCCeEEEEeecC
Q 046049          239 KSILRDY--LTDKKYFIVLDDV  258 (261)
Q Consensus       239 ~~~l~~~--L~~kr~LlVlDDV  258 (261)
                      .-...++  -.|++.||++|++
T Consensus       244 ~ie~Ae~~~e~G~dVlL~iDsI  265 (416)
T PRK09376        244 VIEKAKRLVEHGKDVVILLDSI  265 (416)
T ss_pred             HHHHHHHHHHcCCCEEEEEECh
Confidence            1112222  2679999999986

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.74  E-value=1.1e-07  Score=84.74  Aligned_cols=106  Identities=19%  Similarity=0.096  Sum_probs=74.2

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc------ceeeEEecccccCCCCHHHHHHH
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF------DCHAWVKNLSVSIAYDFGKILDD  216 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~vs~~~~~~~il~~  216 (261)
                      |+.++++|...|...  ......+.|+|++|+|||++++.+++.  .....      -..+|+   ......+...++..
T Consensus        20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~i---n~~~~~~~~~~~~~   94 (365)
T TIGR02928        20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYV---NCQILDTLYQVLVE   94 (365)
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEE---ECCCCCCHHHHHHH
Confidence            999999999998641  233457899999999999999999873  22111      133566   66666677889999


Q ss_pred             HHHHhCC---CCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049          217 IIKSVMP---PSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF  259 (261)
Q Consensus       217 i~~~l~~---~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW  259 (261)
                      |+.++..   ...    ... +..++...+.+.+.  +++++||||++.
T Consensus        95 i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d  139 (365)
T TIGR02928        95 LANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEID  139 (365)
T ss_pred             HHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence            9999842   211    012 45556666666663  568999999985

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00767 rho transcription termination factor Rho

Probab=98.60  E-value=1.1e-07  Score=84.45  Aligned_cols=91  Identities=9%  Similarity=-0.057  Sum_probs=61.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC--CCHHHHHHHHHHHhCCCCCCccccCCCHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA--YDFGKILDDIIKSVMPPSRVSVIIGEDYQLKK  239 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~--~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~  239 (261)
                      .-..++|+|++|+|||||++.+++.... +||+..+||   .+++.  .++.++++.|+..+-....+..  ......+.
T Consensus       167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~V---lLIgER~~EVtDLqrsIlg~Vvast~d~p--~~~~~~va  240 (415)
T TIGR00767       167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIV---LLIDERPEEVTDMQRSVKGEVVASTFDEP--ASRHVQVA  240 (415)
T ss_pred             CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEE---EEcCCCCccHHHHHHHhhceEEEecCCCC--hHHHHHHH
Confidence            3467999999999999999999995433 379999999   88865  7899999998654443332100  00111111


Q ss_pred             H----HHHHh-ccCCeEEEEeecC
Q 046049          240 S----ILRDY-LTDKKYFIVLDDV  258 (261)
Q Consensus       240 ~----~l~~~-L~~kr~LlVlDDV  258 (261)
                      .    ....+ -.|++.+|++|.+
T Consensus       241 ~~v~e~Ae~~~~~GkdVVLlIDEi  264 (415)
T TIGR00767       241 EMVIEKAKRLVEHKKDVVILLDSI  264 (415)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEECh
Confidence            1    11111 2589999999986

Members of this family differ in the specificity of RNA binding.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.33  E-value=1.4e-06  Score=69.60  Aligned_cols=42  Identities=19%  Similarity=0.106  Sum_probs=29.1

Q ss_pred             hhHhHHHHHHHHh-cCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLI-EGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~-~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+++.+.+...|. ......+.+.|+|++|+|||+|.+.++..
T Consensus         5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen    5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999884 22345799999999999999999998883

>PTZ00202 tuzin; Provisional

Probab=98.29  E-value=2.1e-05  Score=70.57  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=65.1

Q ss_pred             hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049          145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP  223 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~  223 (261)
                      |+.+...|...|.+.+ ....++.|.|++|+|||||++.+....  .  |  .+++   .  ...+..+++..|+.+++.
T Consensus       267 ReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~--~--~qL~---v--Nprg~eElLr~LL~ALGV  335 (550)
T PTZ00202        267 REAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M--PAVF---V--DVRGTEDTLRSVVKALGV  335 (550)
T ss_pred             cHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C--c--eEEE---E--CCCCHHHHHHHHHHHcCC
Confidence            9999999998886533 334699999999999999999998732  2  1  1333   2  222679999999999997


Q ss_pred             CCCCccccCCCHHHHHHHHHHhc-----c-CCeEEEEe
Q 046049          224 PSRVSVIIGEDYQLKKSILRDYL-----T-DKKYFIVL  255 (261)
Q Consensus       224 ~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVl  255 (261)
                      +..      ....++...|.+.|     . +++-+||+
T Consensus       336 ~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII  367 (550)
T PTZ00202        336 PNV------EACGDLLDFISEACRRAKKMNGETPLLVL  367 (550)
T ss_pred             CCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            432      13344555555544     2 67777776

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.29  E-value=6.1e-06  Score=62.62  Aligned_cols=40  Identities=20%  Similarity=0.066  Sum_probs=30.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++.....+...+...  ....+.|+|++|+||||+++.+++.
T Consensus         3 ~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009           3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             hHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            445666777766543  3567889999999999999999984

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=8.5e-06  Score=72.48  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=76.5

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccce--eeEEecccccCCCCHHHHHHHHHHH
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC--HAWVKNLSVSIAYDFGKILDDIIKS  220 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~vs~~~~~~~il~~i~~~  220 (261)
                      |+++.+.+...|..-  .....-+-|+|.+|+|||+.++.|.+  +++.....  .+.|   ..-...++..++..|+.+
T Consensus        22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yI---Nc~~~~t~~~i~~~i~~~   96 (366)
T COG1474          22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYI---NCLELRTPYQVLSKILNK   96 (366)
T ss_pred             cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEE---eeeeCCCHHHHHHHHHHH
Confidence            889999988877532  11122388999999999999999988  44443221  5666   666778899999999999


Q ss_pred             hCCCCCCccccCCCHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049          221 VMPPSRVSVIIGEDYQLKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       221 l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                      ++....    .+....+....+.+.+.  ++.++||||++
T Consensus        97 ~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi  132 (366)
T COG1474          97 LGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEV  132 (366)
T ss_pred             cCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence            973332    12266667777777774  58899999986

>PF05729 NACHT: NACHT domain

Probab=98.23  E-value=3.4e-06  Score=65.98  Aligned_cols=82  Identities=15%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHH---HHHHHHHHHhCCCCCCccccCCCHH
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFG---KILDDIIKSVMPPSRVSVIIGEDYQ  236 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~---~il~~i~~~l~~~~~~~~~~~~~~~  236 (261)
                      +++.|+|.+|+||||+++.+...-.-...    |...+|+   +.+......   .+...|..+......       ...
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~   70 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF---SLRDISDSNNSRSLADLLFDQLPESIA-------PIE   70 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE---eehhhhhccccchHHHHHHHhhccchh-------hhH
Confidence            47899999999999999998763222221    4556666   554332222   333344334332211       112


Q ss_pred             HHHHHHHHhc-cCCeEEEEeecC
Q 046049          237 LKKSILRDYL-TDKKYFIVLDDV  258 (261)
Q Consensus       237 ~l~~~l~~~L-~~kr~LlVlDDV  258 (261)
                      .   .+...+ ..++++||||++
T Consensus        71 ~---~~~~~~~~~~~~llilDgl   90 (166)
T PF05729_consen   71 E---LLQELLEKNKRVLLILDGL   90 (166)
T ss_pred             H---HHHHHHHcCCceEEEEech
Confidence            1   222222 578999999985

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.10  E-value=6.2e-06  Score=74.47  Aligned_cols=64  Identities=13%  Similarity=0.003  Sum_probs=50.4

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILD  215 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~  215 (261)
                      .+...+.++..|...    +.|.++|++|+|||++|+.+.+......+|+...||   ++++.++..+++.
T Consensus       180 ~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V---tFHpsySYeDFI~  243 (459)
T PRK11331        180 PETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV---QFHQSYSYEDFIQ  243 (459)
T ss_pred             CHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE---eecccccHHHHhc
Confidence            566777788877643    467789999999999999998854444578888899   9999988776654

>PRK08118 topology modulation protein; Reviewed

Probab=98.08  E-value=2e-06  Score=68.25  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeE
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAW  198 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~w  198 (261)
                      -|.|+|++|+||||||+.+++...+. -+|+...|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            58999999999999999999865444 45777773

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.05  E-value=1.7e-05  Score=65.54  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+.+.+.|.+++..+.  ...+.|+|+.|+|||+|++.+.+.
T Consensus         4 R~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~   43 (234)
T PF01637_consen    4 REKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE   43 (234)
T ss_dssp             -HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence            7889999999887643  578899999999999999999883

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.03  E-value=9.5e-06  Score=67.65  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=28.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      .--++|+|..|+|||||...+..  .....|.+..++
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~   47 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLI   47 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEE
Confidence            34678999999999999998887  466788777666

This is thought to be an ATPase involved in viral DNA packaging [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.99  E-value=3.5e-05  Score=57.81  Aligned_cols=86  Identities=12%  Similarity=-0.030  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKSILR  243 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  243 (261)
                      ..+.|+|++|+||||+++.+...  ........+.+   ..+........... .........     ..........+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~   71 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYI---DGEDILEEVLDQLL-LIIVGGKKA-----SGSGELRLRLAL   71 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEE---CCEEccccCHHHHH-hhhhhccCC-----CCCHHHHHHHHH
Confidence            57899999999999999999883  33222234444   44333222111111 001111110     113333344555


Q ss_pred             HhccCCe-EEEEeecCCC
Q 046049          244 DYLTDKK-YFIVLDDVFD  260 (261)
Q Consensus       244 ~~L~~kr-~LlVlDDVW~  260 (261)
                      ...+..+ .+|++|++..
T Consensus        72 ~~~~~~~~~viiiDei~~   89 (148)
T smart00382       72 ALARKLKPDVLILDEITS   89 (148)
T ss_pred             HHHHhcCCCEEEEECCcc
Confidence            5555444 8999999864

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=97.98  E-value=7.3e-05  Score=72.25  Aligned_cols=107  Identities=10%  Similarity=-0.001  Sum_probs=69.2

Q ss_pred             hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHcCCCc---ccccc--eeeEEecccccCCCCHHHHHHH
Q 046049          145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFNNNHV---KFYFD--CHAWVKNLSVSIAYDFGKILDD  216 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~vs~~~~~~~il~~  216 (261)
                      |++++++|...|...   .....++-|+|++|+|||+.++.|.+.-.-   .....  ..++|   ....-.++..++..
T Consensus       760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI---NCm~Lstp~sIYqv  836 (1164)
T PTZ00112        760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI---NGMNVVHPNAAYQV  836 (1164)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE---eCCccCCHHHHHHH
Confidence            999999998888542   233467889999999999999999763110   11122  13455   44455677888899


Q ss_pred             HHHHhCCCCCCccccCC-CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                      |+.++......    .. ...+....+...+.   ....+||||+|
T Consensus       837 I~qqL~g~~P~----~GlsS~evLerLF~~L~k~~r~v~IIILDEI  878 (1164)
T PTZ00112        837 LYKQLFNKKPP----NALNSFKILDRLFNQNKKDNRNVSILIIDEI  878 (1164)
T ss_pred             HHHHHcCCCCC----ccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence            99888544321    22 34445555555552   22358999986

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.96  E-value=7.4e-05  Score=65.45  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             hhHhHHHHHHHHhcCCCC-eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049          145 FERGREELFDLLIEGPPR-LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP  223 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~-~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~  223 (261)
                      |+.+...+..++...+.. ..++-|.|-.|.|||.+.+.+++...     -..+|+   ++-..|+...++..|+.+...
T Consensus        11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~---n~~ecft~~~lle~IL~~~~~   82 (438)
T KOG2543|consen   11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWL---NCVECFTYAILLEKILNKSQL   82 (438)
T ss_pred             hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----Ccceee---ehHHhccHHHHHHHHHHHhcc
Confidence            888888888888665542 44558899999999999999999542     245899   999999999999999999963


Q ss_pred             CCCCccccCCCHHHHHHHHHHhc-------cCCeEEEEeecC
Q 046049          224 PSRVSVIIGEDYQLKKSILRDYL-------TDKKYFIVLDDV  258 (261)
Q Consensus       224 ~~~~~~~~~~~~~~l~~~l~~~L-------~~kr~LlVlDDV  258 (261)
                      ...+......+.+.+.+.+..+-       +++.++||||++
T Consensus        83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna  124 (438)
T KOG2543|consen   83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA  124 (438)
T ss_pred             CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence            33311000101122222222221       256899999975

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.94  E-value=7.1e-05  Score=74.35  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCC
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRV  227 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~  227 (261)
                      +..|.+.|... ...+++.|.|++|.||||++......      ++..+|+   ++. .+-++..++..++..+......
T Consensus        19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~---~l~~~d~~~~~f~~~l~~~l~~~~~~   88 (903)
T PRK04841         19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWY---SLDESDNQPERFASYLIAALQQATNG   88 (903)
T ss_pred             chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEE---ecCcccCCHHHHHHHHHHHHHHhcCc
Confidence            34566666433 45789999999999999999987752      3368999   996 4456667777777777422211


Q ss_pred             ----c----cccCC-CHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049          228 ----S----VIIGE-DYQLKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       228 ----~----~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                          .    ...+. +...+...+...|.  +.+++|||||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~  130 (903)
T PRK04841         89 HCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDY  130 (903)
T ss_pred             ccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence                0    00111 23333333333332  67899999997

>PF13173 AAA_14: AAA domain

Probab=97.80  E-value=3.6e-05  Score=58.15  Aligned_cols=34  Identities=6%  Similarity=0.033  Sum_probs=26.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      -+++.|.|+.|+|||||++.++.+..   .....+++
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi   35 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYI   35 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceee
Confidence            46899999999999999999887432   33455666

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.73  E-value=8.1e-05  Score=67.57  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=25.5

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |..++...  ....+.++|++|+||||||+.+.+.
T Consensus        27 L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~   59 (413)
T PRK13342         27 LRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA   59 (413)
T ss_pred             HHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence            55555443  3557788999999999999999883

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.72  E-value=0.0001  Score=65.19  Aligned_cols=105  Identities=10%  Similarity=-0.077  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc-ccce-eeEEecccccC-CCCHHHHHHHHHHHhCCC
Q 046049          148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF-YFDC-HAWVKNLSVSI-AYDFGKILDDIIKSVMPP  224 (261)
Q Consensus       148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~vs~-~~~~~~il~~i~~~l~~~  224 (261)
                      -..++++.+..-.. -.-+.|+|.+|+|||||++.+.+.  +.. +=+. ++|+   .+.. ...+.++++.+...+...
T Consensus       119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~---lIgER~~EV~df~~~i~~~Vvas  192 (380)
T PRK12608        119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVL---LIDERPEEVTDMRRSVKGEVYAS  192 (380)
T ss_pred             hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEE---EecCCCCCHHHHHHHHhhhEEee
Confidence            34456776654332 345699999999999999988772  222 2233 4676   6654 467788889888877665


Q ss_pred             CCCccccCC-CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          225 SRVSVIIGE-DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       225 ~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      ..+...... ........+.+++  .+++.+||+|++
T Consensus       193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl  229 (380)
T PRK12608        193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL  229 (380)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence            431100000 1111222333344  589999999986

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.71  E-value=0.0001  Score=61.01  Aligned_cols=51  Identities=8%  Similarity=-0.083  Sum_probs=34.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      -+..++.+..++..  .....+.|+|++|+|||+||+.+++.  ........+++
T Consensus        22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i   72 (226)
T TIGR03420        22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYL   72 (226)
T ss_pred             cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEE
Confidence            34445566666543  33578889999999999999999873  22233344556

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK06893 DNA replication initiation factor; Validated

Probab=97.69  E-value=4.5e-05  Score=63.62  Aligned_cols=35  Identities=9%  Similarity=0.038  Sum_probs=26.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      .+.+.++|++|+|||+|++.+.+.  .........++
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~   73 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYI   73 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEe
Confidence            356899999999999999999983  33333345677

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.67  E-value=0.0001  Score=64.41  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKS  240 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~  240 (261)
                      +.+.-+-.||++|+||||||+.+.+..+-..    ..+|   +.|-.-.-..=.++|+++....                
T Consensus       160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfv---elSAt~a~t~dvR~ife~aq~~----------------  216 (554)
T KOG2028|consen  160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFV---ELSATNAKTNDVRDIFEQAQNE----------------  216 (554)
T ss_pred             CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEE---EEeccccchHHHHHHHHHHHHH----------------
Confidence            3577778999999999999999998544333    4456   6665544333445555443221                


Q ss_pred             HHHHhccCCeEEEEeecC
Q 046049          241 ILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~~kr~LlVlDDV  258 (261)
                         ..|.++|-.|++|.|
T Consensus       217 ---~~l~krkTilFiDEi  231 (554)
T KOG2028|consen  217 ---KSLTKRKTILFIDEI  231 (554)
T ss_pred             ---HhhhcceeEEEeHHh
Confidence               123467777778766

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.67  E-value=4.7e-05  Score=57.14  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=19.2

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |-|+|++|+||||+|+.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            568999999999999999984

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PHA00729 NTP-binding motif containing protein

Probab=97.65  E-value=0.0002  Score=59.12  Aligned_cols=32  Identities=13%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +++-+...  +..-|.|.|.+|+||||||..+.+
T Consensus         8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729          8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence            44444333  356788999999999999999987

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.63  E-value=0.00012  Score=60.12  Aligned_cols=42  Identities=14%  Similarity=0.069  Sum_probs=28.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+...-+++........+..+-.||++|+||||||..+.+.
T Consensus        32 l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e   73 (233)
T PF05496_consen   32 LKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE   73 (233)
T ss_dssp             HHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc
Confidence            333344444444444456888999999999999999999994

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK08116 hypothetical protein; Validated

Probab=97.63  E-value=0.00015  Score=62.02  Aligned_cols=48  Identities=19%  Similarity=0.110  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      .-+.++|.+|+|||.||..+++  .+..+-...+++         +..+++..|.....
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~---------~~~~ll~~i~~~~~  162 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFV---------NFPQLLNRIKSTYK  162 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEE---------EHHHHHHHHHHHHh
Confidence            3578999999999999999999  443333345666         34556666655443

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.62  E-value=0.00027  Score=58.60  Aligned_cols=98  Identities=13%  Similarity=0.063  Sum_probs=54.0

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH-hCCCCCCccccC
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS-VMPPSRVSVIIG  232 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~-l~~~~~~~~~~~  232 (261)
                      ++|.++=..-.++.|+|++|+|||+||..+...  ....-...+|+   +.. .++...+. ++... +........-..
T Consensus        14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi---~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~   86 (225)
T PRK09361         14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYI---DTE-GLSPERFK-QIAGEDFEELLSNIIIFE   86 (225)
T ss_pred             HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEE---ECC-CCCHHHHH-HHHhhChHhHhhCeEEEe
Confidence            344333355789999999999999999888763  22233567888   766 56555443 23322 000000000001


Q ss_pred             C-CHH---HHHHHHHHhccCCeEEEEeecC
Q 046049          233 E-DYQ---LKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       233 ~-~~~---~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      . +..   +....+...+..+--++|+|.+
T Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi  116 (225)
T PRK09361         87 PSSFEEQSEAIRKAEKLAKENVGLIVLDSA  116 (225)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence            1 332   3334444445456678999975

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.62  E-value=0.00037  Score=58.62  Aligned_cols=39  Identities=13%  Similarity=0.016  Sum_probs=27.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..+.++...-..+...+-++|.+|+|||+||..+.+.
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~  122 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE  122 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344444444332233457889999999999999999883

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.61  E-value=0.00012  Score=64.70  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=23.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCccccc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYF  193 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F  193 (261)
                      .+.-.-.||++|+||||||+.+..  .....|
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f   76 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF   76 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence            466666899999999999999988  444444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.61  E-value=5e-05  Score=56.42  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|.|.|++|+||||+|+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999877

...

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.59  E-value=0.00032  Score=57.46  Aligned_cols=96  Identities=9%  Similarity=-0.006  Sum_probs=55.1

Q ss_pred             HhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCC-CC---cccc
Q 046049          156 LIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS-RV---SVII  231 (261)
Q Consensus       156 L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~-~~---~~~~  231 (261)
                      |.++=+.-.++-|+|++|+|||+|+..+...  ........+|+   +... ++...+.+. .+...... ..   ....
T Consensus         5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi---~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~   77 (209)
T TIGR02237         5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYI---DTEG-LSPERFKQI-AEDRPERALSNFIVFEVF   77 (209)
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEE---ECCC-CCHHHHHHH-HHhChHHHhcCEEEEECC
Confidence            3333356789999999999999999887652  22334677899   7765 666665543 22220000 00   0001


Q ss_pred             CC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          232 GE-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       232 ~~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                      +. +.......+.+.+.. +--+||+|-+
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~lvVIDSi  106 (209)
T TIGR02237        78 DFDEQGVAIQKTSKFIDRDSASLVVVDSF  106 (209)
T ss_pred             CHHHHHHHHHHHHHHHhhcCccEEEEeCc
Confidence            11 233345555555543 4558999965

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK12377 putative replication protein; Provisional

Probab=97.54  E-value=0.00025  Score=59.75  Aligned_cols=35  Identities=14%  Similarity=-0.103  Sum_probs=27.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      ..-+.++|.+|+|||+||..+.+  .+.......+++
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i  135 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVV  135 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEE
Confidence            46788999999999999999998  444444445667

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.53  E-value=0.0014  Score=56.37  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcc-----cccceeeEEecccccCCCCHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVK-----FYFDCHAWVKNLSVSIAYDFGKILDDII  218 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~~~vs~~~~~~~il~~i~  218 (261)
                      -.+..+.|.++|.... ....=+.|||.+|.|||++++......-..     ..+ +++.|   .....++...+...|+
T Consensus        42 A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~v---q~P~~p~~~~~Y~~IL  117 (302)
T PF05621_consen   42 AKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYV---QMPPEPDERRFYSAIL  117 (302)
T ss_pred             HHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEE---ecCCCCChHHHHHHHH
Confidence            4455566666554332 344568999999999999999887532111     111 34555   7788999999999999


Q ss_pred             HHhCCCCCCccccCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          219 KSVMPPSRVSVIIGE-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       219 ~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                      .+++....     .. ....+...+...|+. +--+||+|.+
T Consensus       118 ~~lgaP~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~  154 (302)
T PF05621_consen  118 EALGAPYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEF  154 (302)
T ss_pred             HHhCcccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence            99998775     33 555555555556642 3346778876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK06696 uridine kinase; Validated

Probab=97.52  E-value=0.00016  Score=60.06  Aligned_cols=41  Identities=22%  Similarity=0.096  Sum_probs=33.2

Q ss_pred             hhHhHHHHHHHHhc-CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE-GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~-~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+..+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45667777777764 235688999999999999999998876

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.52  E-value=0.00055  Score=57.03  Aligned_cols=96  Identities=10%  Similarity=0.089  Sum_probs=56.6

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc------
Q 046049          159 GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS------  228 (261)
Q Consensus       159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~------  228 (261)
                      +-..-.++.|+|.+|+|||+|+..+.-......    .....+|+   +....++...+. +++++.+......      
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi---~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~   90 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI---DTEGTFRPERLV-QIAERFGLDPEEVLDNIYV   90 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEE---eCCCCcCHHHHH-HHHHHhccChHhHhcCEEE
Confidence            335568999999999999999998864212222    13578899   877777765543 3444443322110      


Q ss_pred             -cccCC-CHHHHHHHHHHhcc-C-CeEEEEeecC
Q 046049          229 -VIIGE-DYQLKKSILRDYLT-D-KKYFIVLDDV  258 (261)
Q Consensus       229 -~~~~~-~~~~l~~~l~~~L~-~-kr~LlVlDDV  258 (261)
                       ...+. +...+...+...+. . +--|||+|-+
T Consensus        91 ~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSi  124 (235)
T cd01123          91 ARAYNSDHQLQLLEELEAILIESSRIKLVIVDSV  124 (235)
T ss_pred             EecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence             00111 23333344555553 3 6689999976

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.52  E-value=0.00014  Score=57.92  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=27.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      ...+|.+.|+.|+||||+|+.++.  .....+...+++
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~   41 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL   41 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            456999999999999999999987  444445444555

>PRK07261 topology modulation protein; Provisional

Probab=97.52  E-value=0.00023  Score=56.62  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=24.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeEE
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAWV  199 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv  199 (261)
                      .|.|+|++|+||||||+.+.....+. -+.|...|-
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~   37 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ   37 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence            48999999999999999887532221 234555554

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.46  E-value=0.0011  Score=54.94  Aligned_cols=101  Identities=12%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-cc
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-SV  229 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-~~  229 (261)
                      +|.++-+.-.++.|+|++|+|||+|+..+........    .=...+|+   +....++...+. .+.......... ..
T Consensus        11 ~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi---~~e~~~~~~rl~-~~~~~~~~~~~~~~~   86 (226)
T cd01393          11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI---DTEGAFRPERLV-QLAVRFGLDPEEVLD   86 (226)
T ss_pred             HhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEE---ecCCCCCHHHHH-HHHHHhccchhhhhc
Confidence            3333335578999999999999999998755211111    01455888   777777765543 333433322110 00


Q ss_pred             c---cCC-CHHHHHHHHHHhcc----CCeEEEEeecCC
Q 046049          230 I---IGE-DYQLKKSILRDYLT----DKKYFIVLDDVF  259 (261)
Q Consensus       230 ~---~~~-~~~~l~~~l~~~L~----~kr~LlVlDDVW  259 (261)
                      .   ... +.+++...+...+.    .+--|||+|.+-
T Consensus        87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis  124 (226)
T cd01393          87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA  124 (226)
T ss_pred             cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence            0   011 55666666665543    344589999863

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.42  E-value=0.00032  Score=59.75  Aligned_cols=92  Identities=11%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--ccccCC----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVIIGE----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~----  233 (261)
                      +-.-++|+|..|+|||||++.+++  .++.+|. .++++   .+.... ...++..++.+.-......  ....+.    
T Consensus        68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~---~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~  142 (274)
T cd01133          68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFA---GVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGA  142 (274)
T ss_pred             cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEE---EeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHH
Confidence            346789999999999999999999  4554554 44555   666543 3456666665432111110  000011    


Q ss_pred             --CHHHHHHHHHHhc--c-CCeEEEEeecC
Q 046049          234 --DYQLKKSILRDYL--T-DKKYFIVLDDV  258 (261)
Q Consensus       234 --~~~~l~~~l~~~L--~-~kr~LlVlDDV  258 (261)
                        -.....-.+.+++  + ++.+|+++||+
T Consensus       143 r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl  172 (274)
T cd01133         143 RARVALTGLTMAEYFRDEEGQDVLLFIDNI  172 (274)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence              1112233456666  3 89999999997

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK07667 uridine kinase; Provisional

Probab=97.40  E-value=0.00025  Score=57.55  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.|.+.+........+|+|-|.+|+||||+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567777766566678999999999999999998876

>PRK08181 transposase; Validated

Probab=97.36  E-value=0.0006  Score=58.17  Aligned_cols=34  Identities=9%  Similarity=-0.194  Sum_probs=25.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      .-+.++|++|+|||.||..+.+  ..........++
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~  140 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFT  140 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeee
Confidence            3488999999999999999987  333333344566

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.35  E-value=0.0017  Score=56.82  Aligned_cols=100  Identities=10%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V  229 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~  229 (261)
                      +|.++=+.-.++-|+|++|+|||+|+..+.-.......+    ...+||   +...+|++..+.+ +++.++...... .
T Consensus        94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi---~te~~f~~~rl~~-~~~~~g~~~~~~l~  169 (317)
T PRK04301         94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI---DTEGTFRPERIEQ-MAEALGLDPDEVLD  169 (317)
T ss_pred             HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE---eCCCCcCHHHHHH-HHHHcCCChHhhhc
Confidence            343333557899999999999999998876432221111    367899   8888888877654 445554332110 0


Q ss_pred             c------cCC-CHHHHHHHHHHhccC--CeEEEEeecC
Q 046049          230 I------IGE-DYQLKKSILRDYLTD--KKYFIVLDDV  258 (261)
Q Consensus       230 ~------~~~-~~~~l~~~l~~~L~~--kr~LlVlDDV  258 (261)
                      .      ... ....+...+...+..  +--|||+|-+
T Consensus       170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi  207 (317)
T PRK04301        170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL  207 (317)
T ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence            0      011 223344555555643  3348999975

>PRK08727 hypothetical protein; Validated

Probab=97.34  E-value=0.00025  Score=59.26  Aligned_cols=34  Identities=12%  Similarity=-0.000  Sum_probs=26.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      ..+.|+|+.|+|||+|++.+.+  ....+....+++
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~   75 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYL   75 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            4599999999999999999987  334433455666

>PRK04195 replication factor C large subunit; Provisional

Probab=97.33  E-value=0.0014  Score=60.72  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=32.6

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..++.|.+|+..-  ....+.+-|+|++|+||||+|+.+.+.
T Consensus        19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            566677777777532  122678999999999999999999884

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.30  E-value=0.0013  Score=57.09  Aligned_cols=106  Identities=16%  Similarity=0.062  Sum_probs=56.1

Q ss_pred             hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHh
Q 046049          145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV  221 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l  221 (261)
                      ++..++.|..++...   ......+.++|++|+|||+||+.+.+.  ....|   ..+   ..+...... .+...+..+
T Consensus         9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~---~~~~~~~~~-~l~~~l~~~   79 (305)
T TIGR00635         9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KIT---SGPALEKPG-DLAAILTNL   79 (305)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEe---ccchhcCch-hHHHHHHhc
Confidence            566677777777531   233556789999999999999999883  22222   112   221111222 233334444


Q ss_pred             CCCCCC-ccccCCCHHHHHHHHHHhccCCeEEEEeecCC
Q 046049          222 MPPSRV-SVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF  259 (261)
Q Consensus       222 ~~~~~~-~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW  259 (261)
                      ....-- .+++..=.....+.+...+.+.+..+|+++.+
T Consensus        80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~  118 (305)
T TIGR00635        80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGP  118 (305)
T ss_pred             ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCc
Confidence            322100 01111101123455677777777778887653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.28  E-value=0.00061  Score=65.80  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++..+  ....+-++|++|+||||||+.+.+
T Consensus        42 ~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~   74 (725)
T PRK13341         42 LLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN   74 (725)
T ss_pred             HHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            344445433  355678999999999999999998

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.25  E-value=0.0021  Score=53.47  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=23.2

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          160 PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       160 ~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+..+++|.|++|+|||||++.+..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999998876

>TIGR02012 tigrfam_recA protein RecA

Probab=97.22  E-value=0.0014  Score=57.31  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~  239 (261)
                      +.-+++-|+|++|+||||||..+...  ....=...+||   ...+.++..     .+++++.......-... +.++..
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yI---d~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l  122 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFI---DAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL  122 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---cccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence            56689999999999999999877652  22233466788   776666653     34555543221000011 455555


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ..+...++ +.--+||+|-|
T Consensus       123 ~~~~~li~~~~~~lIVIDSv  142 (321)
T TIGR02012       123 EIAETLVRSGAVDIIVVDSV  142 (321)
T ss_pred             HHHHHHhhccCCcEEEEcch
Confidence            66655554 45678899975

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0014  Score=62.00  Aligned_cols=88  Identities=16%  Similarity=0.229  Sum_probs=58.9

Q ss_pred             cHHHHHHHHHHHHhccCCCCCCcccccCc-------ccc-----cccccCCCCCCCchh--hhHhHHHHHHHHhc----C
Q 046049           98 GLHSKIIDIRNRMEQLPPSDNDFDINERR-------DKL-----IHLLIEGQPRVDESE--FERGREELFDLLIE----G  159 (261)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~----~  159 (261)
                      .+.+-+.+-..+++.+......|++..+.       +..     ..+........+++.  +++.++.|++.+.-    +
T Consensus       355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg  434 (906)
T KOG2004|consen  355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG  434 (906)
T ss_pred             HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence            55566666677888888888888765411       110     111111111222222  99999999998853    3


Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          160 PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       160 ~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+-++++.+|++|+|||.+|+.|..
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~  460 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIAR  460 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHH
Confidence            45679999999999999999999987

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.21  E-value=0.00026  Score=54.99  Aligned_cols=23  Identities=13%  Similarity=0.052  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-|.|.||+|+|||||++.+.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHH
Confidence            45789999999999999999986

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.21  E-value=0.0021  Score=56.55  Aligned_cols=105  Identities=17%  Similarity=0.063  Sum_probs=55.9

Q ss_pred             hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHh
Q 046049          145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSV  221 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l  221 (261)
                      ++..++.+..++..   .......+.++|++|+||||||+.+.+..  ...|.   .+   ..+ .......+..++..+
T Consensus        30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~~---~~---~~~-~~~~~~~l~~~l~~l  100 (328)
T PRK00080         30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNIR---IT---SGP-ALEKPGDLAAILTNL  100 (328)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCeE---EE---ecc-cccChHHHHHHHHhc
Confidence            66777776666643   23345678899999999999999998843  22221   12   111 122223344555554


Q ss_pred             CCCCCC-ccccCCCHHHHHHHHHHhccCCeEEEEeecC
Q 046049          222 MPPSRV-SVIIGEDYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       222 ~~~~~~-~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      ....-- .+++..=.....+.+...+.+.+..+++|+.
T Consensus       101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~  138 (328)
T PRK00080        101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKG  138 (328)
T ss_pred             ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccC
Confidence            321100 0111110112334456667777777777764

>cd01394 radB RadB

Probab=97.20  E-value=0.0021  Score=53.02  Aligned_cols=51  Identities=18%  Similarity=0.029  Sum_probs=33.4

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD  209 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~  209 (261)
                      ++|..+=..-.++.|.|.+|+|||||+..+...  ....=...+|+   +....+.
T Consensus        10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi---~~e~~~~   60 (218)
T cd01394          10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYI---DTEGLSS   60 (218)
T ss_pred             HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ECCCCCH
Confidence            344333355789999999999999999887652  21222355677   6555543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.19  E-value=0.0016  Score=56.02  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+|+|++|+||||++..+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~  216 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAA  216 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999998887765

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.19  E-value=0.00048  Score=61.51  Aligned_cols=42  Identities=17%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             hhHhHHHHHHHHhc---CC--------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE---GP--------PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~--------~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++..+++|.+.+..   .+        ...+-+.++|++|+|||+||+.+.+.
T Consensus       127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~  179 (364)
T TIGR01242       127 LEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  179 (364)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            78888888776632   10        12455889999999999999999983

Many proteins may score above the trusted cutoff because an internal

>PTZ00301 uridine kinase; Provisional

Probab=97.19  E-value=0.00036  Score=57.40  Aligned_cols=23  Identities=13%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|.|.+|+||||||+.+.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            57999999999999999988765

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.18  E-value=0.00062  Score=62.28  Aligned_cols=48  Identities=23%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccc-cc-eeeEEecccccCCCCHHHHHHHHHHHh
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-FD-CHAWVKNLSVSIAYDFGKILDDIIKSV  221 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~vs~~~~~~~il~~i~~~l  221 (261)
                      ..-+.|+|++|+|||+|++.+.+  .+... .. ..+|+   +      ..+++.++...+
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi---~------~~~f~~~~~~~~  179 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYI---T------SEKFLNDLVDSM  179 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE---E------HHHHHHHHHHHH
Confidence            45699999999999999999998  43332 33 33455   3      345555555544

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0011  Score=62.66  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=37.7

Q ss_pred             hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc
Q 046049          145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF  193 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F  193 (261)
                      .++.+++|++.|.-    ..-+-.+++.|||+|+|||.|++.|..  .....|
T Consensus       328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf  378 (782)
T COG0466         328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF  378 (782)
T ss_pred             chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence            88999999999843    233458999999999999999999987  444444

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.18  E-value=0.0013  Score=60.51  Aligned_cols=29  Identities=17%  Similarity=0.130  Sum_probs=23.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFY  192 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~  192 (261)
                      ...-+.|+|++|+|||+|++.+.+  .+...
T Consensus       147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~  175 (450)
T PRK00149        147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEK  175 (450)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHH--HHHHh
Confidence            345689999999999999999998  44443

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.17  E-value=0.00032  Score=56.91  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ||+|.|++|+||||+|+.+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~   21 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ   21 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999876

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR00235 udk uridine kinase

Probab=97.17  E-value=0.00039  Score=56.98  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...+|+|+|++|+|||||++.+..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999976

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK06526 transposase; Provisional

Probab=97.17  E-value=0.00069  Score=57.37  Aligned_cols=22  Identities=23%  Similarity=0.028  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-+.++|++|+|||+||..+.+
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHH
Confidence            4578999999999999999876

>PRK09354 recA recombinase A; Provisional

Probab=97.15  E-value=0.002  Score=56.82  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC-CCHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG-EDYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~-~~~~~l~  239 (261)
                      +.-+++-|+|++|+||||||..+...  ....=...+||   .....+++.     .+++++.....---.. .+.++..
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yI---d~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l  127 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFI---DAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQAL  127 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---CCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence            56689999999999999999887652  22333567899   777777753     4555554322100001 1455555


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ..+...++ ++--|||+|-|
T Consensus       128 ~i~~~li~s~~~~lIVIDSv  147 (349)
T PRK09354        128 EIADTLVRSGAVDLIVVDSV  147 (349)
T ss_pred             HHHHHHhhcCCCCEEEEeCh
Confidence            56665554 45568999975

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.15  E-value=0.00037  Score=57.11  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+|.|.+|+|||||++.+..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999987

>PRK09183 transposase/IS protein; Provisional

Probab=97.13  E-value=0.0011  Score=56.33  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+.|+|++|+|||+||..+.+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4577999999999999999976

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.13  E-value=0.002  Score=56.58  Aligned_cols=53  Identities=8%  Similarity=-0.083  Sum_probs=32.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      +...++....++..=+....-+.++|+.|+|||+||..+.+.  +...-..++++
T Consensus       165 ~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~  217 (329)
T PRK06835        165 MEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYR  217 (329)
T ss_pred             HHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEE
Confidence            444444444455421112366899999999999999999883  32222244556

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.13  E-value=0.0011  Score=55.56  Aligned_cols=23  Identities=9%  Similarity=0.023  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.|+|+.|+|||+|++.+.+
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~   67 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACA   67 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999887

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.12  E-value=0.0019  Score=56.41  Aligned_cols=88  Identities=17%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC-CCHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG-EDYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~-~~~~~l~  239 (261)
                      +.-+++-|+|++|+||||||..+.-.  ....-...+||   .....+++.     .+++++.....---.. .+.++..
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyI---d~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l  122 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFI---DAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL  122 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEE---CccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH
Confidence            55678999999999999999987652  22233567888   777766653     3444443321100001 1455566


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ..+...++ +.--|||+|-|
T Consensus       123 ~i~~~li~s~~~~lIVIDSv  142 (325)
T cd00983         123 EIADSLVRSGAVDLIVVDSV  142 (325)
T ss_pred             HHHHHHHhccCCCEEEEcch
Confidence            66655554 45578999975

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.11  E-value=0.0015  Score=59.18  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...+.|+|+.|+|||+|++.+++.
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~  159 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNE  159 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456889999999999999999983

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.11  E-value=0.0011  Score=60.66  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.|+|+.|+|||+|++.+.+
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~  163 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVH  163 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHH
Confidence            45688999999999999999998

>PRK08233 hypothetical protein; Provisional

Probab=97.09  E-value=0.00046  Score=54.96  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+|+|.|++|+||||||+.+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            479999999999999999999873

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.09  E-value=0.002  Score=61.48  Aligned_cols=111  Identities=18%  Similarity=0.083  Sum_probs=61.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccc---eeeEEecccccCC---CCHHHHHHHH-
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD---CHAWVKNLSVSIA---YDFGKILDDI-  217 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~vs~~---~~~~~il~~i-  217 (261)
                      .+..+..+...+..  .....+.|+|++|+||||||+.+++..+...++.   ...|+   .+...   .+...+...+ 
T Consensus       159 qs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv---~i~~~~l~~d~~~i~~~ll  233 (615)
T TIGR02903       159 QERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV---EVDGTTLRWDPREVTNPLL  233 (615)
T ss_pred             CcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE---EEechhccCCHHHHhHHhc
Confidence            44445556665543  2356799999999999999999987543333331   23566   55321   2222222211 


Q ss_pred             --------------HHHhCCCC----------CC---ccccCCCHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049          218 --------------IKSVMPPS----------RV---SVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD  260 (261)
Q Consensus       218 --------------~~~l~~~~----------~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW~  260 (261)
                                    +...+...          .+   .+.++.=....+..|...+.+++++++.|+.|.
T Consensus       234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~  303 (615)
T TIGR02903       234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP  303 (615)
T ss_pred             CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence                          11111100          00   012233122357788999999999998776553

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.08  E-value=0.0021  Score=53.26  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+-|+|..|+|||.|.+.+++
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~   56 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIAN   56 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            355688999999999999999998

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.08  E-value=0.0031  Score=55.67  Aligned_cols=100  Identities=12%  Similarity=0.093  Sum_probs=59.1

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c-ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F-YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V  229 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~  229 (261)
                      +|.++=..-.+.=|+|++|+|||+|+..+.-.....   . .-...+||   +...+|++..+.+ +++.++...... .
T Consensus       118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyI---dTE~tF~peRl~~-ia~~~g~d~~~~l~  193 (344)
T PLN03187        118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYI---DTEGTFRPDRIVP-IAERFGMDADAVLD  193 (344)
T ss_pred             hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEE---EcCCCCCHHHHHH-HHHHcCCChhhhcC
Confidence            343333556888899999999999998774321221   1 12467899   8889999888755 566666543210 0


Q ss_pred             c---cCC-CHHHHHHH---HHHhcc-CCeEEEEeecC
Q 046049          230 I---IGE-DYQLKKSI---LRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       230 ~---~~~-~~~~l~~~---l~~~L~-~kr~LlVlDDV  258 (261)
                      +   ... +.+++...   +...+. .+=-|||+|.+
T Consensus       194 ~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi  230 (344)
T PLN03187        194 NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV  230 (344)
T ss_pred             eEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            0   111 44443333   333332 33457899975

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.08  E-value=0.0016  Score=53.36  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++-+|||-|.+|+||||+|+.++.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~   30 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSE   30 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999988

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.07  E-value=0.0031  Score=55.36  Aligned_cols=39  Identities=15%  Similarity=-0.020  Sum_probs=30.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+..++..+  ..+.+-++|++|+||||+|+.+.+
T Consensus        20 ~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~   58 (337)
T PRK12402         20 QDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR   58 (337)
T ss_pred             CHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            566677777776543  344577999999999999999876

>TIGR00959 ffh signal recognition particle protein

Probab=97.05  E-value=0.0042  Score=56.50  Aligned_cols=41  Identities=17%  Similarity=0.075  Sum_probs=28.3

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....++|+++|....       .+..++.++|++|+||||.+..+..
T Consensus        74 ~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        74 IKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             HHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence            4455566666664321       2368999999999999998665543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.05  E-value=0.0016  Score=59.69  Aligned_cols=23  Identities=22%  Similarity=0.171  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.|+|..|+|||+|++.+.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~  163 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKN  163 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHH
Confidence            45688999999999999999988

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.04  E-value=0.0034  Score=48.50  Aligned_cols=40  Identities=13%  Similarity=0.110  Sum_probs=28.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD  209 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~  209 (261)
                      ++.|+|++|+||||++..+...  ....-.+.+++   +....+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~---~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYV---DIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEE---ECCcchH
Confidence            4689999999999999988762  23333456777   6555443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.04  E-value=0.0024  Score=52.90  Aligned_cols=21  Identities=10%  Similarity=0.115  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|.+|+||||||+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            589999999999999998876

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK06921 hypothetical protein; Provisional

Probab=97.04  E-value=0.0017  Score=55.44  Aligned_cols=35  Identities=17%  Similarity=0.013  Sum_probs=26.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccc-cceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFY-FDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv  199 (261)
                      ..-+.++|..|+|||+||..+.+  .+... -...+++
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~  152 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYF  152 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEE
Confidence            46788999999999999999988  34333 3345666

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.04  E-value=0.0052  Score=54.28  Aligned_cols=101  Identities=8%  Similarity=0.045  Sum_probs=60.4

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-  228 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-  228 (261)
                      ++|.++=..-.++-|.|.+|+|||+|+..+.-......    .-...+||   +...+|+++.+ .+|++.++...... 
T Consensus       114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyI---dtE~~f~~eRl-~qia~~~~~~~~~~l  189 (342)
T PLN03186        114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI---DTEGTFRPQRL-IQIAERFGLNGADVL  189 (342)
T ss_pred             HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEE---ECCCCccHHHH-HHHHHHcCCChhhhc
Confidence            34444435578899999999999999987764222211    11367899   99999988876 45566665443210 


Q ss_pred             cc---cCC-CHHHHHHHHH---Hhc-cCCeEEEEeecC
Q 046049          229 VI---IGE-DYQLKKSILR---DYL-TDKKYFIVLDDV  258 (261)
Q Consensus       229 ~~---~~~-~~~~l~~~l~---~~L-~~kr~LlVlDDV  258 (261)
                      .+   ... +.+++...+.   ..+ ..+--|||+|-+
T Consensus       190 ~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI  227 (342)
T PLN03186        190 ENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA  227 (342)
T ss_pred             cceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence            01   011 4444443333   233 345568999965

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.03  E-value=0.00051  Score=51.18  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=19.0

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|.|++|+||||+|+.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998773

...

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.02  E-value=0.0018  Score=63.84  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+++++.+++.|.....  .-+.++|++|+|||++|..+..
T Consensus       184 r~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~  222 (821)
T CHL00095        184 REKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQ  222 (821)
T ss_pred             cHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHH
Confidence            99999999999976542  2335999999999999998866

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.00  E-value=0.0015  Score=62.18  Aligned_cols=41  Identities=12%  Similarity=0.004  Sum_probs=31.0

Q ss_pred             hhHhHHHHHHHHhcCC---CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP---PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~---~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++++..+|....   ....++.++|++|+||||+++.+..
T Consensus        89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602        89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4555666777775432   2346799999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.99  E-value=0.006  Score=52.20  Aligned_cols=98  Identities=17%  Similarity=0.002  Sum_probs=60.4

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-  233 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-  233 (261)
                      .|-.+-+.-.++=|+|+.|.||||+|.++.-.  ....-...+|+   .--+.+++..+..--...+..-.- .+.... 
T Consensus        52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fI---DtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e  125 (279)
T COG0468          52 ALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFI---DTEHALDPERAKQLGVDLLDNLLV-SQPDTGE  125 (279)
T ss_pred             HhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEE---eCCCCCCHHHHHHHHHhhhcceeE-ecCCCHH
Confidence            34344466789999999999999999887663  33333478999   888999987754332221111000 011122 


Q ss_pred             CHHHHHHHHHHhccCCeEEEEeecC
Q 046049          234 DYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       234 ~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      ...++...+......+=-|||+|-|
T Consensus       126 ~q~~i~~~~~~~~~~~i~LvVVDSv  150 (279)
T COG0468         126 QQLEIAEKLARSGAEKIDLLVVDSV  150 (279)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEecC
Confidence            4445555555555555678888876

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.99  E-value=0.0085  Score=58.67  Aligned_cols=41  Identities=12%  Similarity=0.269  Sum_probs=33.5

Q ss_pred             hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|+++|..    +.....++.++|++|+||||+++.+..
T Consensus       327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~  371 (784)
T PRK10787        327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK  371 (784)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            78888889888753    123456899999999999999999987

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.98  E-value=0.0047  Score=53.95  Aligned_cols=100  Identities=10%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-c
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-V  229 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~  229 (261)
                      +|.++=+.-.++-|+|++|+|||+|+..+.-......    .=...+||   +...+|+++.+.+ ++++++...... .
T Consensus        88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYI---dtE~~f~~eRi~~-~a~~~g~d~~~~l~  163 (313)
T TIGR02238        88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYI---DTEGTFRPDRIRA-IAERFGVDPDAVLD  163 (313)
T ss_pred             HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEE---EcCCCCCHHHHHH-HHHHcCCChHHhcC
Confidence            4433335568999999999999999987543212211    11367899   8888899888754 566665543210 0


Q ss_pred             cc---CC-CHHHHH---HHHHHhcc-CCeEEEEeecC
Q 046049          230 II---GE-DYQLKK---SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       230 ~~---~~-~~~~l~---~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ++   .. +.+++.   ..+...+. ++-=|||+|.+
T Consensus       164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi  200 (313)
T TIGR02238       164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSI  200 (313)
T ss_pred             cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence            00   11 333333   33333443 34557999975

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.98  E-value=0.009  Score=57.64  Aligned_cols=103  Identities=21%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCC
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRV  227 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~  227 (261)
                      +..|++.|... .+.+.+.|..|.|.|||||+-....  ... .=...+|.   ++.. +-++..++..++..++.-.+.
T Consensus        24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wl---slde~dndp~rF~~yLi~al~~~~p~   96 (894)
T COG2909          24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWL---SLDESDNDPARFLSYLIAALQQATPT   96 (894)
T ss_pred             cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEe---ecCCccCCHHHHHHHHHHHHHHhCcc
Confidence            45677777654 4689999999999999999987754  111 12357899   8864 567888888888888744331


Q ss_pred             c--------cccCC-CHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049          228 S--------VIIGE-DYQLKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       228 ~--------~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                      .        +.... +...+...+..-|.  .+..++||||-
T Consensus        97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDy  138 (894)
T COG2909          97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDY  138 (894)
T ss_pred             ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccc
Confidence            0        00011 34444444444332  45789999993

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.98  E-value=0.0045  Score=53.88  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=28.9

Q ss_pred             hhHhHHHHHHHHhcCC--CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGP--PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~--~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +........+++..-.  ....-+-++|..|+|||.||..+.+.
T Consensus       136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~  179 (306)
T PRK08939        136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE  179 (306)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3334444555554321  13456889999999999999999984

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.98  E-value=0.0025  Score=62.04  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=31.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+.+++.+++.|....  ..-+.++|++|+|||++|+.+.+
T Consensus       187 r~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~  225 (731)
T TIGR02639       187 REDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL  225 (731)
T ss_pred             cHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            9999999999886653  22345899999999999998876

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.97  E-value=0.00096  Score=57.11  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++.+....   +-+-++|+.|+|||++++....
T Consensus        22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~   55 (272)
T PF12775_consen   22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS   55 (272)
T ss_dssp             HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence            355666666543   5568999999999999998876

>PRK06547 hypothetical protein; Provisional

Probab=96.96  E-value=0.0013  Score=52.40  Aligned_cols=26  Identities=19%  Similarity=0.061  Sum_probs=23.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....+|+|.|++|+||||+|+.+...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999763

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.96  E-value=0.00094  Score=53.45  Aligned_cols=45  Identities=13%  Similarity=0.045  Sum_probs=28.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII  218 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~  218 (261)
                      ..-+.++|+.|+|||.||..+.+.  ...+=....|+         +..+++..|-
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~---------~~~~L~~~l~   91 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFI---------TASDLLDELK   91 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEE---------EHHHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEe---------ecCceecccc
Confidence            355889999999999999999873  32222234566         3455555543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.96  E-value=0.0022  Score=57.85  Aligned_cols=42  Identities=14%  Similarity=0.013  Sum_probs=31.7

Q ss_pred             hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +++.+++|.+.+..   .        -...+-|.++|++|+|||++|+.+.+.
T Consensus       136 l~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~  188 (389)
T PRK03992        136 LEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  188 (389)
T ss_pred             cHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence            77777777776532   1        123456889999999999999999883

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.94  E-value=0.0008  Score=51.33  Aligned_cols=21  Identities=10%  Similarity=0.112  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|-++|++|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999875

...

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.94  E-value=0.0028  Score=53.69  Aligned_cols=50  Identities=14%  Similarity=0.027  Sum_probs=33.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      +..=+.++|.+|+|||.||.++.+.  +...=-.+.++         +..+++.++-....
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~---------~~~el~~~Lk~~~~  153 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFI---------TAPDLLSKLKAAFD  153 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEE---------EHHHHHHHHHHHHh
Confidence            4567889999999999999999984  33221233445         34555555555444

>PRK10867 signal recognition particle protein; Provisional

Probab=96.93  E-value=0.0058  Score=55.63  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             hhHhHHHHHHHHhcC-------CCCeEEEEEEeCCCccHHHHHHHH
Q 046049          145 FERGREELFDLLIEG-------PPRLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      ..-..++|.++|...       .....+|.++|++|+||||.+..+
T Consensus        75 ~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867         75 IKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             HHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHH
Confidence            444455677766432       134689999999999999966544

>TIGR00763 lon ATP-dependent protease La

Probab=96.93  E-value=0.019  Score=56.36  Aligned_cols=86  Identities=15%  Similarity=0.269  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHHHHhccCCCCCCcccccCc-----ccccccccCCCCCCC---------chh--hhHhHHHHHHHHhc---
Q 046049           98 GLHSKIIDIRNRMEQLPPSDNDFDINERR-----DKLIHLLIEGQPRVD---------ESE--FERGREELFDLLIE---  158 (261)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~--~~~~~~~l~~~L~~---  158 (261)
                      .+..++.+-..|+..+......|....+.     ..+...  .+....+         +..  .+..++.|.+++..   
T Consensus       264 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~--~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~  341 (775)
T TIGR00763       264 EVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGK--YSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKL  341 (775)
T ss_pred             HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcc--cccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Confidence            66667777777787777777666543310     000000  0000000         000  45666677765531   


Q ss_pred             -CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          159 -GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       159 -~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                       ...+..++.++|++|+|||++|+.+.+
T Consensus       342 ~~~~~~~~lll~GppG~GKT~lAk~iA~  369 (775)
T TIGR00763       342 RGKMKGPILCLVGPPGVGKTSLGKSIAK  369 (775)
T ss_pred             hcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence             222345899999999999999999988

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.92  E-value=0.0058  Score=53.45  Aligned_cols=101  Identities=9%  Similarity=0.035  Sum_probs=58.0

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-  228 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-  228 (261)
                      ++|..+=+.-.++-|+|.+|+|||||+..+........    .-...+|+   +....|+...+ .++.+.++...... 
T Consensus        87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyI---dtE~~f~~~Rl-~~ia~~~~~~~~~~l  162 (316)
T TIGR02239        87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYI---DTEGTFRPERL-LAIAERYGLNPEDVL  162 (316)
T ss_pred             HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEE---ECCCCCCHHHH-HHHHHHcCCChHHhh
Confidence            34444435678999999999999999988754211111    11356899   87777887764 44555555432210 


Q ss_pred             cc---cCC-CHHHHHHHH---HHhcc-CCeEEEEeecC
Q 046049          229 VI---IGE-DYQLKKSIL---RDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       229 ~~---~~~-~~~~l~~~l---~~~L~-~kr~LlVlDDV  258 (261)
                      .+   ... +.+++...+   ...+. .+--|||+|-+
T Consensus       163 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI  200 (316)
T TIGR02239       163 DNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA  200 (316)
T ss_pred             ccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence            00   011 334433333   33343 34568999975

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK05642 DNA replication initiation factor; Validated

Probab=96.91  E-value=0.0013  Score=55.05  Aligned_cols=35  Identities=9%  Similarity=0.014  Sum_probs=25.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      ...+.|+|..|+|||.|++.+.+  .....-...+++
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~   79 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYL   79 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEe
Confidence            36789999999999999999987  322222344566

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.91  E-value=0.008  Score=54.82  Aligned_cols=41  Identities=24%  Similarity=0.144  Sum_probs=29.8

Q ss_pred             hhHhHHHHHHHHhcCC------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-.++|++.|....      ....+|.++|++|+||||++..+..
T Consensus        71 ~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         71 IKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             HHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4445556666664321      2468999999999999999988765

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.90  E-value=0.0038  Score=52.94  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-cc---cC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-VI---IG  232 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-~~---~~  232 (261)
                      ..-.+.=|+|++|+|||.|+..+.-+..+...    =...+|+   +-...|+...+. +|++....+.... ..   ..
T Consensus        36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyi---dTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~  111 (256)
T PF08423_consen   36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYI---DTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIR  111 (256)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEE---ESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE
T ss_pred             CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEE---eCCCCCCHHHHH-HHhhccccccchhhhceeeee
Confidence            34579999999999999999877543233221    1357899   888899988775 4666654332110 00   01


Q ss_pred             C-CHHHHHHH---HHHhc-cCCeEEEEeecC
Q 046049          233 E-DYQLKKSI---LRDYL-TDKKYFIVLDDV  258 (261)
Q Consensus       233 ~-~~~~l~~~---l~~~L-~~kr~LlVlDDV  258 (261)
                      . +.+++...   +...+ .++=-|||+|.+
T Consensus       112 ~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI  142 (256)
T PF08423_consen  112 VFDLEELLELLEQLPKLLSESKIKLIVIDSI  142 (256)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred             cCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence            1 34444433   33334 345679999975

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.90  E-value=0.00099  Score=58.78  Aligned_cols=54  Identities=11%  Similarity=0.127  Sum_probs=39.8

Q ss_pred             hhHhHHHHHHHHhcC----CCCeEEEEEEeCCCccHHHHHHHHHcCCCc-----ccccceeeE
Q 046049          145 FERGREELFDLLIEG----PPRLSVVAILDGIGFDMTAFAADAFNNNHV-----KFYFDCHAW  198 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~----~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-----~~~F~~~~w  198 (261)
                      .++.++++++++...    ....+++.++|++|+||||||..+.+....     .+.|-..-|
T Consensus        56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            777888888888542    235689999999999999999999773322     224555556

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN03025 replication factor C subunit; Provisional

Probab=96.90  E-value=0.0051  Score=53.86  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=26.6

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++.++.|..++..+  +.+.+-++|++|+||||+|+.+.+
T Consensus        19 ~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~   56 (319)
T PLN03025         19 EDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH   56 (319)
T ss_pred             HHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            33445555555433  244567899999999999998876

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.89  E-value=0.0066  Score=52.92  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP  223 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~  223 (261)
                      +|.++=..-.++-|+|++|+|||||+..+.-......    .=...+||   +...+|+...+. ++++.++.
T Consensus        87 ~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi---~te~~f~~~rl~-~~~~~~gl  155 (310)
T TIGR02236        87 LLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI---DTENTFRPERIM-QMAEARGL  155 (310)
T ss_pred             HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE---ECCCCCCHHHHH-HHHHHcCC
Confidence            3433334578999999999999999988865322211    01267899   888888887754 44555543

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.89  E-value=0.00076  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|+|.|..|+||||+++.+.+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988773

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.86  E-value=0.0017  Score=60.21  Aligned_cols=42  Identities=17%  Similarity=0.070  Sum_probs=29.8

Q ss_pred             hhHhHHHHHHHHhc-----------CCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE-----------GPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..+++|.+.+.-           +-...+-+.++|++|+|||++|+.+++.
T Consensus       187 l~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e  239 (512)
T TIGR03689       187 LDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS  239 (512)
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence            56666666665421           0123455889999999999999999983

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.86  E-value=0.0019  Score=57.09  Aligned_cols=26  Identities=15%  Similarity=0.141  Sum_probs=23.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .....++|+|++|+|||.+|+.+++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~e  171 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKK  171 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999994

>PRK06762 hypothetical protein; Provisional

Probab=96.86  E-value=0.00092  Score=52.60  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998876

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.85  E-value=0.007  Score=52.76  Aligned_cols=41  Identities=15%  Similarity=0.103  Sum_probs=32.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+...+.+..++..+ .-.+++-++|++|+||||+|+.+++.
T Consensus        26 ~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~   66 (316)
T PHA02544         26 PAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE   66 (316)
T ss_pred             cHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            566677777777653 33568888999999999999999873

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.84  E-value=0.012  Score=51.36  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC----CCcccccceeeEEeccc-ccCCCCHHHHHHHHHHH
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN----NHVKFYFDCHAWVKNLS-VSIAYDFGKILDDIIKS  220 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~~~-vs~~~~~~~il~~i~~~  220 (261)
                      +..++.+..++..+ .-.+.+-++|+.|+||||+|+.++..    .....|+|...|.   . -+.....+. .+++.+.
T Consensus        10 ~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~---~~~~~~i~v~~-ir~~~~~   84 (313)
T PRK05564         10 ENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK---PINKKSIGVDD-IRNIIEE   84 (313)
T ss_pred             HHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec---cccCCCCCHHH-HHHHHHH
Confidence            44456677777544 23467789999999999999988762    1234577777776   5 344455555 4455554


Q ss_pred             hC
Q 046049          221 VM  222 (261)
Q Consensus       221 l~  222 (261)
                      +.
T Consensus        85 ~~   86 (313)
T PRK05564         85 VN   86 (313)
T ss_pred             Hh
Confidence            44

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.84  E-value=0.00092  Score=53.52  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|.|+|++|+||||+++.+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.81  E-value=0.00078  Score=54.71  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|++|+|||||++.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998866

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0062  Score=51.41  Aligned_cols=92  Identities=9%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecc---cccCCCCHHHHHHHHHHHhCCCCCCccccCC--CHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNL---SVSIAYDFGKILDDIIKSVMPPSRVSVIIGE--DYQ  236 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~--~~~  236 (261)
                      .-.++++||..|+|||||++.+..  -.+..+. .++..-.   ..+ .....+-..+++..++........++.  +-.
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt~G-~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG  113 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILG--LEEPTSG-EILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGG  113 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHc--CcCCCCc-eEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence            457999999999999999999987  3332222 2333000   111 122344566777777754321111111  222


Q ss_pred             HHHH-HHHHhccCCeEEEEeec
Q 046049          237 LKKS-ILRDYLTDKKYFIVLDD  257 (261)
Q Consensus       237 ~l~~-~l~~~L~~kr~LlVlDD  257 (261)
                      +.+. .|...|.-+-=|||+|.
T Consensus       114 QrQRi~IARALal~P~liV~DE  135 (268)
T COG4608         114 QRQRIGIARALALNPKLIVADE  135 (268)
T ss_pred             hhhhHHHHHHHhhCCcEEEecC
Confidence            2222 35556666677777775

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.79  E-value=0.0029  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=17.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ++||.+||+.|+||||.+-++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLA   22 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLA   22 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHH
Confidence            3799999999999999554443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.002  Score=54.60  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          159 GPPRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      .+..+..+-++|++|.||||||..+.+..
T Consensus        48 r~e~lDHvLl~GPPGlGKTTLA~IIA~Em   76 (332)
T COG2255          48 RGEALDHVLLFGPPGLGKTTLAHIIANEL   76 (332)
T ss_pred             cCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence            34578899999999999999999999844

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.0077  Score=56.15  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             hhHhHHHHHHHHhcC--C--------CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          145 FERGREELFDLLIEG--P--------PRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~--------~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ++....++.+++..-  +        ...+=+-++|++|+|||.||+.+.+.-
T Consensus       195 ~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel  247 (802)
T KOG0733|consen  195 LDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL  247 (802)
T ss_pred             hHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence            788888887776542  1        234567799999999999999999943

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.77  E-value=0.0039  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.158  Sum_probs=19.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.++|++|+||||++..+..
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3788999999999999887765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.76  E-value=0.0013  Score=53.90  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=26.1

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+..++.....|.|+|++|+|||||++.+..
T Consensus         5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738          5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            4555566788999999999999999999875

>PRK08149 ATP synthase SpaL; Validated

Probab=96.76  E-value=0.0059  Score=55.37  Aligned_cols=90  Identities=11%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||.+.+......    +..+..   .+. ..-....+..+............  ...+.     
T Consensus       150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g---~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r  222 (428)
T PRK08149        150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIG---LIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR  222 (428)
T ss_pred             cCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEE---EEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence            3468899999999999999999874321    222223   333 23345566666655433211100  00010     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       ........+.+++  ++|+.||++||+
T Consensus       223 ~~a~~~a~tiAE~fr~~G~~Vll~~Dsl  250 (428)
T PRK08149        223 CNAALVATTVAEYFRDQGKRVVLFIDSM  250 (428)
T ss_pred             HhHHHHHHHHHHHHHHcCCCEEEEccch
Confidence             1122333455555  589999999997

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.76  E-value=0.0046  Score=53.29  Aligned_cols=25  Identities=8%  Similarity=-0.003  Sum_probs=21.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|.|..|+||||+|+.+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999986643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK03839 putative kinase; Provisional

Probab=96.75  E-value=0.0011  Score=53.04  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .|.|.|++|+||||+++.+.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999873

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.0018  Score=50.35  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=32.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCC
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS  225 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~  225 (261)
                      +|.|-|++|+||||+|+.+.++-..+            .    .+...++++|++..+..-
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~------------~----vsaG~iFR~~A~e~gmsl   46 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLK------------L----VSAGTIFREMARERGMSL   46 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCc------------e----eeccHHHHHHHHHcCCCH
Confidence            78999999999999999998743221            1    244567777777776543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.74  E-value=0.0034  Score=57.26  Aligned_cols=41  Identities=17%  Similarity=0.054  Sum_probs=29.7

Q ss_pred             hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+++|.+.+.-   .        -....-+.++|++|+|||++|+.+.+
T Consensus       188 l~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~  239 (438)
T PTZ00361        188 LEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN  239 (438)
T ss_pred             HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            66667766665521   1        02344577899999999999999998

>PTZ00035 Rad51 protein; Provisional

Probab=96.73  E-value=0.014  Score=51.49  Aligned_cols=101  Identities=10%  Similarity=0.043  Sum_probs=58.0

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c-ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F-YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-  228 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-  228 (261)
                      ++|.++=+.-.++-|+|++|+|||||+..+.-.....   . .=...+|+   .-...|++..+ ..+.++++...... 
T Consensus       109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyI---dtE~~f~~eri-~~ia~~~g~~~~~~l  184 (337)
T PTZ00035        109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYI---DTEGTFRPERI-VQIAERFGLDPEDVL  184 (337)
T ss_pred             HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEE---EccCCCCHHHH-HHHHHHhCCChHhHh
Confidence            3444443567899999999999999998875422211   1 11245688   77777887774 44455555432110 


Q ss_pred             ccc---CC-CHHHHHHHH---HHhc-cCCeEEEEeecC
Q 046049          229 VII---GE-DYQLKKSIL---RDYL-TDKKYFIVLDDV  258 (261)
Q Consensus       229 ~~~---~~-~~~~l~~~l---~~~L-~~kr~LlVlDDV  258 (261)
                      .++   .. +.+++...+   ...+ .++--|||+|-+
T Consensus       185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSi  222 (337)
T PTZ00035        185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSA  222 (337)
T ss_pred             hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence            000   11 344444443   3333 344568999976

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.73  E-value=0.013  Score=51.03  Aligned_cols=40  Identities=18%  Similarity=0.014  Sum_probs=31.5

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .++.++.+..++....  .+.+.++|++|+||||+++.+.+.
T Consensus        22 ~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~   61 (319)
T PRK00440         22 QEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE   61 (319)
T ss_pred             cHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence            6667777887775533  445799999999999999999773

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.73  E-value=0.0047  Score=55.75  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..++.++|++|+||||++..+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999987754

>PRK05439 pantothenate kinase; Provisional

Probab=96.72  E-value=0.012  Score=51.22  Aligned_cols=25  Identities=8%  Similarity=-0.020  Sum_probs=22.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|.|.+|+||||+|+.+..
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998866

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.009  Score=55.97  Aligned_cols=40  Identities=10%  Similarity=-0.033  Sum_probs=28.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|...+..+ .-.+.+-++|+.|+||||+|+.+.+
T Consensus        21 q~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk   60 (546)
T PRK14957         21 QQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAK   60 (546)
T ss_pred             cHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445555666666543 2345577899999999999998875

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.0082  Score=58.81  Aligned_cols=40  Identities=13%  Similarity=-0.048  Sum_probs=28.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|.+++..+. =.+.+-++|+.|+||||+|+.+.+
T Consensus        21 Qe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk   60 (944)
T PRK14949         21 QSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK   60 (944)
T ss_pred             cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444555666665432 234458999999999999999987

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.70  E-value=0.012  Score=52.80  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.++|+++|++|+||||++..+..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            457999999999999998887753

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.69  E-value=0.013  Score=52.99  Aligned_cols=107  Identities=10%  Similarity=0.052  Sum_probs=66.5

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      |+.+++.+.+++...  .+..+-+-|.|.+|.|||.+...++.+..-...=-+++.+.  |.| --....|+..|...+.
T Consensus       155 Re~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in--c~s-l~~~~aiF~kI~~~~~  231 (529)
T KOG2227|consen  155 RELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN--CTS-LTEASAIFKKIFSSLL  231 (529)
T ss_pred             hHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe--ecc-ccchHHHHHHHHHHHH
Confidence            899999999888653  24567788899999999999999988532211111334441  222 1245567777777662


Q ss_pred             CCCCCccccCCCHHHHHHHHHHhccCC--eEEEEeecC
Q 046049          223 PPSRVSVIIGEDYQLKKSILRDYLTDK--KYFIVLDDV  258 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDDV  258 (261)
                      .....    .....+.+..+.+...+.  .||+|||.+
T Consensus       232 q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEm  265 (529)
T KOG2227|consen  232 QDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEM  265 (529)
T ss_pred             HHhcC----CchhHHHHHHHHHHHhcccceEEEEechh
Confidence            22210    113345566666666543  599999964

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.68  E-value=0.0095  Score=54.25  Aligned_cols=23  Identities=26%  Similarity=0.174  Sum_probs=19.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..++.++|++|+||||++..+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999997766543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.68  E-value=0.01  Score=53.06  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVI  230 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~  230 (261)
                      ++-+.|..+=..-.++.|.|.+|+|||||+..+...  ....-...+|+   +..  .+...+... ...++.......-
T Consensus        70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYv---s~E--Es~~qi~~R-a~rlg~~~~~l~l  141 (372)
T cd01121          70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYV---SGE--ESPEQIKLR-ADRLGISTENLYL  141 (372)
T ss_pred             HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ECC--cCHHHHHHH-HHHcCCCcccEEE
Confidence            344444333344679999999999999999988653  22222355666   543  334443322 3455543321100


Q ss_pred             cCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049          231 IGE-DYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       231 ~~~-~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      ... +.+.+...+.+   .+--+||+|.+
T Consensus       142 ~~e~~le~I~~~i~~---~~~~lVVIDSI  167 (372)
T cd01121         142 LAETNLEDILASIEE---LKPDLVIIDSI  167 (372)
T ss_pred             EccCcHHHHHHHHHh---cCCcEEEEcch
Confidence            122 55555554432   35567888875

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.68  E-value=0.0032  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+|.+.|.-|+|||||++.+...
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK04040 adenylate kinase; Provisional

Probab=96.68  E-value=0.0015  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|+|++|+||||+++.+..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            36899999999999999998877

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.67  E-value=0.0047  Score=47.87  Aligned_cols=21  Identities=14%  Similarity=0.022  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|.|+|.+|+||||||+.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~   21 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEE   21 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998876

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=96.65  E-value=0.0047  Score=56.04  Aligned_cols=90  Identities=9%  Similarity=0.101  Sum_probs=51.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC-HHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD-FGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||++.+....    ..++.+.+   -+..... ..+++.+++..-.......  ...+.     
T Consensus       161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~---lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R  233 (444)
T PRK08972        161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVG---LVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMR  233 (444)
T ss_pred             CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEE---EEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHH
Confidence            34689999999999999999988632    12455555   5655433 3556666544322111100  00010     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++  +++..|+++||+
T Consensus       234 ~~a~~~A~tiAEyfrd~G~~VLl~~Dsl  261 (444)
T PRK08972        234 LKGCETATTIAEYFRDQGLNVLLLMDSL  261 (444)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence             1112222355555  589999999997

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.64  E-value=0.0064  Score=54.23  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.++.++|+.|+||||++.++..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999988865

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.63  E-value=0.018  Score=51.37  Aligned_cols=40  Identities=13%  Similarity=-0.087  Sum_probs=29.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.+...+..+ .-.+.+-++|+.|+||||+|+.+.+
T Consensus        21 q~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         21 QKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             hHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHH
Confidence            444555566666543 2345678999999999999998876

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.62  E-value=0.0016  Score=51.87  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|+|++|+|||||++.+..
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.62  E-value=0.015  Score=53.66  Aligned_cols=38  Identities=11%  Similarity=-0.014  Sum_probs=26.6

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....|...+..+ .-.+.+-++|++|+||||+|+.+.+
T Consensus        21 ~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~   58 (472)
T PRK14962         21 HVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAK   58 (472)
T ss_pred             HHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3344455555433 2235678999999999999999866

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.61  E-value=0.003  Score=57.03  Aligned_cols=25  Identities=16%  Similarity=0.042  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+-+.++|++|+|||+||+.+.+.
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~  202 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHH  202 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            3567889999999999999999883

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.61  E-value=0.0017  Score=51.75  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|+|+.|+|||||++.+..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999988

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.61  E-value=0.0091  Score=50.42  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.++.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999999986

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.60  E-value=0.009  Score=55.58  Aligned_cols=41  Identities=20%  Similarity=0.008  Sum_probs=29.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -+..++.|..++..+. -.+.+.++|++|+||||+|+.+.+.
T Consensus        19 q~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~   59 (504)
T PRK14963         19 QEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA   59 (504)
T ss_pred             hHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444555666665432 3456799999999999999988763

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.59  E-value=0.007  Score=59.93  Aligned_cols=39  Identities=10%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+.++..+++.|.....  .-+-++|++|+||||+|..+..
T Consensus       183 r~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        183 RDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             CHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence            99999999999976542  3344889999999999998876

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=96.59  E-value=0.0085  Score=54.58  Aligned_cols=90  Identities=13%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCC-------CCCCccccCC-
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP-------PSRVSVIIGE-  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~-------~~~~~~~~~~-  233 (261)
                      .-..++|+|..|+|||||++.+.....   .....++.   .-...-+...+....+.....       +.+++ .... 
T Consensus       164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~l---iGergrev~e~~~~~l~~~r~rtI~vV~qsd~~-~~~r~  236 (450)
T PRK06002        164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIAL---VGERGREVREFLEDTLADNLKKAVAVVATSDES-PMMRR  236 (450)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeee---cccCCccHHHHhHHHHHHhhCCeEEEEEcCCCC-HHHHH
Confidence            346899999999999999998876321   22233433   222334444444444433211       11100 0000 


Q ss_pred             CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 ~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      -.....-.+.+++  +++..|+++||+
T Consensus       237 ~~~~~a~~iAEyfrd~G~~Vll~~Dsl  263 (450)
T PRK06002        237 LAPLTATAIAEYFRDRGENVLLIVDSV  263 (450)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence            1122223345555  489999999997

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.58  E-value=0.016  Score=48.47  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHH
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDI  217 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i  217 (261)
                      |-++|.++=+.-+++.|.|.+|+|||+||..+... .. ..-...+||   +...  ++..+.+.+
T Consensus        10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyv---s~ee--~~~~i~~~~   68 (237)
T TIGR03877        10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYV---ALEE--HPVQVRRNM   68 (237)
T ss_pred             HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEE---EeeC--CHHHHHHHH
Confidence            33444444356789999999999999999875431 12 223466777   5543  455565553

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.58  E-value=0.0015  Score=49.98  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|.|+|++|+||||+|+.+..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~   21 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAK   21 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.58  E-value=0.0058  Score=52.65  Aligned_cols=22  Identities=14%  Similarity=0.019  Sum_probs=18.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+.++|++|+||||+|+.+..
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~   80 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQ   80 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999976654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.57  E-value=0.0034  Score=52.34  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|+|++|+||||+|+.+..
T Consensus         8 rIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998866

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.003  Score=52.39  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|..|+|||||++.+.-
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            346899999999999999999853

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0065  Score=57.57  Aligned_cols=25  Identities=12%  Similarity=0.078  Sum_probs=21.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      .+-|-|.|+.|+|||+||+.+++..
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~  455 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYY  455 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHh
Confidence            4568899999999999999999843

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.56  E-value=0.0076  Score=59.74  Aligned_cols=39  Identities=10%  Similarity=0.079  Sum_probs=31.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+.++..+++.|.....  .-+.++|++|+|||++|..+..
T Consensus       178 r~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~  216 (852)
T TIGR03346       178 RDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ  216 (852)
T ss_pred             cHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence            99999999999876542  2334799999999999998876

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00181 cbbX CbbX; Provisional

Probab=96.54  E-value=0.0071  Score=52.21  Aligned_cols=23  Identities=13%  Similarity=-0.012  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.++|++|+||||+|+.+.+
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~   81 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMAD   81 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999999966

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.54  E-value=0.0068  Score=56.19  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+|+|+|++|+||||++..+..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999877754

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.54  E-value=0.0016  Score=52.56  Aligned_cols=22  Identities=18%  Similarity=-0.025  Sum_probs=20.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|+|.|.+|+||||||+.+...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~   22 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRI   22 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.53  E-value=0.0035  Score=58.74  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=26.2

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.....+..+|+|.|+.|+||||||+.+..
T Consensus        56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag   87 (656)
T PLN02318         56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN   87 (656)
T ss_pred             HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence            33443455689999999999999999999976

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.53  E-value=0.002  Score=50.75  Aligned_cols=24  Identities=4%  Similarity=-0.003  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|.++|++|+||||+|+.+...
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~   27 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKR   27 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999873

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.53  E-value=0.0048  Score=52.71  Aligned_cols=22  Identities=9%  Similarity=-0.093  Sum_probs=17.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|.|+|.+|+||||+|+.+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~   23 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKK   23 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Confidence            4688999999999999998876

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK00625 shikimate kinase; Provisional

Probab=96.53  E-value=0.0018  Score=51.57  Aligned_cols=21  Identities=10%  Similarity=-0.012  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.++||+|+||||+++.+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.53  E-value=0.0023  Score=50.81  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++|+|..|+|||||++.+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHH
Confidence            467999999999999999998886

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.53  E-value=0.0022  Score=49.06  Aligned_cols=22  Identities=5%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|.|+|+.|+|||||++.+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999873

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.52  E-value=0.0017  Score=52.00  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|.+|+||||||+.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~   21 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSN   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.52  E-value=0.0024  Score=49.03  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=24.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcc-cccceeeEE
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVK-FYFDCHAWV  199 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv  199 (261)
                      ++|.|+|..|+|||||++.+.+.  .. ..+...+..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik   35 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIK   35 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEE
Confidence            48999999999999999999883  33 344444444

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.51  E-value=0.0017  Score=51.91  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ||.|+|++|+||||+|+.+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.49  E-value=0.0045  Score=52.61  Aligned_cols=25  Identities=12%  Similarity=-0.065  Sum_probs=21.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +....+.++|++|+||||+|+.+.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHH
Confidence            3456788999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.49  E-value=0.0021  Score=52.41  Aligned_cols=24  Identities=4%  Similarity=0.063  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+|+|+|+.|+|||||++.+...
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999873

>PRK09087 hypothetical protein; Validated

Probab=96.48  E-value=0.011  Score=49.27  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+.+.|+|+.|+|||+|++.+...
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999998874

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.48  E-value=0.018  Score=48.09  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             hhHhHHHHHHHH---hcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLL---IEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L---~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.+++.|++-.   ..+ ....-+-++|..|+|||+|++.+.+
T Consensus        32 ie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   32 IERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             HHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHH
Confidence            666666666532   222 2356667799999999999999987

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=96.46  E-value=0.01  Score=50.56  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCc--ccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC----
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHV--KFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE----  233 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~----  233 (261)
                      -.-++|.|-.|+|||+|+..+.++...  +.+-+.++++   -+.+. ....+++.++.+.-.......  ...+.    
T Consensus        69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~---~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~  145 (276)
T cd01135          69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA---AMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE  145 (276)
T ss_pred             CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE---EeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence            467899999999999999988775331  2234677888   78765 445666666655422211100  00011    


Q ss_pred             --CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          234 --DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       234 --~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                        -.....-.+.++++   +++.|+++||+
T Consensus       146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~l  175 (276)
T cd01135         146 RIITPRMALTTAEYLAYEKGKHVLVILTDM  175 (276)
T ss_pred             HHHHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence              11222233566663   68999999997

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.46  E-value=0.014  Score=48.65  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=56.6

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc-----
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS-----  228 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~-----  228 (261)
                      ++|..+=+.-+++.|.|.+|+|||||+..+... ..+. =..+.|+   +...+  +..+++++ .+++....+.     
T Consensus        16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~---~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~   87 (234)
T PRK06067         16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVI---TTENT--SKSYLKQM-ESVKIDISDFFLWGY   87 (234)
T ss_pred             HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEE---EcCCC--HHHHHHHH-HHCCCChhHHHhCCC
Confidence            344334356789999999999999999987432 1222 2356777   66544  45555553 3343221100     


Q ss_pred             --------cc--cCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          229 --------VI--IGE-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       229 --------~~--~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                              ..  ... +.+.+...+...+.. +.=++|+|.+
T Consensus        88 l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~  129 (234)
T PRK06067         88 LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL  129 (234)
T ss_pred             ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence                    00  112 456677777777753 4457888864

>CHL00176 ftsH cell division protein; Validated

Probab=96.46  E-value=0.0088  Score=57.18  Aligned_cols=42  Identities=17%  Similarity=0.069  Sum_probs=29.6

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..++..+++..|....       ...+-+.++|++|+|||+||+.+.+.
T Consensus       191 ~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e  239 (638)
T CHL00176        191 AKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE  239 (638)
T ss_pred             HHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4455566666654321       12446889999999999999999873

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.45  E-value=0.0028  Score=50.31  Aligned_cols=24  Identities=21%  Similarity=-0.015  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|+|++|+||||+|+.+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~   26 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAE   26 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999998876

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.44  E-value=0.027  Score=48.18  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.++|.++|++|+||||++..+..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3568999999999999997776643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.44  E-value=0.0026  Score=51.18  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .++.|+|+.|+|||||++.+...
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999999774

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.43  E-value=0.022  Score=51.17  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.++|+.|+||||.+..+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999998776654

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.42  E-value=0.0041  Score=58.09  Aligned_cols=41  Identities=12%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             hhHhHHHHHHHHh----cCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLI----EGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~----~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +++.++.|++.|.    .-+..-+++.++||+|+||||||+.+.+
T Consensus        81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            8899999999883    2234568999999999999999999977

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=96.42  E-value=0.0081  Score=55.00  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      +-.-++|+|.+|+|||||+..+.++.. +.+-++.+++   -+... -...+++.++...-.......  ...+.     
T Consensus       142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~---liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R  217 (461)
T PRK12597        142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFA---GVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR  217 (461)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEE---cCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence            346789999999999999987776432 2356777888   77654 345666666654322211100  00000     


Q ss_pred             -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL---TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L---~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++   +++.+|+++||+
T Consensus       218 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl  246 (461)
T PRK12597        218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNI  246 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence             2223334466676   378999999997

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.42  E-value=0.014  Score=51.13  Aligned_cols=89  Identities=10%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC------
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE------  233 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~------  233 (261)
                      -..++|+|..|+|||||.+.+.....  .  ++.+..   .+. ..-....+....+..-.......  ...+.      
T Consensus        69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~---~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~  141 (326)
T cd01136          69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIA---LIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV  141 (326)
T ss_pred             CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEE---EEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence            46789999999999999998887422  1  233333   333 23345555555544322111100  00000      


Q ss_pred             CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 ~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      -.....-.+.+++  ++|.+|+++||+
T Consensus       142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsl  168 (326)
T cd01136         142 KAAYTATAIAEYFRDQGKDVLLLMDSL  168 (326)
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeccc
Confidence            1122233345555  589999999996

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.42  E-value=0.0098  Score=51.92  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=52.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~  239 (261)
                      +.-+++-|+|+.|+||||||..+..  .....-..++||   ...+.+++.     .+.+++.+.+.---. +...++..
T Consensus        51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~I---D~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al  120 (322)
T PF00154_consen   51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFI---DAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQAL  120 (322)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEE---ESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHH
T ss_pred             ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEe---cCcccchhh-----HHHhcCccccceEEecCCcHHHHH
Confidence            4457999999999999999998876  333444677899   877777753     345555544321000 11445555


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      +.+...++ +..-++|+|-|
T Consensus       121 ~~~e~lirsg~~~lVVvDSv  140 (322)
T PF00154_consen  121 WIAEQLIRSGAVDLVVVDSV  140 (322)
T ss_dssp             HHHHHHHHTTSESEEEEE-C
T ss_pred             HHHHHHhhcccccEEEEecC
Confidence            66666664 44568899976

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK12678 transcription termination factor Rho; Provisional

Probab=96.41  E-value=0.0046  Score=57.65  Aligned_cols=89  Identities=15%  Similarity=0.005  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC-HHHHHHHHHHHhCCC----CCCccccCC-CHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD-FGKILDDIIKSVMPP----SRVSVIIGE-DYQ  236 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~----~~~~~~~~~-~~~  236 (261)
                      -.-..|+|++|+|||||++.|.+.. ..++-++.++|.  -|...+. +.++    -+.+...    ..+...... ...
T Consensus       416 GQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivv--LIgERpeEVtdm----~rsVkgeVVasT~D~p~~~~~~~a  488 (672)
T PRK12678        416 GQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVV--LVDERPEEVTDM----QRSVKGEVIASTFDRPPSDHTTVA  488 (672)
T ss_pred             CCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEE--EEeCchhhHHHH----HHhccceEEEECCCCCHHHHHHHH
Confidence            4567899999999999999988821 122334554441  4444332 2233    3333211    110000000 223


Q ss_pred             HHHHHHHHhc--cCCeEEEEeecC
Q 046049          237 LKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       237 ~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      .+.-.+.++|  .++.+||+||++
T Consensus       489 ~~ai~~Ae~fre~G~dVlillDSl  512 (672)
T PRK12678        489 ELAIERAKRLVELGKDVVVLLDSI  512 (672)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeCc
Confidence            3444456666  689999999986

>PRK06217 hypothetical protein; Validated

Probab=96.41  E-value=0.0024  Score=51.24  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..|.|.|++|+||||||+.+...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999874

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=96.40  E-value=0.011  Score=53.86  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      +-..++|+|..|+|||||++.+.+...    -+..+.+   -+.... ...++..+.+..-+......  ...+.     
T Consensus       157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~---~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r  229 (442)
T PRK08927        157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIG---LIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR  229 (442)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEE---EEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHH
Confidence            457889999999999999999987432    1344445   555443 33455554444322111100  00011     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++  +++.+|+++||+
T Consensus       230 ~~a~~~a~tiAEyfrd~G~~Vll~~Dsl  257 (442)
T PRK08927        230 RQAAYLTLAIAEYFRDQGKDVLCLMDSV  257 (442)
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence             1122233355666  589999999997

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=96.39  E-value=0.017  Score=56.20  Aligned_cols=95  Identities=20%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             HHHh-cCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccC
Q 046049          154 DLLI-EGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIG  232 (261)
Q Consensus       154 ~~L~-~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~  232 (261)
                      .+|- .+=+.-+++-|.|++|+|||||+..+.-.  ....=...+|+   .....+++     ..+++++.+.....-..
T Consensus        50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yI---d~E~t~~~-----~~A~~lGvDl~~llv~~  119 (790)
T PRK09519         50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFI---DAEHALDP-----DYAKKLGVDTDSLLVSQ  119 (790)
T ss_pred             HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---CCccchhH-----HHHHHcCCChhHeEEec
Confidence            3443 23355788999999999999999765442  11222456899   77777774     36677776543211111


Q ss_pred             C-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          233 E-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       233 ~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                      . ..++....+...++. +--|||+|-|
T Consensus       120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI  147 (790)
T PRK09519        120 PDTGEQALEIADMLIRSGALDIVVIDSV  147 (790)
T ss_pred             CCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence            2 455566666666643 5567899965

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.39  E-value=0.0029  Score=47.54  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=18.5

Q ss_pred             EEEEeCCCccHHHHHHHHHcCCCcccccc
Q 046049          166 VAILDGIGFDMTAFAADAFNNNHVKFYFD  194 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~  194 (261)
                      +-|+|.+|+||||+|+.+..  .+...|.
T Consensus         2 vLleg~PG~GKT~la~~lA~--~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALAR--SLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence            67899999999999999988  5556664

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.38  E-value=0.031  Score=49.27  Aligned_cols=24  Identities=17%  Similarity=0.058  Sum_probs=20.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|.++|++|+||||++..+..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999997666654

>PRK13947 shikimate kinase; Provisional

Probab=96.38  E-value=0.0025  Score=50.29  Aligned_cols=21  Identities=10%  Similarity=0.135  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|+||+|+||||+|+.+.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~   23 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVAT   23 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            388999999999999999877

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.36  E-value=0.0025  Score=49.16  Aligned_cols=22  Identities=5%  Similarity=0.145  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|.+.|++|+||||+|+.+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhh
Confidence            4778999999999999998774

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.36  E-value=0.0034  Score=51.02  Aligned_cols=25  Identities=12%  Similarity=-0.071  Sum_probs=22.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+|.|+|++|+||||||+.+..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~   46 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEE   46 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998876

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.35  E-value=0.0037  Score=61.73  Aligned_cols=39  Identities=13%  Similarity=0.116  Sum_probs=32.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+.++..+++.|....  ..-+-++|++|+||||+|..+..
T Consensus       192 r~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       192 RDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             CHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence            9999999999887654  22344899999999999998876

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.35  E-value=0.0043  Score=52.68  Aligned_cols=93  Identities=22%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC----------
Q 046049          158 EGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV----------  227 (261)
Q Consensus       158 ~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~----------  227 (261)
                      .+=+.-+++.|.|.+|+|||+++.+...  ....+...++||   +...+  ...+++.+.+ ++.....          
T Consensus        18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyv---s~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~   89 (260)
T COG0467          18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYV---STEES--PEELLENARS-FGWDLEVYIEKGKLAIL   89 (260)
T ss_pred             CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEE---EecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEE
Confidence            3335679999999999999999988776  444558889999   76654  4445544433 3322110          


Q ss_pred             ------cc----ccC-C-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          228 ------SV----IIG-E-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       228 ------~~----~~~-~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                            ..    ... . +...+...|.+.... +..-+|+|.+
T Consensus        90 d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi  133 (260)
T COG0467          90 DAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSI  133 (260)
T ss_pred             EccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                  00    011 2 566677777776643 3556677765

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.34  E-value=0.027  Score=52.54  Aligned_cols=40  Identities=10%  Similarity=-0.123  Sum_probs=29.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        21 q~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk   60 (509)
T PRK14958         21 QAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK   60 (509)
T ss_pred             CHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            4555667777775542 234578999999999999998865

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.34  E-value=0.0037  Score=50.07  Aligned_cols=35  Identities=9%  Similarity=0.003  Sum_probs=28.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      .++|.|+|+.|+|||||++.+..  ....+|...++.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~   36 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH   36 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence            46889999999999999999988  555677655555

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.34  E-value=0.0035  Score=46.04  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             EEEEeCCCccHHHHHHHHHcCC
Q 046049          166 VAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      |.|+|..|+|||||.+.+.+..
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999988654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.33  E-value=0.021  Score=51.02  Aligned_cols=24  Identities=8%  Similarity=0.076  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+++++|+.|+||||++..+..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998877754

>PRK13949 shikimate kinase; Provisional

Probab=96.32  E-value=0.0029  Score=50.16  Aligned_cols=21  Identities=10%  Similarity=0.108  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|+||+|+||||+++.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998876

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.32  E-value=0.013  Score=55.28  Aligned_cols=23  Identities=13%  Similarity=0.060  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.|+|..|+|||.|++.+.+
T Consensus       314 ~NpL~LyG~sGsGKTHLL~AIa~  336 (617)
T PRK14086        314 YNPLFIYGESGLGKTHLLHAIGH  336 (617)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999998

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.31  E-value=0.0054  Score=49.44  Aligned_cols=25  Identities=8%  Similarity=0.022  Sum_probs=22.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +..+|.|+|++|+|||||++.+...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3578999999999999999999873

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.31  E-value=0.0044  Score=55.23  Aligned_cols=41  Identities=27%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHH-HHHHHHc
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTA-FAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTt-La~~v~~  185 (261)
                      ..+....+..++.++  -.+-++|++||+.|+|||| ||+....
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar  226 (407)
T COG1419         183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR  226 (407)
T ss_pred             HHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHH
Confidence            444444555555443  0236899999999999998 8887654

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.30  E-value=0.029  Score=53.46  Aligned_cols=40  Identities=15%  Similarity=-0.012  Sum_probs=30.5

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.....|..++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        20 Qe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK   59 (702)
T PRK14960         20 QNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK   59 (702)
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            5555677777776543 246778999999999999998865

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.30  E-value=0.0034  Score=47.72  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=28.6

Q ss_pred             EEEEeCCCccHHHHHHHHHcCCCcccccceee-EEecccccCCCCHHHHHH
Q 046049          166 VAILDGIGFDMTAFAADAFNNNHVKFYFDCHA-WVKNLSVSIAYDFGKILD  215 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~vs~~~~~~~il~  215 (261)
                      |-++|++|+|||+||+.+..  ..    .... -+   .++...+..+++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i---~~~~~~~~~dl~g   43 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRI---NCSSDTTEEDLIG   43 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HH----TCEEEEE---E-TTTSTHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hh----hcceEEE---Eecccccccccee
Confidence            56899999999999998887  22    2222 23   6677777776654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.29  E-value=0.004  Score=45.38  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      -..++|+|+.|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK04296 thymidine kinase; Provisional

Probab=96.29  E-value=0.0057  Score=49.46  Aligned_cols=22  Identities=5%  Similarity=-0.096  Sum_probs=18.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|.|+.|.||||++.....
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~   24 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAY   24 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
Confidence            4778899999999998877665

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.28  E-value=0.037  Score=53.66  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.||+++|+.|+||||.+.++..
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHh
Confidence            47999999999999997777654

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0093  Score=51.60  Aligned_cols=29  Identities=7%  Similarity=0.058  Sum_probs=24.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVK  190 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~  190 (261)
                      .-++|-+.||+|.|||+|.+.+.+.-.++
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            35789999999999999999999855443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.27  E-value=0.0034  Score=52.30  Aligned_cols=23  Identities=22%  Similarity=0.096  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..++|+|++|+|||||.+.+.-
T Consensus        29 GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999853

>PRK13975 thymidylate kinase; Provisional

Probab=96.26  E-value=0.0037  Score=50.51  Aligned_cols=22  Identities=14%  Similarity=-0.121  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|.|.|+.|+||||+++.+..
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~   24 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAE   24 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.26  E-value=0.0082  Score=48.22  Aligned_cols=21  Identities=10%  Similarity=-0.092  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|+.|+||||+++.+.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~   22 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAE   22 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999977

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.26  E-value=0.004  Score=47.10  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||.+.+..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g   33 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAG   33 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEEccCCCccccceeeecc
Confidence            35899999999999999999876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.26  E-value=0.0034  Score=48.49  Aligned_cols=20  Identities=10%  Similarity=0.124  Sum_probs=18.6

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.++|++|+||||+|+.+..
T Consensus         2 i~l~G~~GsGKstla~~la~   21 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAK   21 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999976

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.25  E-value=0.039  Score=53.38  Aligned_cols=40  Identities=15%  Similarity=-0.031  Sum_probs=29.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus        21 Qe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK   60 (830)
T PRK07003         21 QEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK   60 (830)
T ss_pred             cHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            5555667777775543 245556999999999999987765

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.25  E-value=0.0079  Score=50.58  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...++++.|.....+..+|+|.|++|+||+||.-.+..
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence            45566776766556789999999999999999887754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.25  E-value=0.0035  Score=49.89  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=20.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++|.+.|++|+||||+|+.+...
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~   25 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSV   25 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999988763

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK04328 hypothetical protein; Provisional

Probab=96.25  E-value=0.02  Score=48.36  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI  206 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~  206 (261)
                      ++|..+=+.-+++.|.|.+|+|||+|+..+... ..+. -...+|+   +...
T Consensus        14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyi---s~ee   61 (249)
T PRK04328         14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYV---ALEE   61 (249)
T ss_pred             HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEE---EeeC
Confidence            344333345789999999999999999875442 2222 3456777   6544

>PRK14530 adenylate kinase; Provisional

Probab=96.25  E-value=0.0034  Score=51.74  Aligned_cols=21  Identities=10%  Similarity=0.104  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|+|++|+||||+|+.+..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=96.24  E-value=0.0096  Score=54.28  Aligned_cols=90  Identities=10%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||++.+....    ..+..+..   .+... .....+...+...-.......  ...+.     
T Consensus       167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g---~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r  239 (451)
T PRK05688        167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVG---LIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMR  239 (451)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEE---EeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHH
Confidence            34679999999999999999987632    12333333   33332 344555555544432221100  00000     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       ........+.+++  ++++.||++||+
T Consensus       240 ~~a~~~a~aiAEyfrd~G~~VLl~~Dsl  267 (451)
T PRK05688        240 LRAAMYCTRIAEYFRDKGKNVLLLMDSL  267 (451)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEecch
Confidence             1122223355555  589999999997

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.24  E-value=0.0083  Score=55.82  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +=+-++|++|+|||+||+.+.+.
T Consensus        89 ~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999999874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.23  E-value=0.0034  Score=50.23  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|.|++|+||||+|+.+.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.23  E-value=0.0049  Score=50.16  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|+|+.|+||||++..+..
T Consensus         2 GlilI~GptGSGKTTll~~ll~   23 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID   23 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999987765

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.23  E-value=0.046  Score=45.29  Aligned_cols=43  Identities=28%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             HHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          155 LLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       155 ~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      +|..+=+.-..+.|.|.+|+|||||+..+... ..+ .-...+|+
T Consensus        12 ~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~i   54 (229)
T TIGR03881        12 LLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYV   54 (229)
T ss_pred             hhcCCCcCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEE
Confidence            34333245689999999999999999876432 111 22356777

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.23  E-value=0.018  Score=48.92  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..-++.+..++..+    .-+-+.|++|+|||+||+.+..
T Consensus         7 ~~~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~   43 (262)
T TIGR02640         7 VKRVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR   43 (262)
T ss_pred             HHHHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence            566667777777543    3455899999999999999986

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.23  E-value=0.033  Score=51.10  Aligned_cols=97  Identities=19%  Similarity=0.110  Sum_probs=52.7

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVI  230 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~  230 (261)
                      ++-++|..+=..-.++.|.|.+|+|||||+..+.....  .+=...+|+   +...  +...+... ++.++.......-
T Consensus        68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYv---s~Ee--s~~qi~~r-a~rlg~~~~~l~~  139 (446)
T PRK11823         68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYV---SGEE--SASQIKLR-AERLGLPSDNLYL  139 (446)
T ss_pred             HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEE---Eccc--cHHHHHHH-HHHcCCChhcEEE
Confidence            34444443334467999999999999999988866321  111345666   5433  34444333 4455543221101


Q ss_pred             cCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049          231 IGE-DYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       231 ~~~-~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      ... +.+.+...+.+   .+-=+||+|.+
T Consensus       140 ~~e~~l~~i~~~i~~---~~~~lVVIDSI  165 (446)
T PRK11823        140 LAETNLEAILATIEE---EKPDLVVIDSI  165 (446)
T ss_pred             eCCCCHHHHHHHHHh---hCCCEEEEech
Confidence            112 55555554433   24457888865

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.23  E-value=0.0029  Score=49.62  Aligned_cols=21  Identities=10%  Similarity=0.139  Sum_probs=18.4

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|+|++|+||||+|+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999998763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.21  E-value=0.025  Score=51.27  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++++|+.|+||||+..++..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999998876643

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.21  E-value=0.0027  Score=46.33  Aligned_cols=20  Identities=15%  Similarity=0.198  Sum_probs=17.2

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |-|+|++|+|||+||+.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~   20 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAK   20 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            45899999999999998654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.20  E-value=0.009  Score=52.52  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3455555544345678999999999999999998755

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.20  E-value=0.032  Score=50.65  Aligned_cols=40  Identities=18%  Similarity=0.108  Sum_probs=28.2

Q ss_pred             hhHhHHHHHHHHhcC-------CCCeEEEEEEeCCCccHHHHHHHHH
Q 046049          145 FERGREELFDLLIEG-------PPRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..--.++|.++|...       .....+|.++|++|+||||++..+.
T Consensus        75 ~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425        75 QHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             HHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            444455566655422       1246899999999999999887774

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=96.20  E-value=0.017  Score=52.50  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-..++|+|..|+|||||++.+...
T Consensus       156 ~Gq~~~i~G~sG~GKStLl~~i~~~  180 (434)
T PRK08472        156 KGQKLGIFAGSGVGKSTLMGMIVKG  180 (434)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3468999999999999999999874

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=96.20  E-value=0.008  Score=54.71  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-..++|+|..|+|||||.+.+...
T Consensus       174 ~Gqri~I~G~sG~GKTTLL~~Ia~~  198 (455)
T PRK07960        174 RGQRMGLFAGSGVGKSVLLGMMARY  198 (455)
T ss_pred             CCcEEEEECCCCCCccHHHHHHhCC
Confidence            3578999999999999999988873

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.19  E-value=0.0051  Score=47.99  Aligned_cols=23  Identities=17%  Similarity=-0.064  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|-|.|.+|+||||||+.+..
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~   24 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALER   24 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999987

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=96.17  E-value=0.013  Score=52.97  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||.+.+.+...  .  ++.+.+   .+.... ...++...+...-.......  ...+.     
T Consensus       136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~--~--~~~vi~---~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r  208 (411)
T TIGR03496       136 RGQRMGIFAGSGVGKSTLLGMMARYTE--A--DVVVVG---LIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMR  208 (411)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhcCCC--C--CEEEEE---EEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHH
Confidence            346799999999999999998887322  1  233333   444432 33444444433311111000  00010     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++  ++++.|+++||+
T Consensus       209 ~~a~~~a~tiAEyfr~~G~~Vll~~Dsl  236 (411)
T TIGR03496       209 LRAAFYATAIAEYFRDQGKDVLLLMDSL  236 (411)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence             1112223345555  589999999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.17  E-value=0.015  Score=56.63  Aligned_cols=39  Identities=18%  Similarity=0.097  Sum_probs=31.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+.++..+++.|..... .. +-++|++|+|||++|+.+..
T Consensus       191 R~~ei~~~i~iL~r~~~-~n-~LLvGppGvGKT~lae~la~  229 (758)
T PRK11034        191 REKELERAIQVLCRRRK-NN-PLLVGESGVGKTAIAEGLAW  229 (758)
T ss_pred             CCHHHHHHHHHHhccCC-CC-eEEECCCCCCHHHHHHHHHH
Confidence            89999999998876432 22 34799999999999999876

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.15  E-value=0.022  Score=52.85  Aligned_cols=102  Identities=13%  Similarity=0.026  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS  228 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~  228 (261)
                      ...+-++|..+=..-+++.|.|++|+|||||+.+.....  ..+=+..+++     |-.-+...+...+ ++++......
T Consensus       249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~-----s~eEs~~~i~~~~-~~lg~~~~~~  320 (484)
T TIGR02655       249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILF-----AYEESRAQLLRNA-YSWGIDFEEM  320 (484)
T ss_pred             hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEE-----EeeCCHHHHHHHH-HHcCCChHHH
Confidence            445555665554567899999999999999998776521  1222344555     3444566666664 5555432210


Q ss_pred             ----------cccCC-CHHHHHHHHHHhccC-CeEEEEeecC
Q 046049          229 ----------VIIGE-DYQLKKSILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       229 ----------~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDV  258 (261)
                                ..... ..++....+.+.+.. +.-++|+|.+
T Consensus       321 ~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi  362 (484)
T TIGR02655       321 EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL  362 (484)
T ss_pred             hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence                      00112 456677777777753 3456788864

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.15  E-value=0.0039  Score=49.08  Aligned_cols=20  Identities=20%  Similarity=0.114  Sum_probs=18.4

Q ss_pred             EEEEEeCCCccHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .|+|.|.+|+||||+++.+-
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            68999999999999999875

>PRK09099 type III secretion system ATPase; Provisional

Probab=96.14  E-value=0.018  Score=52.55  Aligned_cols=90  Identities=8%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      +-..++|.|..|+|||||.+.+......    +..+.+   -+. +.....++...+...-.......  ...+.     
T Consensus       162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~---~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r  234 (441)
T PRK09099        162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIA---LIGERGREVREFIELILGEDGMARSVVVCATSDRSSIER  234 (441)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEE---EEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHH
Confidence            4578999999999999999999874321    222222   233 23344444455443322111100  00010     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++  +++..|+++||+
T Consensus       235 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsl  262 (441)
T PRK09099        235 AKAAYVATAIAEYFRDRGLRVLLMMDSL  262 (441)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence             1122233355566  489999999997

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.14  E-value=0.0042  Score=50.51  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+|+|-||-|+||||||+.+.++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~   27 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEH   27 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHH
Confidence            578999999999999999998773

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.14  E-value=0.034  Score=44.75  Aligned_cols=22  Identities=18%  Similarity=-0.106  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|+|.|..|+||||+++.+.+
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~   25 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKK   25 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999886

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=96.14  E-value=0.011  Score=53.95  Aligned_cols=93  Identities=10%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-.-++|.|.+|+|||+|+..+..+.. +.+-++++++   -+.... ...++++++...-.......  ...+.     
T Consensus       137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~---~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r  212 (449)
T TIGR03305       137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFC---GIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR  212 (449)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEE---EeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH
Confidence            346789999999999999988766422 2334677888   776554 34566666654322111100  00010     


Q ss_pred             -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                       -.....-.+.++++   ++..|+++||+
T Consensus       213 ~~~~~~a~tiAEyfrd~~G~~VLl~~Dsl  241 (449)
T TIGR03305       213 FRVGHTALTMAEYFRDDEKQDVLLLIDNI  241 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEecCh
Confidence             12223344667764   58999999997

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK05922 type III secretion system ATPase; Validated

Probab=96.13  E-value=0.023  Score=51.68  Aligned_cols=89  Identities=4%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC------
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE------  233 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~------  233 (261)
                      -..++|+|..|+|||||.+.+....    +.++.+.+   .++. .......+.+............  ...+.      
T Consensus       157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~---liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~  229 (434)
T PRK05922        157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIA---LIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV  229 (434)
T ss_pred             CcEEEEECCCCCChHHHHHHHhccC----CCCceEEE---EeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence            4578999999999999999998732    12333333   2222 2233445544443332221110  00010      


Q ss_pred             CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 ~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      -.....-.+.+++  +++++|+++||+
T Consensus       230 ~a~~~a~tiAEyfrd~G~~VLl~~Dsl  256 (434)
T PRK05922        230 IAGRAAMTIAEYFRDQGHRVLFIMDSL  256 (434)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence            1122233355666  589999999997

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.12  E-value=0.0051  Score=50.35  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=22.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++++|+++|+.|+|||||...+..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~   44 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLID   44 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999998876

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.12  E-value=0.0077  Score=49.68  Aligned_cols=88  Identities=14%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCC--ccccCCC------
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRV--SVIIGED------  234 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~--~~~~~~~------  234 (261)
                      .-++|+|.+|+|||+|+..+.++..    -++.+++   .+.+. ....++.+++...-..+...  ....+..      
T Consensus        16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~---~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~   88 (215)
T PF00006_consen   16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYA---LIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR   88 (215)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEE---EESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred             CEEEEEcCcccccchhhHHHHhccc----ccceeee---eccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence            5789999999999999998877432    2233666   66654 34455666654331111100  0000100      


Q ss_pred             HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 ~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      .....-.+.+++  .+|..|+++||+
T Consensus        89 ~~~~a~t~AEyfrd~G~dVlli~Dsl  114 (215)
T PF00006_consen   89 APYTALTIAEYFRDQGKDVLLIIDSL  114 (215)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred             hhccchhhhHHHhhcCCceeehhhhh
Confidence            111112233444  689999999996

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=96.11  E-value=0.024  Score=51.52  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC-C---
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE-D---  234 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~---  234 (261)
                      .-..++|+|..|+|||||.+.+.+..    +.+..+++   .+.. .....+++.+....-.......  ...+. -   
T Consensus       154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~---~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r  226 (433)
T PRK07594        154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLV---LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226 (433)
T ss_pred             CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEE---EECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHH
Confidence            45689999999999999999988732    23444555   4443 3334455554432110000000  00011 1   


Q ss_pred             --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 --YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 --~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                        .....-.+.+++  +++++||++||+
T Consensus       227 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsl  254 (433)
T PRK07594        227 VRALFVATTIAEFFRDNGKRVVLLADSL  254 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence              111233355666  589999999997

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.11  E-value=0.049  Score=51.09  Aligned_cols=40  Identities=15%  Similarity=-0.029  Sum_probs=28.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|..++..+. -.+.+-++|+.|+||||+|+.+..
T Consensus        21 q~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk   60 (527)
T PRK14969         21 QEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK   60 (527)
T ss_pred             cHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445556666665432 235567899999999999998865

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=96.11  E-value=0.019  Score=52.16  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=50.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||.+.+....+.    +..+..   -+. +.....+.+...+..-+......  ...+.     
T Consensus       155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~---~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r  227 (432)
T PRK06793        155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVIS---LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ  227 (432)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEE---eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH
Confidence            3468899999999999999998874321    122212   222 33566666665555432211100  00010     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.......+.+++  +++..||++||+
T Consensus       228 ~ra~~~a~~iAEyfr~~G~~VLlilDsl  255 (432)
T PRK06793        228 LRAAKLATSIAEYFRDQGNNVLLMMDSV  255 (432)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence             1222333455555  479999999996

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.11  E-value=0.005  Score=50.32  Aligned_cols=24  Identities=17%  Similarity=0.094  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.|++|+|++|+|||||.+.+..
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            357999999999999999999976

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.10  E-value=0.0045  Score=52.28  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=22.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+...|-++||+|+||||..+.++.+
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~h   42 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSH   42 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHH
Confidence            45678889999999999999999874

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.10  E-value=0.004  Score=48.66  Aligned_cols=21  Identities=14%  Similarity=0.116  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |++|+|+.|+|||||+..+..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~   21 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVK   21 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998887

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK06936 type III secretion system ATPase; Provisional

Probab=96.10  E-value=0.022  Score=51.75  Aligned_cols=90  Identities=11%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc-ccc-CCC----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS-VII-GED----  234 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~-~~~-~~~----  234 (261)
                      +-..++|.|..|+|||||.+.+.+...    -++.+.+   -+.... ...++....+..-+...... ... +..    
T Consensus       161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~---liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R  233 (439)
T PRK06936        161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLA---LIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMER  233 (439)
T ss_pred             CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEE---EEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHH
Confidence            356899999999999999999988432    2456666   665543 33444444333211111100 000 101    


Q ss_pred             --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 --YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 --~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                        .....-.+.+++  .+|+.|+++||+
T Consensus       234 ~~a~~~a~tiAEyfrd~G~~Vll~~Dsl  261 (439)
T PRK06936        234 AKAGFVATSIAEYFRDQGKRVLLLMDSV  261 (439)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence              111122355555  589999999997

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=96.09  E-value=0.02  Score=52.02  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +-..++|+|..|+|||||++.+...
T Consensus       154 ~GQ~igI~G~sGaGKSTLl~~I~g~  178 (434)
T PRK07196        154 KGQRVGLMAGSGVGKSVLLGMITRY  178 (434)
T ss_pred             cceEEEEECCCCCCccHHHHHHhcc
Confidence            4578999999999999999988773

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.09  E-value=0.039  Score=52.55  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=28.6

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        21 Qe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk   60 (618)
T PRK14951         21 QEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK   60 (618)
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445556666665542 346678999999999999998843

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.07  E-value=0.054  Score=43.45  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=24.3

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.+.+..+ .-.+.+-++|+.|+||||+|+.+..
T Consensus         3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~   36 (188)
T TIGR00678         3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAK   36 (188)
T ss_pred             HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344555433 2236788999999999999987755

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.07  E-value=0.012  Score=57.54  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...++.++|+.|+|||+||+.+..
T Consensus       483 p~~~~lf~Gp~GvGKT~lA~~la~  506 (731)
T TIGR02639       483 PVGSFLFTGPTGVGKTELAKQLAE  506 (731)
T ss_pred             CceeEEEECCCCccHHHHHHHHHH
Confidence            356789999999999999999987

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.06  E-value=0.01  Score=47.35  Aligned_cols=25  Identities=4%  Similarity=0.147  Sum_probs=22.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      -.++.|.|++|+||+||++.++.+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4688999999999999999999954

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.03  E-value=0.0055  Score=50.44  Aligned_cols=23  Identities=17%  Similarity=-0.005  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~G   52 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGG   52 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.03  E-value=0.0055  Score=50.16  Aligned_cols=23  Identities=13%  Similarity=-0.048  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=96.03  E-value=0.014  Score=53.42  Aligned_cols=93  Identities=12%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-.-++|.|..|+|||||+..+..+... ++=+..+++   -+... ....+++.++...-.......  ...+.     
T Consensus       143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~---liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r  218 (463)
T PRK09280        143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFA---GVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR  218 (463)
T ss_pred             cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEE---EeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence            3467899999999999999877543221 111355666   66544 345666776665422211100  00011     


Q ss_pred             -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL---TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L---~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++   +++.+||++||+
T Consensus       219 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl  247 (463)
T PRK09280        219 LRVALTGLTMAEYFRDVEGQDVLLFIDNI  247 (463)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEecch
Confidence             1222334467777   679999999997

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.02  E-value=0.0054  Score=48.75  Aligned_cols=22  Identities=5%  Similarity=0.125  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|.|+|+.|+||||+++.+..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHH
Confidence            4699999999999999999976

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.02  E-value=0.052  Score=50.56  Aligned_cols=40  Identities=13%  Similarity=-0.145  Sum_probs=27.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|...+..+ .-.+-+-++|+.|+||||+|+.+.+
T Consensus        26 q~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk   65 (507)
T PRK06645         26 QEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAK   65 (507)
T ss_pred             cHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHH
Confidence            344444555544433 2346788999999999999999976

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=96.01  E-value=0.025  Score=48.21  Aligned_cols=90  Identities=13%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             CeEEEEEEeCCCccHHHHH-HHHHcCCCccccccee-eEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-CH
Q 046049          162 RLSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDCH-AWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-DY  235 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~~  235 (261)
                      +-.-++|.|..|+|||+|| ..+.+..    +-+.. +++   -+.... ...++..++.+.-.......  ...+. -.
T Consensus        68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~---~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~  140 (274)
T cd01132          68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYV---AIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAP  140 (274)
T ss_pred             cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEE---ecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchh
Confidence            3467899999999999995 5565521    22333 555   665543 44566666654322111100  00011 11


Q ss_pred             H-----HHHHHHHHhc--cCCeEEEEeecC
Q 046049          236 Q-----LKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       236 ~-----~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      .     ...-.+.+++  +++..||++||+
T Consensus       141 ~r~~a~~~a~aiAE~fr~~G~~Vlvl~Dsl  170 (274)
T cd01132         141 LQYLAPYTGCAMGEYFMDNGKHALIIYDDL  170 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence            1     1123344444  589999999997

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=96.00  E-value=0.029  Score=51.83  Aligned_cols=93  Identities=13%  Similarity=0.096  Sum_probs=50.4

Q ss_pred             eEEEEEEeCCCccHHHHH-HHHHcCCCc-----ccccceeeEEecccccCCCCHHHHHHHHHHHhC-CCCCCc--cccCC
Q 046049          163 LSVVAILDGIGFDMTAFA-ADAFNNNHV-----KFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM-PPSRVS--VIIGE  233 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~-~~~~~~--~~~~~  233 (261)
                      -.-++|.|-.|+|||+|| -.+.+...+     .++-..++++   .+.+..+.-.=+.+.+++-+ ......  ...+.
T Consensus       189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyv---aIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde  265 (574)
T PTZ00185        189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYV---SIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE  265 (574)
T ss_pred             CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEE---EeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence            457899999999999997 455554322     1234567788   88776543222333333333 111100  00000


Q ss_pred             -C-----HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -D-----YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~-----~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -     ..-..-.+.+++  +++..|||+||+
T Consensus       266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL  298 (574)
T PTZ00185        266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL  298 (574)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence             0     011222344444  589999999997

>PRK08356 hypothetical protein; Provisional

Probab=96.00  E-value=0.0061  Score=49.42  Aligned_cols=21  Identities=19%  Similarity=0.108  Sum_probs=19.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      ..+|.|+|++|+||||+|+.+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l   25 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFF   25 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999998

>PRK14527 adenylate kinase; Provisional

Probab=96.00  E-value=0.0059  Score=49.29  Aligned_cols=24  Identities=21%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|+|++|+||||+|+.+.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998875

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=96.00  E-value=0.011  Score=53.18  Aligned_cols=31  Identities=16%  Similarity=0.085  Sum_probs=26.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFD  194 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~  194 (261)
                      ....+-|+|..|.|||.|++++.+  ....+..
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~  142 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGP  142 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCC
Confidence            478999999999999999999999  4445444

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.99  E-value=0.0052  Score=48.69  Aligned_cols=20  Identities=15%  Similarity=0.182  Sum_probs=17.4

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|.|.+|+|||||.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            67999999999999999876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.99  E-value=0.011  Score=49.05  Aligned_cols=25  Identities=4%  Similarity=-0.027  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....+.|+|+.|+|||+||+.+++.
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~   65 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVAD   65 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999999883

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.98  E-value=0.028  Score=51.85  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|++++|+.|+||||++.++..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            47999999999999998887765

>COG3903 Predicted ATPase [General function prediction only]

Probab=95.98  E-value=0.0056  Score=54.47  Aligned_cols=84  Identities=13%  Similarity=0.049  Sum_probs=55.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHH-HHHhCCCCCCccccCCCHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDI-IKSVMPPSRVSVIIGEDYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i-~~~l~~~~~~~~~~~~~~~~l~~  240 (261)
                      ..+.+.++|.|||||||++-.+-.   +..-|..-.|+   ..-.+.+-..++--+ ...++....       .-+.-..
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~---vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~   79 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAF---VDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVD   79 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---Hhhhcccceee---eeccccCchhHhHHHHHhhcccccc-------cchHHHH
Confidence            468999999999999999988776   55667666655   344444444444333 333554432       2233344


Q ss_pred             HHHHhccCCeEEEEeecC
Q 046049          241 ILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~~kr~LlVlDDV  258 (261)
                      .+..++.++|.++|+|+-
T Consensus        80 ~~~~~~~~rr~llvldnc   97 (414)
T COG3903          80 TLVRRIGDRRALLVLDNC   97 (414)
T ss_pred             HHHHHHhhhhHHHHhcCc
Confidence            567777888999999873

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=95.98  E-value=0.0058  Score=48.78  Aligned_cols=22  Identities=5%  Similarity=0.009  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|+|+.|+|||||++.+..
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~   25 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAA   25 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=95.98  E-value=0.03  Score=50.82  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCCc--cccCC-C---
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRVS--VIIGE-D---  234 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~~--~~~~~-~---  234 (261)
                      .-..++|+|..|+|||||.+.+....  ..  +..+.+   .+.. .-...++..+.+..-+......  ...+. .   
T Consensus       139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~~--~~gvi~---~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r  211 (418)
T TIGR03498       139 RGQRLGIFAGSGVGKSTLLSMLARNT--DA--DVVVIA---LVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMR  211 (418)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEE---EEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHH
Confidence            34689999999999999999888742  22  222222   2222 2334445554443322111100  00011 1   


Q ss_pred             --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 --YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 --~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                        .....-.+.+++  +++..|+++||+
T Consensus       212 ~~a~~~a~~iAEyfrd~G~~Vll~~Dsl  239 (418)
T TIGR03498       212 RQAAYTATAIAEYFRDQGKDVLLLMDSV  239 (418)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEeccch
Confidence              111223356666  579999999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.97  E-value=0.035  Score=44.02  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|.|.+|+||||+|..+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~   23 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAA   23 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998865

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.97  E-value=0.054  Score=51.60  Aligned_cols=40  Identities=13%  Similarity=-0.055  Sum_probs=28.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        21 Qe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk   60 (700)
T PRK12323         21 QEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK   60 (700)
T ss_pred             cHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence            4455566676665442 245668899999999999998855

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=95.96  E-value=0.0057  Score=50.09  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      .-|.|+|++|+|||||+..+..+.
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~   29 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc
Confidence            578899999999999999998753

>PLN02348 phosphoribulokinase

Probab=95.96  E-value=0.0089  Score=53.40  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          160 PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       160 ~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..-+|+|.|.+|+||||+|+.+.+
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~   71 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTS   71 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999998876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.96  E-value=0.006  Score=50.14  Aligned_cols=23  Identities=13%  Similarity=0.119  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILG   51 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=95.96  E-value=0.049  Score=52.23  Aligned_cols=40  Identities=20%  Similarity=0.051  Sum_probs=30.4

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+..|.+++..+. -.+-+-++|+.|+||||+|+.+..
T Consensus        21 Qe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk   60 (709)
T PRK08691         21 QEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK   60 (709)
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence            5666677777776542 245678999999999999998865

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.96  E-value=0.0092  Score=51.83  Aligned_cols=35  Identities=14%  Similarity=0.063  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++-+........+|+|+|++|+|||||+..+..
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34444433345689999999999999999988765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK04182 cytidylate kinase; Provisional

Probab=95.95  E-value=0.0061  Score=48.28  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=20.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|.|.|+.|+||||+|+.+...
T Consensus         2 ~I~i~G~~GsGKstia~~la~~   23 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999873

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.95  E-value=0.012  Score=47.42  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=27.0

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+...++......   -..+.|+|+.|+|||||++.+..
T Consensus        11 ~~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          11 SPLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CHHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence            34445555554443   46899999999999999998865

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=95.95  E-value=0.0075  Score=46.62  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCC
Q 046049          165 VVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      -|+++|.+|+|||||.+.+.++.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~   24 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDE   24 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999887643

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.94  E-value=0.021  Score=55.81  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=29.8

Q ss_pred             hhHhHHHHHHHHhc---CC--------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE---GP--------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~--------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|.+++..   .+        ....-+.++|++|+||||||+.+.+
T Consensus       183 ~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~  234 (733)
T TIGR01243       183 LKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN  234 (733)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence            66667776665521   10        2235678999999999999999988

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.02  Score=53.25  Aligned_cols=32  Identities=16%  Similarity=-0.016  Sum_probs=25.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccce
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC  195 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~  195 (261)
                      ....+-++|++|+|||.||+.+.+  ....+|-.
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~  306 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS  306 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE
Confidence            456889999999999999999999  44445543

>PLN02796 D-glycerate 3-kinase

Probab=95.93  E-value=0.007  Score=53.21  Aligned_cols=24  Identities=17%  Similarity=0.063  Sum_probs=22.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+|+|.|..|+|||||++.+..
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            568999999999999999999876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.93  E-value=0.0066  Score=50.21  Aligned_cols=23  Identities=17%  Similarity=-0.008  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..++|+|+.|+|||||...+.-
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999998864

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.92  E-value=0.0066  Score=48.88  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.92  E-value=0.0071  Score=49.65  Aligned_cols=24  Identities=13%  Similarity=0.110  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .. .+++|+|+.|+|||||++.+..
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G   45 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAG   45 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhC
Confidence            35 8999999999999999999975

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.92  E-value=0.063  Score=47.90  Aligned_cols=40  Identities=10%  Similarity=-0.021  Sum_probs=30.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+...+.+.+.+..+ .-.+.+-++|++|+||||+|+.+.+
T Consensus        22 ~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~   61 (367)
T PRK14970         22 QSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILAR   61 (367)
T ss_pred             cHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            455566777777553 2346888999999999999998866

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.91  E-value=0.0069  Score=48.29  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G   48 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAG   48 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999975

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.91  E-value=0.015  Score=50.97  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+++|++|+||||++..+..
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999998887754

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.91  E-value=0.0075  Score=49.07  Aligned_cols=24  Identities=13%  Similarity=-0.025  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+|.|.|++|+||||+|+.+...
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~   26 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARH   26 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999998873

>PLN02200 adenylate kinase family protein

Probab=95.90  E-value=0.0075  Score=50.47  Aligned_cols=24  Identities=13%  Similarity=0.104  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|++|+||||+|+.+..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.90  E-value=0.0068  Score=48.41  Aligned_cols=23  Identities=9%  Similarity=0.122  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=95.90  E-value=0.0081  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.148  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++.|+|.+|+||||+.+.+-.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~   26 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALK   26 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Confidence            58999999999999999887765

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=95.89  E-value=0.007  Score=49.37  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+++|+.|+||||+|+.+-+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~   24 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE   24 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH
Confidence            46899999999999999997765

>PRK13948 shikimate kinase; Provisional

Probab=95.89  E-value=0.007  Score=48.60  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....|.++||.|+||||+++.+.+
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~   32 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSR   32 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            357888999999999999999976

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.89  E-value=0.0043  Score=50.36  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|-+.|.+|+||||+|+.+..
T Consensus         2 pLiIlTGyPgsGKTtfakeLak   23 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAK   23 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHH
Confidence            3566789999999999998766

>TIGR00416 sms DNA repair protein RadA

Probab=95.87  E-value=0.042  Score=50.58  Aligned_cols=99  Identities=15%  Similarity=0.064  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVS  228 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~  228 (261)
                      ...+-++|..+=..-.++.|.|.+|+|||||+..+..... +.. ...+|+   +..  .+...+... +..++......
T Consensus        80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a-~~g-~kvlYv---s~E--Es~~qi~~r-a~rlg~~~~~l  151 (454)
T TIGR00416        80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA-KNQ-MKVLYV---SGE--ESLQQIKMR-AIRLGLPEPNL  151 (454)
T ss_pred             cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH-hcC-CcEEEE---ECc--CCHHHHHHH-HHHcCCChHHe
Confidence            3344444544434568999999999999999998855211 111 245666   543  334444322 23343322110


Q ss_pred             cccCC-CHHHHHHHHHHhccCCeEEEEeecC
Q 046049          229 VIIGE-DYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       229 ~~~~~-~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      .-... +.+.+...+.+   .+--++|+|.+
T Consensus       152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSI  179 (454)
T TIGR00416       152 YVLSETNWEQICANIEE---ENPQACVIDSI  179 (454)
T ss_pred             EEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence            11122 55555555433   23457888864

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK06761 hypothetical protein; Provisional

Probab=95.87  E-value=0.014  Score=50.08  Aligned_cols=23  Identities=17%  Similarity=0.072  Sum_probs=21.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+|.|.|++|+||||+++.+.+.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~   26 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDI   26 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999999984

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.86  E-value=0.007  Score=50.46  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVG   48 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06620 hypothetical protein; Validated

Probab=95.85  E-value=0.007  Score=49.94  Aligned_cols=23  Identities=13%  Similarity=-0.200  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+-|+|++|+|||+|++.+.+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999998774

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.84  E-value=0.0074  Score=49.79  Aligned_cols=24  Identities=13%  Similarity=0.007  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+..-
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.83  E-value=0.0075  Score=49.47  Aligned_cols=23  Identities=9%  Similarity=0.008  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999865

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=95.83  E-value=0.031  Score=51.05  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=22.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-..++|+|..|+|||||++.+...
T Consensus       157 ~Gq~i~I~G~sG~GKStLl~~I~~~  181 (438)
T PRK07721        157 KGQRVGIFAGSGVGKSTLMGMIARN  181 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4578999999999999999988773

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.83  E-value=0.0075  Score=47.37  Aligned_cols=21  Identities=19%  Similarity=0.096  Sum_probs=19.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|.|.|+.|+||||+|+.+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~   22 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAE   22 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999876

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.83  E-value=0.0082  Score=47.11  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=20.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|..|+|||||+..+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~   23 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIP   23 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998887

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.82  E-value=0.05  Score=51.99  Aligned_cols=40  Identities=18%  Similarity=-0.036  Sum_probs=28.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..+..|...+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        21 Qe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk   60 (647)
T PRK07994         21 QEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK   60 (647)
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444556666665432 234567899999999999998866

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.82  E-value=0.0064  Score=47.65  Aligned_cols=21  Identities=14%  Similarity=0.120  Sum_probs=17.2

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+|.|..|+|||||++.+...
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999998873

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.81  E-value=0.023  Score=48.93  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=23.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|+|.+|+|||||...+.+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~  126 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLM  126 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999998887

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.81  E-value=0.0078  Score=49.24  Aligned_cols=24  Identities=13%  Similarity=0.007  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||++.+...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.81  E-value=0.0075  Score=50.48  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999865

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.81  E-value=0.0077  Score=49.60  Aligned_cols=23  Identities=13%  Similarity=-0.019  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTG   50 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13695 putative NTPase; Provisional

Probab=95.81  E-value=0.0073  Score=47.94  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .|+|+|++|+|||||++.+++.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998773

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.81  E-value=0.0078  Score=48.10  Aligned_cols=23  Identities=17%  Similarity=0.017  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            46999999999999999999876

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK01184 hypothetical protein; Provisional

Probab=95.80  E-value=0.0077  Score=48.17  Aligned_cols=19  Identities=11%  Similarity=0.195  Sum_probs=17.1

Q ss_pred             EEEEEEeCCCccHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAAD  182 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~  182 (261)
                      .+|+|+|++|+||||+++.
T Consensus         2 ~~i~l~G~~GsGKsT~a~~   20 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSKI   20 (184)
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            4899999999999999883

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.79  E-value=0.0077  Score=50.31  Aligned_cols=23  Identities=13%  Similarity=0.034  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNG   49 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999965

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.78  E-value=0.0058  Score=51.24  Aligned_cols=19  Identities=16%  Similarity=0.172  Sum_probs=16.4

Q ss_pred             EEeCCCccHHHHHHHHHcC
Q 046049          168 ILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       168 IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+||+|+||||+++.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~   19 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEW   19 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHH
Confidence            6899999999999998773

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13946 shikimate kinase; Provisional

Probab=95.78  E-value=0.0073  Score=48.48  Aligned_cols=23  Identities=9%  Similarity=0.086  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.|.++||+|+||||+++.+.+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~   32 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLAT   32 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999977

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.78  E-value=0.0082  Score=49.23  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=95.77  E-value=0.027  Score=51.43  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +-..++|+|..|+|||||.+.+...
T Consensus       162 ~Gq~~~I~G~sG~GKStLl~~I~~~  186 (440)
T TIGR01026       162 KGQRIGIFAGSGVGKSTLLGMIARN  186 (440)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999988874

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.77  E-value=0.0083  Score=49.71  Aligned_cols=23  Identities=9%  Similarity=0.037  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G   48 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNR   48 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46999999999999999998865

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=95.77  E-value=0.04  Score=48.06  Aligned_cols=75  Identities=9%  Similarity=0.096  Sum_probs=47.4

Q ss_pred             hHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcc--ccc---ceeeEEecccccCCCCHHHHHHHHHH
Q 046049          146 ERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFNNNHVK--FYF---DCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      +...+.|.+.|.+.+ ....+|+|.|.=|+||||+.+.+.+.-+-.  ..+   ..-+|-   .-+.+--...++..|..
T Consensus         2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~---~~~~~~~~~~~~~~l~~   78 (325)
T PF07693_consen    2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE---YDGEDDLWASFLEELFD   78 (325)
T ss_pred             hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc---CCCcchHHHHHHHHHHH
Confidence            445667778777653 678999999999999999999987732222  112   222454   33333334556666666


Q ss_pred             HhCC
Q 046049          220 SVMP  223 (261)
Q Consensus       220 ~l~~  223 (261)
                      ++..
T Consensus        79 ~l~~   82 (325)
T PF07693_consen   79 QLEK   82 (325)
T ss_pred             HHHH
Confidence            6543

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.76  E-value=0.0098  Score=43.66  Aligned_cols=21  Identities=14%  Similarity=0.142  Sum_probs=19.5

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+|+|+.|+|||||...+.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.76  E-value=0.019  Score=45.09  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          148 GREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       148 ~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..++|.++|.+     +++.++|..|+||+||...+..+
T Consensus        25 g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   25 GIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             THHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence            36677777733     68999999999999999999876

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.75  E-value=0.0086  Score=49.08  Aligned_cols=24  Identities=8%  Similarity=0.083  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+..-
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999763

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.74  E-value=0.0082  Score=49.21  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G   47 (213)
T cd03235          25 GEFLAIVGPNGAGKSTLLKAILG   47 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999966

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.74  E-value=0.0086  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAG   48 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999976

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.74  E-value=0.0086  Score=49.65  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            47999999999999999999975

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.73  E-value=0.0089  Score=48.38  Aligned_cols=24  Identities=8%  Similarity=-0.020  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            469999999999999999999763

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.72  E-value=0.0091  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999998865

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.72  E-value=0.0087  Score=49.94  Aligned_cols=23  Identities=17%  Similarity=0.046  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (236)
T TIGR03864        27 GEFVALLGPNGAGKSTLFSLLTR   49 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999975

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.71  E-value=0.0087  Score=50.04  Aligned_cols=23  Identities=22%  Similarity=0.089  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.71  E-value=0.0097  Score=45.68  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      +-|-++|..|+|||||++.+...+
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            357899999999999999997743

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.70  E-value=0.018  Score=52.24  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-+.++|++|+|||+||+.+..
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~  130 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLAR  130 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999999976

>cd01862 Rab7 Rab7 subfamily

Probab=95.70  E-value=0.0093  Score=46.60  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|+|+|.+|+|||||+..+.++
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.70  E-value=0.0092  Score=49.22  Aligned_cols=23  Identities=13%  Similarity=-0.015  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999999976

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04163 Era Era subfamily

Probab=95.70  E-value=0.012  Score=45.20  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+|+++|..|+|||||...+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999998664

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=95.69  E-value=0.0087  Score=51.24  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|+|+|.+|+|||||+..+..
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~   23 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVD   23 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998877

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=95.69  E-value=0.031  Score=50.66  Aligned_cols=90  Identities=12%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-..++|+|..|+|||||.+.+.....  .  +..+..   .+.... ...++..+.+.+-+......  ...+.     
T Consensus       136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~--~--~~gvi~---~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r  208 (413)
T TIGR03497       136 KGQRVGIFAGSGVGKSTLLGMIARNAK--A--DINVIA---LIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMR  208 (413)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEE---EEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHH
Confidence            457899999999999999998877322  1  222222   333322 33444444433311111000  00000     


Q ss_pred             -CHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++  +++..|+++||+
T Consensus       209 ~~~~~~a~tiAEyfr~~G~~Vll~~Dsl  236 (413)
T TIGR03497       209 LKAAFTATAIAEYFRDQGKDVLLMMDSV  236 (413)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence             1112333455565  589999999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.69  E-value=0.0082  Score=49.13  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=19.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +++|+|+.|+|||||++.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~G   47 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILAT   47 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhC
Confidence            899999999999999999975

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.69  E-value=0.0093  Score=49.17  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G   53 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGG   53 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.67  E-value=0.0091  Score=49.39  Aligned_cols=23  Identities=9%  Similarity=0.146  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (228)
T cd03257          31 GETLGLVGESGSGKSTLARAILG   53 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999975

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.66  E-value=0.012  Score=45.77  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.+.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.66  E-value=0.032  Score=53.18  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=36.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      +.-++.-.+|++|+||||||..|..+.    .|. ++=|   ..|...+...+-..|...+.
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEI---NASDeRt~~~v~~kI~~avq  377 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEI---NASDERTAPMVKEKIENAVQ  377 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEe---cccccccHHHHHHHHHHHHh
Confidence            456899999999999999999998842    121 2223   66777666655555554443

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.66  E-value=0.071  Score=50.45  Aligned_cols=40  Identities=13%  Similarity=0.017  Sum_probs=29.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+.+.+..+. -.+-+-++|+.|+||||+|+.+.+
T Consensus        21 Qe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk   60 (605)
T PRK05896         21 QELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK   60 (605)
T ss_pred             cHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            5555666777665442 245688999999999999998865

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.66  E-value=0.0098  Score=48.43  Aligned_cols=23  Identities=13%  Similarity=-0.067  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G   46 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGL   46 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.65  E-value=0.0086  Score=48.14  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=18.9

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|.|++|+||||+|+.+...
T Consensus         2 I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998773

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.65  E-value=0.0075  Score=50.83  Aligned_cols=21  Identities=10%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.++|++|+||||+|+.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999998876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=95.65  E-value=0.035  Score=50.63  Aligned_cols=93  Identities=11%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCccc--ccc---------eeeEEecccccCCCCHHHHHHHHHHHhC-CCCCCc--
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKF--YFD---------CHAWVKNLSVSIAYDFGKILDDIIKSVM-PPSRVS--  228 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~vs~~~~~~~il~~i~~~l~-~~~~~~--  228 (261)
                      -.-++|.|-.|+|||||+..+.++.....  ..|         .++++   .+.......+.+.+.+..-+ ......  
T Consensus       141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a---~IGerre~~efi~~~l~~~g~l~rtvvv~  217 (466)
T TIGR01040       141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFA---AMGVNMETARFFKQDFEENGSMERVCLFL  217 (466)
T ss_pred             CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEE---EeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence            46789999999999999998876543100  012         55666   77777665665555555544 211100  


Q ss_pred             cccCC------CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          229 VIIGE------DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       229 ~~~~~------~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                      ...+.      -.....-.+.++++   ++..|+++||+
T Consensus       218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl  256 (466)
T TIGR01040       218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM  256 (466)
T ss_pred             ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence            00000      12223334667775   59999999997

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=95.64  E-value=0.008  Score=48.05  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|+.|+||||+++.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998866

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.64  E-value=0.0099  Score=48.46  Aligned_cols=23  Identities=17%  Similarity=-0.032  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G   49 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAG   49 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999976

>PRK14532 adenylate kinase; Provisional

Probab=95.64  E-value=0.0088  Score=48.02  Aligned_cols=20  Identities=5%  Similarity=-0.047  Sum_probs=18.3

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.+.|++|+||||+|+.+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999998876

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=95.64  E-value=0.0092  Score=47.17  Aligned_cols=21  Identities=5%  Similarity=0.113  Sum_probs=18.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|..+||.|+||||+.+.+..
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk   24 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAK   24 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHH
Confidence            477899999999999999965

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=95.64  E-value=0.032  Score=51.11  Aligned_cols=93  Identities=15%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccc--eeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc-ccc-CC----
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFD--CHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS-VII-GE----  233 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~-~~~-~~----  233 (261)
                      -.-++|.|-.|+|||||+..+.+.......+.  .++.+   .+... ....+++.++...-....... ... +.    
T Consensus       141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~---~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~  217 (458)
T TIGR01041       141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFA---AMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVE  217 (458)
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEE---EccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence            46789999999999999998887543321121  45666   66544 445666666654332211100 000 00    


Q ss_pred             --CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          234 --DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       234 --~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                        -.......+.++++   +++.||++||+
T Consensus       218 R~~a~~~a~tiAEyfr~d~G~~VLli~Dsl  247 (458)
T TIGR01041       218 RIVTPRMALTAAEYLAFEKDMHVLVILTDM  247 (458)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence              12222333667775   78899999997

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.63  E-value=0.01  Score=49.22  Aligned_cols=24  Identities=8%  Similarity=-0.118  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+...
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999999999763

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.01  Score=49.48  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.62  E-value=0.01  Score=49.43  Aligned_cols=23  Identities=9%  Similarity=0.040  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCING   53 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999965

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.62  E-value=0.01  Score=48.88  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~G   35 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCG   35 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999999986

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.62  E-value=0.01  Score=50.08  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+...
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~   48 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGV   48 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.01  Score=50.32  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAG   49 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=95.61  E-value=0.0094  Score=47.03  Aligned_cols=22  Identities=9%  Similarity=0.079  Sum_probs=19.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|.|+|+.|+||||+++.+..
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~   24 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQ   24 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999876

>PRK00698 tmk thymidylate kinase; Validated

Probab=95.61  E-value=0.011  Score=48.04  Aligned_cols=22  Identities=9%  Similarity=-0.156  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||+++.+.+
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~   25 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKE   25 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998876

>cd04155 Arl3 Arl3 subfamily

Probab=95.61  E-value=0.0098  Score=46.67  Aligned_cols=25  Identities=12%  Similarity=-0.047  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +..-|+|+|++|+|||||.+.+...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            3566999999999999999999874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.61  E-value=0.0081  Score=51.46  Aligned_cols=21  Identities=10%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|..|+|||||++.+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~   21 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTS   21 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=95.60  E-value=0.011  Score=45.81  Aligned_cols=21  Identities=10%  Similarity=0.121  Sum_probs=18.9

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||...+.+.
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=95.60  E-value=0.082  Score=48.14  Aligned_cols=90  Identities=10%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccC-CCCHHHHHHHHHHHhCCCCCC-ccccCC--C---
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSI-AYDFGKILDDIIKSVMPPSRV-SVIIGE--D---  234 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~-~~~~~~il~~i~~~l~~~~~~-~~~~~~--~---  234 (261)
                      .-..++|+|..|+|||||.+.+....  .  -+..+.+   .+.. ......+..+........... ......  .   
T Consensus       144 ~Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~---~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r  216 (422)
T TIGR02546       144 EGQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIA---LIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLER  216 (422)
T ss_pred             CCCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEE---EEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHH
Confidence            35678999999999999999998732  2  2333334   3333 334444444433322111110 000011  1   


Q ss_pred             --HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 --YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 --~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                        .......+.+++  .+++.|+++||+
T Consensus       217 ~~~~~~a~~~AE~f~~~g~~Vl~~~Dsl  244 (422)
T TIGR02546       217 LKAAYTATAIAEYFRDQGKRVLLMMDSL  244 (422)
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence              112333455555  478999999997

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.60  E-value=0.096  Score=49.64  Aligned_cols=40  Identities=20%  Similarity=-0.040  Sum_probs=29.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|..++..+. -.+.+-++|+.|+||||+|+.+..
T Consensus        18 q~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk   57 (584)
T PRK14952         18 QEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR   57 (584)
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4455566777765542 345578999999999999998875

>TIGR01287 nifH nitrogenase iron protein

Probab=95.59  E-value=0.0085  Score=51.22  Aligned_cols=21  Identities=14%  Similarity=0.129  Sum_probs=17.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +.|+|+|-||+||||++..+.
T Consensus         1 ~~ia~~gKGGVGKTT~a~nLA   21 (275)
T TIGR01287         1 RQIAIYGKGGIGKSTTTQNIA   21 (275)
T ss_pred             CeeEEeCCCcCcHHHHHHHHH
Confidence            368999999999999877654

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>smart00072 GuKc Guanylate kinase homologues

Probab=95.58  E-value=0.014  Score=46.75  Aligned_cols=24  Identities=8%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .++|.|+|++|+||+||+..+...
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~   25 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQE   25 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhc
Confidence            368999999999999999999874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd04159 Arl10_like Arl10-like subfamily

Probab=95.58  E-value=0.013  Score=44.63  Aligned_cols=21  Identities=5%  Similarity=-0.028  Sum_probs=19.3

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+|+|.+|+|||||.+.+...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999775

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.57  E-value=0.011  Score=48.45  Aligned_cols=24  Identities=17%  Similarity=-0.028  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.57  E-value=0.058  Score=53.58  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..++.++|+.|+|||+||+.+.+
T Consensus       598 ~~~~Lf~Gp~G~GKT~lA~aLa~  620 (857)
T PRK10865        598 IGSFLFLGPTGVGKTELCKALAN  620 (857)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999986

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.57  E-value=0.016  Score=51.92  Aligned_cols=24  Identities=13%  Similarity=-0.009  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+|+|..|+|||||+..+..
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~   27 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVR   27 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            357999999999999999998886

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=95.57  E-value=0.032  Score=50.28  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHH-HHHHcCCCcccccceee
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDCHA  197 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~~~  197 (261)
                      |.+..+.|..||....  -..|.|.||-|+||+.|+ ..+..+.+-.-..||.-
T Consensus         1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~   52 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQ   52 (431)
T ss_pred             CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChH
Confidence            4567889999998765  468999999999999999 77777644333445543

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=95.57  E-value=0.01  Score=46.56  Aligned_cols=23  Identities=9%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|++|+|+.++|||||...+..
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~   24 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHH
Confidence            47999999999999999998854

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.57  E-value=0.015  Score=49.84  Aligned_cols=65  Identities=18%  Similarity=0.067  Sum_probs=40.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHH
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDD  216 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~  216 (261)
                      -.+|+..|.....+..+|+|.|.||+||+||.-.+-..-.-+.|==..+=|   .=|.+|+-..||-+
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV---DPSSp~TGGsiLGD  101 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV---DPSSPFTGGSILGD  101 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE---CCCCCCCCcccccc
Confidence            456677776666778999999999999999987765521111111112222   33666666666644

>cd04113 Rab4 Rab4 subfamily

Probab=95.57  E-value=0.012  Score=45.67  Aligned_cols=21  Identities=14%  Similarity=0.194  Sum_probs=18.9

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|+|.+|+|||||.+.+.+.
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=95.56  E-value=0.019  Score=50.16  Aligned_cols=25  Identities=12%  Similarity=0.072  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-..|.++||.|+||||+++.+..
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~  155 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAA  155 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999876

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=95.56  E-value=0.096  Score=47.29  Aligned_cols=40  Identities=13%  Similarity=-0.133  Sum_probs=27.6

Q ss_pred             hHhHHHHHHHHhcCCC--------CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPP--------RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~--------~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..++.|.+++.....        -.+-+-++|+.|+||||+|+.+..
T Consensus        11 ~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~   58 (394)
T PRK07940         11 EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA   58 (394)
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4445556666654321        245688999999999999998754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.56  E-value=0.01  Score=49.46  Aligned_cols=23  Identities=9%  Similarity=-0.041  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISG   48 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999975

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10536 hypothetical protein; Provisional

Probab=95.56  E-value=0.02  Score=48.32  Aligned_cols=38  Identities=8%  Similarity=0.052  Sum_probs=30.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +......++.+|.+.    .++.+.|+.|+|||+||..+..+
T Consensus        60 ~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         60 RNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence            666667777777542    49999999999999999987664

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.56  E-value=0.015  Score=47.76  Aligned_cols=52  Identities=15%  Similarity=0.004  Sum_probs=28.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCC-----cccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNH-----VKFYFDCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      +..|.|++|.||||++..+.....     ....-...+-+   +...+.....++..+.+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~---~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILV---VSPSNAAVDNILERLKK   75 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEE---EESSHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhhcccccee---ecCCchhHHHHHHHHHh
Confidence            788999999999975554443210     11223344444   44444566677777666

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.55  E-value=0.011  Score=49.19  Aligned_cols=23  Identities=4%  Similarity=0.039  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~G   33 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISG   33 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.55  E-value=0.012  Score=44.58  Aligned_cols=23  Identities=9%  Similarity=0.179  Sum_probs=20.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCC
Q 046049          165 VVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      -|+++|.+|+|||||...+....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.55  E-value=0.01  Score=52.39  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..++++|++|+|||||.+.|.-
T Consensus        31 Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          31 GEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999954

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.54  E-value=0.11  Score=47.03  Aligned_cols=40  Identities=15%  Similarity=-0.126  Sum_probs=28.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|..++..+. -.+-+-++|+.|+||||+|..+.+
T Consensus        21 q~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~   60 (397)
T PRK14955         21 QEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK   60 (397)
T ss_pred             hHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence            3444556666665432 234577899999999999998765

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=95.54  E-value=0.026  Score=45.87  Aligned_cols=22  Identities=14%  Similarity=0.077  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..|.|++|+||||+.+.+..
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~   40 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAE   40 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHH
T ss_pred             eEEEEEECCCCCHHHHHHHHHH
Confidence            6788899999999999998766

>smart00175 RAB Rab subfamily of small GTPases

Probab=95.54  E-value=0.012  Score=45.48  Aligned_cols=21  Identities=5%  Similarity=0.224  Sum_probs=19.1

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||.+.+.+.
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999764

Rab GTPases are implicated in vesicle trafficking.

>cd00876 Ras Ras family

Probab=95.53  E-value=0.014  Score=44.82  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|+|++|+|||||...+.+.
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=95.53  E-value=0.028  Score=46.91  Aligned_cols=54  Identities=11%  Similarity=0.058  Sum_probs=32.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      +.-.++.|.|++|+|||||+..+... ..++. ...+++   +  ..-+..++++.+ .+++
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi---~--~e~~~~~~~~~~-~~~g   75 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYV---S--TQLTTTEFIKQM-MSLG   75 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEE---e--CCCCHHHHHHHH-HHhC
Confidence            34569999999999999997554332 22222 233555   4  344556666665 3444

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.52  E-value=0.02  Score=53.07  Aligned_cols=24  Identities=13%  Similarity=-0.013  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+-|-++|++|+|||.+|+.+.+.
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e  282 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIAND  282 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            456889999999999999999883

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.52  E-value=0.011  Score=49.01  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.52  E-value=0.09  Score=48.72  Aligned_cols=39  Identities=10%  Similarity=-0.073  Sum_probs=26.4

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..++.|.+.+..+. -.+-+-++|+.|+||||+|+.+..
T Consensus        19 e~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         19 DVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence            344444555554332 235788999999999999988754

>PRK15453 phosphoribulokinase; Provisional

Probab=95.51  E-value=0.012  Score=50.29  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+|.|.+|+||||+|+.+.+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~   27 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEK   27 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=95.51  E-value=0.012  Score=48.40  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+++.|+|+.|.|||||.+.+.
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            4889999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.51  E-value=0.01  Score=53.63  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=22.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-...|+|+|..|+|||||++.+..
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~  241 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLAN  241 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999999998876

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.51  E-value=0.012  Score=49.38  Aligned_cols=24  Identities=8%  Similarity=-0.083  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         28 GETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

>PRK10908 cell division protein FtsE; Provisional

Probab=95.51  E-value=0.012  Score=48.65  Aligned_cols=23  Identities=4%  Similarity=-0.086  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         28 GEMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999999975

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.49  E-value=0.11  Score=41.23  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      ++.|.|.+|+|||++|......     .....+++   .-+..++. ++.+.|..
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~---at~~~~d~-em~~rI~~   46 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYI---ATAEAFDD-EMAERIAR   46 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEE---EccCcCCH-HHHHHHHH
Confidence            3678999999999999987652     22456677   66666654 35555444

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.49  E-value=0.012  Score=49.31  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        26 GEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.48  E-value=0.012  Score=49.95  Aligned_cols=23  Identities=13%  Similarity=0.054  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~G   60 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAG   60 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

>cd00879 Sar1 Sar1 subfamily

Probab=95.48  E-value=0.032  Score=44.53  Aligned_cols=24  Identities=8%  Similarity=-0.105  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+|+|++|+|||||...+..+
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            455699999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.48  E-value=0.012  Score=47.72  Aligned_cols=25  Identities=8%  Similarity=-0.085  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-.+++|+|+.|+|||||.+.+...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3579999999999999999998763

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.48  E-value=0.012  Score=49.27  Aligned_cols=23  Identities=9%  Similarity=-0.058  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          27 GEFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.48  E-value=0.012  Score=49.46  Aligned_cols=23  Identities=9%  Similarity=0.138  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        30 G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          30 GEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            37999999999999999999976

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.48  E-value=0.012  Score=47.44  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14531 adenylate kinase; Provisional

Probab=95.47  E-value=0.012  Score=47.13  Aligned_cols=21  Identities=19%  Similarity=0.028  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|+|++|+||||+++.+..
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998866

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.47  E-value=0.012  Score=48.95  Aligned_cols=24  Identities=13%  Similarity=0.054  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+..-
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999763

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.47  E-value=0.012  Score=47.95  Aligned_cols=23  Identities=13%  Similarity=-0.003  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999999975

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=95.47  E-value=0.011  Score=54.82  Aligned_cols=23  Identities=9%  Similarity=0.027  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|||.+|+||||||+.+..
T Consensus       317 GE~lglVGeSGsGKSTlar~i~g  339 (539)
T COG1123         317 GETLGLVGESGSGKSTLARILAG  339 (539)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999965

>PRK02496 adk adenylate kinase; Provisional

Probab=95.46  E-value=0.011  Score=47.26  Aligned_cols=21  Identities=14%  Similarity=-0.048  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|+|++|+||||+|+.+..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>TIGR00017 cmk cytidylate kinase

Probab=95.46  E-value=0.014  Score=48.31  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=20.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||+++.+..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAE   24 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.46  E-value=0.013  Score=47.54  Aligned_cols=24  Identities=8%  Similarity=-0.071  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999998763

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.46  E-value=0.013  Score=48.04  Aligned_cols=23  Identities=17%  Similarity=0.016  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.45  E-value=0.013  Score=47.94  Aligned_cols=25  Identities=8%  Similarity=-0.124  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3579999999999999999998763

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=95.45  E-value=0.013  Score=45.07  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.+.+.++
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999888764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.44  E-value=0.013  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=-0.024  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||.+.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.44  E-value=0.014  Score=46.34  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G   50 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILG   50 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999976

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.43  E-value=0.013  Score=48.40  Aligned_cols=20  Identities=30%  Similarity=0.204  Sum_probs=17.7

Q ss_pred             EEEEEeCCCccHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .|+|+|-||+||||+|..+.
T Consensus         2 kIaI~GKGG~GKTtiaalll   21 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLL   21 (255)
T ss_pred             eEEEecCCCccHHHHHHHHH
Confidence            69999999999999988743

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.42  E-value=0.013  Score=49.37  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14247         29 NTITALMGPSGSGKSTLLRVFNR   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.42  E-value=0.013  Score=48.42  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||.+.+..
T Consensus        34 Ge~~~l~G~nGsGKSTLl~~i~G   56 (224)
T TIGR02324        34 GECVALSGPSGAGKSTLLKSLYA   56 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999975

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13768 GTPase; Provisional

Probab=95.42  E-value=0.013  Score=49.57  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=18.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|.|++|+||||++..+..
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~   24 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSD   24 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHH
Confidence            6889999999999998876643

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.42  E-value=0.013  Score=49.41  Aligned_cols=23  Identities=17%  Similarity=0.145  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.42  E-value=0.013  Score=50.60  Aligned_cols=22  Identities=9%  Similarity=0.128  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|-++|++|+||||+|+.+..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~   24 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAA   24 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5788899999999999999876

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.41  E-value=0.013  Score=47.82  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          33 GEMVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             CcEEEEECCCCCCHHHHHHHhccc
Confidence            469999999999999999998763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.41  E-value=0.016  Score=46.31  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|.+|+||||+|+.+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~   40 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEK   40 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998876

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF13245 AAA_19: Part of AAA domain

Probab=95.41  E-value=0.014  Score=39.75  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=17.2

Q ss_pred             eEEEEEEeCCCccHHH-HHHHHHc
Q 046049          163 LSVVAILDGIGFDMTA-FAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTt-La~~v~~  185 (261)
                      -+++.|.|++|.|||+ ++..+..
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            3577889999999994 5555544

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.41  E-value=0.013  Score=49.32  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        27 NQVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.40  E-value=0.013  Score=49.07  Aligned_cols=23  Identities=9%  Similarity=0.004  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.40  E-value=0.014  Score=44.90  Aligned_cols=24  Identities=4%  Similarity=-0.021  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999773

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.39  E-value=0.015  Score=44.97  Aligned_cols=21  Identities=14%  Similarity=0.321  Sum_probs=19.0

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||.+.+.+.
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999988775

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.39  E-value=0.031  Score=54.66  Aligned_cols=24  Identities=17%  Similarity=0.068  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+-+.++|++|+|||+||+.+.+.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e  510 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATE  510 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            345788999999999999999983

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.38  E-value=0.016  Score=52.21  Aligned_cols=24  Identities=13%  Similarity=-0.042  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+|+|.|..|+|||||++.+..
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~  234 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDY  234 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998854

>PLN02165 adenylate isopentenyltransferase

Probab=95.38  E-value=0.014  Score=51.09  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-.+|+|+|+.|+||||||..+...
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~   66 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATR   66 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHH
Confidence            3559999999999999999988763

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=95.38  E-value=0.12  Score=44.97  Aligned_cols=40  Identities=13%  Similarity=0.037  Sum_probs=28.1

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.....+..+........+-+-+.|++|+||||+|..+.+
T Consensus         7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~   46 (325)
T COG0470           7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK   46 (325)
T ss_pred             hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence            3445566666664432333499999999999999987765

>cd00154 Rab Rab family

Probab=95.38  E-value=0.015  Score=44.35  Aligned_cols=21  Identities=10%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|++|+|||||...+.+.
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998765

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=95.38  E-value=0.047  Score=49.90  Aligned_cols=93  Identities=13%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      +-.-++|.|..|+|||||+..+..+.. .++=.+.+++   -+... ....+++.++...-.......  ...+.     
T Consensus       142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~a---lIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R  217 (461)
T TIGR01039       142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFA---GVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR  217 (461)
T ss_pred             cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEE---EecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence            346789999999999999988765321 1222356666   66544 345666666654321111100  00011     


Q ss_pred             -CHHHHHHHHHHhc---cCCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYL---TDKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L---~~kr~LlVlDDV  258 (261)
                       -.....-.+.+++   +++.+||++||+
T Consensus       218 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl  246 (461)
T TIGR01039       218 MRVALTGLTMAEYFRDEQGQDVLLFIDNI  246 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeeEEEecch
Confidence             1122334567777   468999999997

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.38  E-value=0.015  Score=45.92  Aligned_cols=24  Identities=8%  Similarity=-0.101  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999773

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01864 Rab19 Rab19 subfamily

Probab=95.38  E-value=0.014  Score=45.48  Aligned_cols=24  Identities=8%  Similarity=0.050  Sum_probs=20.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~   26 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSG   26 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Confidence            356889999999999999888653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.37  E-value=0.012  Score=45.52  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=18.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++++.|.+|+||||++..+..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999988765

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=95.37  E-value=0.013  Score=47.62  Aligned_cols=20  Identities=15%  Similarity=0.086  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +++|+|+.|+|||||.+.++
T Consensus        24 ~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999999886

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.36  E-value=0.014  Score=49.24  Aligned_cols=23  Identities=13%  Similarity=0.073  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (255)
T PRK11300         31 QEIVSLIGPNGAGKTTVFNCLTG   53 (255)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999999975

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.36  E-value=0.014  Score=49.33  Aligned_cols=23  Identities=9%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        30 Ge~~~I~G~NGsGKSTLl~~i~G   52 (251)
T PRK09544         30 GKILTLLGPNGAGKSTLVRVVLG   52 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999986

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.36  E-value=0.013  Score=51.47  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||++.+..
T Consensus        33 Ge~~~lvG~sGsGKSTL~~~l~G   55 (326)
T PRK11022         33 GEVVGIVGESGSGKSVSSLAIMG   55 (326)
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            46999999999999999999876

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.014  Score=49.42  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241         30 RSVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999999975

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=95.35  E-value=0.013  Score=50.24  Aligned_cols=21  Identities=5%  Similarity=0.004  Sum_probs=17.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+|+|+|-||+||||++-.+.
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA   22 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIA   22 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHH
Confidence            578999999999999877653

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.34  E-value=0.015  Score=46.10  Aligned_cols=24  Identities=13%  Similarity=0.037  Sum_probs=21.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|.|||||.+.+...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999763

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=95.34  E-value=0.012  Score=47.51  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +|+|-|+.|+||||+++.+.+.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~   22 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEH   22 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988763

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK06820 type III secretion system ATPase; Validated

Probab=95.33  E-value=0.037  Score=50.44  Aligned_cols=24  Identities=8%  Similarity=0.120  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -..++|+|..|+|||||++.+...
T Consensus       163 Gqri~I~G~sG~GKStLl~~I~~~  186 (440)
T PRK06820        163 GQRIGIFAAAGVGKSTLLGMLCAD  186 (440)
T ss_pred             CCEEEEECCCCCChHHHHHHHhcc
Confidence            458899999999999999988873

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.33  E-value=0.13  Score=43.64  Aligned_cols=53  Identities=9%  Similarity=0.045  Sum_probs=32.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS  220 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~  220 (261)
                      .-.++.|.|.+|+||||++..+.... ...+=...+|+   +...  +..++...+...
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~i---S~E~--~~~~~~~r~~~~   81 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTI---SLEE--PVVRTARRLLGQ   81 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEE---Eccc--CHHHHHHHHHHH
Confidence            34688899999999999998876532 12211345677   5544  344555555443

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.33  E-value=0.014  Score=48.72  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.33  E-value=0.014  Score=48.58  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (237)
T cd03252          28 GEVVGIVGRSGSGKSTLTKLIQR   50 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999875

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.32  E-value=0.015  Score=46.36  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G   47 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAG   47 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999999987

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.32  E-value=0.015  Score=47.73  Aligned_cols=24  Identities=17%  Similarity=0.058  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.++..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        24 GEIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            479999999999999999999763

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.015  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.187  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      -.+++|+|+.|.|||||++.+.
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14245         29 KSVVAFIGPSGCGKSTFLRLFN   50 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999985

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.015  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||++.+..
T Consensus        38 Ge~~~l~G~nGsGKSTLl~~l~G   60 (259)
T PRK14274         38 NEVTAIIGPSGCGKSTFIKTLNL   60 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999863

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.31  E-value=0.015  Score=46.23  Aligned_cols=24  Identities=13%  Similarity=0.059  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999999999763

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4240 Predicted kinase [General function prediction only]

Probab=95.31  E-value=0.058  Score=44.57  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=23.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+.-+++|.|+-|+||||++-.+++.
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~   73 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRL   73 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHH
Confidence            45789999999999999999999884

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.31  E-value=0.015  Score=48.95  Aligned_cols=23  Identities=26%  Similarity=0.063  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264         29 GEVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999875

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.31  E-value=0.014  Score=48.35  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            357999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.30  E-value=0.013  Score=45.37  Aligned_cols=18  Identities=22%  Similarity=0.045  Sum_probs=16.9

Q ss_pred             EEeCCCccHHHHHHHHHc
Q 046049          168 ILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       168 IvG~gGiGKTtLa~~v~~  185 (261)
                      |+|++|+||||+|+.+..
T Consensus         1 i~G~PgsGK~t~~~~la~   18 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAK   18 (151)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHH
Confidence            689999999999999887

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.30  E-value=0.015  Score=48.59  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        47 Ge~~~i~G~NGsGKSTLl~~i~G   69 (236)
T cd03267          47 GEIVGFIGPNGAGKTTTLKILSG   69 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999999999975

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.30  E-value=0.22  Score=44.92  Aligned_cols=41  Identities=22%  Similarity=0.105  Sum_probs=32.3

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-..++|+++|-.++       ....||-.||.-|.||||-+-++.+
T Consensus        75 iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~  122 (451)
T COG0541          75 IKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK  122 (451)
T ss_pred             HHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH
Confidence            6667788888886421       3578999999999999998876655

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=95.30  E-value=0.074  Score=42.10  Aligned_cols=51  Identities=18%  Similarity=0.113  Sum_probs=30.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEeccccc-CCCCHHHHHHHHHHHh
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVS-IAYDFGKILDDIIKSV  221 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs-~~~~~~~il~~i~~~l  221 (261)
                      .-|-|+|..|+||+.+|+.+++...  .  ....+|   .+. ..++.+.+-..++...
T Consensus        23 ~pVlI~GE~GtGK~~lA~~IH~~s~--r--~~~pfi---~vnc~~~~~~~~e~~LFG~~   74 (168)
T PF00158_consen   23 LPVLITGETGTGKELLARAIHNNSP--R--KNGPFI---SVNCAALPEELLESELFGHE   74 (168)
T ss_dssp             S-EEEECSTTSSHHHHHHHHHHCST--T--TTS-EE---EEETTTS-HHHHHHHHHEBC
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHhhh--c--ccCCeE---EEehhhhhcchhhhhhhccc
Confidence            4455999999999999999999321  1  122334   332 2345555556665543

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=95.30  E-value=0.014  Score=45.08  Aligned_cols=20  Identities=10%  Similarity=0.092  Sum_probs=18.5

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+++|..|+|||||.+.+.+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            78999999999999999983

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.30  E-value=0.014  Score=49.71  Aligned_cols=23  Identities=9%  Similarity=-0.041  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         37 GKVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            46999999999999999999975

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.30  E-value=0.015  Score=46.45  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|.|||||.+.+..
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G   48 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFG   48 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.29  E-value=0.015  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.|++|||..|+|||||...+-.
T Consensus        32 GeVLgiVGESGSGKtTLL~~is~   54 (258)
T COG4107          32 GEVLGIVGESGSGKTTLLKCISG   54 (258)
T ss_pred             CcEEEEEecCCCcHHhHHHHHhc
Confidence            46999999999999999998754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.29  E-value=0.016  Score=45.49  Aligned_cols=23  Identities=17%  Similarity=0.024  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK07429 phosphoribulokinase; Provisional

Probab=95.28  E-value=0.017  Score=50.69  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.-+|+|.|..|+||||+++.+..
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~   30 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLAD   30 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999998876

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=95.28  E-value=0.014  Score=49.94  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=17.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ++|+|+|-||+||||++..+.
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA   22 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLT   22 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            578999999999999877653

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.28  E-value=0.016  Score=45.78  Aligned_cols=23  Identities=17%  Similarity=0.068  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G   50 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLR   50 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999976

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.28  E-value=0.015  Score=48.68  Aligned_cols=23  Identities=17%  Similarity=0.036  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~G   51 (241)
T PRK10895         29 GEIVGLLGPNGAGKTTTFYMVVG   51 (241)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999976

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.27  E-value=0.015  Score=48.99  Aligned_cols=23  Identities=13%  Similarity=0.108  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        30 Ge~~~l~G~nGsGKSTLl~~l~G   52 (253)
T PRK14267         30 NGVFALMGPSGCGKSTLLRTFNR   52 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999865

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.27  E-value=0.015  Score=49.59  Aligned_cols=24  Identities=8%  Similarity=-0.022  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~G   72 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINR   72 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            347999999999999999999976

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01351 adk adenylate kinases

Probab=95.26  E-value=0.014  Score=47.86  Aligned_cols=20  Identities=15%  Similarity=0.061  Sum_probs=18.2

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998865

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.26  E-value=0.015  Score=49.60  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         33 GKITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

>cd01878 HflX HflX subfamily

Probab=95.26  E-value=0.017  Score=46.92  Aligned_cols=27  Identities=7%  Similarity=0.069  Sum_probs=23.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      +....|+|+|.+|+|||||.+.+.+..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence            346799999999999999999888753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=95.25  E-value=0.014  Score=47.90  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=17.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ++|+|.|-||+||||++..+.
T Consensus         1 ~~iav~gKGGvGKTt~~~nLA   21 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLS   21 (212)
T ss_pred             CEEEEECCCcCcHHHHHHHHH
Confidence            479999999999999776553

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.25  E-value=0.015  Score=48.89  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         31 NEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999953

>cd04124 RabL2 RabL2 subfamily

Probab=95.25  E-value=0.017  Score=44.99  Aligned_cols=21  Identities=5%  Similarity=0.151  Sum_probs=18.1

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||+..+.++
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999877553

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.25  E-value=0.016  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|..|+|||||++.+..
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G   52 (252)
T PRK14256         30 NSVTAIIGPSGCGKSTVLRSINR   52 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999965

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.24  E-value=0.016  Score=49.19  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        39 Ge~~~i~G~nGsGKSTLl~~l~G   61 (260)
T PRK10744         39 NQVTAFIGPSGCGKSTLLRTFNR   61 (260)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999864

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.24  E-value=0.015  Score=49.67  Aligned_cols=23  Identities=9%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999875

>TIGR00101 ureG urease accessory protein UreG

Probab=95.24  E-value=0.017  Score=47.01  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|+|.|+.|+|||||.+.+.+
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~   23 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTR   23 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999987

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.24  E-value=0.016  Score=48.28  Aligned_cols=24  Identities=13%  Similarity=0.014  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|..|+|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          29 GKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhcc
Confidence            479999999999999999999763

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.23  E-value=0.11  Score=51.14  Aligned_cols=40  Identities=20%  Similarity=-0.042  Sum_probs=29.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+..++.|..++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        20 qe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr   59 (824)
T PRK07764         20 QEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR   59 (824)
T ss_pred             cHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3445566777765542 235578999999999999998855

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.23  E-value=0.015  Score=40.59  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++.+.|.+|+||||++..+..
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~   21 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAA   21 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999988766

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.23  E-value=0.015  Score=49.81  Aligned_cols=23  Identities=13%  Similarity=-0.029  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~i~G   55 (280)
T PRK13649         33 GSYTAFIGHTGSGKSTIMQLLNG   55 (280)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=95.23  E-value=0.015  Score=49.39  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=18.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|+|.|-||+||||++..+..
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~   23 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSA   23 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHH
Confidence            4788899999999998876543

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.23  E-value=0.016  Score=47.64  Aligned_cols=24  Identities=17%  Similarity=0.088  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G   52 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAG   52 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            356999999999999999999975

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.23  E-value=0.016  Score=48.15  Aligned_cols=23  Identities=13%  Similarity=0.017  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPR   50 (234)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.23  E-value=0.016  Score=50.40  Aligned_cols=23  Identities=17%  Similarity=-0.039  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        19 Ge~~~l~G~NGaGKSTLl~~l~G   41 (302)
T TIGR01188        19 GEVFGFLGPNGAGKTTTIRMLTT   41 (302)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-14
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 2e-15
 Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 54/267 (20%)

Query: 18  GDLSLHLIQLFREHFDKAKISLPFWQLLDSEENV-NRPDISEILEDINYFVQESEEAIDA 76
            D+       F ++FD          + D  +++ ++ +I  I+       +++      
Sbjct: 19  KDILSVFEDAFVDNFD-------CKDVQDMPKSILSKEEIDHIIM-----SKDAVSGTLR 66

Query: 77  FFINIMQQQNSESTTCKARLVG---------LHSKIIDIRNRMEQLPPSDNDFDINERRD 127
            F  ++ +Q         + V          L S I     + EQ  PS       E+RD
Sbjct: 67  LFWTLLSKQEEMV----QKFVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRD 117

Query: 128 KLIHLLIEGQPRVDESEFERG---REELFDLLIEGPPRLSVVA--ILDG-IGFDMTAFAA 181
           +L +         D   F +    R + +  L +    L      ++DG +G   T  A 
Sbjct: 118 RLYN---------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 182 DAFNNNHVKFYFDCHA-WVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLK-- 238
           D   +  V+   D    W+   + +      ++L  ++  + P          + +L+  
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 239 --KSILRDYLTDKKY---FIVLDDVFD 260
             ++ LR  L  K Y    +VL +V +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQN 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 50/263 (19%)

Query: 15  NYEGDLSLHLIQLFREHFDKAKISLPFWQLLDSEENVNRPDISEILEDI-NYFVQESEEA 73
           +   D    +I+      + A+    F +L     + + P  + +L  I    ++     
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDVMV 406

Query: 74  IDAFFIN--IMQQQNSEST----------TCKAR-LVGLHSKIIDIRNRMEQLPPSDNDF 120
           +        ++++Q  EST            K      LH  I+D  N  +      +D 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDL 464

Query: 121 DINERRDKLI------HLLIEGQPRVDESEFERGREELFDL-LIEGPPRLSVVAILDGIG 173
                 D+        HL     P          R    D   +E   ++      D   
Sbjct: 465 IPP-YLDQYFYSHIGHHLKNIEHPE----RMTLFRMVFLDFRFLEQ--KI----RHDSTA 513

Query: 174 FDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE 233
           ++ +    +      +KFY       K         + ++++ I+  +      ++I  +
Sbjct: 514 WNASGSILNTLQQ--LKFY-------KPYICDNDPKYERLVNAILDFLPKIEE-NLICSK 563

Query: 234 DYQLKKSILRDYLTDKKYFIVLD 256
                  +LR  L  +   I  +
Sbjct: 564 Y----TDLLRIALMAEDEAIFEE 582

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 20/175 (11%)

Query: 99  LHSKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPR---VDESEFERGREE---- 151
           LH    D+   +    P  +     +    +   +                  R++    
Sbjct: 76  LHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNA 135

Query: 152 LFDLLIEGPPRLSVVAI--LDGIGFDMTAFAADAFNNNHVK--FYFDCHAWVKNLSVSIA 207
           +   L +       V I  + G G   +  AA+A  ++ +    +     WV   SV   
Sbjct: 136 IQQKLSKLKGEPGWVTIHGMAGCG--KSVLAAEAVRDHSLLEGCFPGGVHWV---SVGKQ 190

Query: 208 YDFGKI--LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDK--KYFIVLDDV 258
              G +  L ++   +      S  +  + +  K  LR  +  K  +  ++LDDV
Sbjct: 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 38/223 (17%), Positives = 61/223 (27%), Gaps = 25/223 (11%)

Query: 55  DISEILEDINYFVQESEEAIDAFFINIMQQQNSESTTCKARLVGLHSKIIDIRNRMEQLP 114
              +  E I+      E  I  F     +Q +              S + D         
Sbjct: 36  FTEDHSELISKMSTRLER-IANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFA 94

Query: 115 PSDNDFDI------NERRDKLIHLLIEGQPRVDESEFERGREELFDLLIE--------GP 160
            ++ D            R  L   L+ G   V +      RE   D +I+          
Sbjct: 95  INEPDLLRPVVIAPQFSRQMLDRKLLLG--NVPKQMTCYIREYHVDRVIKKLDEMCDLDS 152

Query: 161 PRLSVVAILDGIGFDMTAFAADAFNNN--HVKFYFDCHAWV---KNLSVSIAYDFGKILD 215
             L +     G G   +  A+ A + +   +   +D   W+        S    F  IL 
Sbjct: 153 FFLFLHGRA-GSG--KSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209

Query: 216 DIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDV 258
            +       +  SV       LK+ I    +       V DDV
Sbjct: 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.7
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.6
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.39
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.06
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.8
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.78
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.72
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.69
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.64
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.48
2fna_A	357	Conserved hypothetical protein; structural genomic	98.48
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.27
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.1
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.06
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.87
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.87
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.77
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.63
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.56
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.55
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.54
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.51
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.46
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.39
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.38
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.34
2qgz_A	308	Helicase loader, putative primosome component; str	97.29
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.28
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.2
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.19
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.18
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.14
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.13
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.12
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.1
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.09
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.09
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.05
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.02
3pvs_A	447	Replication-associated recombination protein A; ma	97.02
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.01
3io5_A	333	Recombination and repair protein; storage dimer, i	96.99
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.98
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.96
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.95
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.92
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.88
3bos_A	242	Putative DNA replication factor; P-loop containing	96.88
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.84
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.83
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.83
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.82
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.82
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.82
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.82
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.8
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.79
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.77
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.77
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.77
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.75
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.74
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.73
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.72
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.72
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.72
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.71
2xxa_A	433	Signal recognition particle protein; protein trans	96.71
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.69
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.69
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.68
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.64
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.63
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.63
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.62
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.6
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.6
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.59
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.59
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.59
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.59
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.58
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.57
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.57
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.57
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.56
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.56
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.55
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.54
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.53
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.53
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.46
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.44
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.44
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.43
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.43
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.41
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.4
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.39
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.39
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.38
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.38
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.37
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.37
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.36
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.34
3co5_A	143	Putative two-component system transcriptional RES	96.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.33
1via_A	175	Shikimate kinase; structural genomics, transferase	96.33
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.32
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.32
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.31
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.31
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	96.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.29
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.29
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.28
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.28
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.28
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.28
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.27
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.27
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.27
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.27
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.26
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.25
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.25
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.24
2og2_A	359	Putative signal recognition particle receptor; nuc	96.24
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.24
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.24
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.24
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.23
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.23
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.23
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.22
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.21
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.21
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.21
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.21
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.2
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.19
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.18
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.18
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.17
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.17
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.15
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.15
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.15
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.14
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.14
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.13
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.12
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.11
3ice_A	422	Transcription termination factor RHO; transcriptio	96.11
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.11
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.1
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.1
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.1
1g6h_A	257	High-affinity branched-chain amino acid transport	96.09
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.09
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.08
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.06
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.06
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.04
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.04
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.04
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.03
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.02
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.02
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.01
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.98
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.98
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.97
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.96
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.95
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.94
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.94
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.93
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.92
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.88
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.87
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.86
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.83
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.82
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.8
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.79
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.78
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.76
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.75
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.73
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.71
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.7
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.69
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.68
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.68
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.68
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.67
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.64
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.63
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.63
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.62
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.62
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.62
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.61
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.59
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.58
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.54
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.51
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.49
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.47
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.46
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.46
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.45
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.44
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.42
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.4
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.39
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.39
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.39
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.38
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.38
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.38
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.36
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.35
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.35
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.33
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.32
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.31
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.3
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.3
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.29
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.29
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.29
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.28
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.28
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.27
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.26
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.24
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.24
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.23
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.22
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.22
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.18
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.14
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.11
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.09
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.08
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.08
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.06
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.06
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.05
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.04
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.04
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.03
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.02
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.01
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.01
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.93
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.93
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.91
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	94.91
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	94.9
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.88
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.88
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.88
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	94.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.84
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.84
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.84
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.84
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.84
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.8
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.8
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.79
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.79
3end_A	307	Light-independent protochlorophyllide reductase ir	94.78
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.78
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.77
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.76
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.76
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.73
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.73
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.69
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.69
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	94.69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.68
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.68
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.68
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	94.68
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.66
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.65
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	94.64
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.63
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.59
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.59
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.59
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.56
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.53
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.53
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.53
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.5
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.5
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	94.49
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.48
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.48
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.47
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.47
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.47
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.46
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.46
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.44
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.44
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.42
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.41
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.4
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.39
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.38
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.38
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.37
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.37
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.36
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.35
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	94.34
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.34
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.33
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.32
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.31
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.3
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.29
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.29
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.28
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.28
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.26
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.25
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.24
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.24
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.24
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.23
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.23
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.22
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	94.22
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.22
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.21
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.2
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.19
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.19
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.18
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.17
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	94.17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.15
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.14
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.14
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.12
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.12
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.1
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.1
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.09
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.09
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.06
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	94.06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.05
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.05
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.02
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.01
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.99
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.99
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.98
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	93.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.91
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	93.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	93.85
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.85
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.84
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.84
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.82
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.78
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.77
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.76
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	93.75
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	93.73
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	93.73
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	93.68
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.68
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.64
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.59
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.59
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	93.57
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	93.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.54
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.51
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.5
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.49
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	93.48
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	93.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.43
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.43
3cwq_A	209	Para family chromosome partitioning protein; alpha	93.42
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.41
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.37
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.37
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.35
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	93.32
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.28
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	93.23
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	93.2
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.19
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	93.16
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	93.16
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	93.15
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.1
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	93.1
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	93.08

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.86  E-value=2.1e-21  Score=180.21  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             hhHhHHHHHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHc--CCCcccccceeeEEecccccCCC--CHHHHHHHHHH
Q 046049          145 FERGREELFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFN--NNHVKFYFDCHAWVKNLSVSIAY--DFGKILDDIIK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~vs~~~--~~~~il~~i~~  219 (261)
                      |+.++++|.++|... +...++|+|+||||+||||||+.+|+  +.+++.+|++++||   ++++.+  ++..++..|+.
T Consensus       133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv---~vs~~~~~~~~~~~~~il~  209 (549)
T 2a5y_B          133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL---KDSGTAPKSTFDLFTDILL  209 (549)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE---ECCCCSTTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE---EECCCCCCCHHHHHHHHHH
Confidence            999999999999765 34689999999999999999999998  77899999999999   999985  89999999999


Q ss_pred             HhCCCCC--CccccCC-CHHHHHHHHHHhccCC-eEEEEeecCCC
Q 046049          220 SVMPPSR--VSVIIGE-DYQLKKSILRDYLTDK-KYFIVLDDVFD  260 (261)
Q Consensus       220 ~l~~~~~--~~~~~~~-~~~~l~~~l~~~L~~k-r~LlVlDDVW~  260 (261)
                      +++....  .....+. +.+.+...+++.|.++ ||||||||||+
T Consensus       210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~  254 (549)
T 2a5y_B          210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ  254 (549)
T ss_dssp             HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred             HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC
Confidence            9987532  1122233 6778899999999996 99999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.70  E-value=5.8e-17  Score=162.32  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=90.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCc-ccccc-eeeEEecccccCCCC--HHHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHV-KFYFD-CHAWVKNLSVSIAYD--FGKILDDIIKS  220 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~vs~~~~--~~~il~~i~~~  220 (261)
                      |+.++++|.++|...+.+.++|+|+||||+||||||+.+|++.+. ..+|. ...||   ++++.++  ....+..++..
T Consensus       129 R~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~  205 (1249)
T 3sfz_A          129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV---SIGKQDKSGLLMKLQNLCMR  205 (1249)
T ss_dssp             CHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEE---ECCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEE---EECCcCchHHHHHHHHHHHH
Confidence            999999999999876677899999999999999999999996543 55565 55699   9988654  34457778888


Q ss_pred             hCCCCCCccccCCCHHHHHHHHHHhccCC--eEEEEeecCCC
Q 046049          221 VMPPSRVSVIIGEDYQLKKSILRDYLTDK--KYFIVLDDVFD  260 (261)
Q Consensus       221 l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDDVW~  260 (261)
                      +............+.+.+...++..|.++  ||||||||||+
T Consensus       206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~  247 (1249)
T 3sfz_A          206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD  247 (1249)
T ss_dssp             HTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC
T ss_pred             hhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC
Confidence            87654322222237889999999999887  99999999997

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.69  E-value=2.2e-17  Score=159.52  Aligned_cols=112  Identities=19%  Similarity=0.090  Sum_probs=88.4

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccce-eeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC-HAWVKNLSVSIAYDFGKILDDIIKSVMP  223 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~vs~~~~~~~il~~i~~~l~~  223 (261)
                      |+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|++ ++|+   ++++.++...++..|+..+..
T Consensus       133 Re~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV---sVs~~~d~~~IL~~Ll~lL~~  208 (1221)
T 1vt4_I          133 RLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQ  208 (1221)
T ss_dssp             CHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE---ECCCSSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE---EeCCCCCHHHHHHHHHHHHhh
Confidence            9999999999998643 4789999999999999999999998788999997 8999   999999998888888775432


Q ss_pred             C---CCCc-c---ccCCCHHHHHHHHHHhc---cCCeEEEEeecCCC
Q 046049          224 P---SRVS-V---IIGEDYQLKKSILRDYL---TDKKYFIVLDDVFD  260 (261)
Q Consensus       224 ~---~~~~-~---~~~~~~~~l~~~l~~~L---~~kr~LlVlDDVW~  260 (261)
                      .   .... .   ....+.+.+...++..|   .+||+||||||||+
T Consensus       209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd  255 (1221)
T 1vt4_I          209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN  255 (1221)
T ss_dssp             HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC
T ss_pred             cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh
Confidence            1   1100 0   00114556677777766   78999999999996

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=139.99  Aligned_cols=111  Identities=21%  Similarity=0.208  Sum_probs=84.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCc-ccccc-eeeEEecccccCCCCHHHHHHHH---HH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHV-KFYFD-CHAWVKNLSVSIAYDFGKILDDI---IK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~vs~~~~~~~il~~i---~~  219 (261)
                      |+.+++.|.++|.....+.++|+|+||||+||||||..+|++..+ ..+|. .++|+   +++.. +...++..+   +.
T Consensus       129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv---~~~~~-~~~~~~~~l~~l~~  204 (591)
T 1z6t_A          129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV---SVGKQ-DKSGLLMKLQNLCT  204 (591)
T ss_dssp             CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEE---EEESC-CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEE---ECCCC-chHHHHHHHHHHHH
Confidence            999999999999765556899999999999999999999997655 78894 78999   98876 344444444   44


Q ss_pred             HhCCCCCCccccCC-CHHHHHHHHHHhccC--CeEEEEeecCCC
Q 046049          220 SVMPPSRVSVIIGE-DYQLKKSILRDYLTD--KKYFIVLDDVFD  260 (261)
Q Consensus       220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~--kr~LlVlDDVW~  260 (261)
                      .++...... .... +.+.+...+...|.+  +++||||||||+
T Consensus       205 ~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~  247 (591)
T 1z6t_A          205 RLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD  247 (591)
T ss_dssp             HHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC
T ss_pred             Hhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC
Confidence            554321100 1122 777888888888876  789999999996

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.39  E-value=5.4e-13  Score=98.10  Aligned_cols=64  Identities=11%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHhhchhhh--hcchhh---hcCCccHHHHHHHHHHHHhhhHhHHHHHHHHHHhcc
Q 046049           22 LHLIQLFREHFDKAKISLPFWQ--LLDSEE---NVNRPDISEILEDINYFVQESEEAIDAFFINIMQQQ   85 (261)
Q Consensus        22 ~~~~~~~~~~~~~L~~~l~~i~--~~d~~~---~~~~~~~~~Wl~~lr~~a~d~eD~id~~~~~~~~~~   85 (261)
                      ..+..+++++++.|+.+|..|+  +.|+++   +..++.++.|+.+||+++||+|||||+|.++.....
T Consensus        18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~~~   86 (115)
T 3qfl_A           18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDGIK   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            3567899999999999999999  345444   347999999999999999999999999999987543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.06  E-value=4.9e-10  Score=99.48  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=76.6

Q ss_pred             hhHhHHHHHHHH-hc---C-CCCeEEEEE--EeCCCccHHHHHHHHHcCCCcccc-----cc-eeeEEecccccCCCCHH
Q 046049          145 FERGREELFDLL-IE---G-PPRLSVVAI--LDGIGFDMTAFAADAFNNNHVKFY-----FD-CHAWVKNLSVSIAYDFG  211 (261)
Q Consensus       145 ~~~~~~~l~~~L-~~---~-~~~~~vi~I--vG~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~~vs~~~~~~  211 (261)
                      |+.+++.|.++| ..   + ......+.|  +|++|+|||||++.+++.  ....     |. ..+|+   ......+..
T Consensus        27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~  101 (412)
T 1w5s_A           27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYV---NAFNAPNLY  101 (412)
T ss_dssp             SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEE---EGGGCCSHH
T ss_pred             hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEE---ECCCCCCHH
Confidence            888888888887 42   2 012345555  999999999999999883  3221     23 24677   766777889


Q ss_pred             HHHHHHHHHhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCCC
Q 046049          212 KILDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVFD  260 (261)
Q Consensus       212 ~il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW~  260 (261)
                      .++..|+.+++.....    .. +...+...+...|.  +++++|||||+|.
T Consensus       102 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~  149 (412)
T 1w5s_A          102 TILSLIVRQTGYPIQV----RGAPALDILKALVDNLYVENHYLLVILDEFQS  149 (412)
T ss_dssp             HHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred             HHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence            9999999999764320    12 55667777777775  7899999999974

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.80  E-value=1.1e-08  Score=89.86  Aligned_cols=108  Identities=14%  Similarity=-0.041  Sum_probs=76.0

Q ss_pred             hhHhHHHHHHHHhc--CCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccc--------cceeeEEecccccCCC-CHHHH
Q 046049          145 FERGREELFDLLIE--GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFY--------FDCHAWVKNLSVSIAY-DFGKI  213 (261)
Q Consensus       145 ~~~~~~~l~~~L~~--~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~vs~~~-~~~~i  213 (261)
                      ++.+++.+.++|..  .....+.+.|+|++|+||||||+.+++.  ....        ....+|+   ..+... +...+
T Consensus        25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~   99 (384)
T 2qby_B           25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYV---NCREVGGTPQAV   99 (384)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEE---EHHHHCSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEE---ECccCCCCHHHH
Confidence            77778887777653  2234568999999999999999999883  3221        2345677   666656 88889


Q ss_pred             HHHHHHHhCCCCCCccccCCCHHHHHHHHHHhccCCeEEEEeecCC
Q 046049          214 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTDKKYFIVLDDVF  259 (261)
Q Consensus       214 l~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDDVW  259 (261)
                      +..++.++.+....  ..+.+...+...+...+..++.+|||||++
T Consensus       100 ~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~  143 (384)
T 2qby_B          100 LSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVD  143 (384)
T ss_dssp             HHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTH
T ss_pred             HHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHH
Confidence            99999888432220  001155667778888888777799999985

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.78  E-value=2.5e-08  Score=87.40  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=78.6

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcccc------cceeeEEecccccCCCCHHHHHHH
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFY------FDCHAWVKNLSVSIAYDFGKILDD  216 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~vs~~~~~~~il~~  216 (261)
                      ++.+++.+..+|...  ......+.|+|++|+||||||+.+++  .....      --..+|+   ..+...+...++..
T Consensus        24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~   98 (387)
T 2v1u_A           24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYV---NARHRETPYRVASA   98 (387)
T ss_dssp             CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEE---ETTTSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEE---ECCcCCCHHHHHHH
Confidence            888899999888542  23456889999999999999999987  33221      1234677   77777788999999


Q ss_pred             HHHHhCCCCCCccccCC-CHHHHHHHHHHhc--cCCeEEEEeecCC
Q 046049          217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYL--TDKKYFIVLDDVF  259 (261)
Q Consensus       217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDDVW  259 (261)
                      ++.+++.....    .. +...+...+...+  .+++.+|||||+.
T Consensus        99 l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~  140 (387)
T 2v1u_A           99 IAEAVGVRVPF----TGLSVGEVYERLVKRLSRLRGIYIIVLDEID  140 (387)
T ss_dssp             HHHHHSCCCCS----SCCCHHHHHHHHHHHHTTSCSEEEEEEETTT
T ss_pred             HHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEccHh
Confidence            99999764331    22 5666777777777  4568999999985

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.72  E-value=9.7e-08  Score=83.82  Aligned_cols=106  Identities=22%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc-ceeeEEecccccCCCCHHHHHHHHHH
Q 046049          145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF-DCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      ++.+++.|..++..    .....+.+.|+|++|+|||||++.+.+.  ..... -..+++   ..+...+...++..++.
T Consensus        22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i---~~~~~~~~~~~~~~l~~   96 (389)
T 1fnn_A           22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYI---NGFIYRNFTAIIGEIAR   96 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEE---ETTTCCSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEE---eCccCCCHHHHHHHHHH
Confidence            88888888887764    2223348999999999999999999873  32221 234566   66777788899999999


Q ss_pred             HhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049          220 SVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF  259 (261)
Q Consensus       220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW  259 (261)
                      .++.....    .. +...+...+...+.  +++.+||||++.
T Consensus        97 ~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~  135 (389)
T 1fnn_A           97 SLNIPFPR----RGLSRDEFLALLVEHLRERDLYMFLVLDDAF  135 (389)
T ss_dssp             HTTCCCCS----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGG
T ss_pred             HhCccCCC----CCCCHHHHHHHHHHHHhhcCCeEEEEEECcc
Confidence            98754321    22 56666677776664  568899999985

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.69  E-value=1.8e-08  Score=88.28  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCccccc---ceeeEEecccccCCCCHHHHHHHHHH
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF---DCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      |+.+++.|.+++...  ......+.|+|++|+|||||++.+++  .....|   ...+|+   ..+...+...++..++.
T Consensus        25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~i~~   99 (386)
T 2qby_A           25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYI---NTRQIDTPYRVLADLLE   99 (386)
T ss_dssp             CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEE---EHHHHCSHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEE---ECCCCCCHHHHHHHHHH
Confidence            889999999888642  23456889999999999999999988  343333   234667   66666677888888888


Q ss_pred             HhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049          220 SVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF  259 (261)
Q Consensus       220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW  259 (261)
                      +++.....    .. +...+...+...+.  +++.+||||+++
T Consensus       100 ~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~  138 (386)
T 2qby_A          100 SLDVKVPF----TGLSIAELYRRLVKAVRDYGSQVVIVLDEID  138 (386)
T ss_dssp             TTSCCCCS----SSCCHHHHHHHHHHHHHTCCSCEEEEEETHH
T ss_pred             HhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence            87654321    22 56666666777664  458999999975

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.64  E-value=6.6e-08  Score=83.51  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC------CCHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA------YDFGKILDDII  218 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~------~~~~~il~~i~  218 (261)
                      |+.+.+.|.+++..+    +++.|+|++|+|||||++.+.+..      . .+|+   .....      .+...++..+.
T Consensus        17 R~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~---~~~~~~~~~~~~~~~~~~~~l~   82 (350)
T 2qen_A           17 REEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILI---DCRELYAERGHITREELIKELQ   82 (350)
T ss_dssp             CHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEE---EHHHHHHTTTCBCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEE---EeecccccccCCCHHHHHHHHH
Confidence            999999999988653    689999999999999999998742      1 5666   55432      25667777776


Q ss_pred             HHhCCC------------C-CCccccCC-CHHHHHHHHHHhccC-CeEEEEeecCCC
Q 046049          219 KSVMPP------------S-RVSVIIGE-DYQLKKSILRDYLTD-KKYFIVLDDVFD  260 (261)
Q Consensus       219 ~~l~~~------------~-~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDDVW~  260 (261)
                      ..+...            . ........ +..++...+...+.. ++++|||||++.
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~  139 (350)
T 2qen_A           83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY  139 (350)
T ss_dssp             HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGG
T ss_pred             HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHH
Confidence            665430            0 00000012 566677777766643 389999999853

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.48  E-value=7.3e-07  Score=76.63  Aligned_cols=106  Identities=8%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             hhHhHHHHHHHHhcC--CCCeEEEEEEeCCCccHHHHHHHHHcCCCcc---c---ccceeeEEecccccCCCCHHHHHHH
Q 046049          145 FERGREELFDLLIEG--PPRLSVVAILDGIGFDMTAFAADAFNNNHVK---F---YFDCHAWVKNLSVSIAYDFGKILDD  216 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~--~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~---~---~F~~~~wv~~~~vs~~~~~~~il~~  216 (261)
                      |+++.+.|...|...  ......+-|+|++|+|||++++.|.+.-.-.   .   .| ..+.|   ......+...++..
T Consensus        25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~I---Nc~~~~t~~~~~~~  100 (318)
T 3te6_A           25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHI---DALELAGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEE---ETTCCC--HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEE---eccccCCHHHHHHH
Confidence            889999988877542  2346778999999999999999998732111   1   12 23455   44556678899999


Q ss_pred             HHHHhCCCCCCccccCC-CHHHHHHHHHHh--ccCCeEEEEeecC
Q 046049          217 IIKSVMPPSRVSVIIGE-DYQLKKSILRDY--LTDKKYFIVLDDV  258 (261)
Q Consensus       217 i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~--L~~kr~LlVlDDV  258 (261)
                      |++++.+....    .. ..+.+...+...  -.++.++|+||.+
T Consensus       101 I~~~L~g~~~~----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~  141 (318)
T 3te6_A          101 IWFAISKENLC----GDISLEALNFYITNVPKAKKRKTLILIQNP  141 (318)
T ss_dssp             HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred             HHHHhcCCCCC----chHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence            99999765320    12 444444444332  2467899999986

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.48  E-value=5.6e-07  Score=77.74  Aligned_cols=100  Identities=12%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-----CCHHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-----YDFGKILDDIIK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-----~~~~~il~~i~~  219 (261)
                      |+.+.+.|.+ +..     +++.|+|++|+|||||++.+.+.  ...   ..+|+   .....     .+...++..+..
T Consensus        18 R~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~---~~~~~~~~~~~~~~~~~~~l~~   83 (357)
T 2fna_A           18 REKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYL---DLRKFEERNYISYKDFLLELQK   83 (357)
T ss_dssp             CHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEE---EGGGGTTCSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEE---EchhhccccCCCHHHHHHHHHH
Confidence            8999999988 643     59999999999999999999874  222   24677   65432     344555555444


Q ss_pred             HhC-------------CCC-----CC-cccc-----CC-CHHHHHHHHHHhccCCeEEEEeecCC
Q 046049          220 SVM-------------PPS-----RV-SVII-----GE-DYQLKKSILRDYLTDKKYFIVLDDVF  259 (261)
Q Consensus       220 ~l~-------------~~~-----~~-~~~~-----~~-~~~~l~~~l~~~L~~kr~LlVlDDVW  259 (261)
                      .+.             ...     .. ....     .. ....+...+.+.-. ++++|||||+.
T Consensus        84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~  147 (357)
T 2fna_A           84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQ  147 (357)
T ss_dssp             HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGG
T ss_pred             HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHH
Confidence            331             000     00 0000     12 55566666655433 48999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.27  E-value=2.6e-06  Score=68.04  Aligned_cols=53  Identities=13%  Similarity=-0.019  Sum_probs=36.7

Q ss_pred             hhHhHHHHHHHHhcCCCC--eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          145 FERGREELFDLLIEGPPR--LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~--~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      .....+.+..++......  ...+.|+|++|+||||||+.+++  .........+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~   88 (202)
T 2w58_A           34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIV   88 (202)
T ss_dssp             HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEE
Confidence            555566677777654322  26788999999999999999998  333333455666

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.17  E-value=6.4e-06  Score=65.87  Aligned_cols=39  Identities=13%  Similarity=-0.034  Sum_probs=32.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+.+++....  ...+.|+|++|+||||||+.+.+
T Consensus        22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence            7778888888887653  33389999999999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.10  E-value=4e-06  Score=65.47  Aligned_cols=39  Identities=10%  Similarity=0.066  Sum_probs=32.6

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+.+++....  ...+.|+|++|+||||||+.+.+
T Consensus        27 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           27 RDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            7888899999886533  45578999999999999999877

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.06  E-value=1e-05  Score=65.39  Aligned_cols=40  Identities=18%  Similarity=-0.043  Sum_probs=33.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.|..++.... ..+.+.|+|++|+||||||+.+++
T Consensus        28 ~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           28 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             CHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            7788888888886543 235788999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.87  E-value=3.4e-05  Score=60.34  Aligned_cols=41  Identities=10%  Similarity=0.016  Sum_probs=30.1

Q ss_pred             hhHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....+.+.+++..-. .....+.|+|++|+|||||++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4555566666554322 2357899999999999999999987

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.87  E-value=2.5e-05  Score=66.48  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=32.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+.+++..+.  .+.+.++|++|+||||+|+.+.+
T Consensus        26 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           26 NKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             CTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence            7777888888887653  23388999999999999999987

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.77  E-value=3.7e-05  Score=59.72  Aligned_cols=39  Identities=13%  Similarity=0.051  Sum_probs=32.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+.+.+....  ...+.|+|++|+||||||+.+.+
T Consensus        27 ~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           27 RDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence            7788888888886532  44568999999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.63  E-value=7.3e-05  Score=62.70  Aligned_cols=42  Identities=12%  Similarity=0.068  Sum_probs=30.3

Q ss_pred             hhHhHHHHHHHHhc---C--------CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE---G--------PPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..++.|.+.+..   .        -....-+.|+|++|+||||||+.+.+.
T Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            66666666665532   1        123456889999999999999999883

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.56  E-value=0.0004  Score=55.54  Aligned_cols=88  Identities=8%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC------ccccCC--
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV------SVIIGE--  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~------~~~~~~--  233 (261)
                      .-.++.|+|++|+|||||+..+..     ..-...+|+   +....++...+.. +...++.....      ......  
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYV---DTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFK   89 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEE---ESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEE---ECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHH
Confidence            456999999999999999998876     112356777   6666556655443 44433321000      000011  


Q ss_pred             CHHHHHHHHHHhccCCeEEEEeecC
Q 046049          234 DYQLKKSILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       234 ~~~~l~~~l~~~L~~kr~LlVlDDV  258 (261)
                      +.......++..+..+.-+||||.+
T Consensus        90 ~~~~~~~~~~~l~~~~~~lliiD~~  114 (220)
T 2cvh_A           90 EQRRVIGSLKKTVDSNFALVVVDSI  114 (220)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEEECC
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEcCc
Confidence            2234555566666545678999975

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.55  E-value=8.1e-05  Score=63.77  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccc--cCCCCHHHHHHHHHHHhCCCCCCccccCCCHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSV--SIAYDFGKILDDIIKSVMPPSRVSVIIGEDYQLKKS  240 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~v--s~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~l~~  240 (261)
                      -+++.|+|++|+||||||..+...     .-...+|+   +.  +...+.               .     ..+.+....
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyI---s~~~eE~v~~---------------~-----~~~le~~l~  174 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYA---TVRFGEPLSG---------------Y-----NTDFNVFVD  174 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCE---EEEBSCSSTT---------------C-----BCCHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEE---Eecchhhhhh---------------h-----hcCHHHHHH
Confidence            456789999999999999998763     22244677   65  222110               0     115566666


Q ss_pred             HHHHhccCCeEEEEeecC
Q 046049          241 ILRDYLTDKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~~kr~LlVlDDV  258 (261)
                      .+.+.+...+ +||+|++
T Consensus       175 ~i~~~l~~~~-LLVIDsI  191 (331)
T 2vhj_A          175 DIARAMLQHR-VIVIDSL  191 (331)
T ss_dssp             HHHHHHHHCS-EEEEECC
T ss_pred             HHHHHHhhCC-EEEEecc
Confidence            6777776555 9999986

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.54  E-value=0.00018  Score=59.27  Aligned_cols=23  Identities=17%  Similarity=0.059  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.++|++|+|||+||+.+.+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34577999999999999999988

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.51  E-value=0.0001  Score=62.69  Aligned_cols=39  Identities=15%  Similarity=0.052  Sum_probs=32.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+..++..+.  ...+.++|++|+||||+|+.+++
T Consensus        30 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           30 QEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             CHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence            6777888888887653  33489999999999999999987

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.46  E-value=0.00017  Score=64.72  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+........ ....+.|+|++|+||||||+.+.+
T Consensus       117 ~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          117 YHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             HHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHH
Confidence            334444443322 267889999999999999999988

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.42  E-value=0.00028  Score=60.39  Aligned_cols=37  Identities=19%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+..++.........+.|+|++|+||||||+.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3344444443322456788999999999999999987

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.41  E-value=0.00068  Score=57.50  Aligned_cols=25  Identities=20%  Similarity=0.056  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....+.++|++|+||||||+.+.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            3467889999999999999999983

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.40  E-value=0.00016  Score=57.94  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=29.5

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..++|.+.+........+|+|+|+.|+|||||++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344556666554334578999999999999999998865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.39  E-value=0.00065  Score=58.31  Aligned_cols=24  Identities=8%  Similarity=0.054  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+-+.++|++|+|||+||+.+.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            467889999999999999999983

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.38  E-value=0.00045  Score=60.17  Aligned_cols=88  Identities=19%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~  239 (261)
                      +.-.++.|.|++|+|||||+..+...  ....=...+|+   +....++..     .+++++.......-... +.++..
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyI---d~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l  128 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFI---DAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQAL  128 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE---ecccccchH-----HHHHcCCchhhhhhhhccCHHHHH
Confidence            34579999999999999999988763  22111245788   776666654     45556544321101112 566666


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ..+...++ .+--++|+|.+
T Consensus       129 ~~~~~l~~~~~~dlvVIDSi  148 (356)
T 3hr8_A          129 EIVDELVRSGVVDLIVVDSV  148 (356)
T ss_dssp             HHHHHHHHTSCCSEEEEECT
T ss_pred             HHHHHHhhhcCCCeEEehHh
Confidence            66666554 44568888976

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.34  E-value=0.0015  Score=56.63  Aligned_cols=38  Identities=21%  Similarity=0.160  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...+...+.......+.+-|+|++|+|||+||+.+.+.
T Consensus        56 l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           56 AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            44466666655433468899999999999999999873

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.29  E-value=0.00028  Score=60.23  Aligned_cols=41  Identities=10%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             hhHhHHHHHHHHhcCCC-CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPP-RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~-~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +......+.+++..-+. ...-+.++|++|+|||+||..+.+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            44455556666654322 246788999999999999999988

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.28  E-value=0.00027  Score=60.56  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             hhHhHHHHHHHHh----------cCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLI----------EGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~----------~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|.+.+.          ......+-+-++|++|+|||+||+.+.+
T Consensus        23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            5666666666552          1112345688999999999999999988

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.25  E-value=0.00046  Score=54.93  Aligned_cols=41  Identities=12%  Similarity=-0.035  Sum_probs=32.0

Q ss_pred             hhHhHHHHHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.|.+.+... .....+|+|.|+.|+|||||++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345667777777653 24568999999999999999998865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.20  E-value=0.00048  Score=58.29  Aligned_cols=24  Identities=13%  Similarity=-0.006  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+.|+|++|+|||+||+.+.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            455789999999999999997766

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.19  E-value=0.00064  Score=62.19  Aligned_cols=42  Identities=12%  Similarity=-0.021  Sum_probs=33.4

Q ss_pred             hhHhHHHHHHHHhcCC---------------CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGP---------------PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~---------------~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..++.|.++|....               ...+.+.|+|++|+||||+|+.+.+.
T Consensus        44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            7778888888886410               13468899999999999999999883

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.18  E-value=0.00058  Score=57.51  Aligned_cols=23  Identities=13%  Similarity=0.034  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.|+|++|+||||||+.+.+
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            46788999999999999999988

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.14  E-value=0.0012  Score=57.28  Aligned_cols=87  Identities=18%  Similarity=0.081  Sum_probs=52.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~  240 (261)
                      .-.++.|.|++|+||||||..+...  ....=...+|+   +....++..     ..+.++.......-... +.++...
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi---~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~  129 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFI---DAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALE  129 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEE---ECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence            4578999999999999999887652  11111356788   777776653     24455543221000112 5566665


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .+..... .+--+||+|.+
T Consensus       130 ~~~~l~~~~~~~lIVIDsl  148 (349)
T 2zr9_A          130 IADMLVRSGALDIIVIDSV  148 (349)
T ss_dssp             HHHHHHTTTCCSEEEEECG
T ss_pred             HHHHHHhcCCCCEEEEcCh
Confidence            5555553 34568899965

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.14  E-value=0.00086  Score=55.29  Aligned_cols=21  Identities=19%  Similarity=0.074  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+.|+|++|+||||||+.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            478999999999999999987

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.13  E-value=0.00047  Score=60.04  Aligned_cols=41  Identities=7%  Similarity=0.014  Sum_probs=29.1

Q ss_pred             hhHhHHHHHHHHhc----C------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE----G------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|.+.+..    .      .....-+.|+|++|+|||+||+.+.+
T Consensus        89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            55556666555431    0      12346788999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.13  E-value=0.0017  Score=52.69  Aligned_cols=94  Identities=4%  Similarity=-0.004  Sum_probs=53.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC---c-cccCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV---S-VIIGE  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~---~-~~~~~  233 (261)
                      .-.++.|+|++|+|||||+..+........    .-...+|+   +....++...+. .++..++.....   . .-...
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i---~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI---DTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE---ESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEE---ECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEec
Confidence            346999999999999999998876321111    12456788   666655555443 344555433210   0 00011


Q ss_pred             -CHHH---HHHHHHHhcc-CCeEEEEeecCC
Q 046049          234 -DYQL---KKSILRDYLT-DKKYFIVLDDVF  259 (261)
Q Consensus       234 -~~~~---l~~~l~~~L~-~kr~LlVlDDVW  259 (261)
                       +..+   +...+.+.+. .+--+||||.+-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~  129 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSAT  129 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence             2222   3334555553 466789999863

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.12  E-value=0.0015  Score=54.31  Aligned_cols=35  Identities=20%  Similarity=0.051  Sum_probs=26.8

Q ss_pred             HHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          152 LFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       152 l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.+.+... .....-+-|+|++|+|||+||+.+.+.
T Consensus        52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45555422 345678889999999999999999883

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.10  E-value=0.00065  Score=57.50  Aligned_cols=27  Identities=11%  Similarity=0.048  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          159 GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       159 ~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ......+|+|+|+.|+||||||+.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999998865

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.09  E-value=0.0043  Score=53.67  Aligned_cols=94  Identities=4%  Similarity=-0.000  Sum_probs=56.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-------cc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-------SV  229 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-------~~  229 (261)
                      +.-.++.|+|++|+||||||..+........    .-...+|+   +....++...+.. ++..++.....       ..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi---~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~  195 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI---DTENTFRPDRLRD-IADRFNVDHDAVLDNVLYAR  195 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE---ESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE---ECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEee
Confidence            4567999999999999999998766322211    12356888   8888777776554 44555443210       00


Q ss_pred             ccCC-CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          230 IIGE-DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       230 ~~~~-~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                      .... ...++...+...+.   .+--|||+|.+
T Consensus       196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl  228 (343)
T 1v5w_A          196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI  228 (343)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence            0011 22234444555553   45679999975

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.09  E-value=0.0016  Score=56.94  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=53.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~  240 (261)
                      .-.++-|.|.+|+||||||..+...  ....=...+|+   +....++..     ....++.......-... +.+++..
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi---~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~  142 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFI---DAEHALDPV-----YARALGVNTDELLVSQPDNGEQALE  142 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEE---ECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHH
Confidence            3468888999999999999877652  21112367888   887776654     24455443221000012 5666767


Q ss_pred             HHHHhccC-CeEEEEeecC
Q 046049          241 ILRDYLTD-KKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~~-kr~LlVlDDV  258 (261)
                      .+...++. +--+||+|.+
T Consensus       143 ~l~~l~~~~~~~lVVIDsl  161 (366)
T 1xp8_A          143 IMELLVRSGAIDVVVVDSV  161 (366)
T ss_dssp             HHHHHHTTTCCSEEEEECT
T ss_pred             HHHHHHhcCCCCEEEEeCh
Confidence            77666643 4458999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.05  E-value=0.00029  Score=54.06  Aligned_cols=20  Identities=25%  Similarity=0.167  Sum_probs=18.8

Q ss_pred             EEEEEEeCCCccHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v  183 (261)
                      .+|.|.|++|+||||+|+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999998

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.02  E-value=0.0017  Score=55.69  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccc----cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC---ccc-cCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFY----FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV---SVI-IGE  233 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~---~~~-~~~  233 (261)
                      .-.++.|+|++|+||||||..+.........    =...+|+   +....++...+.. ++..++.....   .-. ...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi---~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~  181 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI---DTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRA  181 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE---ESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE---ECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeC
Confidence            3468999999999999999887653221111    1356888   8888787776653 45555543210   000 011


Q ss_pred             -CHH---HHHHHHHHhcc--CCeEEEEeecC
Q 046049          234 -DYQ---LKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~---~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                       +.+   ++...+...++  .+--+||+|.+
T Consensus       182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl  212 (324)
T 2z43_A          182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSV  212 (324)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence             223   34455555653  45678999975

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.02  E-value=0.00055  Score=61.54  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          150 EELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       150 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|...+..+.  ...+.++|++|+||||||+.+.+
T Consensus        39 ~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           39 KPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             SHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence            45555565443  46788999999999999999988

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.01  E-value=0.0013  Score=57.35  Aligned_cols=87  Identities=13%  Similarity=-0.023  Sum_probs=51.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~  240 (261)
                      .-.++.|.|.+|+||||||..+...  ....=...+|+   +....++..     .+..++.......-... +.+++.+
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi---d~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~  131 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFI---DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE  131 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEE---eCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHH
Confidence            4568999999999999999887652  21111357788   877777643     23455443221000011 4555555


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .+....+ .+--+||+|.+
T Consensus       132 ~~~~l~~~~~~~lVVIDsl  150 (356)
T 1u94_A          132 ICDALARSGAVDVIVVDSV  150 (356)
T ss_dssp             HHHHHHHHTCCSEEEEECG
T ss_pred             HHHHHHhccCCCEEEEcCH
Confidence            5554442 34458899965

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.99  E-value=0.0033  Score=53.75  Aligned_cols=84  Identities=5%  Similarity=0.017  Sum_probs=52.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcccc--cceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHH-HH
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFY--FDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLK-KS  240 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l-~~  240 (261)
                      ++-|.|++|+|||||+..+...  ....  =...+||   +-...++..     .+++++...+..--... +.++. ..
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyI---d~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~   99 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFY---DSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID   99 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEE---ESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEE---eccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence            7899999999999998877652  2222  1356888   877777753     36777765432100111 45555 33


Q ss_pred             HHHHh--c-cCCeEEEEeecC
Q 046049          241 ILRDY--L-TDKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~--L-~~kr~LlVlDDV  258 (261)
                      .+...  + .++--|||+|-|
T Consensus       100 i~~~l~~i~~~~~~lvVIDSI  120 (333)
T 3io5_A          100 MVNQLDAIERGEKVVVFIDSL  120 (333)
T ss_dssp             HHHHHHTCCTTCCEEEEEECS
T ss_pred             HHHHHHHhhccCceEEEEecc
Confidence            33332  3 456789999976

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.98  E-value=0.00047  Score=54.00  Aligned_cols=24  Identities=13%  Similarity=0.030  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|++|+|||||++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            478999999999999999999773

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.96  E-value=0.0031  Score=53.87  Aligned_cols=93  Identities=11%  Similarity=0.120  Sum_probs=56.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCccc---------cc-----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF---------YF-----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV  227 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~  227 (261)
                      .-.++-|.|.+|+||||||..+..+.....         ..     ...+|+   +....++...+.+ ++..++.....
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi---~~e~~~~~~~l~~-~~~~~g~~~~~  172 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYI---DTEGTFRPERIMQ-MAEHAGIDGQT  172 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEE---ESSSCCCHHHHHH-HHHHHTCCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEE---ECCCCCCHHHHHH-HHHHcCCCHHH
Confidence            457999999999999999988765322111         11     466888   8888887777664 34555543210


Q ss_pred             ---c-cccCC-CHH---HHHHHHHHhcc--CCeEEEEeecC
Q 046049          228 ---S-VIIGE-DYQ---LKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       228 ---~-~~~~~-~~~---~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                         . .-... +.+   ++...+...+.  .+--+||+|.+
T Consensus       173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl  213 (322)
T 2i1q_A          173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL  213 (322)
T ss_dssp             HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred             HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence               0 00011 333   34455666664  35568999975

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.95  E-value=0.0033  Score=54.40  Aligned_cols=40  Identities=18%  Similarity=-0.043  Sum_probs=32.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.+...+..+. ..+.+.|+|++|+||||+|+.+.+
T Consensus        21 ~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           21 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             CHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            7777888888886543 235678999999999999999876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.92  E-value=0.00069  Score=58.96  Aligned_cols=22  Identities=14%  Similarity=0.061  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +-|.++|++|+|||+||+.+.+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4578899999999999999988

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.88  E-value=0.0014  Score=57.62  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=29.4

Q ss_pred             hhHhHHHHHHHHhc----C------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE----G------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|.+++..    .      .....-+.|+|++|+|||+||+.+.+
T Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            56666666665521    1      11246788999999999999999977

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.88  E-value=0.0011  Score=53.57  Aligned_cols=38  Identities=8%  Similarity=-0.040  Sum_probs=28.3

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...+.+..++...  ....+.|+|++|+||||||+.+.+
T Consensus        37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence            34455555555443  356788999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.84  E-value=0.0033  Score=53.23  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++++|++|+||||++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999988754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.83  E-value=0.00059  Score=53.30  Aligned_cols=23  Identities=9%  Similarity=0.143  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0022  Score=57.17  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=30.0

Q ss_pred             hhHhHHHHHHHHhc-----------CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE-----------GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.+++|.+.+.-           +-...+=|-++|++|+|||+||+.+.+
T Consensus       177 l~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          177 LDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            66666666665421           112345688999999999999999988

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.82  E-value=0.0011  Score=55.96  Aligned_cols=39  Identities=13%  Similarity=-0.034  Sum_probs=30.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+.+++..+.  ...+.++|++|+||||+|+.+.+
T Consensus        22 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           22 QDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             CHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence            6666777777765532  33388999999999999999877

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.82  E-value=0.00058  Score=52.37  Aligned_cols=22  Identities=9%  Similarity=-0.059  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+++.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0024  Score=57.28  Aligned_cols=41  Identities=17%  Similarity=0.086  Sum_probs=29.7

Q ss_pred             hhHhHHHHHHHHh----c-------CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLI----E-------GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~----~-------~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.+++|.+.+.    .       +-...+=|-++|++|+|||+||+.+.+
T Consensus       214 l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence            6666666665432    1       113456677999999999999999988

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0016  Score=58.13  Aligned_cols=41  Identities=15%  Similarity=0.099  Sum_probs=29.9

Q ss_pred             hhHhHHHHHHHH----hcC-------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLL----IEG-------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L----~~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.+++|.+.+    ...       -...+=|-++|++|+|||+||+.+.+
T Consensus       186 l~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            666666666543    221       13356778999999999999999988

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.80  E-value=0.00072  Score=50.84  Aligned_cols=22  Identities=14%  Similarity=-0.094  Sum_probs=19.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|-|+|++|+|||++|+.+++.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999884

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.80  E-value=0.00068  Score=52.53  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++..+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            47899999999999999997654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.79  E-value=0.00058  Score=52.84  Aligned_cols=22  Identities=5%  Similarity=0.027  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999877

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0026  Score=56.81  Aligned_cols=24  Identities=17%  Similarity=0.004  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+=|-++|++|+|||+||+.+.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            356788999999999999999988

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.77  E-value=0.00078  Score=52.04  Aligned_cols=22  Identities=9%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.77  E-value=0.00074  Score=53.45  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            35899999999999999998875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.77  E-value=0.00085  Score=53.22  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|+|+.|+|||||++.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999998876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.0007  Score=53.67  Aligned_cols=23  Identities=9%  Similarity=0.065  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|+|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.76  E-value=0.0006  Score=52.50  Aligned_cols=22  Identities=5%  Similarity=0.125  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|+|+.|+|||||++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.75  E-value=0.00095  Score=53.20  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+|+.|+|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998866

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0021  Score=56.74  Aligned_cols=23  Identities=17%  Similarity=0.042  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+=+-++|++|+|||.||+.+.+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHH
Confidence            45677999999999999999988

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.73  E-value=0.0084  Score=50.96  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=31.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+..+.+++..+. ..+++-+.|++|+||||+|+.+.+
T Consensus        31 ~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           31 PAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             CHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence            5666777888887543 346788889999999999999987

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.72  E-value=0.0064  Score=52.71  Aligned_cols=94  Identities=10%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCccccc----ceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC-------cc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF----DCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV-------SV  229 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~-------~~  229 (261)
                      +.-.++.|+|++|+|||||+..+..........    ...+|+   +....+....+ ..+.+..+.....       ..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i---~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~  204 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI---DTENTFRPERI-REIAQNRGLDPDEVLKHIYVAR  204 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE---ESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE---eCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEe
Confidence            346899999999999999999887632111111    234788   66555544443 3344444332110       00


Q ss_pred             ccCC-CHHHHHHHHHHhcc------CCeEEEEeecC
Q 046049          230 IIGE-DYQLKKSILRDYLT------DKKYFIVLDDV  258 (261)
Q Consensus       230 ~~~~-~~~~l~~~l~~~L~------~kr~LlVlDDV  258 (261)
                      .... ...++...+...+.      .+-=|||||.+
T Consensus       205 ~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~  240 (349)
T 1pzn_A          205 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL  240 (349)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred             cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence            0111 23344455555553      45678999975

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.72  E-value=0.0024  Score=57.27  Aligned_cols=42  Identities=14%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             hhHhHHHHHHHHhc----------CCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE----------GPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..++.|.+.+..          .....+-+.++|++|+|||+||+.+.+.
T Consensus       139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            56666666665521          0123467889999999999999999983

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.72  E-value=0.0012  Score=59.99  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.|+|++|+|||+||+.+.+
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHH
Confidence            45588999999999999999987

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.71  E-value=0.00093  Score=52.33  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999975

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.71  E-value=0.0077  Score=53.77  Aligned_cols=40  Identities=20%  Similarity=0.036  Sum_probs=29.5

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..--.++|.++|....       ....+|.++|.+|+||||++..+.
T Consensus        75 ~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           75 VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4455666777764321       347899999999999999888775

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.69  E-value=0.0082  Score=50.84  Aligned_cols=23  Identities=17%  Similarity=0.054  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999887753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.69  E-value=0.00088  Score=52.41  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++|+|+.|+|||||++.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.68  E-value=0.0011  Score=51.22  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+|+|+|+.|+||||+++.+..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999998865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.67  E-value=0.0011  Score=51.81  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+++.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.64  E-value=0.0014  Score=52.17  Aligned_cols=25  Identities=12%  Similarity=0.088  Sum_probs=22.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|+|++|+|||||++.+..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999877

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.64  E-value=0.0024  Score=53.88  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +....++++.-++..   .....+|.|.|++|+||||+|+.+..
T Consensus        12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            556666666666543   23467899999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.63  E-value=0.0011  Score=52.62  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+|+.|+|||||++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.62  E-value=0.0013  Score=51.37  Aligned_cols=23  Identities=4%  Similarity=0.010  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+++.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.61  E-value=0.0022  Score=55.24  Aligned_cols=25  Identities=20%  Similarity=0.062  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+++|+|+.|+||||+++.+..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.60  E-value=0.0011  Score=52.39  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|+|+.|+|||||++.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.60  E-value=0.0014  Score=51.65  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=22.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+|+|.|+.|+||||+++.+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999999877

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.59  E-value=0.0011  Score=51.71  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|+|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999998865

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.59  E-value=0.0018  Score=58.49  Aligned_cols=21  Identities=14%  Similarity=0.085  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+.++|++|+||||||+.+.+
T Consensus        51 gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            377999999999999999988

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.59  E-value=0.001  Score=52.41  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998876

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.59  E-value=0.0011  Score=53.33  Aligned_cols=22  Identities=14%  Similarity=0.099  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|+|+.|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.58  E-value=0.0012  Score=52.69  Aligned_cols=23  Identities=9%  Similarity=0.117  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|+|+.|+|||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999976

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.57  E-value=0.004  Score=59.73  Aligned_cols=25  Identities=16%  Similarity=0.046  Sum_probs=22.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+-|-++|++|+|||+||+.+.+.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999999983

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.57  E-value=0.0012  Score=52.22  Aligned_cols=22  Identities=14%  Similarity=0.138  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|+|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.57  E-value=0.0023  Score=52.76  Aligned_cols=41  Identities=12%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             hhHhHHHHHHHHhcCC---CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP---PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~---~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++...+.++..+..+.   ....+|.|+|++|+||||+|+.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5666666666655432   3467999999999999999999866

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.56  E-value=0.0039  Score=60.51  Aligned_cols=39  Identities=10%  Similarity=0.141  Sum_probs=32.6

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..+..+++.|....  ..-+.++|++|+||||||+.+.+
T Consensus       175 r~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          175 RDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             CHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            8899999999887643  23467899999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.56  E-value=0.0013  Score=52.16  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|+|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.55  E-value=0.0013  Score=52.44  Aligned_cols=23  Identities=9%  Similarity=-0.084  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46999999999999999998854

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.001  Score=52.76  Aligned_cols=23  Identities=4%  Similarity=0.066  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998865

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.54  E-value=0.001  Score=52.88  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.53  E-value=0.0015  Score=55.75  Aligned_cols=25  Identities=8%  Similarity=0.092  Sum_probs=22.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|+|+.|+|||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4568999999999999999998865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.53  E-value=0.0013  Score=51.25  Aligned_cols=22  Identities=23%  Similarity=0.181  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.52  E-value=0.0088  Score=57.16  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=32.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..+..+++.|....  ..-+.++|++|+||||+|+.+.+
T Consensus       191 r~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          191 REKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             CHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence            8888999999886543  34457999999999999998876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.48  E-value=0.0015  Score=53.56  Aligned_cols=22  Identities=18%  Similarity=0.048  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..+|+|+|++|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999999998

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.46  E-value=0.0011  Score=50.27  Aligned_cols=23  Identities=4%  Similarity=-0.055  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..+.|+|+.|+|||||++.+++
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.46  E-value=0.011  Score=52.10  Aligned_cols=58  Identities=3%  Similarity=-0.035  Sum_probs=37.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCccc----ccceeeEEecccccCCCCHHHHHHHHHHHhCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKF----YFDCHAWVKNLSVSIAYDFGKILDDIIKSVMP  223 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~  223 (261)
                      .-.++.|+|++|+|||||+..+.-......    .-...+|+   +....+....+ ..+.+.++.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyi---d~E~~~~~~rl-~~~a~~~gl  238 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI---DTEGTFRPVRL-VSIAQRFGL  238 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE---ESSSCCCHHHH-HHHHHHTTC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEE---eCCCccCHHHH-HHHHHHcCC
Confidence            357999999999999999996642111111    22357788   76666666554 336666654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.46  E-value=0.0017  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.44  E-value=0.002  Score=49.44  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++++|+.|+|||||.+.+..
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.44  E-value=0.0019  Score=51.06  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|+.|+||||+++.+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.44  E-value=0.0012  Score=52.43  Aligned_cols=24  Identities=8%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|+|++|+|||||++.+..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.44  E-value=0.0017  Score=50.91  Aligned_cols=23  Identities=9%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.43  E-value=0.002  Score=52.82  Aligned_cols=24  Identities=8%  Similarity=0.188  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|.|+.|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.43  E-value=0.0017  Score=53.69  Aligned_cols=22  Identities=14%  Similarity=-0.055  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|+|++|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999998865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.41  E-value=0.0016  Score=49.89  Aligned_cols=24  Identities=8%  Similarity=0.128  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|+.|+||||+++.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.40  E-value=0.0014  Score=50.88  Aligned_cols=23  Identities=13%  Similarity=0.186  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45788999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.39  E-value=0.002  Score=50.14  Aligned_cols=23  Identities=17%  Similarity=-0.002  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.+.|++|+||||+++.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.39  E-value=0.0015  Score=52.71  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.39  E-value=0.0019  Score=50.53  Aligned_cols=24  Identities=17%  Similarity=-0.003  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....|.|+|+.|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.38  E-value=0.002  Score=50.31  Aligned_cols=24  Identities=21%  Similarity=0.034  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.38  E-value=0.0041  Score=52.87  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=28.4

Q ss_pred             hhHhHHHHHHHHhcCC---------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP---------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~---------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....++|.+.+....         ....+++|+|+.|+||||+++.+..
T Consensus        73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4444555555553211         2457999999999999999998854

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.37  E-value=0.0019  Score=55.29  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=30.1

Q ss_pred             hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+..++..   .......+.|+|++|+|||+||+.+.+
T Consensus        34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            55556666666643   123345688999999999999999977

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.37  E-value=0.0018  Score=53.45  Aligned_cols=22  Identities=9%  Similarity=0.046  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..+|+|+|+.|+||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999999887

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.37  E-value=0.0022  Score=55.15  Aligned_cols=24  Identities=21%  Similarity=0.116  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+.++|++|+||||||+.+.+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            356789999999999999999987

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.36  E-value=0.0022  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998866

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.34  E-value=0.0021  Score=50.92  Aligned_cols=23  Identities=13%  Similarity=-0.126  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.34  E-value=0.0008  Score=50.50  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|-|+|++|+|||++|+.+++.
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCT
T ss_pred             cEEEECCCCccHHHHHHHHHHh
Confidence            3679999999999999999884

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.33  E-value=0.0022  Score=53.16  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.33  E-value=0.0019  Score=49.89  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.32  E-value=0.0014  Score=51.64  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.32  E-value=0.0014  Score=50.97  Aligned_cols=22  Identities=5%  Similarity=-0.011  Sum_probs=19.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.32  E-value=0.0057  Score=52.40  Aligned_cols=25  Identities=4%  Similarity=-0.020  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|.|+.|+|||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998865

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.31  E-value=0.014  Score=52.01  Aligned_cols=41  Identities=15%  Similarity=0.010  Sum_probs=29.6

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....++|.++|....       ....+|.++|++|+||||++..+..
T Consensus        72 ~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           72 ISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             HHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4455566666664321       2468999999999999999887753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.31  E-value=0.0022  Score=50.38  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998876

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.31  E-value=0.0025  Score=51.17  Aligned_cols=24  Identities=13%  Similarity=0.148  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|++|+|||||++.+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999865

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=96.31  E-value=0.0092  Score=53.85  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCC------
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPP------  224 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~------  224 (261)
                      .++.|..- .+-.-++|+|..|+|||+|++.+.++. .+.+-++++++   -+.... ...++..++.+.-...      
T Consensus       155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~---~iGER~rEv~e~~~~~~~~~~l~~~~l~~  229 (498)
T 1fx0_B          155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFG---GVGERTREGNDLYMEMKESGVINEQNIAE  229 (498)
T ss_dssp             THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEE---EESCCSHHHHHHHHHHHHTTSSCSSTTCC
T ss_pred             Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEE---EcccCcHHHHHHHHhhhcccccccccccc
Confidence            34445432 234678999999999999998887631 23345777888   777654 4566777776643222      


Q ss_pred             -CCC--ccccCC------CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          225 -SRV--SVIIGE------DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       225 -~~~--~~~~~~------~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                       ...  ....+.      -.....-.+.++++   ++..||++||+
T Consensus       230 ~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi  275 (498)
T 1fx0_B          230 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI  275 (498)
T ss_dssp             CCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence             100  000000      12233344566765   58999999997

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.29  E-value=0.0018  Score=54.67  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+.++|++|+|||+||+.+.+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788899999999999999988

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.29  E-value=0.0022  Score=52.49  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.28  E-value=0.0022  Score=52.04  Aligned_cols=23  Identities=13%  Similarity=-0.055  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.28  E-value=0.0037  Score=53.64  Aligned_cols=39  Identities=13%  Similarity=-0.014  Sum_probs=31.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+..++....  ...+.++|++|+||||+|+.+.+
T Consensus        42 ~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           42 QDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence            6667778888876543  22388999999999999999987

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.28  E-value=0.0012  Score=53.74  Aligned_cols=24  Identities=13%  Similarity=-0.205  Sum_probs=19.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.++.|.|..|+||||++..+..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~   34 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLH   34 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHH
Confidence            357899999999999998876654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.28  E-value=0.0021  Score=50.17  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|+.|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.28  E-value=0.022  Score=48.78  Aligned_cols=40  Identities=15%  Similarity=0.037  Sum_probs=29.5

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++..+.+...+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus         7 ~~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~   46 (334)
T 1a5t_A            7 LRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR   46 (334)
T ss_dssp             GHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence            4455666777665442 345688999999999999998865

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0074  Score=53.61  Aligned_cols=41  Identities=17%  Similarity=0.074  Sum_probs=29.5

Q ss_pred             hhHhHHHHHHHHh----cC-------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLI----EG-------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.+++|.+.+.    ..       -...+=|-++|++|+|||.||+.+.+
T Consensus       187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence            6666666655442    11       13346688999999999999999998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.27  E-value=0.0061  Score=51.82  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|+|+.|+|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999998876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.27  E-value=0.0049  Score=53.49  Aligned_cols=37  Identities=14%  Similarity=0.012  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455555554445678999999999999999987753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.27  E-value=0.0023  Score=52.54  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            7899999999999999999975

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.26  E-value=0.0043  Score=50.87  Aligned_cols=24  Identities=8%  Similarity=-0.103  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....|.|.|++|+||||+|+.+.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.26  E-value=0.0024  Score=51.64  Aligned_cols=24  Identities=4%  Similarity=0.054  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            346999999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.25  E-value=0.0053  Score=55.58  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=29.6

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.--.+.|.++|....       ....+++|+|.+|+|||||++.+..
T Consensus       268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence            4445556666664321       3457999999999999999998854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.25  E-value=0.0012  Score=52.48  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0054  Score=53.37  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=29.5

Q ss_pred             hhHhHHHHHHHHhcCC---------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP---------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~---------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.--.++|.+.|....         ....+++|+|+.|+||||+++.+..
T Consensus       130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence            4555556666664321         2457999999999999999998854

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.24  E-value=0.02  Score=48.60  Aligned_cols=35  Identities=9%  Similarity=-0.160  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++.|...+..+.  .+.+-++|++|+||||+|+.+.+
T Consensus         6 ~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~   40 (305)
T 2gno_A            6 LETLKRIIEKSE--GISILINGEDLSYPREVSLELPE   40 (305)
T ss_dssp             HHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence            445555555443  67889999999999999999866

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.24  E-value=0.0023  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++|+|++|+|||||++.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            357999999999999999998863

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.24  E-value=0.0024  Score=50.82  Aligned_cols=24  Identities=4%  Similarity=0.151  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+|+.|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            357899999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.24  E-value=0.0022  Score=48.92  Aligned_cols=21  Identities=0%  Similarity=-0.126  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.23  E-value=0.015  Score=51.68  Aligned_cols=24  Identities=17%  Similarity=-0.054  Sum_probs=20.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+|++|+||||++..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999887754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.23  E-value=0.0058  Score=48.92  Aligned_cols=38  Identities=18%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...+.+-..+..  ....+|.|+|.+|+|||||+..+...
T Consensus        24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            334444444433  34789999999999999999887653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.23  E-value=0.0018  Score=49.62  Aligned_cols=22  Identities=14%  Similarity=0.221  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.22  E-value=0.0028  Score=52.18  Aligned_cols=24  Identities=8%  Similarity=0.145  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|.|+.|+||||+|+.+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998866

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.21  E-value=0.0025  Score=49.46  Aligned_cols=24  Identities=8%  Similarity=-0.022  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++|+|+.|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.21  E-value=0.0033  Score=49.73  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=22.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|.|+.|+||||+++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999998876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.21  E-value=0.0071  Score=51.81  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=20.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+|++|+||||++..+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999887754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.21  E-value=0.0022  Score=50.66  Aligned_cols=21  Identities=19%  Similarity=0.104  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +++|+|+.|+|||||.+.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            689999999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.20  E-value=0.0017  Score=50.42  Aligned_cols=22  Identities=9%  Similarity=0.116  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|..|+|||||++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.20  E-value=0.0026  Score=50.29  Aligned_cols=24  Identities=17%  Similarity=-0.002  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|++|+||||+|+.+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.19  E-value=0.0028  Score=50.33  Aligned_cols=23  Identities=0%  Similarity=-0.136  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|+.|+||||+++.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.19  E-value=0.0094  Score=53.59  Aligned_cols=91  Identities=10%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhC--------CCCCCccccCCC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVM--------PPSRVSVIIGED  234 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~--------~~~~~~~~~~~~  234 (261)
                      ..++|+|.+|+|||||++.+..+... .+-+.++++   .+.+.. ...+++.++...-.        ....++.....-
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~---~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~  227 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFA---GVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR  227 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEE---EESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEe---eeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence            35889999999999999988763221 122445666   665543 33455555543210        001100000000


Q ss_pred             HHHHHHHHHHhc---cCCeEEEEeecC
Q 046049          235 YQLKKSILRDYL---TDKKYFIVLDDV  258 (261)
Q Consensus       235 ~~~l~~~l~~~L---~~kr~LlVlDDV  258 (261)
                      .....-.+.+++   ++++.||++||+
T Consensus       228 ~~~~~ltiAEyFrd~~G~~VLl~~D~i  254 (473)
T 1sky_E          228 VALTGLTMAEYFRDEQGQDGLLFIDNI  254 (473)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            111112344554   578999999997

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.18  E-value=0.0033  Score=52.74  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|.|+.|+||||+|+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.18  E-value=0.0032  Score=50.84  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.+||.|.|++|+||||.|+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.17  E-value=0.0018  Score=50.16  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=16.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.17  E-value=0.0061  Score=51.87  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             hhHhHHHHHHHHhcC------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..-.++|.+.|...      .....+|+|+|++|+||||++..+..
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A           80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence            344455555555332      13468999999999999999987754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.15  E-value=0.0025  Score=52.37  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=19.6

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.|+|++|+|||||++.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999873

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.15  E-value=0.019  Score=51.25  Aligned_cols=41  Identities=17%  Similarity=0.088  Sum_probs=29.1

Q ss_pred             hhHhHHHHHHHHhcC------CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG------PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~------~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-.++|.++|...      +.+..+|.++|.+|+||||++..+..
T Consensus        76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHH
Confidence            445556666665431      12478999999999999998877753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.15  E-value=0.0024  Score=51.29  Aligned_cols=22  Identities=23%  Similarity=0.066  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.15  E-value=0.0025  Score=53.37  Aligned_cols=20  Identities=25%  Similarity=0.182  Sum_probs=19.2

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.++|++|+|||||++.+..
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999987

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.14  E-value=0.0035  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.14  E-value=0.0028  Score=51.91  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.14  E-value=0.0019  Score=52.34  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=16.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      -.+++|+|+.|+|||||++.+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999988

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.14  E-value=0.0027  Score=52.79  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999965

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.13  E-value=0.0053  Score=48.98  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=26.7

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+.+...+..  .+..+|+|+|.+|+|||||+..+..
T Consensus        16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            334444444432  2478999999999999999988765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.12  E-value=0.0031  Score=50.01  Aligned_cols=23  Identities=0%  Similarity=-0.286  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|+.|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.11  E-value=0.0013  Score=57.62  Aligned_cols=34  Identities=15%  Similarity=-0.036  Sum_probs=25.3

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++++.+..-. .-..++|+|++|+|||||++.+.+
T Consensus       163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar  196 (422)
T 3ice_A          163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ  196 (422)
T ss_dssp             HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred             eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH
Confidence            3455554332 346899999999999999998865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.11  E-value=0.0029  Score=53.00  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999999999865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.10  E-value=0.0035  Score=48.57  Aligned_cols=23  Identities=13%  Similarity=-0.099  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+|.|.|+.|+||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998866

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.10  E-value=0.003  Score=51.82  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.10  E-value=0.0034  Score=53.64  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=19.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      .+.+||+|.|-||+||||.+-.+
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNL   68 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNL   68 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHH
Confidence            35799999999999999977655

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.09  E-value=0.003  Score=52.34  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.09  E-value=0.0033  Score=51.89  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999987

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.08  E-value=0.0039  Score=49.77  Aligned_cols=23  Identities=4%  Similarity=-0.139  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|+.|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998866

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.06  E-value=0.0034  Score=51.51  Aligned_cols=23  Identities=13%  Similarity=-0.034  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.06  E-value=0.0032  Score=50.82  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|++|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.05  E-value=0.0032  Score=52.46  Aligned_cols=23  Identities=17%  Similarity=0.060  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999965

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.05  E-value=0.0033  Score=51.18  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999976

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.04  E-value=0.0032  Score=52.40  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHc
Confidence            46899999999999999999865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.04  E-value=0.0033  Score=50.45  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998866

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.04  E-value=0.0068  Score=54.49  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=59.0

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCC-CHHHHHHHHHHHhCCC------
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPP------  224 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~------  224 (261)
                      .++.|..- .+-.-++|+|..|+|||+|++.+.++. .+.+-+.++++   -+.... ...++++++.+.-...      
T Consensus       143 ~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~---~iGER~rEv~e~~~~~~~~~~l~~~~~~~  217 (482)
T 2ck3_D          143 VVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFA---GVGERTREGNDLYHEMIESGVINLKDATS  217 (482)
T ss_dssp             HHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEE---EESCCHHHHHHHHHHHHHHTSSCSSSSCC
T ss_pred             EEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEE---ECCCcchHHHHHHHHhhhccccccccCCc
Confidence            44555332 124678999999999999998887632 22344566777   777654 3466777776653222      


Q ss_pred             CCC--ccccCCC------HHHHHHHHHHhc---cCCeEEEEeecC
Q 046049          225 SRV--SVIIGED------YQLKKSILRDYL---TDKKYFIVLDDV  258 (261)
Q Consensus       225 ~~~--~~~~~~~------~~~l~~~l~~~L---~~kr~LlVlDDV  258 (261)
                      ...  ....+..      .....-.+.+++   .++..||++||+
T Consensus       218 rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi  262 (482)
T 2ck3_D          218 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI  262 (482)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            100  0000111      112222344555   468999999997

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.03  E-value=0.0051  Score=55.49  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.++..|....  ..-+.++|++|+|||++|+.+.+
T Consensus       185 r~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            8889999999987643  23456899999999999999876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.02  E-value=0.0034  Score=51.73  Aligned_cols=23  Identities=13%  Similarity=0.083  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999999965

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.02  E-value=0.0036  Score=52.18  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.01  E-value=0.0036  Score=49.33  Aligned_cols=23  Identities=4%  Similarity=-0.130  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|.|+.|+||||+++.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.00  E-value=0.0029  Score=51.04  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.98  E-value=0.0038  Score=49.80  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998855

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.98  E-value=0.0036  Score=51.90  Aligned_cols=23  Identities=9%  Similarity=-0.055  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.98  E-value=0.0091  Score=51.75  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=28.0

Q ss_pred             hHhHHHHHHHHhc--CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIE--GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~--~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.-.+.+++.+..  .......|.|+|++|+||||+++.+..
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3445555555532  123466799999999999999997765

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.97  E-value=0.005  Score=52.21  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=28.7

Q ss_pred             hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..+..+..++..   .......+.|+|++|+||||||+.+++
T Consensus        17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            45555555555532   112345688999999999999999987

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.97  E-value=0.0037  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.108  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999975

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.97  E-value=0.0033  Score=50.56  Aligned_cols=23  Identities=9%  Similarity=-0.247  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|++|+||||+++.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.96  E-value=0.0037  Score=51.89  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999965

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.95  E-value=0.0064  Score=52.25  Aligned_cols=39  Identities=13%  Similarity=0.017  Sum_probs=28.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.|...+..+.  +..+.++|++|+||||+|+.+..
T Consensus        30 ~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           30 QNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             CHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            3445566666665543  33388999999999999998876

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.94  E-value=0.0043  Score=51.25  Aligned_cols=23  Identities=17%  Similarity=0.068  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-+-|+|++|+|||+||+.+++.
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            45679999999999999999884

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.94  E-value=0.0038  Score=53.70  Aligned_cols=40  Identities=10%  Similarity=-0.103  Sum_probs=27.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+...+.+..++........ +.|+|+.|+||||+++.+..
T Consensus        19 ~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           19 NEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHH
T ss_pred             CHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence            45556666666522222233 89999999999999998765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.93  E-value=0.0036  Score=52.25  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=19.5

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.|+|++|+|||||++.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            889999999999999999873

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.92  E-value=0.006  Score=52.93  Aligned_cols=24  Identities=17%  Similarity=0.104  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+.++|++|+|||++|+.+.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999987

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.92  E-value=0.0043  Score=49.00  Aligned_cols=21  Identities=14%  Similarity=0.033  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|+|.|+.|+||||+++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998866

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.92  E-value=0.004  Score=51.38  Aligned_cols=23  Identities=9%  Similarity=0.083  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.91  E-value=0.004  Score=52.32  Aligned_cols=23  Identities=9%  Similarity=-0.216  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999999965

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.91  E-value=0.004  Score=51.85  Aligned_cols=23  Identities=4%  Similarity=-0.029  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            46899999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.91  E-value=0.0043  Score=49.52  Aligned_cols=21  Identities=5%  Similarity=-0.018  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.88  E-value=0.0042  Score=51.37  Aligned_cols=23  Identities=13%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999976

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.87  E-value=0.0082  Score=47.99  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=29.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..-...+..++..-+ +-.-+.|+|++|+||||+|..+.+
T Consensus        41 ~~~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           41 FITFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHH
Confidence            4444666677765433 334689999999999999888776

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.86  E-value=0.0037  Score=51.64  Aligned_cols=22  Identities=9%  Similarity=0.021  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|+|+.|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.83  E-value=0.0054  Score=50.94  Aligned_cols=24  Identities=8%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH
Confidence            357999999999999999998754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.82  E-value=0.0089  Score=53.66  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++++..+....+-+-++|++|+|||+||+.+.+
T Consensus        49 l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           49 CGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence            3345555555433345678999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.80  E-value=0.0048  Score=48.00  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+++|+|+.|+|||||+..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999998876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.79  E-value=0.0046  Score=51.92  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=20.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-+.++|++|+|||++|+.+.+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35677999999999999999987

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.78  E-value=0.0052  Score=50.20  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|.|++|+||||+++.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.76  E-value=0.0047  Score=49.52  Aligned_cols=23  Identities=4%  Similarity=-0.110  Sum_probs=20.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.75  E-value=0.0055  Score=52.09  Aligned_cols=24  Identities=4%  Similarity=0.097  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            457899999999999999998864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.73  E-value=0.033  Score=48.00  Aligned_cols=52  Identities=12%  Similarity=-0.045  Sum_probs=33.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS  220 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~  220 (261)
                      .-.++.|.|.+|+||||||..+..+...  +=...+|+   +  -.-+...+...++..
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~f---S--lEms~~ql~~Rlls~   96 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVF---S--LEMSAEQLALRALSD   96 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEE---E--SSSCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEE---e--CCCCHHHHHHHHHHH
Confidence            3468889999999999999888653221  11234555   3  445566676666544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.71  E-value=0.005  Score=49.91  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+|+|.|+.|+|||||++.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999998876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.70  E-value=0.012  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...+++|+|++|+|||||++.+..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3457999999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.69  E-value=0.0061  Score=52.56  Aligned_cols=22  Identities=9%  Similarity=0.129  Sum_probs=20.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||||..+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999998876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.68  E-value=0.0063  Score=47.59  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|+|+|..|+|||||.+.+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3578999999999999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.68  E-value=0.011  Score=47.93  Aligned_cols=25  Identities=8%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-..|.|.|+.|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999873

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.68  E-value=0.0063  Score=48.69  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.++.|+|++|+|||||++.+..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.67  E-value=0.0063  Score=48.60  Aligned_cols=21  Identities=10%  Similarity=-0.084  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.67  E-value=0.0058  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.110  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.66  E-value=0.0097  Score=45.96  Aligned_cols=31  Identities=13%  Similarity=0.059  Sum_probs=24.5

Q ss_pred             HhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          156 LIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       156 L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...+.....|.|+|.+|+|||||...+.+.
T Consensus         9 ~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A            9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             HhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            3333345678999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.65  E-value=0.0063  Score=49.43  Aligned_cols=25  Identities=12%  Similarity=-0.087  Sum_probs=21.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|+|.|+.|+||||+++.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.64  E-value=0.0068  Score=51.04  Aligned_cols=23  Identities=17%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.++|++|+||||+|+.+.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHH
Confidence            46899999999999999999987

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.63  E-value=0.01  Score=47.00  Aligned_cols=86  Identities=9%  Similarity=0.009  Sum_probs=43.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  243 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~  243 (261)
                      .|+|=|..|+||||.++.+.+  ..+.+-...+..   .-+........++.++..-........-+-. +..+....+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~t---reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~   76 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILK---REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIK   76 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE---ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEE---ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999987  443332233333   3233333344444444332211100000001 3344455666


Q ss_pred             HhccCCeEEEEee
Q 046049          244 DYLTDKKYFIVLD  256 (261)
Q Consensus       244 ~~L~~kr~LlVlD  256 (261)
                      ..|...+ .+|.|
T Consensus        77 ~~L~~g~-~Vi~D   88 (197)
T 3hjn_A           77 QYLSEGY-AVLLD   88 (197)
T ss_dssp             HHHTTTC-EEEEE
T ss_pred             HHHHCCC-eEEec
Confidence            7776543 45555

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.63  E-value=0.0069  Score=50.57  Aligned_cols=21  Identities=10%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++|+|+.|+|||||.+.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.62  E-value=0.0064  Score=49.01  Aligned_cols=21  Identities=10%  Similarity=-0.061  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998866

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.62  E-value=0.0077  Score=53.41  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.+.|..-.....+++|+|+.|+|||||.+.+..
T Consensus        57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence            33344433223467999999999999999999976

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.62  E-value=0.0048  Score=52.53  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHc
Confidence            346899999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.61  E-value=0.0068  Score=52.73  Aligned_cols=23  Identities=13%  Similarity=0.082  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            36899999999999999999975

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.59  E-value=0.0066  Score=51.26  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.58  E-value=0.0064  Score=48.64  Aligned_cols=21  Identities=14%  Similarity=0.078  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +|.|.|++|+||||.|+.+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.55  E-value=0.013  Score=44.46  Aligned_cols=23  Identities=4%  Similarity=0.039  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..|+|+|.+|+|||||.+.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.54  E-value=0.0074  Score=50.75  Aligned_cols=22  Identities=9%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.51  E-value=0.014  Score=50.22  Aligned_cols=33  Identities=18%  Similarity=0.084  Sum_probs=25.2

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +++-+...-....+++|+|++|+|||||.+.+.
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence            444443333457899999999999999999886

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.49  E-value=0.0071  Score=47.49  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+|+|..|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            467899999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.47  E-value=0.0078  Score=52.45  Aligned_cols=23  Identities=4%  Similarity=-0.005  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHhc
Confidence            46899999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.46  E-value=0.0081  Score=48.68  Aligned_cols=23  Identities=13%  Similarity=-0.057  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|+.|+||||+|+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998866

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.46  E-value=0.0073  Score=46.75  Aligned_cols=22  Identities=14%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|+|+|.+|+|||||.+.+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.45  E-value=0.0081  Score=52.19  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            36899999999999999999975

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.44  E-value=0.0088  Score=51.08  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...++.|+|+.|+|||||.+.+...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4789999999999999999999853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.42  E-value=0.0087  Score=51.23  Aligned_cols=22  Identities=9%  Similarity=0.093  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|+|+.|+||||||+.+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.40  E-value=0.011  Score=50.91  Aligned_cols=23  Identities=9%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|+|+.|+|||||+..+..
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999987

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.39  E-value=0.0041  Score=52.47  Aligned_cols=24  Identities=4%  Similarity=0.109  Sum_probs=18.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..+|+|.|+.|+||||+|+.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.39  E-value=0.0098  Score=48.77  Aligned_cols=23  Identities=13%  Similarity=0.109  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ...++.+.|.||+||||++..+.
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHH
Confidence            46889999999999999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.39  E-value=0.0092  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|++|+|||||++.+..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            346999999999999999998865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.38  E-value=0.0093  Score=49.71  Aligned_cols=23  Identities=17%  Similarity=0.041  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.++.|+|++|+|||||+..+..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999988764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.38  E-value=0.0088  Score=52.04  Aligned_cols=23  Identities=22%  Similarity=0.033  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHC
Confidence            46899999999999999999975

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.38  E-value=0.011  Score=44.07  Aligned_cols=23  Identities=9%  Similarity=0.107  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|.++|.+|+|||||...+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.37  E-value=0.0088  Score=52.43  Aligned_cols=23  Identities=9%  Similarity=0.002  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHHc
Confidence            36899999999999999999975

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.36  E-value=0.012  Score=52.61  Aligned_cols=41  Identities=27%  Similarity=0.194  Sum_probs=29.2

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....++|.+++....       ....+|+|+|.+|+||||++..+..
T Consensus        74 ~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           74 IKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             HHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4445566666664331       2356999999999999999987755

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.35  E-value=0.01  Score=45.83  Aligned_cols=21  Identities=14%  Similarity=0.197  Sum_probs=19.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+.+|+|+.|+|||||...++
T Consensus        27 g~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            388999999999999999884

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.35  E-value=0.009  Score=52.03  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            46899999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.33  E-value=0.022  Score=49.07  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=25.0

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+..-+.....+..+|+|+|.+|+|||||+..+.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHH
Confidence            3343333333457899999999999999998875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.32  E-value=0.011  Score=44.24  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.31  E-value=0.0094  Score=52.12  Aligned_cols=23  Identities=13%  Similarity=-0.025  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHc
Confidence            35899999999999999999975

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.30  E-value=0.043  Score=57.47  Aligned_cols=87  Identities=13%  Similarity=-0.018  Sum_probs=54.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~~  240 (261)
                      .-+.+-|+|++|+|||+||..+...  ...+=...+|+   +....++...     ++.++.+...-.-. ....++...
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi---~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEE---CTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEE---EcccccCHHH-----HHHcCCCchhceeecCChHHHHHH
Confidence            4578999999999999999988662  22221356788   8888877665     44554332210000 113445555


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .++...+ .+--+||+|.+
T Consensus      1496 ~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A         1496 ICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp             HHHHHHHHTCCSEEEESCG
T ss_pred             HHHHHHhcCCCCEEEEcCh
Confidence            5555543 45679999986

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.30  E-value=0.01  Score=50.60  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.|+|+.|+||||||..+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            36899999999999999999876

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.29  E-value=0.021  Score=51.92  Aligned_cols=40  Identities=18%  Similarity=0.096  Sum_probs=28.5

Q ss_pred             hhHhHHHHHHHHhcCC-------CCeEEEEEEeCCCccHHHHHHHHH
Q 046049          145 FERGREELFDLLIEGP-------PRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .....++|.++|....       .+..+|+|+|.+|+||||++..+.
T Consensus        76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           76 QHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             HHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4455566667664421       346799999999999999998776

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.29  E-value=0.0091  Score=50.64  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-+-|+|++|+|||++|+.+++.
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CcEEEECCCCchHHHHHHHHHHh
Confidence            45679999999999999999873

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.29  E-value=0.0097  Score=52.04  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            46899999999999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.28  E-value=0.013  Score=45.08  Aligned_cols=24  Identities=4%  Similarity=0.008  Sum_probs=21.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+++|.+|+|||||...+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998774

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.28  E-value=0.014  Score=55.89  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..++.++..|....  ..-+-++|++|+|||++|+.+.+
T Consensus       185 ~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          185 RSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             CHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            8899999999987643  23367999999999999998876

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.27  E-value=0.0081  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCccHHHHHHHHHc
Confidence            36899999999999999999975

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.26  E-value=0.0041  Score=51.37  Aligned_cols=20  Identities=20%  Similarity=0.152  Sum_probs=18.7

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.++|++|+|||+||+.+.+
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67999999999999999987

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.24  E-value=0.01  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...++|+|+.|+|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.24  E-value=0.012  Score=49.77  Aligned_cols=23  Identities=17%  Similarity=-0.052  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+++|+|.+|+||||++..+..
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.23  E-value=0.012  Score=47.82  Aligned_cols=23  Identities=13%  Similarity=0.083  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|..|+||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.22  E-value=0.0098  Score=52.80  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....+|.|+|++|+||||+|+.+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.22  E-value=0.011  Score=44.39  Aligned_cols=24  Identities=0%  Similarity=-0.021  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.18  E-value=0.0073  Score=52.45  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            46899999999999999999975

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.14  E-value=0.013  Score=44.51  Aligned_cols=24  Identities=25%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            456899999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.11  E-value=0.013  Score=43.93  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.++|.+|+|||||...+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356889999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.09  E-value=0.012  Score=51.67  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            46899999999999999999975

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.08  E-value=0.023  Score=47.20  Aligned_cols=39  Identities=5%  Similarity=-0.041  Sum_probs=29.5

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-..-+..||....++..-|.++|++|+|||++|..+.+
T Consensus        88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            334456777766534456699999999999999998876

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.08  E-value=0.02  Score=43.52  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...|.|+|.+|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999988764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.06  E-value=0.041  Score=45.34  Aligned_cols=41  Identities=15%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ..+.++.+.+.....+...|+++|.+|+|||||...+....
T Consensus        20 ~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34445555555544456789999999999999999987643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.06  E-value=0.11  Score=46.45  Aligned_cols=52  Identities=21%  Similarity=0.113  Sum_probs=32.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      ..-.++.|.|.+|+||||||..+..+....+  ...+|+   +..  -+...+...++.
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~f---SlE--ms~~ql~~R~~~  246 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLH---SLE--MGKKENIKRLIV  246 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEE---CSS--SCTTHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEE---ECC--CCHHHHHHHHHH
Confidence            3457899999999999999988766322221  245566   443  334445554443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.05  E-value=0.041  Score=45.52  Aligned_cols=43  Identities=9%  Similarity=0.053  Sum_probs=30.5

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ....+.+++..+.........|.++|.+|+|||||...+....
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           21 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344445555555444456788999999999999999988653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.05  E-value=0.017  Score=43.46  Aligned_cols=25  Identities=16%  Similarity=-0.005  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.04  E-value=0.014  Score=49.73  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|+|+.|+||||||..+..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            357899999999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.04  E-value=0.046  Score=46.48  Aligned_cols=53  Identities=21%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS  220 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~  220 (261)
                      ..-.++.|.|.+|+||||||..+..+.....  ...+|+   +..  -+...+...++..
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~---slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLH---SLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEE---ESS--SCHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEE---ECC--CCHHHHHHHHHHH
Confidence            3457899999999999999988765322222  456666   543  4566666666554

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.04  E-value=0.014  Score=45.21  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.++|.+|+|||||...+...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            356889999999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.03  E-value=0.035  Score=49.79  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=26.5

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+..+...+...+   ..+.|.|.+|+||||++..+..
T Consensus        31 ~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~   67 (459)
T 3upu_A           31 KNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE   67 (459)
T ss_dssp             HHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence            334444555554433   3899999999999999988766

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.02  E-value=0.11  Score=45.53  Aligned_cols=35  Identities=17%  Similarity=0.037  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          150 EELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       150 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++++.|..-. .-.-++|+|.+|+|||+|++.+.+
T Consensus       163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred             chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence            35566665432 245789999999999999988876

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.01  E-value=0.015  Score=43.78  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|.|+|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999988764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.014  Score=45.28  Aligned_cols=26  Identities=8%  Similarity=-0.065  Sum_probs=22.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .....|.|+|.+|+|||||...+...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34568899999999999999988764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.97  E-value=0.011  Score=51.53  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.++|++|+|||++|+.+.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999987

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.97  E-value=0.018  Score=43.22  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|.|+|.+|+|||||...+.++
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999988764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.95  E-value=0.015  Score=43.70  Aligned_cols=23  Identities=9%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||...+.++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999888764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.94  E-value=0.02  Score=43.12  Aligned_cols=23  Identities=13%  Similarity=0.109  Sum_probs=19.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-|.|+|.+|+|||||...+..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.93  E-value=0.014  Score=43.86  Aligned_cols=21  Identities=24%  Similarity=0.121  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.++|.+|+|||||.+.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            578999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.93  E-value=0.014  Score=50.92  Aligned_cols=24  Identities=8%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999998854

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.93  E-value=0.025  Score=44.34  Aligned_cols=24  Identities=8%  Similarity=-0.094  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|+++|.+|+|||||...+.++
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999988753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.93  E-value=0.016  Score=44.44  Aligned_cols=23  Identities=9%  Similarity=-0.048  Sum_probs=20.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..|+|+|.+|+|||||.+.+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56889999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.93  E-value=0.015  Score=43.72  Aligned_cols=24  Identities=13%  Similarity=0.127  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.|+|.+|+|||||...+.++
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            356889999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.93  E-value=0.015  Score=43.44  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.|+|.+|+|||||...+.++
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999888654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.91  E-value=0.034  Score=44.59  Aligned_cols=23  Identities=9%  Similarity=-0.155  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..|.|-|+.|+||||+++.+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=94.91  E-value=0.028  Score=50.79  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=48.1

Q ss_pred             eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCCC-HHHHHHHHHHHhCCC--------CCCcccc
Q 046049          163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAYD-FGKILDDIIKSVMPP--------SRVSVII  231 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~--------~~~~~~~  231 (261)
                      -.-++|+|..|+|||+|| ..+.+..  .  -+ .++++   -+.+..+ ..++.+++...-...        .+++...
T Consensus       163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~---~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~  235 (507)
T 1fx0_A          163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYV---AIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL  235 (507)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEE---EESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred             CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEE---EcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence            356789999999999995 5777743  2  34 34666   6665533 344555544321110        1100000


Q ss_pred             CCCHHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          232 GEDYQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       232 ~~~~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      ..-.....-.+.+++  .++..||++||+
T Consensus       236 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl  264 (507)
T 1fx0_A          236 QYLAPYTGAALAEYFMYRERHTLIIYDDL  264 (507)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence            001112222334444  589999999996

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=94.90  E-value=0.017  Score=50.00  Aligned_cols=25  Identities=16%  Similarity=0.025  Sum_probs=22.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+|+|+|.+|+|||||...+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3478999999999999999998864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.88  E-value=0.013  Score=49.73  Aligned_cols=21  Identities=10%  Similarity=0.273  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+|+|.+|+|||||.+.++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            349999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.88  E-value=0.015  Score=46.96  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.++.|.|++|+|||||+..+..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999877654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.88  E-value=0.013  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999999976

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=94.87  E-value=0.024  Score=51.25  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             eEEEEEEeCCCccHHHHH-HHHHcCCCcccccce-eeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--ccccCC-CH-
Q 046049          163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFDC-HAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVIIGE-DY-  235 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~~~-~~-  235 (261)
                      -.-++|+|..|+|||+|| ..+.+..    .-+. ++++   -+.+.. ...++.+++.+.-......  ....+. .. 
T Consensus       175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~---~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~  247 (515)
T 2r9v_A          175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYV---AIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL  247 (515)
T ss_dssp             TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEE---EESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred             CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEE---EcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence            356889999999999995 5777742    2443 4666   666553 3456666665421111100  000011 01 


Q ss_pred             ----HHHHHHHHHhc--cCCeEEEEeecC
Q 046049          236 ----QLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       236 ----~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                          ....-.+.+++  .++..||++||+
T Consensus       248 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl  276 (515)
T 2r9v_A          248 QYIAPYAGCAMGEYFAYSGRDALVVYDDL  276 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence                11122344555  579999999996

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.86  E-value=0.017  Score=44.57  Aligned_cols=25  Identities=8%  Similarity=-0.023  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.84  E-value=0.02  Score=43.52  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=22.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....-|.|+|.+|+|||||...+..+
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            44677899999999999999998764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.84  E-value=0.014  Score=53.72  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...++.++|++|+||||||+.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.84  E-value=0.011  Score=48.93  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...|.|.|..|+||||+++.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998766

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.84  E-value=0.079  Score=47.40  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=32.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII  218 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~  218 (261)
                      .-.++.|.|.+|+|||||+..+..+..... =..++|+   +.  .-+...+...++
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~---s~--E~s~~~l~~r~~  252 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIF---SL--EMSAQQLVMRML  252 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEE---ES--SSCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEE---EC--CCCHHHHHHHHH
Confidence            456899999999999999998866322111 1245566   43  334455555543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.84  E-value=0.017  Score=43.41  Aligned_cols=24  Identities=4%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.|+|.+|+|||||...+..+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999988754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.80  E-value=0.017  Score=50.24  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=20.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35999999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.80  E-value=0.015  Score=44.93  Aligned_cols=23  Identities=4%  Similarity=-0.302  Sum_probs=20.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-|.|+|.+|+|||||.+.+.+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            45788999999999999987765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.79  E-value=0.017  Score=43.86  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3567899999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.79  E-value=0.023  Score=48.09  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +++|.+.+.+     .+++++|+.|+|||||.+.+.
T Consensus       156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence            5566666532     588999999999999999987

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.78  E-value=0.02  Score=44.36  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...|.|+|.+|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4677899999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.77  E-value=0.022  Score=43.53  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3567899999999999999988754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.76  E-value=0.021  Score=44.11  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ...|.|+|.+|+|||||...+....
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            4578899999999999999987753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.76  E-value=0.011  Score=46.66  Aligned_cols=24  Identities=13%  Similarity=-0.115  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+|+|..|+|||||.+.+...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999988653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.76  E-value=0.023  Score=43.18  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999888664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.76  E-value=0.021  Score=43.79  Aligned_cols=25  Identities=12%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      .--|.|+|.+|+|||||...+.++.
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468899999999999999987643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.75  E-value=0.019  Score=44.12  Aligned_cols=22  Identities=0%  Similarity=-0.040  Sum_probs=19.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.74  E-value=0.022  Score=43.65  Aligned_cols=25  Identities=12%  Similarity=0.200  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.73  E-value=0.019  Score=43.18  Aligned_cols=24  Identities=4%  Similarity=0.025  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999988753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.73  E-value=0.018  Score=44.60  Aligned_cols=25  Identities=12%  Similarity=0.101  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.++
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999876554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.73  E-value=0.02  Score=45.34  Aligned_cols=25  Identities=8%  Similarity=-0.073  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|.|+|++|+|||||...+...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.70  E-value=0.014  Score=46.46  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||+++.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.69  E-value=0.017  Score=49.93  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -.+++|+|+.|+|||||.+.+.+.
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            469999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.69  E-value=0.015  Score=52.86  Aligned_cols=20  Identities=20%  Similarity=0.194  Sum_probs=19.1

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|+|++|+||||||+.+..
T Consensus        67 vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999987

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=94.69  E-value=0.056  Score=48.80  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=50.3

Q ss_pred             eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-CHH
Q 046049          163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-DYQ  236 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~~~  236 (261)
                      -.-++|+|..|+|||+|| ..+.+..    +-+ .++++   -+.+.. ...++.+++.+.-......-  ...+. ...
T Consensus       162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~---~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~  234 (502)
T 2qe7_A          162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYV---AIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL  234 (502)
T ss_dssp             TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEE---EESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEE---ECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence            356789999999999995 5777732    234 34666   666553 34566666665322221100  00011 111


Q ss_pred             H-----HHHHHHHhc--cCCeEEEEeecC
Q 046049          237 L-----KKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       237 ~-----l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      .     ..-.+.+++  .++..||++||+
T Consensus       235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl  263 (502)
T 2qe7_A          235 LYLAPYAGCAMGEYFMYKGKHALVVYDDL  263 (502)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence            1     112344555  579999999996

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.68  E-value=0.02  Score=43.95  Aligned_cols=25  Identities=8%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4567899999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.68  E-value=0.034  Score=42.18  Aligned_cols=26  Identities=12%  Similarity=0.244  Sum_probs=22.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....-|.|+|.+|+|||||...+.+.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999988765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.68  E-value=0.019  Score=50.60  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|+.|+||||||..+..
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5899999999999999998865

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=94.68  E-value=0.021  Score=51.11  Aligned_cols=92  Identities=13%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcc-cccc-eeeEEecccccCC-CCHHHHHHHHHHHhCCCCCC--ccccCC-----
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVK-FYFD-CHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRV--SVIIGE-----  233 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~--~~~~~~-----  233 (261)
                      .-++|.|..|+|||+|+..+.+..... ++=+ .++++   -+... ....+++.++.+.-......  ....+.     
T Consensus       152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~---~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r  228 (465)
T 3vr4_D          152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFA---AIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER  228 (465)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEE---EEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred             CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEE---EecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence            347889999999999999888754331 1111 45666   66654 34456666655431111000  000011     


Q ss_pred             -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                       -.....-.+.++++   ++..||++||+
T Consensus       229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl  257 (465)
T 3vr4_D          229 IATPRMALTAAEYLAYEKGMHVLVIMTDM  257 (465)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence             11112233566664   78999999996

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.66  E-value=0.019  Score=43.52  Aligned_cols=26  Identities=8%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ...-|.|+|.+|+|||||...+....
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            45678999999999999999987643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.65  E-value=0.02  Score=44.53  Aligned_cols=24  Identities=13%  Similarity=-0.099  Sum_probs=20.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+++|.+|+|||||...+.++
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999988763

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=94.64  E-value=0.021  Score=47.07  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=18.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|+|.|-||+||||+|..+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~   23 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHH
Confidence            5788899999999999876643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.63  E-value=0.021  Score=43.33  Aligned_cols=23  Identities=9%  Similarity=0.063  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|.|+|..|+|||||...+..+
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56889999999999999988753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.59  E-value=0.019  Score=43.01  Aligned_cols=20  Identities=5%  Similarity=-0.185  Sum_probs=18.2

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.++|.+|+|||||...+..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999998865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.015  Score=52.29  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999866

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.59  E-value=0.017  Score=53.17  Aligned_cols=24  Identities=13%  Similarity=-0.083  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+|.|+|+.|+|||||++.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHH
Confidence            347999999999999999999876

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.56  E-value=0.021  Score=44.26  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.++
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3567889999999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.55  E-value=0.021  Score=43.63  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            467889999999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.53  E-value=0.015  Score=49.92  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999876

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.53  E-value=0.022  Score=43.58  Aligned_cols=24  Identities=8%  Similarity=-0.015  Sum_probs=20.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.++|.+|+|||||...+.++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999888754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.53  E-value=0.022  Score=43.86  Aligned_cols=25  Identities=16%  Similarity=0.056  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.52  E-value=0.023  Score=48.04  Aligned_cols=25  Identities=8%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4568999999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.50  E-value=0.031  Score=42.09  Aligned_cols=24  Identities=17%  Similarity=-0.089  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.50  E-value=0.018  Score=51.17  Aligned_cols=20  Identities=15%  Similarity=0.356  Sum_probs=19.0

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|+|+.|+|||||.+.++.
T Consensus        45 vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999976

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=94.49  E-value=0.025  Score=47.30  Aligned_cols=23  Identities=13%  Similarity=0.138  Sum_probs=19.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++|+|.|-||+||||+|..+..
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~   24 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHH
Confidence            46889999999999999887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.48  E-value=0.022  Score=44.15  Aligned_cols=26  Identities=15%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....-|.|+|.+|+|||||...+...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            34567899999999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.48  E-value=0.036  Score=42.05  Aligned_cols=25  Identities=12%  Similarity=0.033  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3456889999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.47  E-value=0.061  Score=41.37  Aligned_cols=25  Identities=16%  Similarity=-0.104  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3578899999999999999998854

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.47  E-value=0.022  Score=44.44  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999988654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.47  E-value=0.018  Score=43.88  Aligned_cols=24  Identities=4%  Similarity=0.004  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.++|.+|+|||||...+.++
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.46  E-value=0.021  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=21.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+++|+|+.|+|||||++.++.-
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999873

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.46  E-value=0.023  Score=43.34  Aligned_cols=24  Identities=8%  Similarity=-0.017  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999988764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.46  E-value=0.032  Score=50.71  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=26.9

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +..++.+...+..+    .-+-++|++|+|||+||+.+.+.
T Consensus        28 ~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           28 SHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             HHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence            33445555555443    36789999999999999999883

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.46  E-value=0.023  Score=43.33  Aligned_cols=25  Identities=8%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456889999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.45  E-value=0.024  Score=44.28  Aligned_cols=25  Identities=4%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.++|.+|+|||||.+.+.+.
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhc
Confidence            3567889999999999999977663

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.44  E-value=0.024  Score=44.08  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|+|+|.+|+|||||...+..+
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3567899999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.44  E-value=0.02  Score=52.62  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||++.+..
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999986

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.42  E-value=0.016  Score=49.46  Aligned_cols=37  Identities=11%  Similarity=-0.041  Sum_probs=27.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+...+..+    .-+-++|++|+|||+||+.+.+
T Consensus        32 ~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           32 QKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence            344455555555543    3577899999999999999877

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.41  E-value=0.088  Score=55.19  Aligned_cols=87  Identities=13%  Similarity=-0.030  Sum_probs=54.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~  240 (261)
                      .-.++-|.|++|+||||||..+....  ...=...+|+   +....++...     ++.++.......-... +.+++.+
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyi---s~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~  451 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE  451 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEE---CTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEE---EcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHH
Confidence            45799999999999999999886632  2222367888   8777776532     4556554321100012 6666766


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .+....+ .+--+||+|-+
T Consensus       452 ~~~~lv~~~~~~lIVIDSL  470 (2050)
T 3cmu_A          452 ICDALARSGAVDVIVVDSV  470 (2050)
T ss_dssp             HHHHHHHHTCCSEEEESCG
T ss_pred             HHHHHHHhcCCcEEEECCH
Confidence            6665442 44568898864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.40  E-value=0.022  Score=52.31  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            357999999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.39  E-value=0.026  Score=44.12  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            467899999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.39  E-value=0.025  Score=43.10  Aligned_cols=25  Identities=12%  Similarity=0.056  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3567899999999999999988764

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.38  E-value=0.013  Score=50.15  Aligned_cols=21  Identities=10%  Similarity=0.004  Sum_probs=19.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+-|+|++|+|||+||+.+.+
T Consensus        47 ~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            388999999999999999987

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.38  E-value=0.023  Score=45.09  Aligned_cols=22  Identities=18%  Similarity=0.081  Sum_probs=20.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||+++.+..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.37  E-value=0.032  Score=43.64  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567899999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.37  E-value=0.044  Score=42.31  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=22.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ....-|.|+|..|+|||||...+.++.
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence            345678999999999999999887643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.36  E-value=0.075  Score=54.91  Aligned_cols=87  Identities=13%  Similarity=-0.024  Sum_probs=54.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~~  240 (261)
                      .-.++-|.|.+|+||||||..+....  ...=...+|+   +...+++..     .++.++.......-... +.+++..
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyi---s~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~  451 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFI---DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALE  451 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEE---CTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEE---EccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHH
Confidence            45789999999999999998876532  2222467888   888777753     25556554321100112 5666666


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .+....+ .+--+||+|-+
T Consensus       452 ~l~~lv~~~~~~lVVIDSL  470 (1706)
T 3cmw_A          452 ICDALARSGAVDVIVVDSV  470 (1706)
T ss_dssp             HHHHHHHHTCCSEEEESCS
T ss_pred             HHHHHHHhcCCCEEEECCH
Confidence            6665543 34458899865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.35  E-value=0.022  Score=52.23  Aligned_cols=23  Identities=17%  Similarity=-0.016  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999975

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=94.34  E-value=0.02  Score=51.41  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccc--cceeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-----
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFY--FDCHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-----  233 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-----  233 (261)
                      .-++|.|..|+|||+|+..+.++......  =+..+++   -+.... ...+++.++...-......-  ...+.     
T Consensus       153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~---~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r  229 (469)
T 2c61_A          153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFA---AMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER  229 (469)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEE---EEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEE---EccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence            45678899999999999988775433211  1355666   666543 34566666664321111000  00011     


Q ss_pred             -CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          234 -DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       234 -~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                       -.....-.+.++++   ++..||++||+
T Consensus       230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl  258 (469)
T 2c61_A          230 IVTPRMALTAAEYLAYEHGMHVLVILTDI  258 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence             11122233556664   69999999995

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.34  E-value=0.025  Score=43.46  Aligned_cols=26  Identities=12%  Similarity=-0.065  Sum_probs=22.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ...-|.|+|.+|+|||||...+.++.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.33  E-value=0.025  Score=44.03  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.32  E-value=0.026  Score=44.14  Aligned_cols=25  Identities=24%  Similarity=0.162  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3567899999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.31  E-value=0.027  Score=44.73  Aligned_cols=23  Identities=17%  Similarity=0.027  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..|.|.|+.|+||||||..+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.30  E-value=0.027  Score=44.56  Aligned_cols=25  Identities=8%  Similarity=-0.023  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3567889999999999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.29  E-value=0.026  Score=43.72  Aligned_cols=24  Identities=4%  Similarity=-0.002  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999998775

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.29  E-value=0.024  Score=51.19  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            7999999999999999998863

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.28  E-value=0.032  Score=43.24  Aligned_cols=27  Identities=7%  Similarity=-0.165  Sum_probs=22.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      .....|.|+|.+|+|||||...+.+..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999987643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.28  E-value=0.031  Score=44.10  Aligned_cols=25  Identities=8%  Similarity=-0.048  Sum_probs=20.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|.|+|.+|+|||||...+..+
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467889999999999999988764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.26  E-value=0.035  Score=47.06  Aligned_cols=26  Identities=12%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +....|+|+|.+|+|||||...+...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45789999999999999999988764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.25  E-value=0.024  Score=46.11  Aligned_cols=23  Identities=13%  Similarity=-0.073  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-++|.|++|+||||+|+.+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            45689999999999999998866

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.24  E-value=0.039  Score=43.38  Aligned_cols=24  Identities=8%  Similarity=-0.015  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.|+|.+|+|||||...+.++
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            457789999999999999888754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.24  E-value=0.026  Score=43.92  Aligned_cols=24  Identities=4%  Similarity=-0.218  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            466999999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.24  E-value=0.033  Score=45.16  Aligned_cols=23  Identities=9%  Similarity=-0.171  Sum_probs=18.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..|.|-|+.|+||||+++.+.+
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.23  E-value=0.028  Score=44.04  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=21.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...-|.|+|.+|+|||||...+.++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567889999999999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.23  E-value=0.028  Score=44.28  Aligned_cols=26  Identities=12%  Similarity=0.134  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...-|.|+|.+|+|||||...+.+.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999988654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.22  E-value=0.033  Score=46.13  Aligned_cols=24  Identities=17%  Similarity=0.097  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467899999999999999988764

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=94.22  E-value=0.022  Score=50.92  Aligned_cols=92  Identities=14%  Similarity=0.223  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcc--------cccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCC--cccc
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVK--------FYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRV--SVII  231 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~--~~~~  231 (261)
                      .-++|.|..|+|||+|+..+.+.....        ++=+ .++++   -+.... ...++..++.+.-......  ....
T Consensus       148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~---~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~  224 (464)
T 3gqb_B          148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFA---AMGITQRELSYFIQEFERTGALSRSVLFLNKA  224 (464)
T ss_dssp             CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEE---EEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred             CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEE---EecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence            456888999999999999888754431        1111 45566   666543 3455666654421010000  0000


Q ss_pred             CC-C-----HHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          232 GE-D-----YQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       232 ~~-~-----~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                      +. .     .....-.+.++++   ++..||++||+
T Consensus       225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl  260 (464)
T 3gqb_B          225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM  260 (464)
T ss_dssp             TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence            11 1     1122234566664   78999999996

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.22  E-value=0.037  Score=44.37  Aligned_cols=26  Identities=8%  Similarity=0.111  Sum_probs=22.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .....|.|+|.+|+|||||...+...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999998764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.21  E-value=0.32  Score=43.97  Aligned_cols=54  Identities=13%  Similarity=0.088  Sum_probs=34.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS  220 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~  220 (261)
                      ..-.++.|.|.+|+||||||..+..+.... +=...+|+   +.  .-+...+...++..
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~---s~--E~s~~~l~~r~~~~  293 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLA---ML--EESVEETAEDLIGL  293 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEE---ES--SSCHHHHHHHHHHH
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEE---ec--cCCHHHHHHHHHHH
Confidence            345788999999999999998876532221 11245666   44  33456666665543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.21  E-value=0.027  Score=50.02  Aligned_cols=24  Identities=4%  Similarity=0.061  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||.+.+..
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHh
Confidence            357999999999999999998865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.20  E-value=0.028  Score=43.42  Aligned_cols=25  Identities=8%  Similarity=0.099  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3567899999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.19  E-value=0.028  Score=44.01  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ....|.|+|.+|+|||||...+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.19  E-value=0.028  Score=43.60  Aligned_cols=25  Identities=4%  Similarity=-0.008  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.+.
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4567889999999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.18  E-value=0.028  Score=43.44  Aligned_cols=25  Identities=8%  Similarity=-0.101  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3567889999999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.18  E-value=0.028  Score=43.84  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=20.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567889999999999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.17  E-value=0.026  Score=52.62  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~G  404 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAG  404 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999986

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=94.17  E-value=0.036  Score=44.05  Aligned_cols=24  Identities=4%  Similarity=-0.215  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|+|+||+|+||+|+|..+-+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHH
Confidence            357999999999999999988755

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.15  E-value=0.029  Score=43.50  Aligned_cols=25  Identities=12%  Similarity=0.117  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.+.
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3567889999999999999988764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.14  E-value=0.026  Score=50.37  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=22.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-..++|+|+.|+|||||.+.+...
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3578999999999999999999873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.14  E-value=0.03  Score=51.12  Aligned_cols=23  Identities=9%  Similarity=-0.018  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.++|++|+||||+|+.+..
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999865

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.12  E-value=0.028  Score=43.55  Aligned_cols=25  Identities=12%  Similarity=0.115  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC
Confidence            3567889999999999999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.12  E-value=0.03  Score=43.22  Aligned_cols=24  Identities=8%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457899999999999999988764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.10  E-value=0.052  Score=44.26  Aligned_cols=23  Identities=9%  Similarity=-0.049  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...|.|.|+.|+||||+++.+..
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.10  E-value=0.029  Score=43.80  Aligned_cols=25  Identities=8%  Similarity=0.154  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4578899999999999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.09  E-value=0.03  Score=43.21  Aligned_cols=25  Identities=8%  Similarity=0.121  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3567899999999999999988754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.09  E-value=0.027  Score=52.43  Aligned_cols=23  Identities=9%  Similarity=0.001  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            46999999999999999999875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.09  E-value=0.031  Score=43.82  Aligned_cols=25  Identities=8%  Similarity=0.117  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999988754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.09  E-value=0.029  Score=48.69  Aligned_cols=23  Identities=4%  Similarity=0.069  Sum_probs=20.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+++|+|++|+|||||.+.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            48999999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.06  E-value=0.042  Score=44.43  Aligned_cols=26  Identities=8%  Similarity=0.110  Sum_probs=22.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ...-|+|+|.+|+|||||...+....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            46789999999999999999988743

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=94.06  E-value=0.036  Score=50.12  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHH-HHHHcCCCc----ccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCC
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFA-ADAFNNNHV----KFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPP  224 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~  224 (261)
                      .++.|..-. +-.-++|+|..|+|||+|| ..+.+....    .++-+ .++++   -+.+.. ...++.+++.+.-...
T Consensus       152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~---~IGeR~~Ev~~~~~~~~~~g~m~  227 (510)
T 2ck3_A          152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYV---AIGQKRSTVAQLVKRLTDADAMK  227 (510)
T ss_dssp             HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEE---EESCCHHHHHHHHHHHHHTTCGG
T ss_pred             eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEE---ECCCCcHHHHHHHHHHHhcCCcc
Confidence            344454321 2356789999999999995 566663221    12344 35677   776654 3456666665432111


Q ss_pred             CCC--ccccCCC-HH-----HHHHHHHHhc--cCCeEEEEeecC
Q 046049          225 SRV--SVIIGED-YQ-----LKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       225 ~~~--~~~~~~~-~~-----~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      ...  ....+.. ..     ...-.+.+++  .++..||++||+
T Consensus       228 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl  271 (510)
T 2ck3_A          228 YTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL  271 (510)
T ss_dssp             GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred             cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence            100  0000110 11     1122344455  579999999996

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.05  E-value=0.027  Score=52.40  Aligned_cols=22  Identities=9%  Similarity=0.107  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||++.+..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5799999999999999999975

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.05  E-value=0.031  Score=44.32  Aligned_cols=25  Identities=16%  Similarity=0.096  Sum_probs=20.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3467889999999999999988764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.04  E-value=0.03  Score=43.72  Aligned_cols=21  Identities=10%  Similarity=-0.113  Sum_probs=17.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .++.|+|+.|+||||++..+.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999985443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.02  E-value=0.033  Score=43.85  Aligned_cols=24  Identities=4%  Similarity=-0.065  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.01  E-value=0.047  Score=42.27  Aligned_cols=25  Identities=8%  Similarity=0.065  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+..+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3467899999999999999988753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.99  E-value=0.04  Score=41.46  Aligned_cols=22  Identities=9%  Similarity=0.107  Sum_probs=19.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..+..|+|+.|.||||+...++
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3688999999999999988774

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.99  E-value=0.061  Score=43.09  Aligned_cols=22  Identities=14%  Similarity=-0.035  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|.|-|+.|+||||+++.+..
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.98  E-value=0.032  Score=42.79  Aligned_cols=24  Identities=17%  Similarity=-0.129  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|..|+|||||...+...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            467889999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.98  E-value=0.03  Score=43.68  Aligned_cols=22  Identities=14%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..-|.|+|.+|+|||||...+.
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~   27 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFA   27 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4578999999999999998875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.96  E-value=0.029  Score=42.85  Aligned_cols=24  Identities=17%  Similarity=-0.075  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-|.|+|.+|+|||||...+..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            457888999999999999998875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=93.95  E-value=0.028  Score=43.65  Aligned_cols=25  Identities=16%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|..|+|||||...+.++
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.91  E-value=0.029  Score=51.90  Aligned_cols=24  Identities=17%  Similarity=0.075  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            346899999999999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.91  E-value=0.028  Score=49.88  Aligned_cols=21  Identities=10%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |+|+|..|+|||||.+.+...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            499999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.88  E-value=0.036  Score=43.48  Aligned_cols=26  Identities=8%  Similarity=-0.014  Sum_probs=22.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...-|.|+|.+|+|||||...+.++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            34677999999999999999988754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=93.85  E-value=0.027  Score=50.32  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+-|.++|++|+||||+|+.+..
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHHH
Confidence            34588999999999999999987

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.85  E-value=0.035  Score=42.97  Aligned_cols=24  Identities=8%  Similarity=0.059  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.++
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467899999999999999988764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.84  E-value=0.049  Score=52.28  Aligned_cols=24  Identities=21%  Similarity=0.070  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+-+-++|++|+|||.||+.+.+.
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e  534 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANE  534 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCchHHHHHHHHH
Confidence            345679999999999999999983

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.84  E-value=0.037  Score=43.28  Aligned_cols=24  Identities=8%  Similarity=-0.053  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+..+
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457889999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.84  E-value=0.034  Score=47.01  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++++..++..     .+++|+|+.|+|||||.+.+..
T Consensus       160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred             HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence            5566666632     4889999999999999999975

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.83  E-value=0.056  Score=41.62  Aligned_cols=25  Identities=16%  Similarity=-0.088  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +..-|.|+|.+|+|||||...+..+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999988653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.82  E-value=0.037  Score=43.54  Aligned_cols=25  Identities=8%  Similarity=-0.035  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..--|.|+|.+|+|||||...+.++
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.81  E-value=0.036  Score=43.52  Aligned_cols=25  Identities=4%  Similarity=0.193  Sum_probs=20.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567899999999999999988754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.78  E-value=0.032  Score=51.96  Aligned_cols=23  Identities=22%  Similarity=-0.002  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            46999999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.77  E-value=0.032  Score=51.67  Aligned_cols=24  Identities=17%  Similarity=0.063  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.76  E-value=0.046  Score=44.21  Aligned_cols=24  Identities=8%  Similarity=-0.191  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....|.|.|+.|+||||+++.+.+
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999987

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=93.75  E-value=0.11  Score=46.98  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             eEEEEEEeCCCccHHHHH-HHHHcCCCcccccc-eeeEEecccccCCC-CHHHHHHHHHHHhCCCCCCc--cccCC-C--
Q 046049          163 LSVVAILDGIGFDMTAFA-ADAFNNNHVKFYFD-CHAWVKNLSVSIAY-DFGKILDDIIKSVMPPSRVS--VIIGE-D--  234 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~vs~~~-~~~~il~~i~~~l~~~~~~~--~~~~~-~--  234 (261)
                      -.-++|.|..|+|||+|+ ..+.+.    .+-+ .++++   -+.+.. ...++.+++.+.-......-  ...+. .  
T Consensus       162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~---~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~  234 (513)
T 3oaa_A          162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYV---AIGQKASTISNVVRKLEEHGALANTIVVVATASESAAL  234 (513)
T ss_dssp             TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEE---EESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHH
T ss_pred             CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEE---EecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHH
Confidence            356789999999999996 566663    1233 34677   777654 34566666554322211100  00011 0  


Q ss_pred             ---HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 ---YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 ---~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                         .....-.+.+++  +++..||++||+
T Consensus       235 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl  263 (513)
T 3oaa_A          235 QYLAPYAGCAMGEYFRDRGEDALIIYDDL  263 (513)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence               111112234444  589999999996

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=93.73  E-value=0.054  Score=45.77  Aligned_cols=25  Identities=12%  Similarity=0.104  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|+|+|.+|+|||||...+...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=93.73  E-value=0.041  Score=43.50  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...-|.|+|.+|+|||||...+...
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence            34567899999999999999988764

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=93.68  E-value=0.15  Score=55.04  Aligned_cols=52  Identities=15%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      +-+-++|++|+|||++|+.+....   ..+. .+.+   +.|...+...+++.+-..+.
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~~-~~~i---nfsa~ts~~~~~~~i~~~~~ 1319 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRNS---SLYD-VVGI---NFSKDTTTEHILSALHRHTN 1319 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC---SSCE-EEEE---ECCTTCCHHHHHHHHHHHBC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcC---CCCc-eEEE---EeecCCCHHHHHHHHHHHhh
Confidence            467799999999999997776632   1222 2345   66666666666666555443

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.68  E-value=0.05  Score=43.27  Aligned_cols=22  Identities=9%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-|+|-|..|+||||+++.+.+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYH   24 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999887

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.64  E-value=0.04  Score=49.54  Aligned_cols=23  Identities=4%  Similarity=-0.041  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|.++|++|+||||+++.+..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.59  E-value=0.023  Score=43.56  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=11.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...-|.|+|.+|+|||||...+.++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567899999999999999887654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.59  E-value=0.033  Score=51.81  Aligned_cols=37  Identities=11%  Similarity=0.028  Sum_probs=26.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..++.+...+..+    ..+.|+|++|+||||||+.+..
T Consensus        46 ~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           46 QEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             CHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred             chhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence            334444444444433    4889999999999999999987

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=93.57  E-value=0.051  Score=43.14  Aligned_cols=24  Identities=8%  Similarity=0.066  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.++
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=93.56  E-value=0.031  Score=43.18  Aligned_cols=25  Identities=16%  Similarity=-0.126  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ..-|.|+|.+|+|||||...+....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4678899999999999999887643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.54  E-value=0.021  Score=48.51  Aligned_cols=22  Identities=5%  Similarity=0.018  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|++|+|||||.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            5899999999999999999865

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.51  E-value=0.06  Score=44.07  Aligned_cols=25  Identities=8%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ....|+|+|.+|+|||||...+...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            3567899999999999999988754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.50  E-value=0.04  Score=44.63  Aligned_cols=22  Identities=18%  Similarity=-0.043  Sum_probs=18.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.|.+.|.||+||||+|..+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~   28 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAH   28 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            3477889999999999877765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.49  E-value=0.044  Score=43.76  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-|.|+|.+|+|||||...+..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            356799999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=93.48  E-value=0.033  Score=44.18  Aligned_cols=26  Identities=8%  Similarity=-0.082  Sum_probs=22.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ....|+|+|..|+|||||...+....
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            45678999999999999999998754

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=93.45  E-value=0.11  Score=47.51  Aligned_cols=58  Identities=10%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCH-HHHHHHH
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDF-GKILDDI  217 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~-~~il~~i  217 (261)
                      .++.|..- .+-.-++|.|..|+|||+|++.+.+..    +-+.++++   -+.+..+. .+++.++
T Consensus       217 vID~l~Pi-gkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~---~iGER~~Ev~e~~~~~  275 (588)
T 3mfy_A          217 VIDTFFPQ-AKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYI---GCGERGNEMTDVLEEF  275 (588)
T ss_dssp             HHHHHSCE-ETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEE---ECCSSSSHHHHHHHHT
T ss_pred             hhhccCCc-ccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEE---EecccHHHHHHHHHHH
Confidence            44555332 124678999999999999999887632    23567788   77766554 4455543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.43  E-value=0.042  Score=50.17  Aligned_cols=19  Identities=16%  Similarity=0.113  Sum_probs=0.0

Q ss_pred             EEEEEeCCCccHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v  183 (261)
                      +++|+|+.|+|||||++.+
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.43  E-value=0.054  Score=43.68  Aligned_cols=24  Identities=17%  Similarity=0.022  Sum_probs=19.3

Q ss_pred             CeEEEEEEeC-CCccHHHHHHHHHc
Q 046049          162 RLSVVAILDG-IGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~-gGiGKTtLa~~v~~  185 (261)
                      ..++|+|++. ||+||||+|..+..
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~   27 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAF   27 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHH
Confidence            3578999965 99999999887643

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=93.42  E-value=0.045  Score=43.52  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=16.9

Q ss_pred             EEEEE-eCCCccHHHHHHHHHc
Q 046049          165 VVAIL-DGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~Iv-G~gGiGKTtLa~~v~~  185 (261)
                      +|+|+ +-||+||||+|..+..
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~   23 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSA   23 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCcHHHHHHHHHH
Confidence            67776 5699999999987754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.37  E-value=0.15  Score=52.80  Aligned_cols=87  Identities=13%  Similarity=-0.020  Sum_probs=59.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCcccc-CCCHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVII-GEDYQLKKS  240 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~-~~~~~~l~~  240 (261)
                      .-++|-|+|+.|+||||||.++..  ..+..=..++|+   ...+.+++..     ++.++.+.+.---. +...++..+
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i---~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFI---DAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE---CTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEE---ecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHH
Confidence            457999999999999999998876  344444678899   8888877654     77777765531000 124455555


Q ss_pred             HHHHhcc-CCeEEEEeecC
Q 046049          241 ILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       241 ~l~~~L~-~kr~LlVlDDV  258 (261)
                      .+...++ +.--+||+|-|
T Consensus      1500 ~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A         1500 ICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp             HHHHHHHHTCCSEEEESCS
T ss_pred             HHHHHHHcCCCCEEEEccH
Confidence            5666664 45568888865

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.37  E-value=0.047  Score=49.68  Aligned_cols=24  Identities=0%  Similarity=0.023  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.+.|+.|+||||+|+.+..
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEecccCCCCHHHHHHHHHH
Confidence            457899999999999999999977

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.35  E-value=0.043  Score=49.98  Aligned_cols=22  Identities=5%  Similarity=-0.100  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..++|+|+.|+|||||.+.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999998875

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=93.32  E-value=0.092  Score=49.18  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=36.5

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHH-HHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHH
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTA-FAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDII  218 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~  218 (261)
                      .+.+.+...|...    .+.-|.||+|.|||+ ++..|+.  .++.  ..++.|   +...+.....++..+.
T Consensus       193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv---~a~TN~AvD~i~erL~  254 (646)
T 4b3f_X          193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLC---CAPSNIAVDNLVERLA  254 (646)
T ss_dssp             HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEE---EESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEE---EcCchHHHHHHHHHHH
Confidence            3444555555432    366789999999997 5555554  2222  235666   6555555666666654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.28  E-value=0.035  Score=51.59  Aligned_cols=24  Identities=17%  Similarity=0.066  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            357999999999999999999965

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=93.23  E-value=0.049  Score=44.79  Aligned_cols=25  Identities=12%  Similarity=0.009  Sum_probs=19.5

Q ss_pred             CCeEEEEEEeC-CCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDG-IGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~-gGiGKTtLa~~v~~  185 (261)
                      ...++|+|++. ||+||||+|..+..
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~   50 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILAT   50 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence            35789999754 99999999987754

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=93.20  E-value=0.038  Score=44.61  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=17.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|+|.|-||+||||+|..+..
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~   22 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIK   22 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHH
Confidence            367789999999999987754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.19  E-value=0.055  Score=50.00  Aligned_cols=24  Identities=8%  Similarity=-0.130  Sum_probs=21.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|.|.|++|+||||+|+.+..
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=93.16  E-value=0.046  Score=45.37  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|+|+|.+|+|||||...++..
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999987653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=93.16  E-value=0.05  Score=42.60  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=17.9

Q ss_pred             EEEEEE-eCCCccHHHHHHHHHc
Q 046049          164 SVVAIL-DGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~Iv-G~gGiGKTtLa~~v~~  185 (261)
                      ++|+|+ +-||+||||+|..+..
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~   24 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIAT   24 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH
Confidence            688888 5599999999987644

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=93.15  E-value=0.058  Score=44.13  Aligned_cols=22  Identities=5%  Similarity=-0.138  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|+.|+||||+|+.+-.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~   23 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.15  E-value=0.049  Score=47.39  Aligned_cols=25  Identities=8%  Similarity=0.018  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +..+|+|+|.+|+|||||.+.+...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            5678999999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.10  E-value=0.067  Score=51.08  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+.++|++|+|||+||+.+.+
T Consensus       521 ~~~~Ll~Gp~GtGKT~lA~ala~  543 (758)
T 3pxi_A          521 IGSFIFLGPTGVGKTELARALAE  543 (758)
T ss_dssp             SEEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=93.10  E-value=0.087  Score=43.81  Aligned_cols=24  Identities=8%  Similarity=0.076  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457899999999999999998764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=93.08  E-value=0.063  Score=43.33  Aligned_cols=23  Identities=9%  Similarity=-0.018  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+|+|.|+.|+||||+|+.+..
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~   36 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAE   36 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHH
Confidence            47999999999999999998866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-08

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 33/168 (19%)

Query: 101 SKIIDIRNRMEQLPPSDNDFDINERRDKLIHLLIEGQPRVDESEFERGREELFDLLIEGP 160
            +++D +  +  +P     +      D++I  L E               + F L + G 
Sbjct: 4   RQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEM-----------CDLDSFFLFLHGR 52

Query: 161 PRLSVVAILDGIGFDMTAFAADAFNNNH--VKFYFDCHAWVKNLSVSIAYDFGKILDDII 218
                       G   +  A+ A + +   +   +D   W+     S             
Sbjct: 53  A-----------GSGKSVIASQALSKSDQLIGINYDSIVWL---KDSGTAPKSTFDLFTD 98

Query: 219 KSVMPPSRV------SVIIGEDYQLKKSILRDYLTDKKYFIVLDDVFD 260
             +M  S        SV       LK+ I    +       V DDV  
Sbjct: 99  ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.85
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.52
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.23
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.01
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.79
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.56
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.54
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.53
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.51
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.51
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.5
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.47
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.42
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.42
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.41
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.4
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.4
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.35
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.35
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.34
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.33
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.29
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.28
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.27
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.25
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.23
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.21
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.18
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.16
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.16
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.15
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.14
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.13
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.13
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.11
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.1
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.1
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.1
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.04
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.03
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.03
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.02
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.02
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.98
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.98
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.95
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.88
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.85
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.84
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.84
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.82
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.81
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.79
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.78
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.71
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.7
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.68
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.67
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.66
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.59
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.58
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.51
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.48
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.48
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.47
d1okkd2	207	GTPase domain of the signal recognition particle r	96.43
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.42
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.42
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.39
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.37
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.33
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.3
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.29
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.28
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.28
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.27
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.26
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.24
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.24
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.23
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.22
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.19
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.17
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.14
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.14
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.13
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.12
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.11
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.09
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.98
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.93
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.86
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.86
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.85
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.82
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.82
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.8
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.75
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.74
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.74
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.73
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.71
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.69
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.68
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.68
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.66
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.54
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.53
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.52
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.5
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.5
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.46
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.43
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.4
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.35
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.33
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.2
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.19
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.18
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.14
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.13
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.13
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.13
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.12
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.11
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.1
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.1
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.03
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.02
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.01
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.93
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.89
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.8
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.73
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.7
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.67
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.64
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.58
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.58
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.57
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.5
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.5
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.47
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.47
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.46
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.35
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.31
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.29
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.27
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.24
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.2
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.13
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.11
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.05
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.04
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.04
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.99
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.98
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.87
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.78
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	93.67
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.46
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.35
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.28
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.19
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.65
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.41
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.24
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.23
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.09
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.92
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.88
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.77
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.66
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	91.55
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.4
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.01
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.76
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.7
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.69
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.61
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.79
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	88.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.66
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	87.81
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.63
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.25
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.76
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	83.05
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.25
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	80.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	80.59
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	80.5
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.16

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=1.7e-21  Score=163.89  Aligned_cols=113  Identities=14%  Similarity=0.085  Sum_probs=87.2

Q ss_pred             hhHhHHHHHHHHhc-CCCCeEEEEEEeCCCccHHHHHHHHHcCCC--cccccceeeEEecccccCCCCHHHHHHHHHHH-
Q 046049          145 FERGREELFDLLIE-GPPRLSVVAILDGIGFDMTAFAADAFNNNH--VKFYFDCHAWVKNLSVSIAYDFGKILDDIIKS-  220 (261)
Q Consensus       145 ~~~~~~~l~~~L~~-~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~-  220 (261)
                      |+.++++|+++|.. .+....+|+|+||||+||||||+.+|++..  ...+|++++||   ++++.++...+...+... 
T Consensus        25 R~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv---~vs~~~~~~~l~~~~~~~~  101 (277)
T d2a5yb3          25 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL---KDSGTAPKSTFDLFTDILL  101 (277)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE---ECCCCSTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEE---EecCCCCHHHHHHHHHHHH
Confidence            99999999999975 345689999999999999999999998643  67789999999   999999988776655443 


Q ss_pred             --hCCCCCC--ccccCC-CHHHHHHHHHHhccCCeEEEEeecCCC
Q 046049          221 --VMPPSRV--SVIIGE-DYQLKKSILRDYLTDKKYFIVLDDVFD  260 (261)
Q Consensus       221 --l~~~~~~--~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDDVW~  260 (261)
                        ++.....  +..... +.......+.+.|.++|||+||||||+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~  146 (277)
T d2a5yb3         102 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ  146 (277)
T ss_dssp             HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred             HHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhH
Confidence              3332211  111122 344455678899999999999999997

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.52  E-value=6.1e-07  Score=72.48  Aligned_cols=106  Identities=22%  Similarity=0.186  Sum_probs=72.9

Q ss_pred             hhHhHHHHHHHHhc----CCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccce-eeEEecccccCCCCHHHHHHHHHH
Q 046049          145 FERGREELFDLLIE----GPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDC-HAWVKNLSVSIAYDFGKILDDIIK  219 (261)
Q Consensus       145 ~~~~~~~l~~~L~~----~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~vs~~~~~~~il~~i~~  219 (261)
                      |+.+++.|.++|..    .......+.|+|++|+||||+|+.+.+  .....+.. .+++   ..........++..+..
T Consensus        21 Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   95 (276)
T d1fnna2          21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYI---NGFIYRNFTAIIGEIAR   95 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEE---ETTTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEEe---cchhhhhhhhhhhhhHH
Confidence            88888888888753    234567889999999999999999988  33333332 3566   66677788888888888


Q ss_pred             HhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecCC
Q 046049          220 SVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDVF  259 (261)
Q Consensus       220 ~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDVW  259 (261)
                      ..+.....    .. ....+...+.+.+.  ....++++|++.
T Consensus        96 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  134 (276)
T d1fnna2          96 SLNIPFPR----RGLSRDEFLALLVEHLRERDLYMFLVLDDAF  134 (276)
T ss_dssp             HTTCCCCS----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGG
T ss_pred             hhhhhhhh----hccchhHHHHHHHHHHhhcccccccchhHHH
Confidence            87765441    22 55556666665553  345666677654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.23  E-value=2.9e-06  Score=68.71  Aligned_cols=105  Identities=19%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             hhHhHHHHHHHHh----cCC---CCeEEEEEEeCCCccHHHHHHHHHcCCCcccc------cceeeEEecccccCCCCHH
Q 046049          145 FERGREELFDLLI----EGP---PRLSVVAILDGIGFDMTAFAADAFNNNHVKFY------FDCHAWVKNLSVSIAYDFG  211 (261)
Q Consensus       145 ~~~~~~~l~~~L~----~~~---~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~vs~~~~~~  211 (261)
                      |+++.++|.+.+.    .+.   +...++.++|++|+||||+++.+.+.  ....      .....++   ......+..
T Consensus        21 Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~--l~~~~~~~~~~~~~~~~---~~~~~~~~~   95 (287)
T d1w5sa2          21 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYV---NAFNAPNLY   95 (287)
T ss_dssp             SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEE---EGGGCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHH--HHhhcccccCCceeeee---ccccccchh
Confidence            7888888887663    222   22345667899999999999999873  2211      1234566   667777888


Q ss_pred             HHHHHHHHHhCCCCCCccccCC-CHHHHHHHHHHhcc--CCeEEEEeecC
Q 046049          212 KILDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT--DKKYFIVLDDV  258 (261)
Q Consensus       212 ~il~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDDV  258 (261)
                      .++..+...+......    .. ....+...+.....  +...++++|.+
T Consensus        96 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~iide~  141 (287)
T d1w5sa2          96 TILSLIVRQTGYPIQV----RGAPALDILKALVDNLYVENHYLLVILDEF  141 (287)
T ss_dssp             HHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred             hHHHHHhhhccccccc----ccchHHHHHHHHHHHHHhccCccccceeEE
Confidence            8888888888765541    22 55556666665553  45667777743

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.01  E-value=8.5e-06  Score=65.53  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+++++.|.+.      ..+++.|+|++|+|||+|++.+.+
T Consensus        17 R~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          17 REKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            88888887653      236788999999999999999877

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6e-05  Score=57.99  Aligned_cols=53  Identities=8%  Similarity=-0.016  Sum_probs=37.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc----CCCcccccceeeEE
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN----NNHVKFYFDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~----~~~~~~~F~~~~wv  199 (261)
                      |+++++++++.|.....  .-+.+||.+|+|||+++..+..    ..--....+.++|.
T Consensus        27 Rd~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~   83 (195)
T d1jbka_          27 RDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             CHHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             cHHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            99999999999976542  2356899999999998766544    21112234566665

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.9e-05  Score=63.10  Aligned_cols=42  Identities=14%  Similarity=0.070  Sum_probs=31.9

Q ss_pred             hhHhHHHHHHHHhc---------------CCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIE---------------GPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---------------~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..+++|.+||..               .....+.+-++|++|+||||+|+.+.+.
T Consensus        19 ~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          19 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            56667777777743               1123567889999999999999999883

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.56  E-value=8.7e-05  Score=58.05  Aligned_cols=35  Identities=17%  Similarity=0.024  Sum_probs=26.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEE
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv  199 (261)
                      ...+-|+|++|+|||.|++.+++  .........+++
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~~   70 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYS   70 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred             CCcEEEECCCCCcHHHHHHHHHH--HhccCccceEEe
Confidence            34478999999999999999998  444444455666

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=6.9e-05  Score=58.78  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=30.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++.|..|+....  ...+-++|++|+||||+|+.+.+
T Consensus        20 ~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          20 NKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHH
Confidence            4556778888887654  34466899999999999998876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=7.5e-05  Score=58.57  Aligned_cols=39  Identities=13%  Similarity=0.017  Sum_probs=30.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++.|..|+..+.  ...+-++|++|+||||+|+.+.+
T Consensus        19 ~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          19 QNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHH
Confidence            4567788888887654  33466899999999999999977

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.1e-05  Score=58.56  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++||+|+|..|+|||||++.+.+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999999865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=6.6e-05  Score=57.07  Aligned_cols=38  Identities=13%  Similarity=-0.026  Sum_probs=28.0

Q ss_pred             hHHHHHHHHhc-CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          148 GREELFDLLIE-GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       148 ~~~~l~~~L~~-~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|++.... ...+.-+|+|.|.+|+||||||+.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34444444433 235677999999999999999999876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.50  E-value=2.3e-05  Score=58.92  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.|.|.|++|+||||||+.+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00014  Score=58.74  Aligned_cols=53  Identities=19%  Similarity=0.145  Sum_probs=36.6

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC---CCcccc-cceeeEE
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN---NHVKFY-FDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~---~~~~~~-F~~~~wv  199 (261)
                      |+++.++++..|..... . -+.+||++|+|||+++..+...   ..+... ...++|.
T Consensus        23 Rd~Ei~~l~~iL~r~~k-~-n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~   79 (268)
T d1r6bx2          23 REKELERAIQVLCRRRK-N-NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS   79 (268)
T ss_dssp             CHHHHHHHHHHHTSSSS-C-EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             hHHHHHHHHHHHhcCcc-C-CcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEE
Confidence            99999999999976542 2 3449999999999877766541   122222 3456666

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.00021  Score=60.90  Aligned_cols=53  Identities=8%  Similarity=0.030  Sum_probs=36.9

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHH----HHHHcCCCcccccceeeEE
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFA----ADAFNNNHVKFYFDCHAWV  199 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa----~~v~~~~~~~~~F~~~~wv  199 (261)
                      |+.+++++++.|.....+  -+.+||++|+|||+++    +.+.+..--..-.+.++|.
T Consensus        27 r~~ei~~~~~~L~r~~k~--n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~   83 (387)
T d1qvra2          27 RDEEIRRVIQILLRRTKN--NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS   83 (387)
T ss_dssp             CHHHHHHHHHHHHCSSCC--CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             cHHHHHHHHHHHhcCCCC--CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            999999999999865422  2256799999999966    5555542223345667776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.42  E-value=0.00026  Score=56.48  Aligned_cols=40  Identities=20%  Similarity=0.013  Sum_probs=28.2

Q ss_pred             hHhHHHHHHHHhcCC-CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGP-PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~-~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+...+++.+.... ...+-|-++|++|+|||++|+.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          22 LDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             HHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            333444445444332 3466688999999999999999988

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.41  E-value=3.8e-05  Score=57.02  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|.|.|++|+||||+|+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.41  E-value=3.9e-05  Score=56.11  Aligned_cols=22  Identities=9%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||||+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=2.2e-05  Score=57.72  Aligned_cols=22  Identities=5%  Similarity=0.125  Sum_probs=19.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.+.||+|+||||+|+.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3578889999999999999987

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.40  E-value=5e-05  Score=56.74  Aligned_cols=24  Identities=8%  Similarity=-0.130  Sum_probs=21.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +-.+|.++|++|+||||+|+.+..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999976

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00019  Score=57.63  Aligned_cols=23  Identities=17%  Similarity=0.036  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+-+-++|++|+|||+||+.+.+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            45677999999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.4e-05  Score=59.65  Aligned_cols=39  Identities=13%  Similarity=-0.014  Sum_probs=30.5

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.++.|..++....  .+.+-++|++|+||||+++.+.+
T Consensus        17 ~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          17 QDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHH
Confidence            4555777888886543  44477999999999999999987

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.00049  Score=55.55  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~  239 (261)
                      +.-++.-|.|++|+||||||..+....  +..=...+|+   .....++.+.     +++++.+.+.---... +.++..
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~--q~~g~~~vyI---DtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~  127 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFI---DAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQAL  127 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHH--HHTTCEEEEE---ESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHH--hcCCCEEEEE---ECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHH
Confidence            567899999999999999997776532  2222467899   8888888764     5666665432111122 566666


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      +.+...++ ++.-|||+|.+
T Consensus       128 ~~~~~l~~~~~~~liIiDSi  147 (269)
T d1mo6a1         128 EIADMLIRSGALDIVVIDSV  147 (269)
T ss_dssp             HHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHHhcCCCCEEEEecc
Confidence            66655554 45789999976

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.33  E-value=0.00011  Score=58.83  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=30.2

Q ss_pred             hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++...+.++.+..+   ......|-++|++|+||||||+.+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            455555555556443   23566788999999999999999988

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.29  E-value=4.3e-05  Score=56.83  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999865

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=7.9e-05  Score=57.12  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          160 PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       160 ~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++..+||.|.|++|+||||+|+.+..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999999977

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=4.2e-05  Score=58.24  Aligned_cols=24  Identities=17%  Similarity=-0.029  Sum_probs=21.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+|.++|++|+||||+|+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999976

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.25  E-value=8.7e-05  Score=56.72  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.+|.|+|++|+||||+|+.+.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=5.4e-05  Score=56.71  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00098  Score=52.55  Aligned_cols=40  Identities=18%  Similarity=-0.043  Sum_probs=30.3

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++.|..++..+. -.+.+-++|++|+||||+|+.+.+
T Consensus        17 ~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          17 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence            5666777888886543 234567999999999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.18  E-value=0.0001  Score=54.83  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++...|.|.|++|+||||+|+.+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3456789999999999999999976

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00012  Score=54.32  Aligned_cols=25  Identities=12%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+++.|.|++|+||||+|+.+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.0001  Score=56.66  Aligned_cols=23  Identities=4%  Similarity=-0.041  Sum_probs=21.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.+|.++|.+|+||||+|+++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.16  E-value=8.7e-05  Score=55.72  Aligned_cols=22  Identities=23%  Similarity=0.181  Sum_probs=20.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|.|.|++|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.16  E-value=0.00018  Score=56.52  Aligned_cols=39  Identities=15%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++.|..|+....  .+.+-++|++|+||||+|+.+.+
T Consensus        29 ~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          29 QEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHH
Confidence            5666778888887653  45577999999999999999877

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.15  E-value=0.00015  Score=53.99  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00011  Score=57.99  Aligned_cols=41  Identities=20%  Similarity=0.059  Sum_probs=29.0

Q ss_pred             hhHhHHHHHHHHhcC---CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEG---PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~---~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.++.|..++...   ....+-+-++|++|+||||+|+.+.+
T Consensus        14 qe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          14 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            455566666666321   22344567999999999999999987

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00026  Score=56.88  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+-+-++|++|+|||+||+.+.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            45578999999999999999988

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00017  Score=56.90  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             hhHhHHHHHHHHhc---CCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIE---GPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~---~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -++.+++|..++..   .....+-+-++|++|+||||+|+.+.+
T Consensus        14 q~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          14 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            34445555555532   222345566899999999999999987

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00019  Score=57.37  Aligned_cols=23  Identities=17%  Similarity=0.089  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+-+-++|++|+|||+||+.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            45688999999999999999998

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=0.00011  Score=54.64  Aligned_cols=22  Identities=9%  Similarity=-0.058  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +||+|+|..|+|||||+..+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=9.3e-05  Score=55.18  Aligned_cols=20  Identities=5%  Similarity=0.009  Sum_probs=17.3

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.++||+|+||||+++.+..
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            34559999999999999987

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.10  E-value=0.00011  Score=54.98  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+|+|++|+|||||++.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHh
Confidence            389999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00098  Score=51.69  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=18.7

Q ss_pred             CCeEEEEEEeCCCccHHH-HHHHH
Q 046049          161 PRLSVVAILDGIGFDMTA-FAADA  183 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTt-La~~v  183 (261)
                      ....||.++|+.|+|||| +||..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999999 44544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.04  E-value=0.0001  Score=54.79  Aligned_cols=20  Identities=10%  Similarity=0.165  Sum_probs=18.3

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.++||+|+||||+++.+..
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67789999999999999977

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.03  E-value=0.00015  Score=53.90  Aligned_cols=23  Identities=4%  Similarity=0.007  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++|.|.|++|+||||+|+.+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00054  Score=55.12  Aligned_cols=88  Identities=14%  Similarity=0.004  Sum_probs=57.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccccCC-CHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVIIGE-DYQLKK  239 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~~~~-~~~~l~  239 (261)
                      +.-+++-|+|++|+|||||+..+.....  ..=...+|+   .....++..     .++.++.+.+..--... +.++..
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q--~~g~~~vyi---dtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~  121 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFI---DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQAL  121 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEE---ccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHH
Confidence            3457999999999999999988766322  222356888   888888864     35666665432111122 566666


Q ss_pred             HHHHHhcc-CCeEEEEeecC
Q 046049          240 SILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       240 ~~l~~~L~-~kr~LlVlDDV  258 (261)
                      +.+....+ ++--|||+|-+
T Consensus       122 ~~i~~l~~~~~~~liViDSi  141 (263)
T d1u94a1         122 EICDALARSGAVDVIVVDSV  141 (263)
T ss_dssp             HHHHHHHHHTCCSEEEEECG
T ss_pred             HHHHHHHhcCCCCEEEEECc
Confidence            66666554 34458899975

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00015  Score=57.48  Aligned_cols=40  Identities=13%  Similarity=-0.041  Sum_probs=28.1

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++..+.|..++.... ...-+-++|++|+||||+|+.+.+
T Consensus        16 ~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          16 NEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHH
Confidence            4555566665554332 344466999999999999998866

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00093  Score=51.51  Aligned_cols=23  Identities=9%  Similarity=0.146  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +-||+|.|..|+||||||+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.98  E-value=0.001  Score=53.59  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             HHHHhc-CC-CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCCccc
Q 046049          153 FDLLIE-GP-PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRVSVI  230 (261)
Q Consensus       153 ~~~L~~-~~-~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~~~~  230 (261)
                      ++.++. +. +.-++.-|.|++|+||||||..+.....-..  ...+|+   .....+++.     ++++++.+.+.---
T Consensus        45 lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yi---DtE~~~~~~-----~a~~~Gvd~d~i~~  114 (268)
T d1xp8a1          45 LDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFI---DAEHALDPV-----YARALGVNTDELLV  114 (268)
T ss_dssp             HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEE---ESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred             HHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEE---ECCccCCHH-----HHHHhCCCchhEEE
Confidence            344554 32 4457999999999999999987765322111  357899   888888874     67777775542111


Q ss_pred             cCC-CHHHHHHHHHHhcc-CCeEEEEeecC
Q 046049          231 IGE-DYQLKKSILRDYLT-DKKYFIVLDDV  258 (261)
Q Consensus       231 ~~~-~~~~l~~~l~~~L~-~kr~LlVlDDV  258 (261)
                      ... +.++..+.+...++ ++--|||+|-+
T Consensus       115 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi  144 (268)
T d1xp8a1         115 SQPDNGEQALEIMELLVRSGAIDVVVVDSV  144 (268)
T ss_dssp             ECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred             EcCCCHHHHHHHHHHHHhcCCCcEEEEecc
Confidence            122 66666666666664 34678999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00019  Score=54.06  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...+|-++|++|+||||+|+.+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998865

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.95  E-value=0.00055  Score=53.19  Aligned_cols=24  Identities=13%  Similarity=0.054  Sum_probs=15.3

Q ss_pred             CCeEEEEEEeCCCccHHH-HHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTA-FAADAF  184 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTt-La~~v~  184 (261)
                      ....||.++|+.|+|||| +||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999 445443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.92  E-value=0.0011  Score=51.17  Aligned_cols=22  Identities=18%  Similarity=0.021  Sum_probs=17.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      +.+||.++|+.|+||||.+-++
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKL   30 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKL   30 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            4689999999999999944444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00027  Score=53.82  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|.|++|+||||+|+.+.+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999977

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.0012  Score=51.18  Aligned_cols=23  Identities=17%  Similarity=0.033  Sum_probs=18.9

Q ss_pred             CCeEEEEEEeCCCccHHH-HHHHH
Q 046049          161 PRLSVVAILDGIGFDMTA-FAADA  183 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTt-La~~v  183 (261)
                      ....||.++|+.|+|||| +||..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999 44443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00032  Score=56.53  Aligned_cols=24  Identities=21%  Similarity=0.045  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+-|-++|++|+|||+||+.+.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHH
Confidence            345677999999999999999988

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00035  Score=53.06  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=21.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...+|||.|+.|+||||+|..+-.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999997743

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00025  Score=54.93  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+||+|-||+|+||||+|+.+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35999999999999999999877

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.82  E-value=0.00026  Score=52.87  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=18.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.++||+|+||||+|+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999976

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.81  E-value=0.00035  Score=52.46  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|.|.|++|+||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6889999999999999998865

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0022  Score=49.39  Aligned_cols=39  Identities=15%  Similarity=0.020  Sum_probs=28.9

Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          146 ERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       146 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +...+++...+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus         8 ~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2           8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHH
Confidence            445677777776543 234588899999999999997654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.78  E-value=0.00038  Score=52.82  Aligned_cols=24  Identities=17%  Similarity=0.094  Sum_probs=20.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.++| |+|++|+||||+|+.+..
T Consensus         2 ~~~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHHH
Confidence            356677 789999999999998876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.71  E-value=0.00034  Score=53.12  Aligned_cols=23  Identities=9%  Similarity=-0.247  Sum_probs=20.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..|.|.|++|+||||+|+.+.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34577999999999999998876

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.70  E-value=0.00091  Score=55.42  Aligned_cols=39  Identities=15%  Similarity=0.088  Sum_probs=30.5

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....++++.+.....+..+|+|.|++|+|||||.-.+..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          35 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            345556666666666789999999999999999887754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0015  Score=53.52  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=22.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-+|||.|..|+||||+|+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4678999999999999999998876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00096  Score=55.34  Aligned_cols=37  Identities=11%  Similarity=0.032  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..++++.+.....+..+|+|.|++|+|||||...+..
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            4456666655556789999999999999999987754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.66  E-value=0.00044  Score=53.63  Aligned_cols=22  Identities=14%  Similarity=-0.083  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -+|+|-|++|+||||+|+.+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998866

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.59  E-value=0.00049  Score=51.56  Aligned_cols=20  Identities=10%  Similarity=0.042  Sum_probs=18.3

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999998865

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0014  Score=52.86  Aligned_cols=103  Identities=16%  Similarity=0.225  Sum_probs=59.9

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCC-CCHHHHHHHHHHHhCCCCCC--
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIA-YDFGKILDDIIKSVMPPSRV--  227 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~-~~~~~il~~i~~~l~~~~~~--  227 (261)
                      +.++.|..-.. -.-++|.|..|+|||+|+..+.++. .+.+=++.+++   -+.+. ....++.+++.+.-......  
T Consensus        57 raID~l~pigk-GQr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~---~iGer~~ev~~~~~~~~~~~~~~~~~~~  131 (276)
T d2jdid3          57 KVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFA---GVGERTREGNDLYHEMIESGVINLKDAT  131 (276)
T ss_dssp             HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEE---EESCCHHHHHHHHHHHHHHTSSCSSSSC
T ss_pred             eeeeeeccccC-CCEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEE---EeccChHHHHHHHHHHHhcCcccccccc
Confidence            34555543222 2458999999999999988886641 22333566777   77765 34567777777643211110  


Q ss_pred             --c----cccCC------CHHHHHHHHHHhcc---CCeEEEEeecC
Q 046049          228 --S----VIIGE------DYQLKKSILRDYLT---DKKYFIVLDDV  258 (261)
Q Consensus       228 --~----~~~~~------~~~~l~~~l~~~L~---~kr~LlVlDDV  258 (261)
                        .    ...+.      -.....-.+.+++.   ++..|+++||+
T Consensus       132 ~~tvvv~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsl  177 (276)
T d2jdid3         132 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI  177 (276)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcch
Confidence              0    00011      11222234667764   78999999996

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00077  Score=50.75  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|.|+|++|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999998876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.00059  Score=51.26  Aligned_cols=21  Identities=19%  Similarity=0.053  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|.|++|+||||+|+.+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377889999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.50  E-value=0.002  Score=50.39  Aligned_cols=89  Identities=12%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCCCC----------ccc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPSRV----------SVI  230 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~~~----------~~~  230 (261)
                      +.-.++-|.|.+|+|||+||..+..+  ...+....+|+   +...  +...+.+. +..++.....          ...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~--~~~~~~~~~~i---s~e~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   95 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILF---AYEE--SRAQLLRN-AYSWGMDFEEMERQNLLKIVCAY   95 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEE---ESSS--CHHHHHHH-HHTTSCCHHHHHHTTSEEECCCC
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH--HHHhcccccee---eccC--CHHHHHHH-HHHcCCChHHHhhcCceEEEEee
Confidence            45689999999999999999988773  44555667777   5543  33333332 2333221110          000


Q ss_pred             cCC-CHHHHHHHHHHhccC-CeEEEEeec
Q 046049          231 IGE-DYQLKKSILRDYLTD-KKYFIVLDD  257 (261)
Q Consensus       231 ~~~-~~~~l~~~l~~~L~~-kr~LlVlDD  257 (261)
                      ... ........+...+.. +--++|+|.
T Consensus        96 ~~~~~~~~~~~~i~~~i~~~~~~~vviDs  124 (242)
T d1tf7a2          96 PESAGLEDHLQIIKSEINDFKPARIAIDS  124 (242)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             cchhhHHHHHHHHHHHHHhcCCceeeeec
Confidence            112 566666666666543 445777775

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.48  E-value=0.00068  Score=51.58  Aligned_cols=23  Identities=9%  Similarity=0.166  Sum_probs=21.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++|.|.|++|+||||+|+.+..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999999877

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.48  E-value=0.00064  Score=51.15  Aligned_cols=21  Identities=10%  Similarity=0.028  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999887

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.47  E-value=0.0008  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-|.|.||+|+||||+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            445667889999999999998877

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.43  E-value=0.0037  Score=48.20  Aligned_cols=24  Identities=25%  Similarity=0.171  Sum_probs=18.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ++.+||.++|+.|+||||.+-++.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346899999999999999544443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.003  Score=48.66  Aligned_cols=22  Identities=0%  Similarity=-0.076  Sum_probs=20.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..|+|-|+.|+||||+++.+.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.0008  Score=50.96  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|.|+|++|+|||||++.+.+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.39  E-value=0.00083  Score=51.00  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=22.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+|+|-|..|+||||+++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.37  E-value=0.0011  Score=51.40  Aligned_cols=25  Identities=8%  Similarity=-0.068  Sum_probs=22.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+..+|-+.|++|+||||||+.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.33  E-value=0.00099  Score=52.71  Aligned_cols=23  Identities=13%  Similarity=-0.025  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.++.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            36999999999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00092  Score=50.04  Aligned_cols=21  Identities=10%  Similarity=-0.084  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.|.|++|+||||+|+.+..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.00063  Score=51.83  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=18.4

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|+|++|+|||||++.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999876

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00088  Score=50.52  Aligned_cols=22  Identities=9%  Similarity=0.182  Sum_probs=19.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|.|+||.|+|||||++.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.28  E-value=0.001  Score=52.32  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCcchhhHhccC
Confidence            46899999999999999998865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.00084  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.068  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            46899999999999999999976

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.27  E-value=0.0012  Score=52.89  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=18.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|+|+|-||+||||+|-.+..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH
Confidence            6899999999999999976543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0011  Score=52.46  Aligned_cols=23  Identities=4%  Similarity=-0.005  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+.-
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            46999999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0012  Score=51.97  Aligned_cols=23  Identities=9%  Similarity=0.002  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            46999999999999999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.24  E-value=0.0012  Score=52.82  Aligned_cols=23  Identities=17%  Similarity=0.086  Sum_probs=20.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            46899999999999999999954

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.23  E-value=0.0011  Score=51.70  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ||+|+|+.|+|||||...+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            899999999999999988864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.22  E-value=0.00084  Score=55.23  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=20.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+-+..+||+|+|||.||+.+.+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35566899999999999999987

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0011  Score=49.65  Aligned_cols=20  Identities=10%  Similarity=0.087  Sum_probs=17.7

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|.|++|+||||+|+.+..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45779999999999999976

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.17  E-value=0.0013  Score=51.86  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            46899999999999999999865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.14  E-value=0.0013  Score=52.68  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            46999999999999999999965

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0013  Score=52.00  Aligned_cols=23  Identities=13%  Similarity=0.083  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..++|+|+.|+|||||++.+..
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999965

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.13  E-value=0.0014  Score=51.85  Aligned_cols=24  Identities=13%  Similarity=-0.045  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-..++|+|+.|+|||||++.+..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999964

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0015  Score=52.97  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.+++|+|+.|+|||||++.+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            347899999999999999999975

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.109  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46999999999999999999965

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.09  E-value=0.0016  Score=51.45  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+++|+|+.|+|||||.+.+..
T Consensus        25 e~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCChHHHHHHHHHc
Confidence            4788999999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0057  Score=47.31  Aligned_cols=48  Identities=2%  Similarity=-0.017  Sum_probs=32.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCccccc----ceeeEEecccccCCCCHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVKFYF----DCHAWVKNLSVSIAYDFG  211 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~vs~~~~~~  211 (261)
                      +.-+++-|.|++|+|||||+..+..+......+    ...+|+   +....++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~   83 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI---DTEGTFRPV   83 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEE---ESSSCCCGG
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEE---eecchHHHH
Confidence            456799999999999999998776543222222    356777   666665543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.98  E-value=0.0015  Score=51.20  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999975

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.00084  Score=54.51  Aligned_cols=35  Identities=14%  Similarity=-0.026  Sum_probs=27.3

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++++.|..-. .-.-++|+|..|+|||+|+..+.++
T Consensus        32 r~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          32 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            5777776532 3467899999999999999888764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.93  E-value=0.0033  Score=46.47  Aligned_cols=34  Identities=9%  Similarity=-0.084  Sum_probs=24.6

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +++.+..... ..-|.++|.+|+|||||...+..+
T Consensus         3 ~~~~~~~~~k-~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCC-CCEEEEECCCCCCHHHHHHHHhCC
Confidence            4555544443 445779999999999999988553

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.027  Score=42.68  Aligned_cols=71  Identities=8%  Similarity=-0.149  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC--CcccccceeeEEecccccCCCCHHHHHHHHHHHhCCCC
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN--HVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVMPPS  225 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~--~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~~~~  225 (261)
                      ++-+..++..+  ..+-+-++|++|+||||+|..+-+.-  .-..|-| ..++.  .-+.....+.| +++.+.+....
T Consensus         3 ~~~l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~--~~~~~I~Id~I-R~i~~~~~~~~   75 (198)
T d2gnoa2           3 LETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEID--PEGENIGIDDI-RTIKDFLNYSP   75 (198)
T ss_dssp             HHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEEC--CSSSCBCHHHH-HHHHHHHTSCC
T ss_pred             HHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEe--CCcCCCCHHHH-HHHHHHHhhCc
Confidence            34444555433  47889999999999999999876521  1112223 23340  22223345544 45666665443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.89  E-value=0.0032  Score=52.78  Aligned_cols=29  Identities=17%  Similarity=0.117  Sum_probs=24.2

Q ss_pred             hcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          157 IEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       157 ~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..+.++-+.+.++||+|+|||++|+.+.+
T Consensus       148 ~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         148 VYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            33445567899999999999999999987

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.86  E-value=0.007  Score=49.71  Aligned_cols=23  Identities=9%  Similarity=-0.093  Sum_probs=20.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.++-++|++|+|||.||+.+..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            35667789999999999999988

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.86  E-value=0.0036  Score=46.28  Aligned_cols=31  Identities=13%  Similarity=0.059  Sum_probs=23.1

Q ss_pred             HhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          156 LIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       156 L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +...++.---|.++|.+|+|||||...+..+
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3333334456789999999999999988664

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.85  E-value=0.0024  Score=46.51  Aligned_cols=23  Identities=17%  Similarity=-0.019  Sum_probs=19.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCC
Q 046049          165 VVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      -|+|+|.+|+|||||.+.+.++.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37799999999999999887653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0046  Score=50.00  Aligned_cols=26  Identities=8%  Similarity=-0.035  Sum_probs=22.6

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          160 PPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       160 ~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....-+|||-|..|+|||||+..+..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            45578999999999999999988765

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.82  E-value=0.0022  Score=50.67  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            36999999999999999999975

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.0022  Score=50.60  Aligned_cols=23  Identities=9%  Similarity=-0.055  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999999975

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.80  E-value=0.0025  Score=51.42  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=18.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+.|+|.|-||+||||+|-.+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999877653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0016  Score=50.73  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.|+|-|+.|+||||+++.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.75  E-value=0.0021  Score=46.44  Aligned_cols=21  Identities=5%  Similarity=-0.170  Sum_probs=18.3

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|+|.+|+|||||...+..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999988654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.74  E-value=0.0031  Score=47.66  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+++.|+|+|.+|+|||||...+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            34678999999999999999999753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.003  Score=49.33  Aligned_cols=24  Identities=13%  Similarity=0.066  Sum_probs=21.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +++.|+|-|+-|+||||+++.+.+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            367899999999999999999876

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.73  E-value=0.0025  Score=50.77  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=21.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||++.+..
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHC
Confidence            35899999999999999999976

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.003  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+|+|+|+.|+||||+|+.+-
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            489999999999999998653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0053  Score=48.97  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHH
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      +..+++.+-.  ++.+||.+.|-||+||||+|-.+
T Consensus         8 ~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2           8 LSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             HHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHH
T ss_pred             HHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHH
Confidence            3445555543  45899999999999999976655

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.68  E-value=0.0019  Score=51.02  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            46999999999999999999965

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0026  Score=48.94  Aligned_cols=22  Identities=5%  Similarity=0.102  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|.|+||+|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999998876

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.66  E-value=0.0081  Score=48.26  Aligned_cols=90  Identities=13%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCC-HHHHHHHHHHHhCCCCCC------ccccCC--C
Q 046049          164 SVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYD-FGKILDDIIKSVMPPSRV------SVIIGE--D  234 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~-~~~il~~i~~~l~~~~~~------~~~~~~--~  234 (261)
                      .-++|+|..|+|||+|+...-.. . ..+-..++++   .+..... ..++..++.+.-......      +.....  -
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~-~-~~~~~v~V~~---~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~  142 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN-Q-QGQNVICVYV---AIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL  142 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT-C-CTTTCEEEEE---EESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred             ceEeeccCCCCChHHHHHHHHhh-h-cccCceeeee---eecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHH
Confidence            45889999999999999865442 2 2333466776   5655432 233333333221110000      000011  1


Q ss_pred             HHHHHHHHHHhc--cCCeEEEEeecC
Q 046049          235 YQLKKSILRDYL--TDKKYFIVLDDV  258 (261)
Q Consensus       235 ~~~l~~~l~~~L--~~kr~LlVlDDV  258 (261)
                      .....-.+.+++  .+|+.|+++||+
T Consensus       143 a~~~a~tiAEyfrd~G~~Vlll~Dsl  168 (276)
T d1fx0a3         143 APYTGAALAEYFMYRERHTLIIYDDL  168 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCceeEEeecc
Confidence            223444455666  479999999986

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0043  Score=45.43  Aligned_cols=21  Identities=0%  Similarity=0.050  Sum_probs=18.1

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||...+.++
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999877653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.53  E-value=0.0035  Score=47.70  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|+|-|+.|+||||+++.+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.52  E-value=0.019  Score=44.55  Aligned_cols=50  Identities=10%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCCcc----cccceeeEEecccccCCCCHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNHVK----FYFDCHAWVKNLSVSIAYDFGKI  213 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~vs~~~~~~~i  213 (261)
                      +.-+++-|.|++|+||||||..+..+....    ......+|+   .....++...+
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   87 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI---DTENTFRPERI   87 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE---ESSSCCCHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEE---eccchhHHHHH
Confidence            456899999999999999998775432111    123456777   66666665443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.022  Score=44.10  Aligned_cols=48  Identities=2%  Similarity=-0.011  Sum_probs=33.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHcCCC----cccccceeeEEecccccCCCCHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFNNNH----VKFYFDCHAWVKNLSVSIAYDFG  211 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~~~vs~~~~~~  211 (261)
                      +.-+++-|.|++|+|||++|..+..+..    ....+....|+   .....+...
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   86 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI---DTENTFRPD   86 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE---ESSSCCCHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEe---chHHHHHHH
Confidence            5668999999999999999987754211    22334566777   666666543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.50  E-value=0.0017  Score=52.64  Aligned_cols=24  Identities=4%  Similarity=0.109  Sum_probs=17.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..||+|.|.+|+||||+++.+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            356999999999999999997655

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.50  E-value=0.0037  Score=47.89  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+|||.|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998663

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.46  E-value=0.0046  Score=46.07  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=24.0

Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          151 ELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       151 ~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+.+.|......++ |.++|.+|+|||||...+..
T Consensus         6 ~~~~~l~~~~k~~K-I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_           6 SMFDKLWGSNKELR-ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             HHHGGGTTCSSCEE-EEEEEETTSSHHHHHHHTCC
T ss_pred             HHHHHHhCCCceEE-EEEECCCCCCHHHHHHHHhc
Confidence            34444444444454 55999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0029  Score=49.66  Aligned_cols=23  Identities=9%  Similarity=0.083  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            46999999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.40  E-value=0.0022  Score=51.19  Aligned_cols=23  Identities=13%  Similarity=-0.084  Sum_probs=20.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..++|+|+.|+|||||++.+..
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            46899999999999999998854

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0044  Score=45.84  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.++
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4779999999999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.35  E-value=0.0045  Score=45.22  Aligned_cols=22  Identities=9%  Similarity=-0.108  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.++
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3679999999999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.0062  Score=44.45  Aligned_cols=23  Identities=4%  Similarity=0.023  Sum_probs=19.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||...+.++
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            34789999999999999888764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0062  Score=44.76  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=18.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.....++
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3679999999999999887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0067  Score=44.24  Aligned_cols=21  Identities=10%  Similarity=0.140  Sum_probs=18.5

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||...+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.013  Score=47.98  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ....++..+|+.|+|||.||+.+..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3466889999999999999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0056  Score=45.72  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.|+|.+|+|||||+..+.++
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            34789999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0065  Score=44.49  Aligned_cols=22  Identities=9%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0065  Score=44.56  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.4

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.|+|.+|+|||||...+.++
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0069  Score=44.60  Aligned_cols=23  Identities=9%  Similarity=0.150  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||.+.+.++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45789999999999999987764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.014  Score=44.80  Aligned_cols=23  Identities=9%  Similarity=-0.148  Sum_probs=20.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -..|+|-|+-|+||||+++.+.+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHH
Confidence            36799999999999999999887

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.008  Score=44.52  Aligned_cols=25  Identities=12%  Similarity=0.104  Sum_probs=21.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..+.|+|+|.+|+|||||...+...
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.13  E-value=0.0058  Score=44.97  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||...+.++
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            34889999999999999987653

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0053  Score=49.23  Aligned_cols=23  Identities=9%  Similarity=-0.028  Sum_probs=18.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..++|.+.|-||+||||+|-.+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHH
Confidence            36788899999999999776553

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0069  Score=44.65  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||...+.++
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            34789999999999999987643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.007  Score=47.01  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .++|..|.|+-|+|||||.+.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            5789999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0074  Score=44.50  Aligned_cols=25  Identities=8%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -+..|+|+|.+|+|||||...+.+.
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            3577999999999999999999863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.10  E-value=0.0065  Score=44.70  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .|+|+|.+|+|||||...+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0081  Score=43.95  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=19.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ..-|.|+|.+|+|||||...+.++
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            346789999999999999887553

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0078  Score=45.40  Aligned_cols=23  Identities=4%  Similarity=0.095  Sum_probs=19.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.|+|.+|+|||||...+.++
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            45789999999999999987754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.0067  Score=43.57  Aligned_cols=22  Identities=14%  Similarity=-0.085  Sum_probs=19.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+-+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0068  Score=44.57  Aligned_cols=22  Identities=23%  Similarity=0.083  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.+.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4789999999999999987653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0085  Score=44.06  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.....++
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999877654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.0079  Score=43.96  Aligned_cols=22  Identities=5%  Similarity=0.200  Sum_probs=19.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0083  Score=43.93  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+.++
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0084  Score=44.05  Aligned_cols=22  Identities=5%  Similarity=0.093  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0085  Score=43.85  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.....++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0085  Score=44.01  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=18.2

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||+|.....++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999887764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0089  Score=43.72  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+.++
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999887664

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.92  E-value=0.022  Score=45.08  Aligned_cols=42  Identities=10%  Similarity=0.052  Sum_probs=32.0

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+..+.++...+...+..---|.++|..|+|||||...++..
T Consensus        14 ~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          14 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            445556666666665555567889999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0092  Score=43.97  Aligned_cols=21  Identities=5%  Similarity=0.135  Sum_probs=18.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.++|.+|+|||||+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0077  Score=44.50  Aligned_cols=24  Identities=13%  Similarity=0.253  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.|+|.+|+|||||...+.++
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhC
Confidence            445779999999999999887654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0066  Score=45.75  Aligned_cols=25  Identities=8%  Similarity=-0.013  Sum_probs=21.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-.++-|.|++|+||||||..+..+
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4579999999999999999877653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.88  E-value=0.0085  Score=44.02  Aligned_cols=23  Identities=17%  Similarity=-0.094  Sum_probs=19.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|.|+|.+|+|||||...+-.+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45779999999999999987654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0083  Score=44.34  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +--|.|+|..|+|||||...+.++
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            345889999999999999987654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.85  E-value=0.0079  Score=46.34  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=18.8

Q ss_pred             EEEEEE-eCCCccHHHHHHHHHc
Q 046049          164 SVVAIL-DGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~Iv-G~gGiGKTtLa~~v~~  185 (261)
                      +||+|. |-||+||||+|..+..
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~   24 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGV   24 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHH
Confidence            789999 6699999999987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.80  E-value=0.0079  Score=44.56  Aligned_cols=22  Identities=0%  Similarity=-0.040  Sum_probs=19.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.008  Score=45.46  Aligned_cols=23  Identities=9%  Similarity=-0.031  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.|.|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999988754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.0058  Score=45.39  Aligned_cols=20  Identities=10%  Similarity=0.031  Sum_probs=18.5

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |+|+|.+|+|||||...+.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.01  Score=43.38  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||+|......+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3679999999999999887654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.70  E-value=0.012  Score=43.19  Aligned_cols=42  Identities=12%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             hhHhHHHHHHHHhcC-CCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          145 FERGREELFDLLIEG-PPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~-~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...--++|-+.|... ...-.+|.+.|.=|+||||+++.+.+.
T Consensus        14 t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          14 MLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence            444455566666432 234579999999999999999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.67  E-value=0.015  Score=42.68  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.-|.++|.+|+|||||...+.++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            567889999999999999987553

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.64  E-value=0.03  Score=42.96  Aligned_cols=25  Identities=16%  Similarity=0.058  Sum_probs=21.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          161 PRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.-.++-|.|.+|+|||++|..+..
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3458999999999999999988864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.012  Score=43.18  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=19.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .--|.|+|.+|+|||+|.....++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            345899999999999999877553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.0087  Score=45.69  Aligned_cols=22  Identities=14%  Similarity=-0.035  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +.|+|-|+.|+||||+++.+..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.0095  Score=45.23  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||||...+..+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999888654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.58  E-value=0.01  Score=43.34  Aligned_cols=21  Identities=10%  Similarity=-0.031  Sum_probs=17.8

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||...+..+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            568999999999999877553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.01  Score=43.85  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.|+|.+|+|||+|.....++
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.013  Score=42.99  Aligned_cols=22  Identities=9%  Similarity=0.146  Sum_probs=18.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|..|+|||+|.....++
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999876553

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.50  E-value=0.0071  Score=45.05  Aligned_cols=21  Identities=5%  Similarity=-0.054  Sum_probs=18.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+|+|.+++|||||...+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.013  Score=43.67  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.|+|.+|+|||+|.....++
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            34889999999999999887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.013  Score=43.03  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|..|+|||||.....++
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678899999999999987764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.46  E-value=0.011  Score=45.97  Aligned_cols=22  Identities=5%  Similarity=-0.138  Sum_probs=20.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .+|+|.|..|+||||+|+.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998855

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.014  Score=43.31  Aligned_cols=23  Identities=9%  Similarity=0.001  Sum_probs=19.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.|+|.+|+|||+|...+..+
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999877654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.014  Score=43.06  Aligned_cols=21  Identities=10%  Similarity=0.214  Sum_probs=18.4

Q ss_pred             EEEEeCCCccHHHHHHHHHcC
Q 046049          166 VAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~~  186 (261)
                      |.++|.+|+|||||.+.+.++
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.31  E-value=0.013  Score=45.19  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=18.5

Q ss_pred             EEEEEE-eCCCccHHHHHHHHHc
Q 046049          164 SVVAIL-DGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~Iv-G~gGiGKTtLa~~v~~  185 (261)
                      +||+|+ +-||+||||+|..+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~   25 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSV   25 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHH
Confidence            689999 5599999999987754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.016  Score=43.09  Aligned_cols=22  Identities=9%  Similarity=0.034  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|..|+|||+|.+.+.++
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999877654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.015  Score=49.94  Aligned_cols=50  Identities=14%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcCCCccccc---ceeeEEecccc-cCCCCHHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAFNNNHVKFYF---DCHAWVKNLSV-SIAYDFGKILDDIIK  219 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~v-s~~~~~~~il~~i~~  219 (261)
                      =|-++||.|+|||.||+.+..  .+.-.|   ++.-+.   .+ --.-+++.++++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk--~l~VPFv~~daT~fT---eaGYvG~DVesii~~L~~  104 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFT---EVGYVGKEVDSIIRDLTD  104 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH--HTTCCEEEEEGGGGC-------CCCCTHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH--HhCCCEEEeecceee---ecceeecchhHHHHHHHH
Confidence            467889999999999999977  333334   222222   11 113466777766654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.017  Score=42.47  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=20.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .+--|.++|.+|+|||||...+.++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3455889999999999999776543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.013  Score=43.14  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=19.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ..-|.++|.+|+|||||.+.+..
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            34578999999999999988754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.20  E-value=0.016  Score=43.08  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||...+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.015  Score=42.01  Aligned_cols=21  Identities=10%  Similarity=-0.035  Sum_probs=18.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+++|.+|+|||||...+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367999999999999988864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.013  Score=43.93  Aligned_cols=19  Identities=11%  Similarity=0.106  Sum_probs=17.0

Q ss_pred             EEEEEeCCCccHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v  183 (261)
                      -|.++|.+|+|||||....
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999999877

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.0084  Score=44.17  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=17.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||||.....++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778999999999999876553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.018  Score=43.03  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=18.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      -|.++|.+|+|||+|.....++
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999998776554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.015  Score=43.15  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=19.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|+|+|.+|+|||||...+.+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            34799999999999999888753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.99  E-value=0.011  Score=43.46  Aligned_cols=32  Identities=6%  Similarity=-0.023  Sum_probs=23.4

Q ss_pred             HHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          153 FDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       153 ~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++.+.+. ..++ |.++|.+|+|||||.+.+.++
T Consensus         4 ~~~~~~~-k~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_           4 LSKIFGN-KEMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             HHHHHTT-CCEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             hhhhhCC-CeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            3444433 3466 558999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.033  Score=44.55  Aligned_cols=33  Identities=15%  Similarity=0.061  Sum_probs=27.3

Q ss_pred             HHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          154 DLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       154 ~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +.|..-+..+.||+|+|+-+.||+||...++..
T Consensus        23 ~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          23 KILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            444444567999999999999999999999874

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.011  Score=43.45  Aligned_cols=24  Identities=13%  Similarity=-0.128  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..-|+|+|.+++|||||.+.+..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999998755

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.87  E-value=0.015  Score=43.12  Aligned_cols=21  Identities=5%  Similarity=-0.096  Sum_probs=17.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.++|-+|+|||+|.+..-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            367899999999999987643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.017  Score=42.75  Aligned_cols=23  Identities=4%  Similarity=0.044  Sum_probs=19.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      --|.++|.+|+|||||.....++
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999877653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.029  Score=43.49  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcC
Q 046049          149 REELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       149 ~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ++.|.++|.+     +...++|.+|+|||||...+..+
T Consensus        86 ~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcch
Confidence            5667777732     46678999999999999999764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.67  E-value=0.032  Score=44.80  Aligned_cols=33  Identities=21%  Similarity=0.075  Sum_probs=22.4

Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          152 LFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       152 l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .++.|..- ..-.-++|.|.+|+|||+|+..+..
T Consensus        58 aID~l~pi-g~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          58 AVDSLVPI-GRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHHHSCC-BTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             EEecccCc-cCCCEEEeecCCCCChHHHHHHHHH
Confidence            34445332 1235678999999999999876654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.46  E-value=0.025  Score=44.53  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=26.2

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..-.+++..+...+    .-|.|.|..|+|||++|+.++.
T Consensus         9 ~~~~~~~~~~~a~~~----~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           9 MKEILEKIKKISCAE----CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             HHHHHHHHHHHTTCC----SCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC----CCEEEECCCCcCHHHHHHHHHH
Confidence            555555555543322    2368899999999999999976

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.022  Score=42.39  Aligned_cols=21  Identities=10%  Similarity=-0.039  Sum_probs=17.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|.++|.+|+|||+|......
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999987744

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.33  E-value=0.013  Score=48.19  Aligned_cols=22  Identities=9%  Similarity=0.057  Sum_probs=19.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+-+-+.|.+|+||||||+.+-
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHH
T ss_pred             CCeEEEECCCCccHHHHHHHHH
Confidence            3467899999999999999774

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.28  E-value=0.02  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...++..+|+.|+|||.||+.+..
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchHHHHHHHHHH
Confidence            456889999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=0.013  Score=43.05  Aligned_cols=22  Identities=9%  Similarity=0.012  Sum_probs=9.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      --|.++|.+|+|||||...+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4478999999999999976654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.11  E-value=0.082  Score=41.58  Aligned_cols=54  Identities=11%  Similarity=0.078  Sum_probs=31.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      -.++.|.|.+|+||||++..+..+......+. ..++     |-..+...+...++....
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~-v~~~-----s~E~~~~~~~~r~~~~~~   88 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLA-----MLEESVEETAEDLIGLHN   88 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEE-----ESSSCHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcccc-eeEe-----eeccchhhHHhHHHHHhh
Confidence            35788999999999999877654211122222 2233     333445555555554433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.82  E-value=0.028  Score=43.26  Aligned_cols=22  Identities=5%  Similarity=-0.074  Sum_probs=18.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ..-|.++|.+|+|||||.+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            3567899999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.0097  Score=42.99  Aligned_cols=21  Identities=10%  Similarity=0.129  Sum_probs=18.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+++|.+|+|||||...+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.65  E-value=0.031  Score=42.63  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=19.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHH
Q 046049          161 PRLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       161 ~~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      +.-.++-|.|.+|+|||+||..+
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHH
Confidence            34578899999999999999654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.41  E-value=0.062  Score=44.11  Aligned_cols=24  Identities=4%  Similarity=-0.047  Sum_probs=21.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +-.|.|=|+-|+||||+++.+.+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            567888899999999999999883

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.35  E-value=0.043  Score=43.85  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHH
Q 046049          162 RLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +++=|+|+|.+|.|||||+-.+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHH
Confidence            57889999999999999998774

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.042  Score=43.24  Aligned_cols=21  Identities=19%  Similarity=0.120  Sum_probs=17.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      .+..|+|.+|+|||||+..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            467799999999999987654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.23  E-value=0.038  Score=45.22  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=18.4

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |.|.|..|+||||+.+.+..
T Consensus       169 ili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGG
T ss_pred             EEEEeeccccchHHHHHHhh
Confidence            78899999999999999876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.09  E-value=0.039  Score=42.54  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ++|+|+|-...|||||...+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            5799999999999999987753

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.051  Score=40.89  Aligned_cols=22  Identities=5%  Similarity=-0.106  Sum_probs=17.8

Q ss_pred             EEEEEEeCC-CccHHHHHHHHHc
Q 046049          164 SVVAILDGI-GFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~g-GiGKTtLa~~v~~  185 (261)
                      +.+-|.|-| |+||||++-.+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            467899998 9999997776654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.88  E-value=0.046  Score=40.58  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=18.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-|.|.|.+|+||||||..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999988765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.78  E-value=0.072  Score=44.24  Aligned_cols=24  Identities=17%  Similarity=0.113  Sum_probs=20.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHc
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      ...-|-.+||.|+|||-||+.+..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            455688889999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.77  E-value=0.06  Score=42.77  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHH
Q 046049          163 LSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      ++-|+|+|..|.|||||+-.+.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHH
Confidence            4678999999999999998773

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.66  E-value=0.055  Score=40.17  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-+.|.|.+|+||||||..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4577899999999999988765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=91.55  E-value=0.051  Score=40.06  Aligned_cols=21  Identities=14%  Similarity=0.127  Sum_probs=19.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|+|+|.+.+|||||...+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999998864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.40  E-value=0.05  Score=44.56  Aligned_cols=23  Identities=22%  Similarity=0.005  Sum_probs=20.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      +..|+|=|.-|+||||+++.+.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            55689999999999999998865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.01  E-value=0.065  Score=39.48  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=18.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHc
Q 046049          164 SVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-+.|.|.+|+||||||-....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4577999999999999977665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.76  E-value=0.097  Score=39.58  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .-.-+..+..+|... ++-.-+.++|+++.|||++|..+.+
T Consensus        36 ~~~Fl~~l~~~l~~~-PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          36 FITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-CCceEEEEECCCCccHHHHHHHHHH
Confidence            445566777777554 5568889999999999999987643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.023  Score=42.03  Aligned_cols=20  Identities=20%  Similarity=0.180  Sum_probs=16.9

Q ss_pred             EEEEEeCCCccHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +..|+|+.|+||||+..+++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45578999999999998874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.69  E-value=0.13  Score=40.63  Aligned_cols=39  Identities=5%  Similarity=-0.041  Sum_probs=29.7

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHc
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .....+..+|....++-..+-++|+|+.|||+++..+..
T Consensus        88 ~f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            334456666765556678888999999999999988754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.063  Score=44.54  Aligned_cols=32  Identities=19%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             HhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHH
Q 046049          147 RGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       147 ~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v  183 (261)
                      ..+..+...+.     -++..|.|++|.||||++..+
T Consensus       152 ~Q~~A~~~al~-----~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         152 WQKVAAAVALT-----RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             HHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHH
T ss_pred             HHHHHHHHHHc-----CCeEEEEcCCCCCceehHHHH
Confidence            34445554442     257888999999999987544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.61  E-value=0.67  Score=38.58  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             hhHhHHHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHHcCC-C-----------cccccceeeEEeccccc--CCCCH
Q 046049          145 FERGREELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAFNNN-H-----------VKFYFDCHAWVKNLSVS--IAYDF  210 (261)
Q Consensus       145 ~~~~~~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~~~~-~-----------~~~~F~~~~wv~~~~vs--~~~~~  210 (261)
                      .....+.+.+++..   ..++|-|.|+.|.||||....+.+.. .           +...++...++   .+.  ...+.
T Consensus       143 ~~~~~~~l~~l~~~---~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~---~v~~~~~~~~  216 (401)
T d1p9ra_         143 TAHNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT---QVNPRVDMTF  216 (401)
T ss_dssp             CHHHHHHHHHHHTS---SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE---ECBGGGTBCH
T ss_pred             cHHHHHHHHHHHhh---hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCee---eecCCcCCCH
Confidence            44445555555433   36899999999999999887765511 1           01112223333   332  33455


Q ss_pred             HHHHHHHHHHhCCCCCCccccCC--CHHHHHHHHHHhccCCeE
Q 046049          211 GKILDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTDKKY  251 (261)
Q Consensus       211 ~~il~~i~~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~  251 (261)
                      ...++.++++=.    +.--+++  |.+.....+...+.|.-+
T Consensus       217 ~~~l~~~lR~dP----Dvi~igEiRd~~ta~~a~~aa~tGhlV  255 (401)
T d1p9ra_         217 ARGLRAILRQDP----DVVMVGEIRDLETAQIAVQASLTGHLV  255 (401)
T ss_dssp             HHHHHHHGGGCC----SEEEESCCCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhhcC----CEEEecCcCChHHHHHHHHHHhcCCeE
Confidence            555555554422    1111233  666666666666666543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.79  E-value=0.13  Score=42.02  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=20.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHcC
Q 046049          163 LSVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      +-.|+|=|.-|+||||+++.+.+.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            345888899999999999999773

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.82  E-value=0.11  Score=39.17  Aligned_cols=19  Identities=16%  Similarity=0.195  Sum_probs=17.3

Q ss_pred             EEEEeCCCccHHHHHHHHH
Q 046049          166 VAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~  184 (261)
                      |+|+|-.+.|||||+.++.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999998774

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.76  E-value=0.14  Score=42.86  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=20.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHc
Q 046049          163 LSVVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       163 ~~vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      .--|+|+|.+|+|||||...+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34589999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.66  E-value=0.053  Score=42.06  Aligned_cols=22  Identities=5%  Similarity=0.030  Sum_probs=18.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHcC
Q 046049          165 VVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      ...++|.+|+|||||...+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            3458899999999999999765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.56  E-value=0.12  Score=41.08  Aligned_cols=21  Identities=5%  Similarity=-0.069  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHc
Q 046049          165 VVAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~~  185 (261)
                      -|||||++.+|||||-..+-+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            589999999999999887754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.22  E-value=0.087  Score=41.78  Aligned_cols=16  Identities=25%  Similarity=0.279  Sum_probs=13.0

Q ss_pred             EEEEEeCCCccHHHHH
Q 046049          165 VVAILDGIGFDMTAFA  180 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa  180 (261)
                      .+.|.|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3668899999999843

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.20  E-value=0.13  Score=41.20  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=20.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHcC
Q 046049          164 SVVAILDGIGFDMTAFAADAFNN  186 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~~~  186 (261)
                      .-|||+|.+.+|||||-..+-+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999888753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.81  E-value=0.18  Score=41.38  Aligned_cols=34  Identities=3%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             HHHHHHHhcCCCCeEEEEEEeCCCccHHHHHHHHH
Q 046049          150 EELFDLLIEGPPRLSVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       150 ~~l~~~L~~~~~~~~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +.|.+++. ...+++=|+|+|-.|.|||||+-.+.
T Consensus         5 ~~~~~lm~-~~~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2           5 DQMRSLMD-KVTNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             HHHHHHHH-CGGGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             HHHHHHhc-CcccCcEEEEEeCCCCcHHHHHHHHH
Confidence            34444443 44578889999999999999998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.63  E-value=0.12  Score=41.34  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=12.5

Q ss_pred             EEEEeCCCccHHHHH
Q 046049          166 VAILDGIGFDMTAFA  180 (261)
Q Consensus       166 i~IvG~gGiGKTtLa  180 (261)
                      +-|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            567899999999844

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.51  E-value=0.18  Score=40.55  Aligned_cols=20  Identities=10%  Similarity=0.150  Sum_probs=18.2

Q ss_pred             EEEEeCCCccHHHHHHHHHc
Q 046049          166 VAILDGIGFDMTAFAADAFN  185 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~~  185 (261)
                      |||+|.+.+|||||-..+-+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            89999999999999998844

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.25  E-value=0.25  Score=38.90  Aligned_cols=26  Identities=12%  Similarity=0.031  Sum_probs=22.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNN  187 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~  187 (261)
                      ..--++|+|++.+||+||...+....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            44569999999999999999998753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.76  E-value=0.48  Score=32.58  Aligned_cols=52  Identities=10%  Similarity=-0.068  Sum_probs=32.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHcCCCcccccceeeEEecccccCCCCHHHHHHHHHHHhC
Q 046049          162 RLSVVAILDGIGFDMTAFAADAFNNNHVKFYFDCHAWVKNLSVSIAYDFGKILDDIIKSVM  222 (261)
Q Consensus       162 ~~~vi~IvG~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~vs~~~~~~~il~~i~~~l~  222 (261)
                      +.++.-|+++.|.|||+++-..+..      ...++.+   .+....-.....+.+.+.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli---~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLV---LNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEE---EESCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEE---EcChHHHHHHHHHHHHHHhh
Confidence            4678889999999999988665542      2345555   44443333444444444443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.05  E-value=0.24  Score=39.22  Aligned_cols=20  Identities=20%  Similarity=0.162  Sum_probs=17.3

Q ss_pred             EEEEEEeCCCccHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v  183 (261)
                      ++-.|+|+.|+||||+..++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            36689999999999998766

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=81.25  E-value=0.43  Score=35.59  Aligned_cols=19  Identities=16%  Similarity=0.202  Sum_probs=17.2

Q ss_pred             EEEEeCCCccHHHHHHHHH
Q 046049          166 VAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v~  184 (261)
                      |+|+|-...|||||+..+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~   24 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAIT   24 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8899999999999998764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.98  E-value=0.48  Score=35.94  Aligned_cols=18  Identities=0%  Similarity=0.198  Sum_probs=16.3

Q ss_pred             EEEEeCCCccHHHHHHHH
Q 046049          166 VAILDGIGFDMTAFAADA  183 (261)
Q Consensus       166 i~IvG~gGiGKTtLa~~v  183 (261)
                      |+|+|-.+.|||||+..+
T Consensus         6 i~viGHVd~GKTTL~~~L   23 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRL   23 (224)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHH
Confidence            789999999999999765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.59  E-value=0.43  Score=39.24  Aligned_cols=20  Identities=10%  Similarity=0.132  Sum_probs=17.2

Q ss_pred             EEEEEEeCCCccHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADA  183 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v  183 (261)
                      ++-.|+|+.|+||||+.-++
T Consensus        26 ~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            35668999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.50  E-value=0.48  Score=34.94  Aligned_cols=20  Identities=5%  Similarity=0.132  Sum_probs=17.7

Q ss_pred             EEEEEeCCCccHHHHHHHHH
Q 046049          165 VVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       165 vi~IvG~gGiGKTtLa~~v~  184 (261)
                      -|+|+|-...|||||...+-
T Consensus         7 nIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeccCCcHHHHHHHHH
Confidence            47999999999999999884

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=0.48  Score=39.41  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=17.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHH
Q 046049          164 SVVAILDGIGFDMTAFAADAF  184 (261)
Q Consensus       164 ~vi~IvG~gGiGKTtLa~~v~  184 (261)
                      +.+.|+|..|+|||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            468999999999999876443