Citrus Sinensis ID: 046050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
Protein Sequence
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccEEcccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEccHHHHHccccEEEcccccccccccHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccEEEcccccccHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHcccccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHHcccccEEEEEccccccccccHHHHHHHHEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccccccccccccccHHHcccccccccccccccccccccccccEEEEEccccccccccHHHHHcccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHcccc
Coil and Loop (DISEMBL)
MNVSSLLQSlwtpfpnletlELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKhlsmrncylygtsdfQGLCELVHLQElhigynniggtlpwCLVNMtslrildiasnqitgnisssplryLTSLEELRVsnnqfqipisfepffnhsklkkfygqknrlfveieshsltpkfqlqnislsgcrcdftfprflyyqhelryvdlshmnlrgefpnwlLENNKELETLLLANnslsgffqmpvnplkqlttidvsknfiqghiptgigaflprlehfnisrnvlngsipcslhmtmgcFSLQILALSnnslqghifsrsfnlTNLVTLQldanqftggipenllncsllgglylsdnhisgkipkwlgnlsnlvdiimpnnhlegpipanlcklnflTVLDLevnnisgslpscfsswlltQVHLSRNKIEGQLEDVFGDILVTLDLSynrfsgripnwidKLSHLSYLILAnnnlegevPVQLCLLKQlqlidlshnnlsgtipsclyktalgegnydsaaptsegnygasspaageavspsgsstmrkeesvefrtkntsyYYQGRILKIMFGLDlscnkltgeipfqiGYLNMIRALNLShnnlmgtipstfshlsQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHnnlsgkvpdrvgqfatftensydgnsllcgqplsescypngspnvsvsneedddnfidmGSFYITFIISYVIVILGIFGVlyvnpywrRRWFYLIETYIAFCYYLLVdhlipprfclgnk
Flexible Loop (DISEMBL)
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAsnqitgnissSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASspaageavspsgsstmrkeesvefrtkntsyyYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Low Complexity Region (SEG)
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPnwllennkeletlllannSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEnllncsllgglylsDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVqlcllkqlqlidlSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Disordered region (IsUnstruct)
******LQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE*******************************************KNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCG*************************FIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCL***
Disordered Region (DISOPRED)
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGN***AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQ****************************GSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCL***
Disordered Region (DISEMBL)
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPT********************************RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Disordered Region (DISPRO)
**VSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVS****EDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHLIPPRFCLGNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	779	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.848	0.529	0.318	2e-64
Q9FL28	1173	LRR receptor-like serine/	no	no	0.792	0.526	0.319	2e-63
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.845	0.526	0.300	9e-63
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.911	0.588	0.292	3e-56
Q9LJF3	1164	Receptor-like protein kin	no	no	0.874	0.585	0.300	6e-56
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.908	0.586	0.295	1e-55
Q9LHP4	1141	Receptor-like protein kin	no	no	0.749	0.511	0.331	6e-55
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.845	0.565	0.286	6e-53
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.840	0.547	0.302	5e-52
Q9C9H7	847	Receptor-like protein 12	no	no	0.795	0.731	0.290	6e-52

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 233/732 (31%), Positives = 358/732 (48%), Gaps = 71/732 (9%)

Query: 16  NLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
           N+ +L + D  L       L N  NL++L L    L       +  L  V+ L +++ YL
Sbjct: 144 NIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYL 203

Query: 70  YGTSDFQ-GLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
            G    + G C    L       N + GT+P  L  + +L IL++A+N +TG I S  L 
Sbjct: 204 EGPIPAELGNCS--DLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ-LG 260

Query: 129 YLTSLEELRVSNNQFQ--IPISF---------------------EPFFNHSKLKKFYGQK 165
            ++ L+ L +  NQ Q  IP S                      E F+N S+L       
Sbjct: 261 EMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N L   +     +    L+ + LSG +     P  L     L+ +DLS+ +L G  P  L
Sbjct: 321 NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEAL 380

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
            E   EL  L L NN+L G     ++ L  L  + +  N ++G +P  I A L +LE   
Sbjct: 381 FEL-VELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA-LRKLEVLF 438

Query: 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG 345
           +  N  +G IP  +     C SL+++ +  N  +G I      L  L  L L  N+  GG
Sbjct: 439 LYENRFSGEIPQEIG---NCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG 495

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
           +P +L NC  L  L L+DN +SG IP   G L  L  +++ NN L+G +P +L  L  LT
Sbjct: 496 LPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLT 555

Query: 406 VLDLEVNNISGSL-PSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGR 462
            ++L  N ++G++ P C SS  L+   ++ N  E ++    G+   L  L L  N+ +G+
Sbjct: 556 RINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGK 614

Query: 463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYK-TALG 521
           IP  + K+  LS L +++N L G +P+QL L K+L  IDL++N LSG IP  L K + LG
Sbjct: 615 IPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLG 674

Query: 522 E-----GNYDSAAPTS------------EGN-YGASSPAAGEAVSPSGSSTMRKEESVEF 563
           E       +  + PT             +GN    S P   + +   G+  +   +  +F
Sbjct: 675 ELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIP---QEIGNLGALNVLNLDKNQF 731

Query: 564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYL-NMIRALNLSHNNLMGTIPSTF 622
               +     G++ K ++ L LS N LTGEIP +IG L ++  AL+LS+NN  G IPST 
Sbjct: 732 --SGSLPQAMGKLSK-LYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTI 788

Query: 623 SHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYD 682
             LS++E+LDLS+N L G++P  + ++ +L   +V+ NNL GK+     QF+ +  +S+ 
Sbjct: 789 GTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFL 845

Query: 683 GNSLLCGQPLSE 694
           GN+ LCG PLS 
Sbjct: 846 GNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 326/667 (48%), Gaps = 50/667 (7%)

Query: 56  LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
           L ++ +L +RN  L G    + +C+   L  +   YNN+ G +P CL ++  L++   A 
Sbjct: 143 LKNIFYLDLRNNLLSGDVP-EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAG 201

Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQF--QIPISFEPFFN-----------HSKLKKFY 162
           N +TG+I  S +  L +L +L +S NQ   +IP  F    N              +    
Sbjct: 202 NHLTGSIPVS-IGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260

Query: 163 GQKNRLF-VEIESHSLTPKF--------QLQNISLSGCRCDFTFPRFLYYQHELRYVDLS 213
           G  + L  +E+  + LT K         QLQ + +   +   + P  L+   +L ++ LS
Sbjct: 261 GNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLS 320

Query: 214 HMNLRGEFPNWL--LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIP 271
             +L G     +  LE+   LE L L +N+ +G F   +  L+ LT + V  N I G +P
Sbjct: 321 ENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELP 377

Query: 272 TGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTN 331
             +G  L  L + +   N+L G IP S+     C  L++L LS+N + G I  R F   N
Sbjct: 378 ADLG-LLTNLRNLSAHDNLLTGPIPSSIS---NCTGLKLLDLSHNQMTGEI-PRGFGRMN 432

Query: 332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE 391
           L  + +  N FTG IP+++ NCS L  L ++DN+++G +   +G L  L  + +  N L 
Sbjct: 433 LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT 492

Query: 392 GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQ-VHLSRNKIEGQL-EDVFG-DI 448
           GPIP  +  L  L +L L  N  +G +P   S+  L Q + +  N +EG + E++F   +
Sbjct: 493 GPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKL 552

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
           L  LDLS N+FSG+IP    KL  L+YL L  N   G +P  L  L  L   D+S N L+
Sbjct: 553 LSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLT 612

Query: 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT 568
           GTIP  L  +      Y         N+ +++   G      G   M +E  +     + 
Sbjct: 613 GTIPGELLASLKNMQLYL--------NF-SNNLLTGTIPKELGKLEMVQEIDLSNNLFSG 663

Query: 569 SYYYQGRILKIMFGLDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQ 627
           S     +  K +F LD S N L+G IP ++   ++MI +LNLS N+  G IP +F +++ 
Sbjct: 664 SIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTH 723

Query: 628 IESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL 687
           + SLDLS N L G+IP  L  L  L    +A NNL G VP+  G F     +   GN+ L
Sbjct: 724 LVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPES-GVFKNINASDLMGNTDL 782

Query: 688 CG--QPL 692
           CG  +PL
Sbjct: 783 CGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  242 bits (617), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 226/753 (30%), Positives = 355/753 (47%), Gaps = 94/753 (12%)

Query: 24  DYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVH 83
           D   +L +  NL+ L L  + L+    ++   L +++ L++ +C L G    +    LV 
Sbjct: 135 DIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSR-FGRLVQ 193

Query: 84  LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
           LQ L +  N + G +P  + N TSL +   A N++ G++ +  L  L +L+ L + +N F
Sbjct: 194 LQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSF 252

Query: 144 --QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFL 201
             +IP       +   L     Q   L        LT    LQ + LS            
Sbjct: 253 SGEIPSQLGDLVSIQYLNLIGNQLQGLI----PKRLTELANLQTLDLSSNNLTGVIHEEF 308

Query: 202 YYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDV 261
           +  ++L ++ L+   L G  P  +  NN  L+ L L+   LSG     ++  + L  +D+
Sbjct: 309 WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDL 368

Query: 262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGH 321
           S N + G IP  +   +  L +  ++ N L G++  S+       +LQ   L +N+L+G 
Sbjct: 369 SNNTLTGQIPDSLFQLV-ELTNLYLNNNSLEGTLSSSIS---NLTNLQEFTLYHNNLEGK 424

Query: 322 IFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLV 381
           +      L  L  + L  N+F+G +P  + NC+ L  +    N +SG+IP  +G L +L 
Sbjct: 425 VPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLT 484

Query: 382 DIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--------------- 426
            + +  N L G IPA+L   + +TV+DL  N +SGS+PS F                   
Sbjct: 485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGN 544

Query: 427 ----------LTQVHLSRNKIEGQL---------------EDVF-GDI---------LVT 451
                     LT+++ S NK  G +               E+ F GDI         L  
Sbjct: 545 LPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDR 604

Query: 452 LDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTI 511
           L L  N+F+GRIP    K+S LS L ++ N+L G +PV+L L K+L  IDL++N LSG I
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 512 PSCLYKTA-LGE-----GNYDSAAPTS------------EGNYGASSPAAGEAVSPSGSS 553
           P+ L K   LGE       +  + PT             +GN    S        P    
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGS-------IPQEIG 717

Query: 554 TMRKEESVEFRTKNTSYYYQGRILKI--MFGLDLSCNKLTGEIPFQIGYL-NMIRALNLS 610
            ++   ++       S      I K+  +F L LS N LTGEIP +IG L ++  AL+LS
Sbjct: 718 NLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLS 777

Query: 611 HNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRV 670
           +NN  G IPST S L ++ESLDLS+N L G++P Q+ ++ +L   ++++NNL GK+    
Sbjct: 778 YNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK-- 835

Query: 671 GQFATFTENSYDGNSLLCGQPLSESCYPNGSPN 703
            QF+ +  +++ GN+ LCG PLS  C   GS N
Sbjct: 836 -QFSRWQADAFVGNAGLCGSPLSH-CNRAGSKN 866

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  220 bits (561), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 230/787 (29%), Positives = 355/787 (45%), Gaps = 77/787 (9%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLE-------------LLNFTNLEVLILDGSALHIRFLQ 51
           SL+ S   P  NLE+L L++ +L               L+  +L    + G    I  + 
Sbjct: 98  SLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGP---ISDIS 154

Query: 52  SIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGG--TLPWCL-VNMTSL 108
           S  V +++K L++   +L              LQ L + YNNI G    PW   +    L
Sbjct: 155 SFGVCSNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVEL 214

Query: 109 RILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL 168
               +  N++ G+I   P     +L  L +S N F     F  F + S L+      N+ 
Sbjct: 215 EFFSLKGNKLAGSI---PELDFKNLSYLDLSANNFST--VFPSFKDCSNLQHLDLSSNKF 269

Query: 169 FVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLEN 228
           + +I S SL+   +L  ++L+  +     P+       L+Y+ L   + +G +PN L + 
Sbjct: 270 YGDIGS-SLSSCGKLSFLNLTNNQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLADL 326

Query: 229 NKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR 288
            K +  L L+ N+ SG     +     L  +D+S N   G +P    + L  ++   +S 
Sbjct: 327 CKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSF 386

Query: 289 NVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFN--LTNLVTLQLDANQFTGGI 346
           N   G +P S         L+ L +S+N+L G I S      + NL  L L  N F G I
Sbjct: 387 NKFVGGLPDSFS---NLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPI 443

Query: 347 PENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTV 406
           P++L NCS L  L LS N+++G IP  LG+LS L D+I+  N L G IP  L  L  L  
Sbjct: 444 PDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALEN 503

Query: 407 LDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW 466
           L L+ N+++G +P+  S+   T+++                    + LS N+ SG IP  
Sbjct: 504 LILDFNDLTGPIPASLSN--CTKLNW-------------------ISLSNNQLSGEIPAS 542

Query: 467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYD 526
           + +LS+L+ L L NN++ G +P +L   + L  +DL+ N L+G+IP  L+K +   GN  
Sbjct: 543 LGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS---GNIA 599

Query: 527 SAAPTSE-----GNYGASS-PAAGEAVSPSGSSTMRKEESVEFRTK---NTSYYYQGRIL 577
            A  T +      N G+     AG  +   G   +R+E+     T+   N +  Y+G   
Sbjct: 600 VALLTGKRYVYIKNDGSKECHGAGNLLEFGG---IRQEQLDRISTRHPCNFTRVYRGITQ 656

Query: 578 KI------MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL 631
                   M  LDLS NKL G IP ++G +  +  LNL HN+L G IP     L  +  L
Sbjct: 657 PTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAIL 716

Query: 632 DLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691
           DLSYN   G IP  L  L  L    +++NNLSG +P+    F TF +  +  NS LCG P
Sbjct: 717 DLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESA-PFDTFPDYRFANNS-LCGYP 774

Query: 692 LSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWF 751
           L   C      + +   +         GS  +  + S +  I G+  V       RR+  
Sbjct: 775 LPIPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLFS-LFCIFGLIIVAIETKKRRRKKE 833

Query: 752 YLIETYI 758
             +E Y+
Sbjct: 834 AALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  219 bits (558), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 225/749 (30%), Positives = 338/749 (45%), Gaps = 68/749 (9%)

Query: 59  VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQI 118
           V  L +RN  L GT +   L  L +L+ L++  NN   +      +  SL +LD++SN +
Sbjct: 78  VIGLDLRNGGLTGTLNLNNLTALSNLRSLYLQGNNFS-SGDSSSSSGCSLEVLDLSSNSL 136

Query: 119 TGNISSSPLRYLTS----LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIES 174
           T    SS + Y+ S    L  +  S+N+    +   P  ++ ++       NR   EI  
Sbjct: 137 T---DSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIP- 192

Query: 175 HSLTPKF--QLQNISLSGCRCDFTFPRFLYYQHE-LRYVDLSHMNLRGEFPNWLLENNKE 231
            +    F   L+++ LSG      F R  +   E L    LS  ++ G+     L N K 
Sbjct: 193 ETFIADFPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKL 252

Query: 232 LETLLLANNSLSGFFQMPVNP----LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNIS 287
           LETL L+ NSL G  ++P +      + L  + ++ N   G IP  +      LE  ++S
Sbjct: 253 LETLNLSRNSLIG--KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLS 310

Query: 288 RNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-------------------- 327
            N L G +P S      C SLQ L L NN L G   S                       
Sbjct: 311 GNSLTGQLPQSF---TSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSV 367

Query: 328 -----NLTNLVTLQLDANQFTGGIPE---NLLNCSLLGGLYLSDNHISGKIPKWLGNLSN 379
                N +NL  L L +N+FTG +P    +L + S+L  L +++N++SG +P  LG   +
Sbjct: 368 PISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKS 427

Query: 380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS--CFSSWLLTQVHLSRNKI 437
           L  I +  N L G IP  +  L  L+ L +  NN++G +P   C     L  + L+ N +
Sbjct: 428 LKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLL 487

Query: 438 EGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLK 495
            G L +       ++ + LS N  +G IP  I KL  L+ L L NN+L G +P +L   K
Sbjct: 488 TGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCK 547

Query: 496 QLQLIDLSHNNLSGTIPSCLYKTA--LGEGNYDS---AAPTSEGNYGASSPAAGEAVSPS 550
            L  +DL+ NNL+G +P  L   A  +  G+      A   +EG  G     AG  V   
Sbjct: 548 NLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEG--GTDCRGAGGLVEFE 605

Query: 551 GSSTMRKEESVEFRTKNTSYYYQGRILKI------MFGLDLSCNKLTGEIPFQIGYLNMI 604
           G    R E      +   +  Y G  + +      M  LDLS N ++G IP   G +  +
Sbjct: 606 GIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYL 665

Query: 605 RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664
           + LNL HN L GTIP +F  L  I  LDLS+N LQG +P  L  L  L+   V++NNL+G
Sbjct: 666 QVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTG 725

Query: 665 KVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYIT 724
            +P   GQ  TF    Y  NS LCG PL   C     P  S ++ +       M +  + 
Sbjct: 726 PIP-FGGQLTTFPLTRYANNSGLCGVPL-PPCSSGSRPTRSHAHPKKQSIATGMSAGIVF 783

Query: 725 FIISYVIVILGIFGVLYVNPYWRRRWFYL 753
             +  V++I+ ++    V    ++R  Y+
Sbjct: 784 SFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 233/789 (29%), Positives = 357/789 (45%), Gaps = 81/789 (10%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLE-------------LLNFTNLEVLILDGSALHIRFLQ 51
           SL+ S   P  NLE+L L++ +L               L+  +L    + G    I  + 
Sbjct: 98  SLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGP---ISDIS 154

Query: 52  SIAVLTSVKHLSMRNCYLY--GTSDFQGLCELVHLQELHIGYNNIGG--TLPWCL-VNMT 106
           S  V +++K L++   +L   G    +G      LQ L + YNNI G    PW   +   
Sbjct: 155 SFGVCSNLKSLNLSKNFLDPPGKEMLKGAT--FSLQVLDLSYNNISGFNLFPWVSSMGFV 212

Query: 107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN 166
            L    I  N++ G+I   P     +L  L +S N F     F  F + S L+      N
Sbjct: 213 ELEFFSIKGNKLAGSI---PELDFKNLSYLDLSANNFST--VFPSFKDCSNLQHLDLSSN 267

Query: 167 RLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
           + + +I S SL+   +L  ++L+  +     P+       L+Y+ L   + +G +PN L 
Sbjct: 268 KFYGDIGS-SLSSCGKLSFLNLTNNQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLA 324

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI 286
           +  K +  L L+ N+ SG     +     L  +D+S N   G +P      L  ++   +
Sbjct: 325 DLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVL 384

Query: 287 SRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFN--LTNLVTLQLDANQFTG 344
           S N   G +P S         L+ L +S+N+L G I S      + NL  L L  N F G
Sbjct: 385 SFNKFVGGLPDSFS---NLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKG 441

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFL 404
            IP++L NCS L  L LS N+++G IP  LG+LS L D+I+  N L G IP  L  L  L
Sbjct: 442 PIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQAL 501

Query: 405 TVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP 464
             L L+ N+++G +P+  S+   T+++                    + LS N+ SG IP
Sbjct: 502 ENLILDFNDLTGPIPASLSN--CTKLNW-------------------ISLSNNQLSGEIP 540

Query: 465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGN 524
             + +LS+L+ L L NN++ G +P +L   + L  +DL+ N L+G+IP  L+K +   GN
Sbjct: 541 ASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS---GN 597

Query: 525 YDSAAPTSE-----GNYGASS-PAAGEAVSPSGSSTMRKEESVEFRTK---NTSYYYQGR 575
              A  T +      N G+     AG  +   G   +R+E+     T+   N +  Y+G 
Sbjct: 598 IAVALLTGKRYVYIKNDGSKECHGAGNLLEFGG---IRQEQLDRISTRHPCNFTRVYRGI 654

Query: 576 ILKI------MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE 629
                     M  LDLS NKL G IP ++G +  +  LNL HN+L G IP     L  + 
Sbjct: 655 TQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVA 714

Query: 630 SLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCG 689
            LDLSYN   G IP  L  L  L    +++NNLSG +P+    F TF +  +  NS LCG
Sbjct: 715 ILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESA-PFDTFPDYRFANNS-LCG 772

Query: 690 QPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRR 749
            PL   C      + +   +         GS  +  + S +  I G+  V       RR+
Sbjct: 773 YPLPLPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLFS-LFCIFGLIIVAIETKKRRRK 831

Query: 750 WFYLIETYI 758
               +E Y+
Sbjct: 832 KEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  216 bits (550), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 315/627 (50%), Gaps = 43/627 (6%)

Query: 84  LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
           LQ+L I   N+ GTLP  L +   L++LD++SN + G+I  S L  L +LE L +++NQ 
Sbjct: 107 LQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRNLETLILNSNQL 165

Query: 144 --QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR-CDFTFPRF 200
             +IP         SKLK      N L   I +  L     L+ I + G +      P  
Sbjct: 166 TGKIPPDIS---KCSKLKSLILFDNLLTGSIPTE-LGKLSGLEVIRIGGNKEISGQIPSE 221

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
           +     L  + L+  ++ G  P+ L    K+LETL +    +SG     +    +L  + 
Sbjct: 222 IGDCSNLTVLGLAETSVSGNLPSSL-GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLF 280

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           + +N + G IP  IG  L +LE   + +N L G IP  +     C +L+++ LS N L G
Sbjct: 281 LYENSLSGSIPREIGQ-LTKLEQLFLWQNSLVGGIPEEIG---NCSNLKMIDLSLNLLSG 336

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNL 380
            I S    L+ L    +  N+F+G IP  + NCS L  L L  N ISG IP  LG L+ L
Sbjct: 337 SIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKL 396

Query: 381 VDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFSSWLLTQVHLSRNKIEG 439
                 +N LEG IP  L     L  LDL  N+++G++PS  F    LT++ L  N + G
Sbjct: 397 TLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSG 456

Query: 440 QLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497
            +    G+   LV L L +NR +G IP+ I  L  +++L  ++N L G+VP ++    +L
Sbjct: 457 FIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSEL 516

Query: 498 QLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRK 557
           Q+IDLS+N+L G++P+ +   + G    D +A    G   AS    G  VS      + K
Sbjct: 517 QMIDLSNNSLEGSLPNPVSSLS-GLQVLDVSANQFSGKIPAS---LGRLVS------LNK 566

Query: 558 EESVEFRTKNTSYYYQGRI---LKIMFGL---DLSCNKLTGEIPFQIGYL-NMIRALNLS 610
                  +KN    + G I   L +  GL   DL  N+L+GEIP ++G + N+  ALNLS
Sbjct: 567 L----ILSKN---LFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLS 619

Query: 611 HNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRV 670
            N L G IPS  + L+++  LDLS+NML+G +   L  +  L   ++++N+ SG +PD  
Sbjct: 620 SNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPDN- 677

Query: 671 GQFATFTENSYDGNSLLCGQPLSESCY 697
             F   +    +GN  LC     +SC+
Sbjct: 678 KLFRQLSPQDLEGNKKLCSS-TQDSCF 703

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  209 bits (532), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 219/765 (28%), Positives = 341/765 (44%), Gaps = 106/765 (13%)

Query: 62  LSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITG- 120
           L +RN  L GT +   L  L +LQ L++   N   +      +   L++LD++SN I+  
Sbjct: 82  LDLRNSGLTGTLNLVNLTALPNLQNLYL-QGNYFSSGGDSSGSDCYLQVLDLSSNSISDY 140

Query: 121 NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
           ++        ++L  + +SNN+    + F P    S L+          V++  + L+ K
Sbjct: 141 SMVDYVFSKCSNLVSVNISNNKLVGKLGFAP----SSLQSL------TTVDLSYNILSDK 190

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
                IS         FP        L+Y+DL+H NL G+F +        L    L+ N
Sbjct: 191 IPESFIS--------DFP------ASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQN 236

Query: 241 SLSG-FFQMPVNPLKQLTTIDVSKNFIQGHIPTG--IGAFLPRLEHFNISRNVLNGSIPC 297
           +LSG  F + +   K L T+++S+N + G IP G   G+F   L+  +++ N L+G IP 
Sbjct: 237 NLSGDKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSF-QNLKQLSLAHNRLSGEIPP 295

Query: 298 SLHMTMGCFSLQILALSNNSLQGHI-------------------FSRSF----------- 327
            L +   C +L IL LS N+  G +                    S  F           
Sbjct: 296 ELSLL--CKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGI 353

Query: 328 -------------------NLTNLVTLQLDANQFTGGIPENLLNCSL-----LGGLYLSD 363
                              N +NL  L L +N FTG +P     CSL     L  + +++
Sbjct: 354 TYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGF--CSLQSSPVLEKILIAN 411

Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS--C 421
           N++SG +P  LG   +L  I +  N L GPIP  +  L  L+ L +  NN++G++P   C
Sbjct: 412 NYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVC 471

Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILA 479
                L  + L+ N + G + +       ++ + LS NR +G+IP+ I  LS L+ L L 
Sbjct: 472 VKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLG 531

Query: 480 NNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTA--LGEGNYDS---AAPTSEG 534
           NN+L G VP QL   K L  +DL+ NNL+G +P  L   A  +  G+      A   +EG
Sbjct: 532 NNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEG 591

Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKI------MFGLDLSCN 588
             G     AG  V   G    R E      +   +  Y G  +        M   D+S N
Sbjct: 592 --GTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYN 649

Query: 589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVE 648
            ++G IP   G +  ++ LNL HN + GTIP +F  L  I  LDLS+N LQG +P  L  
Sbjct: 650 AVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGS 709

Query: 649 LYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSN 708
           L  L+   V++NNL+G +P   GQ  TF  + Y  NS LCG PL         P  S  +
Sbjct: 710 LSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIH 768

Query: 709 EEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYL 753
            +       + +      + +V++++ ++ V  V    ++R  Y+
Sbjct: 769 AKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  206 bits (524), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 217/717 (30%), Positives = 329/717 (45%), Gaps = 62/717 (8%)

Query: 47  IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGT--LPWCLVN 104
           +  L S+   + +K L++ +  L       G  +L  L+ L +  N+I G   + W L +
Sbjct: 138 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 197

Query: 105 -MTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
               L+ L I+ N+I+G++  S      +LE L VS+N F   I F    + S L+    
Sbjct: 198 GCGELKHLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDI 252

Query: 164 QKNRLFVEI-ESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFP 222
             N+L  +   + S   + +L NIS +     F  P        L+Y+ L+     GE P
Sbjct: 253 SGNKLSGDFSRAISTCTELKLLNISSN----QFVGPIPPLPLKSLQYLSLAENKFTGEIP 308

Query: 223 NWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE 282
           ++L      L  L L+ N   G           L ++ +S N   G +P      +  L+
Sbjct: 309 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 368

Query: 283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR-SFNLTN-LVTLQLDAN 340
             ++S N  +G +P SL  T    SL  L LS+N+  G I      N  N L  L L  N
Sbjct: 369 VLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 426

Query: 341 QFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK 400
            FTG IP  L NCS L  L+LS N++SG IP  LG+LS L D+ +  N LEG IP  L  
Sbjct: 427 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 486

Query: 401 LNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFS 460
           +  L  L L+ N+++G +PS  S+   T ++                    + LS NR +
Sbjct: 487 VKTLETLILDFNDLTGEIPSGLSN--CTNLNW-------------------ISLSNNRLT 525

Query: 461 GRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTAL 520
           G IP WI +L +L+ L L+NN+  G +P +L   + L  +DL+ N  +GTIP+ ++K + 
Sbjct: 526 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 585

Query: 521 G-EGNYDSAAP---TSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN----TSYYY 572
               N+ +                  AG  +   G   +R E+     T+N    TS  Y
Sbjct: 586 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVY 642

Query: 573 QGRILKI------MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLS 626
            G           M  LD+S N L+G IP +IG +  +  LNL HN++ G+IP     L 
Sbjct: 643 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 702

Query: 627 QIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSL 686
            +  LDLS N L G+IP  +  L  L    +++NNLSG +P+ +GQF TF    +  N  
Sbjct: 703 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPG 761

Query: 687 LCGQPLSESCYPNGSPNVSVSNEEDDDNFIDM-GSFYITFIISYVIVILGIFGVLYV 742
           LCG PL   C P+ +   +            + GS  +  + S+V     IFG++ V
Sbjct: 762 LCGYPLPR-CDPSNADGYAHHQRSHGRRPASLAGSVAMGLLFSFVC----IFGLILV 813

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  206 bits (524), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 210/724 (29%), Positives = 315/724 (43%), Gaps = 104/724 (14%)

Query: 52  SIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRIL 111
           S+  L  ++HL + NC LYG      L  L HL  +++ +N   G +P  + N+  LR L
Sbjct: 105 SLFKLQYLRHLDLTNCNLYGEIP-SSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHL 163

Query: 112 DIASNQITGNISSSPLRYLTSLEELRVSNNQF--QIPISFEPFFNHSKLKKFYGQKNRLF 169
            +A+N +TG I SS L  L+ L  L + +N+   +IP S        +L+      N L 
Sbjct: 164 ILANNVLTGEIPSS-LGNLSRLVNLELFSNRLVGKIPDSIGDL---KQLRNLSLASNNLI 219

Query: 170 VEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENN 229
            EI S SL     L ++ L+  +     P  +    ELR +   + +L G  P     N 
Sbjct: 220 GEIPS-SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIP-ISFANL 277

Query: 230 KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
            +L   +L++N+ +  F   ++    L   DVS N   G  P  +   +P LE   +  N
Sbjct: 278 TKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSL-LLIPSLESIYLQEN 336

Query: 290 VLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEN 349
              G  P     T     LQ L L  N L G I      L NL  L +  N FTG IP  
Sbjct: 337 QFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT 394

Query: 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLV--------------------DIIMPNNH 389
           +     L  L LS N++ G++P  L  L+ +V                    ++ + +N 
Sbjct: 395 ISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNS 454

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS--SWLLTQVHLSRNKIEGQLEDVFGD 447
            +GPIP  +CKL+ L  LDL  N  SGS+PSC    S  + +++L  N   G L D+F  
Sbjct: 455 FQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSK 514

Query: 448 I--LVTLDLSYNRFSGRIP------------------------NWIDKLSHLSYLILANN 481
              LV+LD+S+N+  G+ P                        +W++ L  L  L L +N
Sbjct: 515 ATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSN 574

Query: 482 NLEGEVPVQLCLL--KQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGAS 539
              G +  +   +  + L++ID+SHNN SGT+P   +       N+      +E      
Sbjct: 575 KFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYF------SNWKDMTTLTEE----- 623

Query: 540 SPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ------------GRILKIMFGLDLSC 587
                             +   EF     SYY++             RI +    +D S 
Sbjct: 624 ----------------MDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSG 667

Query: 588 NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLV 647
           NK+ G IP  +GYL  +R LNLS N     IP   ++L+++E+LD+S N L G+IP  L 
Sbjct: 668 NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 648 ELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVS 707
            L  L+  + +HN L G VP R  QF     +S+  N  L G  L + C   G+ N +  
Sbjct: 728 ALSFLSYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQ 784

Query: 708 NEED 711
             ED
Sbjct: 785 LPED 788

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
255581263	912	serine-threonine protein kinase, plant-t	0.912	0.779	0.507	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.924	0.921	0.461	1e-171
224134891	953	predicted protein [Populus trichocarpa]	0.947	0.774	0.444	1e-164
224073436	1014	predicted protein [Populus trichocarpa]	0.947	0.727	0.446	1e-161
224123984	1016	predicted protein [Populus trichocarpa]	0.938	0.719	0.444	1e-160
224073422	969	predicted protein [Populus trichocarpa]	0.951	0.764	0.433	1e-156
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.961	0.511	0.441	1e-156
224073382	1309	predicted protein [Populus trichocarpa]	0.948	0.564	0.439	1e-156
224098008	1097	predicted protein [Populus trichocarpa]	0.924	0.656	0.433	1e-153
356523235	936	PREDICTED: LOW QUALITY PROTEIN: protein	0.956	0.795	0.423	1e-149

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/760 (50%), Positives = 489/760 (64%), Gaps = 49/760 (6%)

Query: 28  ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGT-SDFQGLCELVHLQE 86
           +L NF NLE L LD   L   FLQ++ V+TS+K LS+  C L G   + QGLCEL+HL+ 
Sbjct: 172 DLPNFENLEELYLDKIELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRV 231

Query: 87  LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
           L +  N   G LPWCL N+TSL++LD++SNQ  G+IS+SPL+ L SL +L VSNN FQ+P
Sbjct: 232 LDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVP 291

Query: 147 ISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHE 206
            S  PFFNHS LK   GQ N +++E E HS  P+FQL +I  SG     TFP FLY+Q+ 
Sbjct: 292 FSLGPFFNHSNLKHIRGQNNAIYLEAELHS-APRFQLISIIFSGYGICGTFPNFLYHQNN 350

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFI 266
           L++VDLSH++L+GEFPNWLL NN  LE L L NNSLSG  Q+P++P   L  +D+S N +
Sbjct: 351 LQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHV 410

Query: 267 QGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL----------------------HMTMG 304
             HIP  IG FLP+LE  N+S N  +GSIP S                       H+  G
Sbjct: 411 HDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATG 470

Query: 305 CFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDN 364
           CFSL  L LSNNSLQG +FS+ FNLTNL  L+LD N F+G IP++L + S L  + LSDN
Sbjct: 471 CFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSL-SKSALSIMDLSDN 529

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS 424
           H+SG IP W+GNLS L ++I+ NN L+GPIP   C+L++L VLDL  N++SG LPSC S 
Sbjct: 530 HLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSP 589

Query: 425 WLLTQVHLSRNKIEGQLEDVFGD--ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
             +  VHLS+N IEG   + F     LVTLDLS NR +GRIP  I  ++ L  L L +N 
Sbjct: 590 SSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNR 649

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPA 542
            +GE+P Q+C L QL LI L+ NNLSG+IPSCL          DS AP         +  
Sbjct: 650 FDGEIPAQICGLYQLSLIVLADNNLSGSIPSCLQLD-----QSDSLAPDVPPVPNPLN-P 703

Query: 543 AGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN 602
               V P           + F TK  SY YQG+IL  + G+D SCNKLTGEIP ++G  +
Sbjct: 704 YYLPVRP-----------MYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHS 752

Query: 603 MIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662
            I +LNLS+N   G IPSTFS+L QIESLDLSYN L G IP+QL+EL  L+ FSVAHNNL
Sbjct: 753 AIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNL 812

Query: 663 SGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCY---PNGSPNVSVSNEEDDDNFIDMG 719
            GK P R GQFATF  +SY+GN  LCG PL +SC     + +P  S  +EE   NF+DM 
Sbjct: 813 FGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDEE--SNFLDMN 870

Query: 720 SFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIA 759
           +FY +FI+SY  VI+G+F VLY+NP WRR WF  ++  I+
Sbjct: 871 TFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICIS 910

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 358/775 (46%), Positives = 484/775 (62%), Gaps = 55/775 (7%)

Query: 30  LNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHI 89
           L    LE+L L  + ++   L  +  L+S+KHL++ N  L G+ D +GLCEL  LQEL I
Sbjct: 25  LRLNKLEILELSFNKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDI 84

Query: 90  GYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISF 149
            YN++ G LP CL N+ +L++LDI+ N  +GNIS S +  LTS+ +L++S+N FQIPIS 
Sbjct: 85  SYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISL 143

Query: 150 EPFFNHSKLKKFYGQKNRLFVEIE-SHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELR 208
            PFFN S LK   G  N ++   E  H+L P+FQLQ +SL+      TFP+FLYYQH+L+
Sbjct: 144 GPFFNLSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQ 203

Query: 209 YVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQG 268
           +VDLSH+ + GEFP+WLL+NN +LE L L N+SLSG  Q+P +    L+ +D+S+N IQ 
Sbjct: 204 FVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQN 263

Query: 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSL----------------------HMTMGCF 306
            IPT IGA+ P LE  N+SRN  +GSIP S+                       +  GC 
Sbjct: 264 QIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCL 323

Query: 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI 366
           SL+ L LSNN L+G  F RSFNL  L  L L  NQ TG +P +L N S L  L +S N++
Sbjct: 324 SLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNL 383

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCF-SSW 425
           SGKIP+W+G +S+L                          LDL  NN+ GSLPS F SS 
Sbjct: 384 SGKIPRWIGYMSSL------------------------QYLDLSENNLYGSLPSSFCSSR 419

Query: 426 LLTQVHLSRNKIEGQLEDVFGDILV--TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
            +T+V+LS+NK+EG L       L    LDLS+N F G IP  I  L  LS+L+L  NNL
Sbjct: 420 TMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNL 479

Query: 484 EGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAA 543
           EG++P QLC L++L LIDLSHN+L G I  CL  T+  +   +++   S  + G  +   
Sbjct: 480 EGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGP 539

Query: 544 GEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNM 603
                          +SVEF TK+ SY ++G ILK + G+DLSCN LTGEIP ++G L+ 
Sbjct: 540 QIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSN 599

Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS 663
           I+ LNLSHN+L G IP TFS+L +IESLDLSYN L G+IP QL++L  L+ FSVAHNNLS
Sbjct: 600 IQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLS 659

Query: 664 GKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPN---VSVSNEEDDDNFIDMGS 720
           GK P+ V QF+TF ++ Y+GN LLCG PL+ +C     P+    S +++++++  IDM +
Sbjct: 660 GKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEA 719

Query: 721 FYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLVDHL-IPPRF 774
           F +TF ++Y++V+L I  VLY+NP WRR WFY I   I  CYY LVD+L +P RF
Sbjct: 720 FIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 344/774 (44%), Positives = 452/774 (58%), Gaps = 36/774 (4%)

Query: 29  LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
             N + LE L LD ++L I FLQ+I  L ++K LS+  C L+GT   QG CEL +L++L 
Sbjct: 169 FFNSSTLEELYLDNTSLRINFLQNIGALPALKVLSVAECDLHGTLPAQGWCELKNLKQLD 228

Query: 89  IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
           +  NN GG+LP CL N++SL++LD++ NQ TGN +S PL  L SLE L +SNN F++PIS
Sbjct: 229 LARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPIS 288

Query: 149 FEPFFNHSKLKKFYGQKNRLFVE-IESHSLTPKFQLQNISLSGCRCDFTF---PRFLYYQ 204
            +PF NHS LK F  + NRL  E +   +L PKFQL    LS           P FLYYQ
Sbjct: 289 MKPFLNHSSLKFFSSENNRLVTEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQ 348

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264
            +LR +DLSH N+ G FP+WLL+NN  LE L L+ N   G  Q+  +P   +  +D+S N
Sbjct: 349 LDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNN 408

Query: 265 FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-----------------HMTMGCFS 307
            + G I   I    P L    +++N   G IP  L                  + +   +
Sbjct: 409 NMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT 468

Query: 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPE-NLLNCSLLGGLYLSDNHI 366
           + +L LSNNSL G I +  FN +    L L+ N F+G I +  L     L  L LS+N  
Sbjct: 469 IPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQF 528

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL 426
           SG +P+   N ++L  + +  NH +GPIP + CKL  L  LDL  NN+SG +PSCFS   
Sbjct: 529 SGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPP 588

Query: 427 LTQVHLSRNKIEGQLEDVF--GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE 484
           LT VHLS+N++ G L   F     LVT+DL  N  +G IPNWI   S LS L+L  N+ +
Sbjct: 589 LTHVHLSKNRLSGPLTYGFFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFD 648

Query: 485 GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL----YKTALGEGNYDSAAP-----TSEGN 535
           GE+PVQLCLL+QL ++D+S N LSG +PSCL    +K +  +   D  A        +  
Sbjct: 649 GELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAY 708

Query: 536 YGASSPAAGEAVSPSGSSTMRK--EESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE 593
           Y    P   ++V   G        EE +EFRTKN  Y Y+G IL  M G+DLS N   G 
Sbjct: 709 YKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGA 768

Query: 594 IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALA 653
           IP + G L+ IR+LNLSHNN   +IP+TFS+L QIESLDLSYN L G IP QL E+  L 
Sbjct: 769 IPQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLE 828

Query: 654 IFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDD 713
           +FSVAHNNLSG  P+R  QF TF E+ Y+GN  LCG PL  +C      +  V ++E  D
Sbjct: 829 VFSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGD 888

Query: 714 -NFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLV 766
             FIDM  FYI+F + Y +V++ I  VLY+NPYWRRRW Y IE  I  CYY +V
Sbjct: 889 VGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/784 (44%), Positives = 460/784 (58%), Gaps = 46/784 (5%)

Query: 29   LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
              N + LE L LD ++L I FLQ+I  L  +K LS+  C L+GT   QG CEL +L++L 
Sbjct: 220  FFNSSTLEELYLDRTSLPINFLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLD 279

Query: 89   IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
            +  NN+GG+LP CL N++SL++LD++ NQ TGNI+S PL  LTSLE L +SNN F++PIS
Sbjct: 280  LSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPIS 339

Query: 149  FEPFFNHSKLKKFYGQKNRLFVEIES-HSLTPKFQLQNISLSGC--RCDFTFPRFLYYQH 205
             +PF NHS LK F  + N+L  E  +  +L PKFQL    LS      +   P FLYYQ+
Sbjct: 340  MKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQY 399

Query: 206  ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
            ++R +DLSH N+   FP+WLL+NN  LE L L+NNS  G  Q+  +P   +T +D+S N 
Sbjct: 400  DIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNN 459

Query: 266  IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL------------HMTMGCFSLQ---- 309
            + G IP  I    P +    ++ N   G IP  L            +  +    L+    
Sbjct: 460  MNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTT 519

Query: 310  --ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHI 366
               L LSNN+L G + +  FN + L  L L  N F G I + LL    +   L LSDN  
Sbjct: 520  IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQF 579

Query: 367  SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL 426
            SG +P+WL N + L+ I +  N+ +GPI  + CKLN L  LDL  NN+SG +PSCFS   
Sbjct: 580  SGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQ 639

Query: 427  LTQVHLSRNKIEGQLEDVF--GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE 484
            +T VHLS N++ G L   F     LVT+DL  N F+G  PNWI  LS LS L+L  N+ +
Sbjct: 640  ITHVHLSENRLSGPLTYGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFD 699

Query: 485  GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGAS-SPAA 543
            GE+PVQLCLL+QL ++D+S N LSG +PSCL      E +  + A         S   A 
Sbjct: 700  GELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAY 759

Query: 544  GEAVSPSGSSTM---RK-------EESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE 593
             E + P    +M   RK       EE +EF TKN  Y Y+G+ L  M G+DLS N   G 
Sbjct: 760  YETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGA 819

Query: 594  IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALA 653
            IP + G L+ I +LNLSHNNL G+IP+TFS+L QIESLDLSYN L G IP QL ++  L 
Sbjct: 820  IPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLE 879

Query: 654  IFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVS------ 707
            +FSVAHNNLSG  P+R  QF TF E+ Y+GN  LCG PL  +C     P+  V       
Sbjct: 880  VFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPS 939

Query: 708  -----NEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCY 762
                 +E+ DD FIDM  FYI F + Y +V++ I  VLY++PYWRRRW Y IE  I  CY
Sbjct: 940  QPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCY 999

Query: 763  YLLV 766
            Y +V
Sbjct: 1000 YFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 345/777 (44%), Positives = 458/777 (58%), Gaps = 46/777 (5%)

Query: 29   LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
              N T LE L LDGS+L + FL +I VL ++K LS   C L GT   QGLC L +L++L 
Sbjct: 236  FFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLF 295

Query: 89   IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
            +  NN+ G+LP C  N++SL++LD++ NQ  GNI+SSPL  L SLE + +SNN FQ+PIS
Sbjct: 296  LSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPIS 355

Query: 149  FEPFFNHSKLKKFYGQKNRLFVEIES-HSLTPKFQLQNISLSGCRCD---FTFPRFLYYQ 204
             +PF NHS L+ F    NRL  E  S H L PKFQL   SLS    +      P FLY Q
Sbjct: 356  MKPFMNHSSLRFFSSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQ 415

Query: 205  HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264
            H+LR +DLS  +  G FP+WLL+NN  LE L L  NS  G  Q+  +P   +T ID+S N
Sbjct: 416  HDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNN 475

Query: 265  FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS 324
             + G IP  I      L    +++N L G IP  L  +    SL +L LSNN L      
Sbjct: 476  NMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSS---SLGVLDLSNNQLSMVELE 532

Query: 325  RSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDN-------------------- 364
            +   LT    L+L  N   G +P +++N S L  LYLSDN                    
Sbjct: 533  QFITLT---FLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVL 589

Query: 365  -----HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419
                   SG +P+W  NL+ +  I +  NH  GPIP   CKL+ L  LDL  NN+  S+P
Sbjct: 590  DLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIP 649

Query: 420  SCFSSWLLTQVHLSRNKIEGQLEDVF--GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLI 477
            SCF+   +T VHLS+N++ G L   F     LVTLDL  N F+G I NWI  LS LS L+
Sbjct: 650  SCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLL 709

Query: 478  LANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYG 537
            L  NN +GE  VQLCLL+QL ++D+S N LSG +PSCL   +  E +Y+ A+     ++G
Sbjct: 710  LRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKE-SYEKASVDFGFHFG 768

Query: 538  ASSPAAG-------EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590
            ++             A+  S    +  EE +EF  K+  Y Y+G+IL  M G+DLS NK 
Sbjct: 769  STPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKF 828

Query: 591  TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY 650
            +G IP ++G L+ + ALNLSHNNL G+IP+TFS+L QIES DLSYN L G IP +L E+ 
Sbjct: 829  SGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEIT 888

Query: 651  ALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNE- 709
             L +FSVAHNNLSG+ P+R  QF TF E+SY+GN  LCG PL  +C    SP++ + N+ 
Sbjct: 889  TLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDK 948

Query: 710  EDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLLV 766
            ++DD FIDM  FYI+  + Y++V++GI  VLY+NPYWR  WF  I+  I  C+  L+
Sbjct: 949  QEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 349/806 (43%), Positives = 460/806 (57%), Gaps = 65/806 (8%)

Query: 6   LLQSLWTPFPNLETLELRDYHLE---LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHL 62
            LQSL +    L+TL L+D +L      N + LE L LD ++L I FLQ+   L ++K L
Sbjct: 173 FLQSLRS----LKTLSLKDTNLSQGTFFNSSTLEELHLDNTSLPINFLQNTRALPALKVL 228

Query: 63  SMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
           S+  C L+GT   QG CEL +L++L +  NN GG LP CL N++SL +LD++ NQ TGNI
Sbjct: 229 SVGECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNI 288

Query: 123 SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIES-HSLTPKF 181
            S PL  L SLE L +SNN F++P S +PF NHS LK F  + NRL  E  +  +L PKF
Sbjct: 289 VSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKF 348

Query: 182 QLQNISL--SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
           QL  +SL  +    +   P FLYYQ++LR +DLSH N+ G FP+WLL+NN  +E L L++
Sbjct: 349 QLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSD 408

Query: 240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
           NS  G  Q+P +P   +T +D+S N +   IP  I   LP LE   + +N   G IP  L
Sbjct: 409 NSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCL 468

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359
                  SL +L LSNN L          LT L+ L+L  N   G IP ++ N S L  L
Sbjct: 469 G---NISSLSVLDLSNNQLSTVKLEL---LTTLMFLKLSNNNLGGQIPISVFNSSTLEFL 522

Query: 360 YL-------------------------SDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI 394
           YL                         S+N  SG +P+W  N + L  I +  NH +GPI
Sbjct: 523 YLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPI 582

Query: 395 PANL-CKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVF--GDILVT 451
           P +  CK + L  LDL  NN+SG +PSCFS   +T +HLS+N++ G L   F     LVT
Sbjct: 583 PRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYGFYNSSSLVT 642

Query: 452 LDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTI 511
           +DL  N F+  IPNWI  LS LS L+L  N+ +          +QL ++D+S N LSG +
Sbjct: 643 MDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPL 692

Query: 512 PSCLYKTALGEGN---------YDSAAPTSEGNYGASSPAAGEAVS-PSGSSTMRKEESV 561
           PSCL      E +         +D +    +  Y    P   ++V    G      EE +
Sbjct: 693 PSCLGNLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVI 752

Query: 562 EFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPST 621
           EF TK  SY Y+G++L  M G+DLS N   G IP + G L+ I +LNLSHNNL G+IP+T
Sbjct: 753 EFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPAT 812

Query: 622 FSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY 681
           FS+L QIESLDLSYN L G IP QL E+  L +FSVAHNNLSGK P+R  QF TF E+ Y
Sbjct: 813 FSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCY 872

Query: 682 DGNSLLCGQPLSESCYPNGSPNVSVSNEED-DDNFIDMGSFYITFIISYVIVILGIFGVL 740
           +GN  LCG PL  +C      +  V N+E  DD F+DM  FYI+F + Y +V++ I  VL
Sbjct: 873 EGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVL 932

Query: 741 YVNPYWRRRWFYLIETYIAFCYYLLV 766
           Y+NPYWRRRW + IE  I  CYY  V
Sbjct: 933 YINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 350/793 (44%), Positives = 461/793 (58%), Gaps = 44/793 (5%)

Query: 5    SLLQSLWTPFPNLE-TLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLS 63
            SLL+ L+     LE ++ LR    EL N  NLEVL L  + +    LQ + V+TS+K LS
Sbjct: 667  SLLKELYLGGNKLEGSVTLR----ELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALS 722

Query: 64   MRNCYLYGT-SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
            +R+  + G+ +  QGLC+L +LQEL +  N   G++  CL N+TSLR LD++ N+ +GN+
Sbjct: 723  LRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNL 782

Query: 123  SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLK--KFYGQKNRLFVEIESHSLTPK 180
             SS    L  LE L +S+N FQ       F  HSKL+        N L +E E  +  P 
Sbjct: 783  DSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPS 842

Query: 181  FQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
            FQL+   LS C     + P FL+YQH+LR VDLS+ +L  +FP WL++NN  LE L L N
Sbjct: 843  FQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKN 902

Query: 240  NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
            NSL+G+F +P  P    + ID+S N +QG +P+ I   LP L   N+SRN   GSIP   
Sbjct: 903  NSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPSFG 962

Query: 300  HM---------------------TMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLD 338
             M                      MGC SL+ L LS N L G +F R  NL +L  L+LD
Sbjct: 963  GMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELD 1022

Query: 339  ANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL 398
             N F+G IP+ L N S L  LY+S N ISGK+P W+GN+SNL  ++MPNN LEGPIP   
Sbjct: 1023 DNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEF 1081

Query: 399  CKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSY 456
            C L+ L +LDL  NN+SGSLPSCFS  LL  VHL  N + G L   F     L TLD+  
Sbjct: 1082 CSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRN 1141

Query: 457  NRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL- 515
            N  SG IP+WI   S LS L+L  N+ +G++P QLC L ++ ++DLS+N+LSG IPSCL 
Sbjct: 1142 NNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLN 1201

Query: 516  ---YKTALGEGNYDS----AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT 568
               ++T    G +       +P        S       V+ +       +   EF TKN 
Sbjct: 1202 KIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNR 1261

Query: 569  SYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQI 628
            + +Y+G  L  M G+DLS NKLTG IP +IG L+ + ALNLSHN L G IP+ FS L  I
Sbjct: 1262 TDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSI 1321

Query: 629  ESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
            ESLDLSYN L G IP +L EL  LA+FSVA+NNLSGK+P+   QF TF ENSY GN  LC
Sbjct: 1322 ESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLC 1381

Query: 689  GQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRR 748
            G  L ++C            EE +    D   FY++F  SYV+V+LG+  VLY+N  WR+
Sbjct: 1382 GSLLRKNC---SRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRK 1438

Query: 749  RWFYLIETYIAFC 761
            +WF++I+  I  C
Sbjct: 1439 KWFHVIDVLITCC 1451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 347/789 (43%), Positives = 467/789 (59%), Gaps = 50/789 (6%)

Query: 22   LRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCEL 81
            L  + L  +    LE L L G+ L+   L  ++ L+S+K L + N    G+    G CE+
Sbjct: 516  LDGFQLLPMRLGKLENLCLGGNQLNSSILSILSGLSSLKSLDLSNNMFTGS----GWCEM 571

Query: 82   VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
             +L++L +  NN GG+LP CL N++SL++LDI+ NQ TGNI+ SPL  L SLE L +SNN
Sbjct: 572  KNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFLSLSNN 631

Query: 142  QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHS-LTPKFQLQNISLSGC--RCDFTFP 198
             F++P S +PF NHS LK F  + NRL +E  +   L PKFQL   SLS      +   P
Sbjct: 632  LFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLSKTTEALNVEIP 691

Query: 199  RFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTT 258
             FLYYQ+ LR++DLSH N+ G FP+WLL+NN  LE L L+ NS+ G  Q+  +P  ++T 
Sbjct: 692  NFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTE 751

Query: 259  IDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL--HMTMGCFSLQ------- 309
            +D+S N + G IP  I    P L+   +++N   G IP  L    ++G   L        
Sbjct: 752  LDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTV 811

Query: 310  ---------ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLN-CSLLGGL 359
                      L LSNN+L G I +  FN +    L L  N F G I ++ LN       L
Sbjct: 812  KLELLTTIWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVL 871

Query: 360  YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSL 418
             LS+N  SG +P+W  N +NL+ I +  NH EGPI  +  CKL+ L  LDL  NN+ G +
Sbjct: 872  DLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFGYI 931

Query: 419  PSCFSSWLLTQVHLSRNKIEGQLEDVF--GDILVTLDLSYNRFSGRIPNWIDKLSHLSYL 476
            PSCF+S  +T VHLS+N++ G L+  F     LVT+DL  N F+G IPNW+  LS LS L
Sbjct: 932  PSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSLSVL 991

Query: 477  ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNY 536
            +L  N+L+GE+PVQLCLL+QL ++D+S N LSG +PSCL      E +    A  + G +
Sbjct: 992  LLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESS--QKALMNLGGF 1049

Query: 537  ---GASSPAAGEAVSPSGSSTMRK----------EESVEFRTKNTSYYYQGRILKIMFGL 583
               G    A  E + P   +++            EE +EF TKN  Y Y+G+IL  M G+
Sbjct: 1050 LLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKILSYMSGI 1109

Query: 584  DLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIP 643
            DLS N   G IP + G L+ I +LNLSHNNL G+IP+TFS+L +IESLDLSYN   G IP
Sbjct: 1110 DLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNGDIP 1169

Query: 644  TQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPN---G 700
             QL E+  L +FSVAHNNLSGK P+R  QF TF E+ Y+GN  LCG PL  +C       
Sbjct: 1170 PQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEVVLS 1229

Query: 701  SPNVSV---SNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETY 757
             P +S    ++E++DD FIDM  FYI+F + Y +V++ I  VLY+NPYWRRRW Y IE  
Sbjct: 1230 QPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRRWLYFIEDC 1289

Query: 758  IAFCYYLLV 766
            I  CYY +V
Sbjct: 1290 IDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 345/796 (43%), Positives = 452/796 (56%), Gaps = 76/796 (9%)

Query: 6    LLQSLWTPFPNLETLELRDYHLE---LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHL 62
            +LQSL + +P+L+TL L+D +L      N + LE L LD ++L I FLQ+   L ++K L
Sbjct: 332  ILQSLRS-WPSLKTLSLKDTNLSQGTFFNSSTLEELHLDNTSLPINFLQNTGALPALKVL 390

Query: 63   SMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
            S+  C L+GT   QG CEL +L++L +  NN GG LP CL N++SL++LD++ NQ TGNI
Sbjct: 391  SVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNI 450

Query: 123  SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIES-HSLTPKF 181
            +  PL  L SLE L +SNN F++PIS +PF NHS LK F  + NRL  E  +  +L PKF
Sbjct: 451  AFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLIPKF 510

Query: 182  QLQNISLSGC----RCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLL 237
            QL    LS        +     FLYYQ++LR +DLSH N+ G FP+WLL+NN  +E L L
Sbjct: 511  QLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYL 570

Query: 238  ANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC 297
            + NS  G  Q+  +P   +T +D+S N I G IP  I    P L    ++ N   G IP 
Sbjct: 571  SENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPS 630

Query: 298  SLHMTMGCFS----------------------LQILALSNNSLQGHIFSRSFNLTNLVTL 335
             L    G FS                      +Q+L LSNNSL G I +  FN +    L
Sbjct: 631  CL----GNFSSLSFLDLSNNQLSTVKLEQLTTIQVLKLSNNSLGGQIPTSVFNSSISQYL 686

Query: 336  QLDANQFTGGIPE-NLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI 394
             L  N F G I +  L    +   L LS+N  SG +P+   N +    + +  N  +GPI
Sbjct: 687  YLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPI 746

Query: 395  PANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVF--GDILVTL 452
            P + CKL+ L  LDL  N +SG +PSCF+   +T +HLS+N++ G L   F     LVT+
Sbjct: 747  PRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYGFYNSSSLVTM 806

Query: 453  DLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
            DL  N F G IPNWI  LS LS L+L  NN +GE+ VQLCLL+QL ++D+S N LSG +P
Sbjct: 807  DLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLP 866

Query: 513  SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYY 572
            SCL    L                                    KE     R     +  
Sbjct: 867  SCLGNLTL------------------------------------KEIPENARGSRIWFSV 890

Query: 573  QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLD 632
             G++L  M+G+DLS N   G IP + G L+ I +LNLSHNNL G+IP+TFS+L QIESLD
Sbjct: 891  MGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLD 950

Query: 633  LSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATF-TENSYDGNSLLCGQP 691
            LSYN L G IP QL E+  L +FSVA+NNLSG+ P+R  QF TF  EN Y+GN  LCG P
Sbjct: 951  LSYNNLNGAIPPQLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPP 1010

Query: 692  LSESCYPNGSPNVSVSNEED-DDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRW 750
            L  +C     P   V N+E  DD FIDM  FYI+F + Y +V++ I  VLY+NPYWRRRW
Sbjct: 1011 LRNNCSEEAVPLQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRW 1070

Query: 751  FYLIETYIAFCYYLLV 766
             Y IE  I  CYY +V
Sbjct: 1071 SYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523235|ref|XP_003530247.1| PREDICTED: LOW QUALITY PROTEIN: protein BRASSINOSTEROID INSENSITIVE 1-like [Glycine max]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 340/803 (42%), Positives = 460/803 (57%), Gaps = 58/803 (7%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSM 64
           S L+SL+            D+H      +NLE LILD + L   FL++I  LTS+K LS+
Sbjct: 143 SSLKSLYLRANRFNASSFHDFH----RLSNLEHLILDYNNLENEFLKNIGELTSLKVLSL 198

Query: 65  RNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISS 124
           + C + GT  F    +L  L+EL +  N   G LP   VNMTSLR L+I+ N   GN  S
Sbjct: 199 QQCDINGTLPFSDWFKLKKLEELDLSGNQFEGPLPSSFVNMTSLRKLEISENHFIGNFDS 258

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLT---PKF 181
           + L  LTSLE      NQF++P+SF PF N SK+K  YG+ N++ ++   HSL    PKF
Sbjct: 259 N-LASLTSLEYFGFIGNQFEVPVSFTPFANLSKIKFIYGEGNKVVLD-SHHSLQTWIPKF 316

Query: 182 QLQNISLSGCRC--DFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
           +LQ + +S          P FL YQ+ L  +DLS   L G+FP+WLLENN ++   L  N
Sbjct: 317 KLQELIVSSTTATKSLPLPNFLLYQNNLTNIDLSGWKLEGDFPHWLLENNTKITKALFRN 376

Query: 240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTG-IGAFLPRLEHFNISRNVLNGSIPCS 298
            S +G FQ+P+ PL  + TIDVS N + G IP+  I +  P L++ N+S N + GSIP  
Sbjct: 377 CSFTGTFQLPMRPLHNIQTIDVSDNTVNGQIPSNNISSIYPNLQYLNLSGNNIQGSIPSE 436

Query: 299 L-HMTM---------------------GCFSLQILALSNNSLQGHIFSRSFNLTN-LVTL 335
           L  M++                       + L+ L LSNN L+G IF    N+ N L TL
Sbjct: 437 LGQMSLLYSLDLSENQLSGKIPENTFADGYRLRFLKLSNNMLEGPIF----NIPNGLETL 492

Query: 336 QLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP 395
            L  N+FTG +P N+ N S++  L +S+NH+ GKIP ++ N S L  + M NNH EG IP
Sbjct: 493 ILSHNRFTGRLPSNIFNSSVVS-LDVSNNHLVGKIPSYVYNFSTLTGLYMSNNHFEGSIP 551

Query: 396 ANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD--ILVTLD 453
             L +L  LT LDL  NN++G +PS F++  +  +HL+ N + G  + +F +   LV LD
Sbjct: 552 IELAELEDLTYLDLSQNNLTGHVPS-FANSPVKFMHLNNNHLSGLSKRMFNENSSLVMLD 610

Query: 454 LSYNRFSGRIPNWIDKLSH--LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTI 511
           LSYN  S  I + I  LS+  L++L+L  N+  G++P QLC L  L ++DLSHNN SG I
Sbjct: 611 LSYNEISNNIQDMIQDLSYTRLNFLLLKGNHFIGDIPKQLCRLTDLSILDLSHNNFSGVI 670

Query: 512 PSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR---KEESVEFRTKNT 568
           P+CL K      ++D       G  G          S S + T+     +E   F +K  
Sbjct: 671 PNCLGKMPFEVEDFDLLLGYFSGWLGNR-----HYWSYSTNGTLHLPNVQEKTNFTSKKR 725

Query: 569 SYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQI 628
           +  Y G IL  M G+DLS NKL G IP ++G L  IR LNLSHN+L G IP+TFSHL Q 
Sbjct: 726 TDTYMGSILVYMSGIDLSHNKLKGNIPSELGNLTKIRTLNLSHNDLTGQIPATFSHLVQT 785

Query: 629 ESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
           ESLDLS+NML G+IP QL  L +L +FSVAHNNLSG  P+   QF+TF E+SY+GN  LC
Sbjct: 786 ESLDLSFNMLNGQIPPQLTMLTSLEVFSVAHNNLSGPTPEFKEQFSTFDESSYEGNPFLC 845

Query: 689 GQPLSESCYPNGSPNVSVSNEEDD---DNFIDMGSFYITFIISYVIVILGIFGVLYVNPY 745
           G PL +SC P   P V  ++   D   D  +DM  F ++F++SY   +L     LY+NPY
Sbjct: 846 GLPLPKSCNP--PPTVIPNDSNTDGHYDTLVDMYFFCVSFVVSYTSALLVTAAALYINPY 903

Query: 746 WRRRWFYLIETYIAFCYYLLVDH 768
           WR  WFY +E     CYY +VD+
Sbjct: 904 WRHAWFYYMELASMNCYYFIVDN 926

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.917	0.787	0.377	2.3e-101
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.948	0.790	0.341	4.7e-96
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.908	0.653	0.336	1.3e-84
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.640	0.499	0.369	4.4e-84
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.919	0.733	0.326	2.2e-80
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.903	0.790	0.323	1.1e-78
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.890	0.719	0.302	4.8e-71
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.842	0.523	0.304	2.1e-61
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.880	0.584	0.288	1.1e-59
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.784	0.489	0.301	2.3e-56

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 285/754 (37%), Positives = 380/754 (50%)

Query:    28 ELLNFTNLEVLILDGSALHIRF-LQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQE 86
             EL N TNLE+L L G+ +     ++    L  +K L + +  +Y + ++Q  CE+ +LQE
Sbjct:   165 ELKNLTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQE 224

Query:    87 LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
             L +   N  G LP C  N+  LR LD++SNQ+TGNI  S    L SLE L +S+N F+  
Sbjct:   225 LDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGF 283

Query:   147 ISFEPFFNHSKLKKF-YGQKNRLF-VEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQ 204
              S  P  N +KLK F +  K+ +  V+IES +  P FQL  + L  C  +   P FL YQ
Sbjct:   284 FSLNPLTNLTKLKVFIFSSKDDMVQVKIES-TWQPLFQLSVLVLRLCSLE-KIPNFLMYQ 341

Query:   205 HELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPVNPLKQLTTIDVSKN 264
               L  VDLS   + G  P                  S +  FQMP + +  L  +D S+N
Sbjct:   342 KNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTS-VHNLQVLDFSEN 399

Query:   265 FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMG-CFSLQILALSNNSLQGHIF 323
              I G  P   G  LP L H N S N   G+ P S    MG  +++  L LS N+L G + 
Sbjct:   400 NIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSS----MGEMYNISFLDLSYNNLSGEL- 454

Query:   324 SRSF--NLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLV 381
              +SF  +  +L  LQL  N+F+G                  +N  +GKI   L  L +L 
Sbjct:   455 PQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLC 514

Query:   382 DIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQL 441
              + M NN LEG +P  L    +L  LDL  N +SG+LPS  S  L   + L  N   G +
Sbjct:   515 ILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVS--LDNVLFLHNNNFTGPI 572

Query:   442 EDVF-GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXXXXX 500
              D F G I + LDL  N+ SG IP ++D    +S+L+L  N+L G +P            
Sbjct:   573 PDTFLGSIQI-LDLRNNKLSGNIPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLL 630

Query:   501 XXSHNNLSGTIPSCLYKTALGEG------NYDSAAPTSEGNYGA-SSPAAGEAVSPSGSS 553
               S N L+G IPSC    + G        NY  A        G   S    E      S+
Sbjct:   631 DLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSN 690

Query:   554 TMRKEESVEFRTKNTSYYYQGRI------LKIMFGLDLSCNKLTGEIPFQIGYLNMIRAL 607
                 E  V+F TK     Y G        L  M+GLDLS N+L+G IP ++G L  +RAL
Sbjct:   691 YF--EIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRAL 748

Query:   608 NLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP 667
             NLSHN L   IP +FS L  IESLDLSYNMLQG IP QL  L +LAIF+V++NNLSG +P
Sbjct:   749 NLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIP 808

Query:   668 DRVGQFATFTENSYDGNSLLCGQPLSESCYP--NGSPNVSVSNEEDDDNFIDMGSFYITF 725
                 QF TF ENSY GN LLCG P   SC    N   N +   E+D +  IDM  FY + 
Sbjct:   809 QGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWST 867

Query:   726 IISYVIVILGIFGVLYVNPYWRRRWFYLIETYIA 759
               +YV  ++GI  ++ V+  WRR W  L++ +IA
Sbjct:   868 AGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIA 901

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 264/772 (34%), Positives = 386/772 (50%)

Query:    16 NLETLELRDYHL-----ELLNFTNLEVLILDGSALHIRF-LQSIAVLTSVKHLSMRNCYL 69
             NLE L+LR   L     EL++   L+ L L  +       LQ +  L +++ L +   ++
Sbjct:   174 NLELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHV 233

Query:    70 YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
              G    +  C+L +L++L +  N+  G +P CL ++  LR+LD++SNQ++G++ SS    
Sbjct:   234 DGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSS-FSS 292

Query:   130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS 189
             L SLE L +S+N F    S  P  N + LK     +     +I S  L  K +L+ + LS
Sbjct:   293 LESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQK-KLRLVDLS 351

Query:   190 GCRCDFTFPRFLYYQH-ELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFFQM 248
                     P +L   + EL  + L + N    FP                  ++  F   
Sbjct:   352 SNNLSGNIPTWLLTNNPELEVLQLQN-NSFTIFPIPTMVHNLQIFDFSAN--NIGKFPDK 408

Query:   249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL 308
               + L  L  ++ S N  QG+ PT IG  +  +   ++S N  +G +P S  +T GC S+
Sbjct:   409 MDHALPNLVRLNGSNNGFQGYFPTSIGE-MKNISFLDLSYNNFSGKLPRSF-VT-GCVSI 465

Query:   309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISG 368
               L LS+N   G    R  N  +L  L++D N FTG I                +N +SG
Sbjct:   466 MFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSG 525

Query:   369 KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT 428
              IP+WL     L  +++ NN LEG IP +L  + FL+ LDL  N  SG+LPS   S L  
Sbjct:   526 AIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGI 585

Query:   429 QVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488
              + L  N   G + D     +  LDL  N+ SG IP + D  S ++ L+L  NNL G +P
Sbjct:   586 YMFLHNNNFTGPIPDTLLKSVQILDLRNNKLSGSIPQFDDTQS-INILLLKGNNLTGSIP 644

Query:   489 VXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVS 548
                           S N L+G IPSCL   + G    D+ A     ++  +S       S
Sbjct:   645 RELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKS 704

Query:   549 PS-------GSSTMRKEESVEFRTKNTSYYYQGR------ILKIMFGLDLSCNKLTGEIP 595
                        ST ++ E ++F  K     Y GR      IL++M+G+DLS N+L+G IP
Sbjct:   705 TFLVDKIEVDRSTYQETE-IKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIP 763

Query:   596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIF 655
              ++G L  +R LNLSHN+L+G+IPS+FS L  +ESLDLS+NMLQG IP  L  L +LA+F
Sbjct:   764 TELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVF 823

Query:   656 SVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSN--EEDDD 713
              V+ NNLSG +P    QF TF E SY GN LLCG P S SC  N SP  + +   EEDD 
Sbjct:   824 DVSSNNLSGIIPQG-RQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDK 882

Query:   714 NFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIAFCYYLL 765
               IDM  FY +    YV  ++G+  ++  +  WRR W  +++ +IA   ++L
Sbjct:   883 AAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIASAKHVL 934

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 253/751 (33%), Positives = 365/751 (48%)

Query:    33 TNLEVLILDGSAL---HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHI 89
             T+L+VL    + L   H  +L  I  L  ++ L + +  L  TS    L  L HL+ L +
Sbjct:   332 TSLQVLDFKRNQLSLTHEGYL-GICRLMKLRELDLSSNAL--TSLPYCLGNLTHLRTLDL 388

Query:    90 GYNNIGGTLPWCLVNMTS-LRILDIASNQITGNISSSPLRYLTSLEELRVSNN----QFQ 144
               N + G L   +  + S L  L +  N   G+   + L   T L   ++S+     Q Q
Sbjct:   389 SNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQ 448

Query:   145 IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQ 204
                S+ P F   +LK  Y     L   +    L  +  L  + LS  +   TFP +L   
Sbjct:   449 TESSWAPLF---QLKMLYLSNCSLGSTMLGF-LVHQRDLCFVDLSHNKLTGTFPTWLVKN 504

Query:   205 H-ELRYVDLSHMNL-RGEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPVNPLKQLTTIDVS 262
             +  L+ + LS  +L + + P                  S+     M V P   L  ++ S
Sbjct:   505 NTRLQTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGM-VFP--NLRFMNFS 561

Query:   263 KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI 322
              N  QG IP+ IG  +  L+  ++S N L G +P  +    GC+SL++L LSNN LQG I
Sbjct:   562 SNHFQGTIPSSIGE-MKSLQVLDMSSNGLYGQLP--IMFLSGCYSLRVLKLSNNQLQGKI 618

Query:   323 FSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVD 382
             FS+  NLT LV L LD N FTG + E              DN  SG +P W+G +S L  
Sbjct:   619 FSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSY 678

Query:   383 IIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE 442
             + M  N L+GP P  L +  ++ V+D+  N+ SGS+P   +   L ++ L  N+  G + 
Sbjct:   679 LYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVP 737

Query:   443 -DVFGDI-LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXXXXX 500
              ++F    L  LDL  N FSG+I N ID+ S L  L+L NN+ +  +P            
Sbjct:   738 GNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLL 797

Query:   501 XXSHNNLSGTIPSCLYKTALGEGNYD---SAAPTSEGNYGASSPAA--GEAVS-PSG--S 552
               SHN   G IPSC  K + G    D   S     + +Y    P    G  ++   G  +
Sbjct:   798 DLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRN 857

Query:   553 STMRKEESV-EFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSH 611
                 K  +V +F TK+    YQG IL+ M GLDLS N+L+GEIP +IG L  IR+LNLS 
Sbjct:   858 GYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSS 917

Query:   612 NNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVG 671
             N L G+IP + S L  +ESLDLS N L G IP  L +L +L   ++++NNLSG++P + G
Sbjct:   918 NRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFK-G 976

Query:   672 QFATFTENSYDGNSLLCGQPLSESCY-------PNGSPNVSVSNEEDDDNFIDMGSFYIT 724
                TF E SY GN+ LCG P +++C        P+ S +      E++ N IDM  FY T
Sbjct:   977 HLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWT 1036

Query:   725 FIISYVIVILGIFGVLYVNPYWRRRWFYLIE 755
                 Y+   L +F  LY++  W R WFY ++
Sbjct:  1037 CAAVYISTSLALFAFLYIDSRWSREWFYRVD 1067

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 190/514 (36%), Positives = 286/514 (55%)

Query:   253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILA 312
             L  L  ++++ N  QG++P+ +   +  +E  ++S N  +G +P       GC++L IL 
Sbjct:   451 LPHLVCVNLAYNGFQGNLPSSLDN-MKSIEFLDLSHNRFHGKLP--RRFLKGCYNLTILK 507

Query:   313 LSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPK 372
             LS+N L G +F  + N T L  + +D N FTG I +              +N ++G IP 
Sbjct:   508 LSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPS 567

Query:   373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHL 432
             W+G    L  + + NN LEG IP +L  +++L +LDL  N +SG +P   SS     V L
Sbjct:   568 WIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLL 627

Query:   433 -SRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXX 491
                N + G + D     ++ LDL  NR SG +P +I+   ++S L+L  NN  G++P   
Sbjct:   628 LQNNNLSGVIPDTLLLNVIVLDLRNNRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQF 686

Query:   492 XXXXXXXXXXXSHNNLSGTIPSCLYKTALG--EGNYDSAAPTSEGNYG-ASSPAAGEAVS 548
                        S+N  +G+IPSCL  T+ G  +G+ DS        +G A  P   E++ 
Sbjct:   687 CSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGD-DSYRYDVPSRFGTAKDPVYFESLL 745

Query:   549 PSGSSTMRKEES----VEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMI 604
                   M  E +    +EF TK+    Y G  LK++FG+DLS N+L+GEIP ++G L  +
Sbjct:   746 MIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVEL 805

Query:   605 RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664
              ALNLSHNNL G I  +FS L  +ESLDLS+N LQG IP QL ++ +LA+F+V++NNLSG
Sbjct:   806 EALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSG 865

Query:   665 KVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYIT 724
              VP    QF TF   SY GN LLCG+ +  SC  N   + + +  E D++ +DM SFY +
Sbjct:   866 IVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASNNF-HPTDNGVEADESTVDMESFYWS 923

Query:   725 FIISYVIVILGIFGVLYVNPYWRRRWFYLIETYI 758
             F+ +YV ++LGI   L  +  W R WFY+++ ++
Sbjct:   924 FVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 247/756 (32%), Positives = 368/756 (48%)

Query:    28 ELLNFTNLEVLILDGSALHIRFLQSI-AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQE 86
             EL   TNLEVL L  + L     + +   + +++ L +R  Y  G      L  L  L+ 
Sbjct:   230 ELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVC-LGNLNKLRV 288

Query:    87 LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
             L +  N + G LP    ++ SL  L ++ N   G  S +PL  LT L+  R+S+    + 
Sbjct:   289 LDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQ 348

Query:   147 ISFEPFFNHSKLKKFYGQKNRL-FVEIES--HSLTPKFQLQNISLSGCRCDFTFPRFLYY 203
             +  E  +    L KF      L F  +    + L  +  L+ + LS  R     P +L  
Sbjct:   349 VETESNW----LPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLE 404

Query:   204 QH-ELRYVDLSHMNLR-GEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPV-NPLKQLTTID 260
              + EL+ + L + +    + P                   ++G     + + L +L  ++
Sbjct:   405 NNPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSAN----DITGVLPDNIGHVLPRLLHMN 460

Query:   261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
              S N  QG++P+ +G  +  +   ++S N  +G +P SL +T GCFSL  L LS+NS  G
Sbjct:   461 GSHNGFQGNLPSSMGE-MNDISFLDLSYNNFSGELPRSL-LT-GCFSLITLQLSHNSFSG 517

Query:   321 HIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLG-NLSN 379
              I      LT+L+ L++  N FTG I                +N ++G I   +  + S+
Sbjct:   518 PILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSH 577

Query:   380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCF-SSWLLTQVHLSRNKIE 438
             L+ +++ NN LEG +P +L  ++ L  LDL  N +SG LPS   +S    ++ L  N   
Sbjct:   578 LIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFT 637

Query:   439 GQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXXX 498
             G L     +    LDL  N+ SG IP +++    ++ L+L  NNL G +P          
Sbjct:   638 GPLPVTLLENAYILDLRNNKLSGSIPQFVNTGKMIT-LLLRGNNLTGSIPRKLCDLTSIR 696

Query:   499 XXXXSHNNLSGTIPSCL--YKTALGEG----NYD---SAAPTSEGNYGASSPAAGEAVSP 549
                 S N L+G IP CL    T LGEG     +    S   + +  +  S+    E +  
Sbjct:   697 LLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLY 756

Query:   550 SGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNL 609
               S+ M  E  +EF  K     + G  L  M+GLDLS N+L+G IP ++G L+ +RALNL
Sbjct:   757 YDSTYMIVE--IEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNL 814

Query:   610 SHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDR 669
             S N L  +IP+ FS L  IESLDLSYNMLQG IP QL  L +LA+F+V+ NNLSG +P  
Sbjct:   815 SRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG 874

Query:   670 VGQFATFTENSYDGNSLLCGQPLSESCY----PNGSPNVSVSNEEDDDN--FIDMGSFYI 723
              GQF TF +NSY GN LLCG P   SC        + N     EEDDD+   IDM   Y 
Sbjct:   875 -GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYW 933

Query:   724 TFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYIA 759
             T   +Y I ++GI  ++  +  WRR W  +++ +IA
Sbjct:   934 TTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIA 969

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 246/761 (32%), Positives = 373/761 (49%)

Query:    28 ELLNFTNLEVLILDGSALHIRFL-QSIAVLTSVKHLSMRNCYLYGTSDFQGLC--ELVHL 84
             EL N  NL  L L  +        Q I  L  ++ L +      G      LC      L
Sbjct:   148 ELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIP---LCFSRFSKL 204

Query:    85 QELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
             + L +  N++ G +P+ + +  S+  L +  N   G  S   +  LT L+  ++S+    
Sbjct:   205 RVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGM 264

Query:   145 IPISFEPFFNHSKLKKFYGQKNRLFVEIESH-SL--TPKF-----QLQNISLSGCRCDFT 196
             + I  E   N S      G +++L   + SH +L   P F     +L+ I LS       
Sbjct:   265 LQI-VET--NVSG-----GLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGV 316

Query:   197 FPRFLYYQH-ELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFF-QMPVNP-- 252
             FP +L   + EL+ + L + + +                      S++ F  Q+P +   
Sbjct:   317 FPTWLLENNTELQALLLQNNSFK------TLTLPRTMRRLQILDLSVNNFNNQLPKDVGL 370

Query:   253 -LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQIL 311
              L  L  +++S N   G++P+ + A +  +E  ++S N  +G +P +L    GC+SL  L
Sbjct:   371 ILASLRHLNLSNNEFLGNMPSSM-ARMENIEFMDLSYNNFSGKLPRNLFT--GCYSLSWL 427

Query:   312 ALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIP 371
              LS+N   G I  +S + T+L+TL +D N FTG IP               +N ++G IP
Sbjct:   428 KLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIP 487

Query:   372 KWLGNLSNLVDII-MPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
             +WLGN    ++++ + NN L+G IP +L  + +L +LDL  N +SGSLP   SS     +
Sbjct:   488 RWLGNF--FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYIL 545

Query:   431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVX 490
              L  N + G + D     L  LDL  N+ SG IP +    S +S ++L  NNL G++PV 
Sbjct:   546 DLHNNNLTGSIPDTLWYGLRLLDLRNNKLSGNIPLFRSTPS-ISVVLLRENNLTGKIPVE 604

Query:   491 XXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAA----PTSE-GNY-GASSPAAG 544
                         +HN L+ +IPSC+   + G G + +A     P S   N+    +    
Sbjct:   605 LCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYY 664

Query:   545 EAVSPSGSSTMRKEES----VEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGY 600
             E++  S   ++         VEF  K     Y    L  MFGLDLS N+L+G IP ++G 
Sbjct:   665 ESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGD 724

Query:   601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660
             L  +R+LNLS N+L G+IP +FS+L  IESLDLS+N L G IP+QL  L +L +F+V++N
Sbjct:   725 LKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYN 784

Query:   661 NLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVSVSNE-EDDDN--FID 717
             NLSG +P    QF TF E SY GN LLCG P   SC   G   +S   E EDDD    +D
Sbjct:   785 NLSGVIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSC---GGTTISSGKEYEDDDESGLLD 840

Query:   718 MGSFYITFIISYVIVILGIFGVLYVNPYWRRRWFYLIETYI 758
             +   + +   +YV V++G    L  +  WRR WF L++T+I
Sbjct:   841 IVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 223/737 (30%), Positives = 351/737 (47%)

Query:    50 LQS-IAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL 108
             +QS I  L +++ L +    L G      L  L  L+ L +  N + GT+P  L ++ SL
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLP-SCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSL 294

Query:   109 RILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPI----SFEPFF----------N 154
               L +  N   G+ S   L  L++L  L++ +    + +    S++P F          N
Sbjct:   295 EYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCN 354

Query:   155 HSKLKKFY-GQKNRLFVEIESHSLT---PKFQL-QNISLSGCRCD---FTFPRFLYYQHE 206
               K+  F   QK+   V++  ++++   P + L  N  L         FT  +     H 
Sbjct:   355 MEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHN 414

Query:   207 LRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPVNPLKQLTTIDVSKNFI 266
             L ++D+S  +    FP                  +        +  +  +  +D+S+N  
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query:   267 QGHIPTGIGAFLPRLEHFNISRNVLNGSI-PCSLHMTMGCFSLQILALSNNSLQGHIFSR 325
              G++P         +    +S N L+G I P S + T    ++  L + NN   G I   
Sbjct:   475 HGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFT----NILGLFMDNNLFTGKIGQG 530

Query:   326 SFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVDIIM 385
               +L NL  L +  N  TG IP               DN + G IP  L N S+L  + +
Sbjct:   531 LRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDL 590

Query:   386 PNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVF 445
               N L G IP      N + +L L+ N +SG++P    +  +  + L  N+  G++ +  
Sbjct:   591 SANSLSGVIPPQHDSRNGVVLL-LQDNKLSGTIPDTLLA-NVEILDLRNNRFSGKIPEFI 648

Query:   446 G--DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VXXXXXXXXXXXXX 502
                +I + L L  N F+G+IP+ +  LS++  L L+NN L G +P               
Sbjct:   649 NIQNISILL-LRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECT 707

Query:   503 SHNNLSG-TIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESV 561
             S++   G + PS ++       + D ++  + G Y  S            ++T  K   +
Sbjct:   708 SYDYDFGISFPSDVFNGF--SLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTK---I 762

Query:   562 EFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPST 621
             EF TK+    Y G  LK++FG+DLS N+L+GEIP + G L  +RALNLSHNNL G IP +
Sbjct:   763 EFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKS 822

Query:   622 FSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY 681
              S + ++ES DLS+N LQG+IP+QL EL +L++F V+HNNLSG +P    QF TF   SY
Sbjct:   823 ISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQG-RQFNTFDAESY 881

Query:   682 DGNSLLCGQPLSESCYPNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLY 741
              GN LLCGQP + SC  N S   + +  E D++ IDM SFY++F  +YV +++GI   L 
Sbjct:   882 FGNRLLCGQPTNRSCN-NNSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLS 940

Query:   742 VNPYWRRRWFYLIETYI 758
              +  W R WFY ++ +I
Sbjct:   941 FDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 209/686 (30%), Positives = 321/686 (46%)

Query:    35 LEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNI 94
             L+ LIL  + L       I   TS+   +     L G+   + L  L +LQ L++G N+ 
Sbjct:   194 LQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSF 252

Query:    95 GGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFN 154
              G +P  L ++ S++ L++  NQ+ G I    L  L +L+ L +S+N     +  E F+ 
Sbjct:   253 SGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLT-GVIHEEFWR 310

Query:   155 HSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSH 214
              ++L+     KNRL   +     +    L+ + LS  +     P  +     L+ +DLS+
Sbjct:   311 MNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSN 370

Query:   215 MNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGI 274
               L G+ P                  SL G     ++ L  L    +  N ++G +P  I
Sbjct:   371 NTLTGQIPDSLFQLVELTNLYLNNN-SLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI 429

Query:   275 GAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVT 334
             G FL +LE   +  N  +G +P  +     C  LQ +    N L G I S    L +L  
Sbjct:   430 G-FLGKLEIMYLYENRFSGEMPVEIG---NCTRLQEIDWYGNRLSGEIPSSIGRLKDLTR 485

Query:   335 LQLDANQFTGGIPEXXXXXXXXXXXXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI 394
             L L  N+  G IP               DN +SG IP   G L+ L   ++ NN L+G +
Sbjct:   486 LHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545

Query:   395 PANLCKLNFLTVLDLEVNNISGSL-PSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVT 451
             P +L  L  LT ++   N  +GS+ P C SS  L+   ++ N  EG +    G    L  
Sbjct:   546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKSTNLDR 604

Query:   452 LDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXXXXXXXSHNNLSGTI 511
             L L  N+F+GRIP    K+S LS L ++ N+L G +PV             ++N LSG I
Sbjct:   605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query:   512 PSCLYKTAL-GE-----GNYDSAAPTSEGNYGASSPAAGEAVSPSGS-----STMRKEES 560
             P+ L K  L GE       +  + PT   +         +  S +GS       ++   +
Sbjct:   665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNA 724

Query:   561 VEFRTKNTSYYYQGRILKI--MFGLDLSCNKLTGEIPFQIGYLNMIR-ALNLSHNNLMGT 617
             +       S      I K+  +F L LS N LTGEIP +IG L  ++ AL+LS+NN  G 
Sbjct:   725 LNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGR 784

Query:   618 IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFT 677
             IPST S L ++ESLDLS+N L G++P Q+ ++ +L   ++++NNL GK+     QF+ + 
Sbjct:   785 IPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQ 841

Query:   678 ENSYDGNSLLCGQPLSESCYPNGSPN 703
              +++ GN+ LCG PLS  C   GS N
Sbjct:   842 ADAFVGNAGLCGSPLSH-CNRAGSKN 866

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.1e-59, P = 1.1e-59
 Identities = 212/735 (28%), Positives = 325/735 (44%)

Query:    28 ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQEL 87
             E+   T L  LIL  +         I  L ++ +L +RN  L G    + +C+   L  +
Sbjct:   115 EIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP-EEICKTSSLVLI 173

Query:    88 HIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF--QI 145
                YNN+ G +P CL ++  L++   A N +TG+I  S +  L +L +L +S NQ   +I
Sbjct:   174 GFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLDLSGNQLTGKI 232

Query:   146 PISFEPFFNHSKL-----------KKFYGQKNRLF-VEIESHSLTPKF--------QLQN 185
             P  F    N   L               G  + L  +E+  + LT K         QLQ 
Sbjct:   233 PRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQA 292

Query:   186 ISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGF 245
             + +   +   + P  L+   +L ++ LS  +L G                     + +G 
Sbjct:   293 LRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPI-SEEIGFLESLEVLTLHSNNFTGE 351

Query:   246 FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGC 305
             F   +  L+ LT + V  N I G +P  +G  L  L + +   N+L G IP S+     C
Sbjct:   352 FPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSIS---NC 407

Query:   306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNH 365
               L++L LS+N + G I  R F   NL  + +  N FTG IP+              DN+
Sbjct:   408 TGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNN 466

Query:   366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW 425
             ++G +   +G L  L  + +  N L GPIP  +  L  L +L L  N  +G +P   S+ 
Sbjct:   467 LTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNL 526

Query:   426 LLTQ-VHLSRNKIEGQL-EDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
              L Q + +  N +EG + E++F   +L  LDLS N+FSG+IP    KL  L+YL L  N 
Sbjct:   527 TLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNK 586

Query:   483 LEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPA 542
               G +P              S N L+GTIP  L  +      Y         N+ +++  
Sbjct:   587 FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL--------NF-SNNLL 637

Query:   543 AGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGY-L 601
              G      G   M +E  +     + S     +  K +F LD S N L+G IP ++   +
Sbjct:   638 TGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGM 697

Query:   602 NMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN 661
             +MI +LNLS N+  G IP +F +++ + SLDLS N L G+IP  L  L  L    +A NN
Sbjct:   698 DMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNN 757

Query:   662 LSGKVPDRVGQFATFTENSYDGNSLLCG--QPLSESCYPNGSPNVSVSNEEDDDNFIDMG 719
             L G VP+  G F     +   GN+ LCG  +PL        S + S          I +G
Sbjct:   758 LKGHVPES-GVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFSKRTRVI---LIILG 813

Query:   720 SFYITFIISYVIVIL 734
             S     ++  +++IL
Sbjct:   814 SAAALLLVLLLVLIL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 194/644 (30%), Positives = 305/644 (47%)

Query:    69 LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
             L GT   + L  L +L+ L++  N++ G +P  L  M+ L+ L + +NQ+ G I  S L 
Sbjct:   227 LNGTIPAE-LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKS-LA 284

Query:   129 YLTSLEELRVSNNQF--QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNI 186
              L +L+ L +S N    +IP   E F+N S+L       N L   +     +    L+ +
Sbjct:   285 DLGNLQTLDLSANNLTGEIP---EEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query:   187 SLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXXXXSLSGFF 246
              LSG +     P  L     L+ +DLS+ +L G  P                  +L G  
Sbjct:   342 VLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNN-TLEGTL 400

Query:   247 QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF 306
                ++ L  L  + +  N ++G +P  I A L +LE   +  N  +G IP  +     C 
Sbjct:   401 SPSISNLTNLQWLVLYHNNLEGKLPKEISA-LRKLEVLFLYENRFSGEIPQEIG---NCT 456

Query:   307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXXXXXXDNHI 366
             SL+++ +  N  +G I      L  L  L L  N+  GG+P               DN +
Sbjct:   457 SLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQL 516

Query:   367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL-PSCFSSW 425
             SG IP   G L  L  +++ NN L+G +P +L  L  LT ++L  N ++G++ P C SS 
Sbjct:   517 SGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS 576

Query:   426 LLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
              L+   ++ N  E ++    G+   L  L L  N+ +G+IP  + K+  LS L +++N L
Sbjct:   577 YLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNAL 635

Query:   484 EGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTA-LGE-----GNYDSAAPTSEGNYG 537
              G +P+             ++N LSG IP  L K + LGE       +  + PT   N  
Sbjct:   636 TGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCT 695

Query:   538 ASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSY-YYQGRI------LKIMFGLDLSCNKL 590
                  + +  S +GS              N     + G +      L  ++ L LS N L
Sbjct:   696 KLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSL 755

Query:   591 TGEIPFQIGYLNMIR-ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL 649
             TGEIP +IG L  ++ AL+LS+NN  G IPST   LS++E+LDLS+N L G++P  + ++
Sbjct:   756 TGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815

Query:   650 YALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
              +L   +V+ NNL GK+     QF+ +  +S+ GN+ LCG PLS
Sbjct:   816 KSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLS 856

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	779
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-43
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  232 bits (594), Expect = 1e-64
 Identities = 189/595 (31%), Positives = 275/595 (46%), Gaps = 61/595 (10%)

Query: 104 NMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
           N + +  +D++   I+G ISS+  R L  ++ + +SNNQ   PI  + F   S L+    
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
             N     I   S+     L+ + LS        P  +     L+ +DL    L G+ PN
Sbjct: 126 SNNNFTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 224 WLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH 283
            L  N   LE L LA+N L G     +  +K L  I +  N + G IP  IG  L  L H
Sbjct: 183 SL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNH 240

Query: 284 FNISRNVLNGSIPCSLHMTMGCFS-LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQF 342
            ++  N L G IP SL    G    LQ L L  N L G I    F+L  L++L L  N  
Sbjct: 241 LDLVYNNLTGPIPSSL----GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 343 TGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLN 402
           +G IPE ++    L  L+L  N+ +GKIP  L +L  L  + + +N   G IP NL K N
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 403 FLTVLDLEVNNISGSLPSCF-SSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRF 459
            LTVLDL  NN++G +P    SS  L ++ L  N +EG++    G    L  + L  N F
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 460 SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP-----SC 514
           SG +P+   KL  + +L ++NNNL+G +  +   +  LQ++ L+ N   G +P       
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

Query: 515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQG 574
           L    L    +  A P   G+                S  M+                  
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSL---------------SELMQ------------------ 503

Query: 575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS 634
                   L LS NKL+GEIP ++     + +L+LSHN L G IP++FS +  +  LDLS
Sbjct: 504 --------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 635 YNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCG 689
            N L G+IP  L  + +L   +++HN+L G +P   G F     ++  GN  LCG
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  167 bits (424), Expect = 9e-43
 Identities = 157/512 (30%), Positives = 226/512 (44%), Gaps = 123/512 (24%)

Query: 15  PNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
           PNLETL+L +  L      ++ +F++L+VL L G+ L  +   S+  LTS++ L++ +  
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
           L G    + L ++  L+ +++GYNN+ G +P+ +  +TSL  LD+  N +TG I SS L 
Sbjct: 200 LVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LG 257

Query: 129 YLTSLEELRVSNNQF--QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQN- 185
            L +L+ L +  N+    IP S                                F LQ  
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSI-------------------------------FSLQKL 286

Query: 186 ISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGF 245
           ISL                      DLS  +L GE P  L+   + LE L L +N+ +  
Sbjct: 287 ISL----------------------DLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFT-- 321

Query: 246 FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGC 305
                                 G IP  + + LPR                         
Sbjct: 322 ----------------------GKIPVALTS-LPR------------------------- 333

Query: 306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
             LQ+L L +N   G I        NL  L L  N  TG IPE L +   L  L L  N 
Sbjct: 334 --LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW 425
           + G+IPK LG   +L  + + +N   G +P+   KL  +  LD+  NN+ G + S    W
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS--RKW 449

Query: 426 LLTQVH---LSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
            +  +    L+RNK  G L D FG   L  LDLS N+FSG +P  +  LS L  L L+ N
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 482 NLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
            L GE+P +L   K+L  +DLSHN LSG IP+
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           GL L    L G IP  I  L  ++++NLS N++ G IP +   ++ +E LDLSYN   G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVG----QFATFTENSYDGNSLLCGQPLSESCY 697
           IP  L +L +L I ++  N+LSG+VP  +G      A+F   ++  N+ LCG P   +C 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLRACG 538

Query: 698 PNGSPNVSVSNEEDDDNFIDMGSFYITFIISYVIVILGIFGVLYVNPYWRRR 749
           P+ S    +                I F +S   + L I  +     +W+RR
Sbjct: 539 PHLSVGAKIG---------------IAFGVSVAFLFLVICAMC----WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 4e-10
 Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 15/107 (14%)

Query: 235 LLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGS 294
           L L N  L GF    ++ L+ L +I++S N I+G+IP  +G+ +  LE  ++S N  NGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 295 IPCSL-HMTMGCFSLQILALSNNSLQGH---------IFSRSFNLTN 331
           IP SL  +T    SL+IL L+ NSL G          +   SFN T+
Sbjct: 482 IPESLGQLT----SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 403 FLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRF 459
           F+  L L+   + G +P+  S    L  ++LS N I G +    G I  L  LDLSYN F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 460 SGRIPNWIDKLSHLSYLILANNNLEGEVPVQL 491
           +G IP  + +L+ L  L L  N+L G VP  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 5e-09
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 452 LDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTI 511
           L L      G IPN I KL HL  + L+ N++ G +P  L  +  L+++DLS+N+ +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 512 PSCL 515
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 32/93 (34%), Positives = 49/93 (52%)

Query: 335 LQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI 394
           L LD     G IP ++     L  + LS N I G IP  LG++++L  + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 395 PANLCKLNFLTVLDLEVNNISGSLPSCFSSWLL 427
           P +L +L  L +L+L  N++SG +P+     LL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS 367
           LQ + LS NS++G+I     ++T+L  L L  N F G IPE+L   + L  L L+ N +S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 368 GKIPKWLG 375
           G++P  LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 66/203 (32%), Positives = 90/203 (44%), Gaps = 27/203 (13%)

Query: 306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
             L  L L+ N L+ +I      LTNL +L LD N  T   P   L  S L  L LSDN 
Sbjct: 93  LPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW 425
           I   +P  L NL NL ++ +  N L   +P  L  L+ L  LDL  N IS          
Sbjct: 152 IE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS---------- 199

Query: 426 LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG 485
               +      +           L  LDLS N     + + +  L +LS L L+NN LE 
Sbjct: 200 ---DLPPEIELLSA---------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE- 245

Query: 486 EVPVQLCLLKQLQLIDLSHNNLS 508
           ++P  +  L  L+ +DLS+N +S
Sbjct: 246 DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 35/102 (34%), Positives = 52/102 (50%)

Query: 297 CSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLL 356
           C    T G + +  L L N  L+G I +    L +L ++ L  N   G IP +L + + L
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL 398
             L LS N  +G IP+ LG L++L  + +  N L G +PA L
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGS 417
           GL L +  + G IP  +  L +L  I +  N + G IP +L  +  L VLDL  N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 418 LPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP 464
           +P                   GQL       L  L+L+ N  SGR+P
Sbjct: 482 IPESL----------------GQLTS-----LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
           L +LDLS NR +         L +L  L L+ NNL    P     L  L+ +DLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
           L HLQ +++  N+I G +P  L ++TSL +LD++ N   G+I  S L  LTSL  L ++ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 141 N 141
           N
Sbjct: 500 N 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
           LDLS N+LT         L  ++ L+LS NNL    P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264
             L+ ++LS  ++RG  P   L +   LE L L+ NS +G     +  L  L  ++++ N
Sbjct: 442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 265 FIQGHIPTGIGAFLPRLEHFNISRNV----LNGSIPCSLHMTMG 304
            + G +P  +G  L     FN + N     + G   C  H+++G
Sbjct: 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVG 544

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 61/246 (24%), Positives = 93/246 (37%), Gaps = 37/246 (15%)

Query: 211 DLSHMNLRGEFPNWLLENNKELETL--------LLANNSLSGFFQMPVNPLKQLTTIDVS 262
            LS +          + +    E L        L  N +        +  L  LT++D+ 
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124

Query: 263 KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI 322
            N I   IP  IG     L+  ++S N +        ++     +L+ L LS N L   +
Sbjct: 125 NNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP----NLKNLDLSFNDLS-DL 178

Query: 323 FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVD 382
                NL+NL  L L  N+ +  +P  +   S L  L LS+N I  ++   L NL NL  
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236

Query: 383 IIMPNNHLEGPI---------------------PANLCKLNFLTVLDLEVNNISGSLPSC 421
           + + NN LE                         ++L  L  L  LDL  N++S +LP  
Sbjct: 237 LELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 422 FSSWLL 427
               LL
Sbjct: 297 ALLLLL 302

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662
           +++L+LS+N L       F  L  ++ LDLS N L    P     L +L    ++ NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
           +L+ L +  N +          + +L++LD++ N +T  IS      L SL  L +S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 143 F 143
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 11/213 (5%)

Query: 80  ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
           EL +L  L +  NNI    P   +  ++L+ LD++ N+I      SPLR L +L+ L +S
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLS 171

Query: 140 NNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPR 199
            N   +    +   N S L       N++  ++          L+ + LS          
Sbjct: 172 FN--DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSI-IELLS 226

Query: 200 FLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTI 259
            L     L  ++LS+   + E     + N   LETL L+NN +S      +  L  L  +
Sbjct: 227 SLSNLKNLSGLELSNN--KLEDLPESIGNLSNLETLDLSNNQISSI--SSLGSLTNLREL 282

Query: 260 DVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
           D+S N +   +P      L      N+   +  
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS 314
            L ++D+S N +   IP G    LP L+  ++S N L    P +     G  SL+ L LS
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLS 56

Query: 315 NNSL 318
            N+L
Sbjct: 57  GNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	779
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
PLN03150	623	hypothetical protein; Provisional	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG4341	483	consensus F-box protein containing LRR [General fu	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
PRK15386	426	type III secretion protein GogB; Provisional	97.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.98
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.98
KOG4308	478	consensus LRR-containing protein [Function unknown	93.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.87
smart00370	26	LRR Leucine-rich repeats, outliers.	92.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.53
smart00370	26	LRR Leucine-rich repeats, outliers.	90.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.74
KOG4308	478	consensus LRR-containing protein [Function unknown	90.62
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.63

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-63  Score=597.63  Aligned_cols=538  Identities=34%  Similarity=0.476  Sum_probs=348.6

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhc-cCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCL-VNMTSLRILDIASNQITGNISSSPLRYLTSLEEL  136 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L  136 (779)
                      +++.|++++|.+.+..+. .+..+++|++|+|++|++++.+|..+ ..+++|++|+|++|.+++.+|.   +.+++|++|
T Consensus        70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            556666666665555442 45556666666666666655555443 3566666666666666555543   235556666


Q ss_pred             EcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCC
Q 046050          137 RVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMN  216 (779)
Q Consensus       137 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~  216 (779)
                      ++++|.+++.++ ..+.++++|++|++++|.+.+.++ ..+..+.+|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       146 ~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        146 DLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             ECcCCcccccCC-hHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            666665554333 123333333322222222211111 112223344444444444444445555555555555555555


Q ss_pred             CCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccC
Q 046050          217 LRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIP  296 (779)
Q Consensus       217 l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~  296 (779)
                      +.+.+|..+ +++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++                
T Consensus       224 l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~----------------  285 (968)
T PLN00113        224 LSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQK----------------  285 (968)
T ss_pred             cCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccC----------------
Confidence            554444443 34455555555555554444444445555555555555444444444433 344                


Q ss_pred             cccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhC
Q 046050          297 CSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGN  376 (779)
Q Consensus       297 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  376 (779)
                                 |++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.
T Consensus       286 -----------L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        286 -----------LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             -----------cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence                       555555555555445555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEE
Q 046050          377 LSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLD  453 (779)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~  453 (779)
                      +++|+.|++++|++.+..|..++.+++|+.|++++|++.+..|..+. +++|+.|++++|.+++..+..+...  |+.|+
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            55555555555555555555555555555555555555555554443 5555666666666555555555444  77788


Q ss_pred             ccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCC
Q 046050          454 LSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSE  533 (779)
Q Consensus       454 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~  533 (779)
                      +++|.+++.++..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++.+|..+       +          
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~-------~----------  496 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL-------G----------  496 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh-------h----------
Confidence            88888888888888889999999999999998888765 45899999999999998888766       1          


Q ss_pred             CCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCc
Q 046050          534 GNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNN  613 (779)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~  613 (779)
                                                                .++.|+.|++++|++++.+|..+..+++|+.|+|++|.
T Consensus       497 ------------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        497 ------------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             ------------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                                                      15678999999999999999999999999999999999


Q ss_pred             CCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          614 LMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       614 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +++.+|..|.++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|.. +++.++...++.||+.+|+.+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999985 889999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.4e-59  Score=563.04  Aligned_cols=518  Identities=33%  Similarity=0.483  Sum_probs=475.5

Q ss_pred             CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcE
Q 046050           81 LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK  160 (779)
Q Consensus        81 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  160 (779)
                      ..+++.|+|++|.+++..+..+..+++|++|+|++|+++|.+|...+..+++|++|++++|.+++.+|..          
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----------  137 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----------  137 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----------
Confidence            4579999999999999999999999999999999999998999866778999999999999998765521          


Q ss_pred             EECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050          161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN  240 (779)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n  240 (779)
                                        .+.+|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+ .++++|++|++++|
T Consensus       138 ------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n  198 (968)
T PLN00113        138 ------------------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASN  198 (968)
T ss_pred             ------------------ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCC
Confidence                              23378888888888888899999999999999999999988888875 78999999999999


Q ss_pred             cccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCc
Q 046050          241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG  320 (779)
Q Consensus       241 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  320 (779)
                      .+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.   ++++|+.|++++|.+.+
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLG---NLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHh---CCCCCCEEECcCCeeec
Confidence            999888999999999999999999999889988876 88999999999999988887763   34489999999999999


Q ss_pred             cccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcC
Q 046050          321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK  400 (779)
Q Consensus       321 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  400 (779)
                      ..|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEE
Q 046050          401 LNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLI  477 (779)
Q Consensus       401 l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  477 (779)
                      +++|+.|++++|++++..|..+. ...|+.|++++|.+.+..+..+..+  |+.|++++|++++..|..+..+++|+.|+
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            99999999999999988887766 7889999999999999988888766  99999999999999999999999999999


Q ss_pred             ccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcc
Q 046050          478 LANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRK  557 (779)
Q Consensus       478 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (779)
                      +++|++++.+|..+..+++|+.|++++|++.+.+|..+.                                         
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----------------------------------------  473 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----------------------------------------  473 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-----------------------------------------
Confidence            999999999999999999999999999999987776440                                         


Q ss_pred             cceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCc
Q 046050          558 EESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                                         .+.|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.+.++++|++|+|++|+
T Consensus       474 -------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        474 -------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             -------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                               2568899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          638 LQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       638 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +++.+|..+..+++|+.|++++|+++|.+|..+..+..++.+.+++|+..+..|
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999988889999999999999887554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-41  Score=339.72  Aligned_cols=371  Identities=24%  Similarity=0.276  Sum_probs=248.2

Q ss_pred             cEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEE
Q 046050          257 TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQ  336 (779)
Q Consensus       257 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  336 (779)
                      ++||+++|++. .+....+..+|+|+.+++.+|.++ .+|...+..+   +|+.|+|.+|.|+....+.+..++.|+.||
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg---hl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG---HLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hccccccccc---ceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            34555555554 333333333555555555555554 3443332222   455555655555555555555666666666


Q ss_pred             ccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcc
Q 046050          337 LDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISG  416 (779)
Q Consensus       337 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  416 (779)
                      |+.|.|+...-..|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            66666664333455555666666666666666556666666666666666666665555666666666666666666653


Q ss_pred             cCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccC
Q 046050          417 SLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL  493 (779)
Q Consensus       417 ~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  493 (779)
                      ..--.|. +++|+.|.+..|.+.....+.|..+  +++|+|+.|++...-..|+-+++.|+.|+|++|.|..+.++.+..
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            3233343 6666666666666666666666655  777777777777666777778888888888888888777777777


Q ss_pred             CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeec
Q 046050          494 LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ  573 (779)
Q Consensus       494 l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (779)
                      .++|++|||++|+++ .+++..+                                                         
T Consensus       316 tqkL~~LdLs~N~i~-~l~~~sf---------------------------------------------------------  337 (873)
T KOG4194|consen  316 TQKLKELDLSSNRIT-RLDEGSF---------------------------------------------------------  337 (873)
T ss_pred             cccceeEeccccccc-cCChhHH---------------------------------------------------------
Confidence            888888888888887 3433321                                                         


Q ss_pred             ccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCch---hhhCCCCCCEEECCCCcCcCCCchhhhhcc
Q 046050          574 GRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS---TFSHLSQIESLDLSYNMLQGKIPTQLVELY  650 (779)
Q Consensus       574 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  650 (779)
                       ..+..|++|+|++|.++......|..+++|++|||++|.++..+.+   .|.+|++|+.|+|.+|++..+...+|.+++
T Consensus       338 -~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~  416 (873)
T KOG4194|consen  338 -RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE  416 (873)
T ss_pred             -HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc
Confidence             1256777888888888766677788888888888888888766653   477788888888888888866667888888


Q ss_pred             cCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          651 ALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       651 ~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      +|+.|||.+|.+...-|.+|.++ .++++-+..-..+|+|.+
T Consensus       417 ~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  417 ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             ccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            88888888888887778877777 777777777778888865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7e-44  Score=347.21  Aligned_cols=493  Identities=25%  Similarity=0.368  Sum_probs=323.3

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      -++.+++++|.+....+  ++.++..|.+|++++|+++ ..|.+++.+..++.|+.++|+++ .+|+ .++.+..|+.++
T Consensus        46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~  120 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLD  120 (565)
T ss_pred             chhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhh
Confidence            34444555554432211  3444455555555555544 34444555555555555555554 4444 444444455555


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL  217 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l  217 (779)
                      .++|.+.                                                   ..|+.++.+..++.++..+|++
T Consensus       121 ~s~n~~~---------------------------------------------------el~~~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen  121 CSSNELK---------------------------------------------------ELPDSIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             cccccee---------------------------------------------------ecCchHHHHhhhhhhhcccccc
Confidence            4444433                                                   3344455555566666666666


Q ss_pred             CCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCc
Q 046050          218 RGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC  297 (779)
Q Consensus       218 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  297 (779)
                      + ..|..+ ..+.++..+++.+|++....+..+. ++.|+++|...|-++ .+|+.++. +.+|..|++.+|++. ..| 
T Consensus       150 ~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-  222 (565)
T KOG0472|consen  150 S-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-  222 (565)
T ss_pred             c-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-
Confidence            6 555554 3555666666666666654444333 666777777777666 67777665 667777777777765 333 


Q ss_pred             ccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCC
Q 046050          298 SLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNL  377 (779)
Q Consensus       298 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  377 (779)
                      .   +.+|..|+++.++.|.+.-.......+++++..||+++|++. ..|+.+.-+.+|++||+++|.|+ ..|..++++
T Consensus       223 e---f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  223 E---FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             C---CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            2   345567777777777777333333447888888888888888 67888888888888888888888 567778888


Q ss_pred             CCCceEEccCCCCCCCcchhhcCCCC---CCEE-------EccCc---------cCcccCCcCcCCCcccEEEccCCcCc
Q 046050          378 SNLVDIIMPNNHLEGPIPANLCKLNF---LTVL-------DLEVN---------NISGSLPSCFSSWLLTQVHLSRNKIE  438 (779)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L-------~L~~n---------~l~~~~~~~~~~~~L~~L~l~~n~l~  438 (779)
                       .|+.|-+.+|.+.. +...+-+.+.   |++|       -++..         ...+..|.....-+.+.|++++-+++
T Consensus       298 -hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             -eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence             88888888888763 2222211110   1111       01111         01122333333556888888888888


Q ss_pred             ccchhhHhhc----ceEEEccCccccCcCchhhhcCCCCcE-EEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCc
Q 046050          439 GQLEDVFGDI----LVTLDLSYNRFSGRIPNWIDKLSHLSY-LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS  513 (779)
Q Consensus       439 ~~~~~~~~~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  513 (779)
                      ..+...|...    .+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+- .+|.
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcch
Confidence            8888777644    788899999988 67777766666554 44555555 488888999999999999988886 7887


Q ss_pred             hhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC
Q 046050          514 CLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE  593 (779)
Q Consensus       514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  593 (779)
                      .++       .                                                    +..|+.||+|.|+|. .
T Consensus       453 e~~-------~----------------------------------------------------lv~Lq~LnlS~NrFr-~  472 (565)
T KOG0472|consen  453 EMG-------S----------------------------------------------------LVRLQTLNLSFNRFR-M  472 (565)
T ss_pred             hhh-------h----------------------------------------------------hhhhheecccccccc-c
Confidence            762       2                                                    345888999999988 8


Q ss_pred             CCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC
Q 046050          594 IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF  673 (779)
Q Consensus       594 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  673 (779)
                      +|..+..+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|+++||+++ ..+...---
T Consensus       473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmk  550 (565)
T KOG0472|consen  473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMK  550 (565)
T ss_pred             chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhcc
Confidence            8988888888998888999999777888999999999999999998 78889999999999999999998 333322222


Q ss_pred             CCCCCCcccCCC
Q 046050          674 ATFTENSYDGNS  685 (779)
Q Consensus       674 ~~l~~~~~~~N~  685 (779)
                      .+...++|.+++
T Consensus       551 gT~aiL~ylrdr  562 (565)
T KOG0472|consen  551 GTAAILSYLRDR  562 (565)
T ss_pred             ChHHHHHHhccc
Confidence            344445565554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-41  Score=330.09  Aligned_cols=511  Identities=23%  Similarity=0.310  Sum_probs=372.4

Q ss_pred             CCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCC
Q 046050           30 LNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLR  109 (779)
Q Consensus        30 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  109 (779)
                      +.-..++.+.+++|.+.. .-+.+..+..+.+|++++|++. ..|+ +++++..++.|+.++|+++ ++|+.++.+.+|+
T Consensus        42 W~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            345578889999998874 4455788899999999999986 4553 7999999999999999998 7899999999999


Q ss_pred             EEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECC
Q 046050          110 ILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS  189 (779)
Q Consensus       110 ~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~  189 (779)
                      .|+.++|.+. ++++ .++.+-.|..++..+|+++. .| ..+                         ..+.++..+++.
T Consensus       118 ~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s-lp-~~~-------------------------~~~~~l~~l~~~  168 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS-LP-EDM-------------------------VNLSKLSKLDLE  168 (565)
T ss_pred             hhhcccccee-ecCc-hHHHHhhhhhhhcccccccc-Cc-hHH-------------------------HHHHHHHHhhcc
Confidence            9999999999 8888 78889999999999999872 23 122                         223356666677


Q ss_pred             CCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcC
Q 046050          190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGH  269 (779)
Q Consensus       190 ~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  269 (779)
                      +|++....|.... ++.|++||...|-++ .+|..+ +.+.+|+.|++..|++... | .|.++..|+++.++.|+|. .
T Consensus       169 ~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~  242 (565)
T KOG0472|consen  169 GNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIE-M  242 (565)
T ss_pred             ccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHH-h
Confidence            7776644444444 888999999988887 888876 7888999999999998764 3 7888999999999999998 8


Q ss_pred             CchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCcc
Q 046050          270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEN  349 (779)
Q Consensus       270 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  349 (779)
                      +|+.....++++..||+..|+++ ..|..+-...   +|..||+|+|.++ ..|..++++ .|+.|.+.+|.+.. +...
T Consensus       243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr---sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~  315 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR---SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRRE  315 (565)
T ss_pred             hHHHHhcccccceeeeccccccc-cCchHHHHhh---hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHH
Confidence            89888877888888888888887 5555553222   5777777777776 445566666 67777777776652 2221


Q ss_pred             ccCCCC---CCEEEccCCccCCCcchhhhCCCCCceEEccCC-CCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCC
Q 046050          350 LLNCSL---LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN-HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW  425 (779)
Q Consensus       350 ~~~l~~---L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  425 (779)
                      +-....   |++|.=   .+....+   ..   =+.=..+.- ...+.. .......+.+.|++++-+++.++.++|...
T Consensus       316 ii~~gT~~vLKyLrs---~~~~dgl---S~---se~~~e~~~t~~~~~~-~~~~~~i~tkiL~~s~~qlt~VPdEVfea~  385 (565)
T KOG0472|consen  316 IISKGTQEVLKYLRS---KIKDDGL---SQ---SEGGTETAMTLPSESF-PDIYAIITTKILDVSDKQLTLVPDEVFEAA  385 (565)
T ss_pred             HHcccHHHHHHHHHH---hhccCCC---CC---CcccccccCCCCCCcc-cchhhhhhhhhhcccccccccCCHHHHHHh
Confidence            111111   111110   1110000   00   000000000 001111 122346678889999999987777777643


Q ss_pred             c---ccEEEccCCcCcccchhhHh--hcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEE
Q 046050          426 L---LTQVHLSRNKIEGQLEDVFG--DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLI  500 (779)
Q Consensus       426 ~---L~~L~l~~n~l~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  500 (779)
                      .   ...++++.|++...+.....  ...+.+++++|.+. .+|..+..+++|..|+|++|.+. .+|..++.+..|+.|
T Consensus       386 ~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L  463 (565)
T KOG0472|consen  386 KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL  463 (565)
T ss_pred             hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence            3   88899999999877655332  22777888888887 78888999999999999999988 788889999999999


Q ss_pred             EccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeeccccccee
Q 046050          501 DLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIM  580 (779)
Q Consensus       501 ~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  580 (779)
                      |++.|+|. .+|.+.+.                                                           +..+
T Consensus       464 nlS~NrFr-~lP~~~y~-----------------------------------------------------------lq~l  483 (565)
T KOG0472|consen  464 NLSFNRFR-MLPECLYE-----------------------------------------------------------LQTL  483 (565)
T ss_pred             cccccccc-cchHHHhh-----------------------------------------------------------HHHH
Confidence            99999998 78888732                                                           3445


Q ss_pred             eEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          581 FGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       581 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      +.+-.++|++....|..+.++.+|..|||.+|.+. .+|+.++++++|++|++++|++. ..++.+-.......+..-++
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence            56666779999666667999999999999999998 89999999999999999999998 45444333333333333333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=330.49  Aligned_cols=372  Identities=23%  Similarity=0.245  Sum_probs=204.7

Q ss_pred             CCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEc
Q 046050          207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI  286 (779)
Q Consensus       207 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l  286 (779)
                      -+.||+++|++. .+.-.+|.++++|+++++.+|.++.+ |..-....+|+.|+|.+|.|+ .+..+-.+.+|.|++|||
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            345666666665 44444445666666666666665542 333333344666666666665 444443333556666666


Q ss_pred             cCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCcc
Q 046050          287 SRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI  366 (779)
Q Consensus       287 ~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  366 (779)
                      +.|.|+......+..   -.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|
T Consensus       157 SrN~is~i~~~sfp~---~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPA---KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhchhhcccCCCCCC---CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            666555322222211   01455555555555544444455555555555555555533334444455555555555555


Q ss_pred             CCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHh
Q 046050          367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG  446 (779)
Q Consensus       367 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  446 (779)
                      .-.---.|.++++|+.|.+..|.+.....+.|..+.++++|+|+.|+++                       .....++.
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-----------------------~vn~g~lf  290 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-----------------------AVNEGWLF  290 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-----------------------hhhccccc
Confidence            4222334555555555555555555444555555555555555555554                       44443333


Q ss_pred             hc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCC
Q 046050          447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGN  524 (779)
Q Consensus       447 ~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~  524 (779)
                      +.  |+.|++++|.|..+-++.+.-+++|++|+|++|+|+...++.|..+..|++|.|++|+++ .+.+..|.       
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~-------  362 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFV-------  362 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHH-------
Confidence            33  444555555554444444445555555555555555555555555555555555555554 22221111       


Q ss_pred             CCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCC---CccccCc
Q 046050          525 YDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI---PFQIGYL  601 (779)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~---p~~l~~l  601 (779)
                                                                         .+++|++|||++|.++..+   ...|.++
T Consensus       363 ---------------------------------------------------~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  363 ---------------------------------------------------GLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             ---------------------------------------------------HhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence                                                               1345555555555554433   2346778


Q ss_pred             ccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050          602 NMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       602 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      +.|+.|+|.+|++..+...+|.+++.|+.|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            888888888888886666788888888888888888888888888887 78888777766666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=332.51  Aligned_cols=483  Identities=25%  Similarity=0.307  Sum_probs=275.0

Q ss_pred             ccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCC
Q 046050           35 LEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIA  114 (779)
Q Consensus        35 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  114 (779)
                      ++.|++..|.+-..+.+.+.+.-+|+.|++++|.+ +..|. .++.+.+|+.|+++.|.|. ..|.+..++.+|++|.|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            44444444443322233333333455555555544 23332 3444455555555555444 334444445555555555


Q ss_pred             CCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCC
Q 046050          115 SNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCD  194 (779)
Q Consensus       115 ~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~  194 (779)
                      +|++. .+|. .+..+.+|++||+++|.+.                                                  
T Consensus       100 ~n~l~-~lP~-~~~~lknl~~LdlS~N~f~--------------------------------------------------  127 (1081)
T KOG0618|consen  100 NNRLQ-SLPA-SISELKNLQYLDLSFNHFG--------------------------------------------------  127 (1081)
T ss_pred             cchhh-cCch-hHHhhhcccccccchhccC--------------------------------------------------
Confidence            55544 4444 4444444455544444432                                                  


Q ss_pred             CCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhh
Q 046050          195 FTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGI  274 (779)
Q Consensus       195 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~  274 (779)
                       .+|..+..+..+++++.++|.....++.      ..++.+++..|.+.+.++.....+..  .|||++|.+. ...  +
T Consensus       128 -~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--l  195 (1081)
T KOG0618|consen  128 -PIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--L  195 (1081)
T ss_pred             -CCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--h
Confidence             5666677777777888888722112221      22677777777777666666655555  6888888775 222  2


Q ss_pred             hhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCC
Q 046050          275 GAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCS  354 (779)
Q Consensus       275 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  354 (779)
                      .. +++|+.+....|++....-       .-++++.|+.++|.+....+.  ..-.+|++++++.|+++ .+|+++..+.
T Consensus       196 s~-~~~l~~l~c~rn~ls~l~~-------~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  196 SN-LANLEVLHCERNQLSELEI-------SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             hh-ccchhhhhhhhcccceEEe-------cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcc
Confidence            22 5677777777777652211       112677777777776622221  12346777777777776 4557777777


Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC--CCcccEEEc
Q 046050          355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS--SWLLTQVHL  432 (779)
Q Consensus       355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l  432 (779)
                      +|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|....+.+.|++|+|..|++...++..+.  ...+..+..
T Consensus       265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence            7777777777775 56666666677777777777776 5555666677777777777777644443333  223666666


Q ss_pred             cCCcCcccchhh--HhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          433 SRNKIEGQLEDV--FGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       433 ~~n~l~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                      +.|++...+...  ....|+.|.+.+|.++...-..+.+..+|+.|+|++|++.......+.+++.|+.|+||+|+++ .
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~  421 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T  421 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence            666665444211  1112666677777766665556666667777777777766555556666666677777777666 5


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                      +|.+...                                                           +..|++|...+|++
T Consensus       422 Lp~tva~-----------------------------------------------------------~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  422 LPDTVAN-----------------------------------------------------------LGRLHTLRAHSNQL  442 (1081)
T ss_pred             hhHHHHh-----------------------------------------------------------hhhhHHHhhcCCce
Confidence            5554411                                                           34556666666666


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccC-chhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTI-PSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      . ..| .+..++.|+.+|+|.|+++... |... .-++|++|||++|.-....-..|..+.++...++.-|
T Consensus       443 ~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  443 L-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             e-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            6 555 6666666666666666665332 2222 1256666666666643344445555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-37  Score=329.51  Aligned_cols=483  Identities=24%  Similarity=0.304  Sum_probs=390.5

Q ss_pred             EEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCC
Q 046050           37 VLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN  116 (779)
Q Consensus        37 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  116 (779)
                      .++.+++++. .+|..+..-..++.|+++.|.+. ..|.+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence            3567777776 44444444456999999999874 444556777888999999999998 67888899999999999999


Q ss_pred             cCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC
Q 046050          117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT  196 (779)
Q Consensus       117 ~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~  196 (779)
                      .|. .+|. ...++.+|++|.|.+|+++                                                   .
T Consensus        79 ~i~-~vp~-s~~~~~~l~~lnL~~n~l~---------------------------------------------------~  105 (1081)
T KOG0618|consen   79 YIR-SVPS-SCSNMRNLQYLNLKNNRLQ---------------------------------------------------S  105 (1081)
T ss_pred             hHh-hCch-hhhhhhcchhheeccchhh---------------------------------------------------c
Confidence            999 8887 7889999999999999875                                                   5


Q ss_pred             cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhh
Q 046050          197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGA  276 (779)
Q Consensus       197 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~  276 (779)
                      .|..+..+++|+.|++|.|.+. .+|..+ ..++.++.+..++|.....    ++... ++.+++..|.+.+.++.+...
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~  178 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYN  178 (1081)
T ss_pred             CchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhh
Confidence            6788888999999999999998 888876 5788899999999932222    22222 888999999988788777654


Q ss_pred             cCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCC
Q 046050          277 FLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLL  356 (779)
Q Consensus       277 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  356 (779)
                       +..  .|++.+|.+....      ...+..|+.+....|.+.....    ..++|+.|+.++|.++...+..  .-.+|
T Consensus       179 -l~~--~ldLr~N~~~~~d------ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p--~p~nl  243 (1081)
T KOG0618|consen  179 -LTH--QLDLRYNEMEVLD------LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP--VPLNL  243 (1081)
T ss_pred             -hhe--eeecccchhhhhh------hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc--ccccc
Confidence             323  6999999886111      1234488999999998874322    4678999999999998443332  23689


Q ss_pred             CEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCc
Q 046050          357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNK  436 (779)
Q Consensus       357 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~  436 (779)
                      +++++++|+++ .+|+|++.+.+|+.+...+|.+. .+|..+...++|+.|.+..|.+...+|..-...+|++|++..|+
T Consensus       244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            99999999999 56799999999999999999996 88888999999999999999999877776668999999999999


Q ss_pred             CcccchhhHhhc---ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCc
Q 046050          437 IEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS  513 (779)
Q Consensus       437 l~~~~~~~~~~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  513 (779)
                      +...++..+...   +..|..+.|++.......=...+.|+.|++.+|.++...-..+.+.+.|++|+|++|++. .+|+
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpa  400 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPA  400 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCH
Confidence            999888665544   778888888887433222234678999999999999877777899999999999999997 6776


Q ss_pred             hhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC
Q 046050          514 CLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE  593 (779)
Q Consensus       514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  593 (779)
                      ....                                                          .+..|++|+||+|+++ .
T Consensus       401 s~~~----------------------------------------------------------kle~LeeL~LSGNkL~-~  421 (1081)
T KOG0618|consen  401 SKLR----------------------------------------------------------KLEELEELNLSGNKLT-T  421 (1081)
T ss_pred             HHHh----------------------------------------------------------chHHhHHHhcccchhh-h
Confidence            5522                                                          1567899999999999 8


Q ss_pred             CCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC-chhhhhcccCcEEEccCCcC
Q 046050          594 IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI-PTQLVELYALAIFSVAHNNL  662 (779)
Q Consensus       594 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l  662 (779)
                      +|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+++... |.... -++|++||++||.-
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence            8999999999999999999998 677 7999999999999999998543 33322 27999999999984

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.5e-34  Score=290.36  Aligned_cols=362  Identities=25%  Similarity=0.342  Sum_probs=259.0

Q ss_pred             CCCCEEECcCCccc-ccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccc
Q 046050          230 KELETLLLANNSLS-GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL  308 (779)
Q Consensus       230 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  308 (779)
                      +-++-.++++|.++ +..|.....+++++.|.|...++. .+|+.+.. +.+|++|.+++|++... -   .-...++.|
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~v-h---GELs~Lp~L   80 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISV-H---GELSDLPRL   80 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhh-h---hhhccchhh
Confidence            34455566666666 345666667777778888777777 78888877 67888888888877622 1   222344578


Q ss_pred             cEEEccCCcCC-ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050          309 QILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN  387 (779)
Q Consensus       309 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  387 (779)
                      +.+.+..|+++ .-+|..+..+..|+.||+++|++. ..|..+...+++-.|+|++|+|..+....|.+++.|-.|+|++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            88888888775 245667778899999999999998 7888888889999999999999865556778899999999999


Q ss_pred             CCCCCCcchhhcCCCCCCEEEccCccCcccCC-cCcCCCcccEEEccCCcCc-ccchhhHhhc--ceEEEccCccccCcC
Q 046050          388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SCFSSWLLTQVHLSRNKIE-GQLEDVFGDI--LVTLDLSYNRFSGRI  463 (779)
Q Consensus       388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~--L~~L~L~~n~l~~~~  463 (779)
                      |++. .+|..+..+..|++|+|++|.+...-- ..-.+.+|+.|.+++.+-+ .-.|..+..+  |..+|+|.|.+. ..
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            9998 677778889999999999998763221 1222566777777776433 1222333333  777777777777 66


Q ss_pred             chhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccc
Q 046050          464 PNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAA  543 (779)
Q Consensus       464 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  543 (779)
                      |+.+-++++|+.|+|++|+|+ .+........+|++|++|.|+++ .+|.++.+                          
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------  289 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------  289 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh--------------------------
Confidence            777777777777777777776 33444455566777777777776 66766621                          


Q ss_pred             ccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC-CCCccccCcccCcEEEcCCCcCCccCchhh
Q 046050          544 GEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG-EIPFQIGYLNMIRALNLSHNNLMGTIPSTF  622 (779)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  622 (779)
                                                       ++.|+.|.+.+|+++- -+|..++.+.+|+++..++|.+. ..|+.+
T Consensus       290 ---------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl  335 (1255)
T KOG0444|consen  290 ---------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL  335 (1255)
T ss_pred             ---------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence                                             4667777777777652 46777777777777777777776 677777


Q ss_pred             hCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc
Q 046050          623 SHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS  663 (779)
Q Consensus       623 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  663 (779)
                      ..+..|+.|.|++|++. .+|+++.-++.|++||+..|+=-
T Consensus       336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            77777777777777776 67777777777777777777543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.8e-33  Score=284.65  Aligned_cols=361  Identities=27%  Similarity=0.322  Sum_probs=161.2

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      -+|-+|+++|.++|..-+.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+.. .+..++.|+.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhHHHh
Confidence            34444555555543322234444555555555544444 44555555555555555555544 3333 344444555555


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL  217 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l  217 (779)
                      +..|++..                                                 .-+|..+..+..|+.||||+|++
T Consensus        85 ~R~N~LKn-------------------------------------------------sGiP~diF~l~dLt~lDLShNqL  115 (1255)
T KOG0444|consen   85 VRDNNLKN-------------------------------------------------SGIPTDIFRLKDLTILDLSHNQL  115 (1255)
T ss_pred             hhcccccc-------------------------------------------------CCCCchhcccccceeeecchhhh
Confidence            55444431                                                 11333333444444444444444


Q ss_pred             CCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCc
Q 046050          218 RGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC  297 (779)
Q Consensus       218 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  297 (779)
                      + +.|..+ +...++-.|+|++|+|..+...-|-++..|-.||||+|++. .+|+.+.. +..|++|.|++|++.-.   
T Consensus       116 ~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hf---  188 (1255)
T KOG0444|consen  116 R-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHF---  188 (1255)
T ss_pred             h-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHH---
Confidence            4 444433 33334444444444444333333334444444444444444 44444443 34445555554443310   


Q ss_pred             ccccccCCccccEEEccCCcCC-ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhC
Q 046050          298 SLHMTMGCFSLQILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGN  376 (779)
Q Consensus       298 ~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  376 (779)
                      .+.....+.+|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+|+ .+....+.
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~  266 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE  266 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence            0011111223444444443221 234444555555555555555555 45555555555555555555555 22233333


Q ss_pred             CCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc--ccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEE
Q 046050          377 LSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS--GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTL  452 (779)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L  452 (779)
                      -.+|++|+++.|+++ .+|.+++.+++|+.|.+.+|+++  |++.+.-.+..|+.+..++|.+.-. |..++.+  |+.|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-PEglcRC~kL~kL  344 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-PEGLCRCVKLQKL  344 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-chhhhhhHHHHHh
Confidence            345555555555555 55555555555555555555543  2222222233344444444333311 1222222  3444


Q ss_pred             EccCccccCcCchhhhcCCCCcEEEccCCc
Q 046050          453 DLSYNRFSGRIPNWIDKLSHLSYLILANNN  482 (779)
Q Consensus       453 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  482 (779)
                      .|+.|++. .+|+.+.-++.|+.|++..|.
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCCc
Confidence            44444443 345555555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-27  Score=234.16  Aligned_cols=276  Identities=21%  Similarity=0.152  Sum_probs=147.6

Q ss_pred             CCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccC-CcCCcccCcccccccCCcccc
Q 046050          231 ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR-NVLNGSIPCSLHMTMGCFSLQ  309 (779)
Q Consensus       231 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~  309 (779)
                      .-++++|..|+|+.+.+.+|+.+++|+.||||+|.|+ .|.+..|..++++.+|.+.+ |+|+......|   .++.+++
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F---~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAF---GGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHh---hhHHHHH
Confidence            3444555555555555555555555555555555554 44444444444444444433 44442222222   2222455


Q ss_pred             EEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccC------------CCcchhhhCC
Q 046050          310 ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS------------GKIPKWLGNL  377 (779)
Q Consensus       310 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~~~~l  377 (779)
                      .|.+.-|++.....+.|..++++..|.+.+|.+...-...|..+..++.+.+..|.+-            ...|..++..
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            5555555555555556666666666666666665333335666666666666655521            1222233333


Q ss_pred             CCCceEEccCCCCCCCcchhhcCC-CCCCEEEccCccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhc--ceEE
Q 046050          378 SNLVDIIMPNNHLEGPIPANLCKL-NFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTL  452 (779)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L  452 (779)
                      ....-..+.+.++..+.+..|... ..+..--.+.+...++.| .+|. +++|++|++++|+++.+.+.+|...  +++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            333333444444443333333211 111111111222222333 2343 6667777777777777776666655  7777


Q ss_pred             EccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          453 DLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       453 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                      .|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|.+-..
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            7777777766666777778888888888888877778888888888888777776543

>PLN03210 Resistant to P

Probab=99.91  E-value=1.1e-22  Score=246.03  Aligned_cols=338  Identities=20%  Similarity=0.229  Sum_probs=159.3

Q ss_pred             CCCCCCCccEEEccCCC------CCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccc
Q 046050          249 PVNPLKQLTTIDVSKNF------IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI  322 (779)
Q Consensus       249 ~l~~l~~L~~L~Ls~n~------l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  322 (779)
                      +|..+++|+.|.+..+.      +...+|.++....++|+.|.+.++.+. .+|..+..    .+|++|++++|.+. .+
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~----~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRP----ENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCc----cCCcEEECcCcccc-cc
Confidence            34445555555554332      111234443332234555555555543 33433322    14555555555554 23


Q ss_pred             cccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCC
Q 046050          323 FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLN  402 (779)
Q Consensus       323 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  402 (779)
                      +..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            34444555555555555443323332 4455555555555554444555555555555555555554333444433 455


Q ss_pred             CCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCcccc-------CcCchhhhcCCCCcE
Q 046050          403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFS-------GRIPNWIDKLSHLSY  475 (779)
Q Consensus       403 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~  475 (779)
                      +|+.|++++|...+.+|..  ..+|+.|++++|.+...+...-...|+.|++.++...       ...+......++|+.
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            5555555555433333321  2345555555555544332221112444444432211       111111222345666


Q ss_pred             EEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 046050          476 LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTM  555 (779)
Q Consensus       476 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      |++++|...+.+|..+.++++|+.|++++|...+.+|...                                        
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------------------------------  822 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----------------------------------------  822 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC----------------------------------------
Confidence            6666665555556666666666666666554333444322                                        


Q ss_pred             cccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCC
Q 046050          556 RKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSY  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  635 (779)
                                          .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++
T Consensus       823 --------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        823 --------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             --------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence                                0244555555554433333322   244555555555555 4555555555555555555


Q ss_pred             CcCcCCCchhhhhcccCcEEEccCC
Q 046050          636 NMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       636 N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      |+--..+|..+..+++|+.+++++|
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCC
Confidence            3222234444555555555555555

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=9.2e-26  Score=220.84  Aligned_cols=385  Identities=19%  Similarity=0.149  Sum_probs=230.0

Q ss_pred             CCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEccc-ccccccCCcccccCCCCCcEE
Q 046050           83 HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN-NQFQIPISFEPFFNHSKLKKF  161 (779)
Q Consensus        83 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L  161 (779)
                      .-.+++|..|.|+.+.+++|+.+++|+.||||+|+|+ .|.+++|.+++.|..|-+.+ |+|+                 
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-----------------  129 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-----------------  129 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-----------------
Confidence            4456777777777767777777777777777777777 66666777777766665544 6665                 


Q ss_pred             ECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCc
Q 046050          162 YGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS  241 (779)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~  241 (779)
                               .++...|.++..++.|.+.-|++.-...+.|..++++..|.+.+|.+. .++...+..+..++.+.+..|.
T Consensus       130 ---------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  130 ---------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ---------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence                     344455555556667777777777677788888888888888888887 7777666777788888887776


Q ss_pred             cc------------ccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEE---EccCCcCCcccCcccccccCCc
Q 046050          242 LS------------GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF---NISRNVLNGSIPCSLHMTMGCF  306 (779)
Q Consensus       242 ~~------------~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~~~~~~  306 (779)
                      +.            ...+..++...-.....+.+.++. .+++.-+.  ..++.+   -.+.+...+.-|.  ..+.+++
T Consensus       200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~--~cf~~L~  274 (498)
T KOG4237|consen  200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFL--CSLESLPSRLSSEDFPDSICPA--KCFKKLP  274 (498)
T ss_pred             cccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhh--hhHHhHHHhhccccCcCCcChH--HHHhhcc
Confidence            22            122233333333333444444444 33333221  112222   1111211112221  2244555


Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      +|++|++++|+++++-+.+|.+...+++|.+..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            77777777777777667777777777777777777765555667777777777777777777777777777777777776


Q ss_pred             CCCCCCC-----cchhh-----------cCCCCCCEEEccCccCccc---CCcCcC----------CCcccE-EEccCCc
Q 046050          387 NNHLEGP-----IPANL-----------CKLNFLTVLDLEVNNISGS---LPSCFS----------SWLLTQ-VHLSRNK  436 (779)
Q Consensus       387 ~n~l~~~-----~~~~~-----------~~l~~L~~L~L~~n~l~~~---~~~~~~----------~~~L~~-L~l~~n~  436 (779)
                      .|.+.-.     ..+++           +....++.+++++..+...   .|+...          ++-+.+ ...++..
T Consensus       355 ~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~  434 (498)
T KOG4237|consen  355 SNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL  434 (498)
T ss_pred             cCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccc
Confidence            6655311     00111           1122455566655544311   111110          111221 2233333


Q ss_pred             CcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050          437 IEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN  505 (779)
Q Consensus       437 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  505 (779)
                      ++..++ .++.-.+++++.+|.++ .+|..  .+.+| .+++++|++.......|.++++|.+|-|++|
T Consensus       435 lk~lp~-~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LKLLPR-GIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcCC-CCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            332222 22222567788888887 45554  55667 8888888888766777888888888888876

>PLN03210 Resistant to P

Probab=99.89  E-value=7.6e-22  Score=238.78  Aligned_cols=340  Identities=20%  Similarity=0.177  Sum_probs=250.4

Q ss_pred             CchhhhhcCCCCCEEECcCCc------ccccCCCCCCCC-CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCc
Q 046050          221 FPNWLLENNKELETLLLANNS------LSGFFQMPVNPL-KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG  293 (779)
Q Consensus       221 ~~~~~~~~~~~L~~L~L~~n~------~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~  293 (779)
                      +....|.++++|+.|.+..+.      +....|..+..+ .+|+.|++.++.+. .+|..+.  ..+|+.|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence            344446778888888776543      222344555554 35888888888877 7777653  468888888888776 


Q ss_pred             ccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchh
Q 046050          294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKW  373 (779)
Q Consensus       294 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  373 (779)
                      .++..+   ..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus       625 ~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        625 KLWDGV---HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccc---ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            334333   3445788888887754445553 667888888888888766678888888888888888887655566665


Q ss_pred             hhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCc-------ccchhhH-
Q 046050          374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE-------GQLEDVF-  445 (779)
Q Consensus       374 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~-  445 (779)
                      + ++++|+.|++++|...+..|..   .++|+.|++++|.+. .+|..+.+++|+.|.+.++...       ...+..+ 
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhh
Confidence            5 6888888888888665555542   467888889888886 4555556777888888764321       1111111 


Q ss_pred             -hhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCC
Q 046050          446 -GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGN  524 (779)
Q Consensus       446 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~  524 (779)
                       ...|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..          
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------  844 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------  844 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------
Confidence             2339999999998888899999999999999999987555677665 7899999999998654344321          


Q ss_pred             CCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccC
Q 046050          525 YDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMI  604 (779)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  604 (779)
                                                                          ..+++.|+|++|.++ .+|..+..+++|
T Consensus       845 ----------------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L  871 (1153)
T PLN03210        845 ----------------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNL  871 (1153)
T ss_pred             ----------------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence                                                                256889999999999 789999999999


Q ss_pred             cEEEcCCCcCCccCchhhhCCCCCCEEECCCCc
Q 046050          605 RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       605 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                      +.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999955434688888999999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=5.9e-22  Score=221.63  Aligned_cols=82  Identities=27%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             eeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEcc
Q 046050          579 IMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVA  658 (779)
Q Consensus       579 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  658 (779)
                      .|+.|++++|+|+ .+|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|+++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            3556666666666 34432   245666677777766 34543   235666777777766 566666667777777777


Q ss_pred             CCcCcccCCCC
Q 046050          659 HNNLSGKVPDR  669 (779)
Q Consensus       659 ~N~l~~~~p~~  669 (779)
                      +|+|++.+|..
T Consensus       454 ~N~Ls~~~~~~  464 (788)
T PRK15387        454 GNPLSERTLQA  464 (788)
T ss_pred             CCCCCchHHHH
Confidence            77776666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=7e-22  Score=221.04  Aligned_cols=267  Identities=23%  Similarity=0.296  Sum_probs=159.5

Q ss_pred             CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCE
Q 046050          255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVT  334 (779)
Q Consensus       255 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  334 (779)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|..      .++|++|++++|+++. +|.   ..++|+.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l------p~~Lk~LdLs~N~Lts-LP~---lp~sL~~  266 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL------PPELRTLEVSGNQLTS-LPV---LPPGLLE  266 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC------CCCCcEEEecCCccCc-ccC---cccccce
Confidence            3455667777666 6666543   356666666666652 3321      1245555555555542 222   1234555


Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccC
Q 046050          335 LQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI  414 (779)
Q Consensus       335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  414 (779)
                      |++++|.+. .+|..+   ++|+.|++++|+++. +|.                           ..++|+.|++++|++
T Consensus       267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---------------------------~p~~L~~LdLS~N~L  314 (788)
T PRK15387        267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---------------------------LPPGLQELSVSDNQL  314 (788)
T ss_pred             eeccCCchh-hhhhch---hhcCEEECcCCcccc-ccc---------------------------cccccceeECCCCcc
Confidence            555555544 223211   234445555554442 222                           123455555555555


Q ss_pred             cccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCC
Q 046050          415 SGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLL  494 (779)
Q Consensus       415 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  494 (779)
                      ++. |..  ...|+.|++++|.+++++.  +...|+.|++++|++++ +|..   .++|+.|++++|++++ +|..   .
T Consensus       315 ~~L-p~l--p~~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        315 ASL-PAL--PSELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             ccC-CCC--cccccccccccCccccccc--cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence            432 211  1234555555555554332  22337777777777774 4432   3567788888888874 4543   3


Q ss_pred             CCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecc
Q 046050          495 KQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQG  574 (779)
Q Consensus       495 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (779)
                      .+|+.|++++|+++ .+|..                                                            
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l------------------------------------------------------------  400 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL------------------------------------------------------------  400 (788)
T ss_pred             cccceEEecCCccc-CCCCc------------------------------------------------------------
Confidence            56888999999887 34432                                                            


Q ss_pred             cccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc
Q 046050          575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL  649 (779)
Q Consensus       575 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  649 (779)
                        ++.|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus       401 --~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        401 --PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             --ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence              245778899999988 46654   356788999999998 789889999999999999999998888877554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.9e-19  Score=203.23  Aligned_cols=164  Identities=27%  Similarity=0.429  Sum_probs=79.5

Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      .|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4455555555554 3333322  34555555555554 2333332  24555555555555 3344332  345555555


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ  490 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  490 (779)
                      +|+++. +|..+ ..+|+.|++++|+++..+.. +...|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..
T Consensus       271 ~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~  343 (754)
T PRK15370        271 HNKISC-LPENL-PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPAS  343 (754)
T ss_pred             CCccCc-ccccc-CCCCcEEECCCCccccCccc-chhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChh
Confidence            555553 22221 13455555555555543321 22235566666666653 33322  2456666666666663 3443


Q ss_pred             ccCCCCCCEEEccCCcCcccCCc
Q 046050          491 LCLLKQLQLIDLSHNNLSGTIPS  513 (779)
Q Consensus       491 ~~~l~~L~~L~Ls~N~l~~~~p~  513 (779)
                      +.  ++|+.|++++|+++ .+|.
T Consensus       344 l~--~sL~~L~Ls~N~L~-~LP~  363 (754)
T PRK15370        344 LP--PELQVLDVSKNQIT-VLPE  363 (754)
T ss_pred             hc--CcccEEECCCCCCC-cCCh
Confidence            32  46666666666665 3443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.1e-19  Score=202.93  Aligned_cols=247  Identities=26%  Similarity=0.372  Sum_probs=189.7

Q ss_pred             CCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEc
Q 046050          330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDL  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  409 (779)
                      .+...|++++++++ .+|..+.  +.++.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35678889888888 5676554  57999999999999 4565553  58999999999998 5666553  57999999


Q ss_pred             cCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc
Q 046050          410 EVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV  489 (779)
Q Consensus       410 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  489 (779)
                      ++|.+.. +|..+ ..+|+.|++++|+++.++. .+...|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|.
T Consensus       249 s~N~L~~-LP~~l-~s~L~~L~Ls~N~L~~LP~-~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        249 SINRITE-LPERL-PSALQSLDLFHNKISCLPE-NLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             cCCccCc-CChhH-hCCCCEEECcCCccCcccc-ccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence            9999984 44433 3579999999999986543 344469999999999985 454432  478899999999984 454


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCce
Q 046050          490 QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTS  569 (779)
Q Consensus       490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (779)
                      .+  .++|+.|++++|.++ .+|..+                                                      
T Consensus       322 ~l--~~sL~~L~Ls~N~Lt-~LP~~l------------------------------------------------------  344 (754)
T PRK15370        322 TL--PPGLKTLEAGENALT-SLPASL------------------------------------------------------  344 (754)
T ss_pred             cc--cccceeccccCCccc-cCChhh------------------------------------------------------
Confidence            33  268999999999987 366544                                                      


Q ss_pred             eeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhh-
Q 046050          570 YYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVE-  648 (779)
Q Consensus       570 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  648 (779)
                             +++|+.|++++|+++ .+|..+.  +.|+.|+|++|+++ .+|..+.  .+|+.|++++|+++ .+|..+.. 
T Consensus       345 -------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        345 -------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF  410 (754)
T ss_pred             -------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence                   357889999999998 5776553  68999999999998 5666654  47999999999998 56655443 


Q ss_pred             ---cccCcEEEccCCcCc
Q 046050          649 ---LYALAIFSVAHNNLS  663 (779)
Q Consensus       649 ---l~~L~~L~ls~N~l~  663 (779)
                         ++.+..+++.+|+++
T Consensus       411 ~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        411 RGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhcCCCccEEEeeCCCcc
Confidence               478899999999987

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.7e-18  Score=182.61  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=34.7

Q ss_pred             ccCcEEEcCCCcCCc----cCchhhhCCCCCCEEECCCCcCcCC----Cchhhhhc-ccCcEEEccCCcC
Q 046050          602 NMIRALNLSHNNLMG----TIPSTFSHLSQIESLDLSYNMLQGK----IPTQLVEL-YALAIFSVAHNNL  662 (779)
Q Consensus       602 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  662 (779)
                      +.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    ....+... +.|+.+++.+|++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            566666666666651    2334455556677777777777643    23333333 5666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=4.8e-18  Score=179.09  Aligned_cols=204  Identities=23%  Similarity=0.235  Sum_probs=96.9

Q ss_pred             EEcccccccc-ccchhhcCCCCcCEEECCCCCCccc----CCcccccCCCCCcEEEccCccccc------ccChhccCCC
Q 046050           38 LILDGSALHI-RFLQSIAVLTSVKHLSMRNCYLYGT----SDFQGLCELVHLQELHIGYNNIGG------TLPWCLVNMT  106 (779)
Q Consensus        38 L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~  106 (779)
                      |+|.++.+++ .....+..+.+|++|+++++.+...    ++ ..+...++|++|+++++.+.+      .++..+.+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4455555542 2233444555566666666665321    11 123445556666666665541      2334455666


Q ss_pred             CCCEEeCCCCcCcccCCchhhcCCCC---CCEEEcccccccccCCc---ccccCCCCCcEEECcCCceeeecccCCCCCC
Q 046050          107 SLRILDIASNQITGNISSSPLRYLTS---LEELRVSNNQFQIPISF---EPFFNHSKLKKFYGQKNRLFVEIESHSLTPK  180 (779)
Q Consensus       107 ~L~~L~Ls~n~i~~~i~~~~~~~l~~---L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  180 (779)
                      +|+.|++++|.+.+..+. .+..+.+   |++|++++|++++....   ..+..+                        .
T Consensus        82 ~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~------------------------~  136 (319)
T cd00116          82 GLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL------------------------P  136 (319)
T ss_pred             ceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC------------------------C
Confidence            677777766666532222 3333333   66666666665421000   001111                        0


Q ss_pred             ccccEEECCCCcCCCC----cchhhhCCCCCCEEEccCCCCCCcCchhh---hhcCCCCCEEECcCCcccccC----CCC
Q 046050          181 FQLQNISLSGCRCDFT----FPRFLYYQHELRYVDLSHMNLRGEFPNWL---LENNKELETLLLANNSLSGFF----QMP  249 (779)
Q Consensus       181 ~~L~~L~L~~n~~~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~---~~~~~~L~~L~L~~n~~~~~~----~~~  249 (779)
                      .+|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+   +...++|++|++++|.+.+..    ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            2444444444444421    23344455566666666666653211111   123345666666666554221    122


Q ss_pred             CCCCCCccEEEccCCCCC
Q 046050          250 VNPLKQLTTIDVSKNFIQ  267 (779)
Q Consensus       250 l~~l~~L~~L~Ls~n~l~  267 (779)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            344555666666666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=4.3e-18  Score=148.12  Aligned_cols=89  Identities=30%  Similarity=0.406  Sum_probs=52.6

Q ss_pred             CCcCcCCCcccEEEccCCcCcccchhhHhhc-ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCC
Q 046050          418 LPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI-LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQ  496 (779)
Q Consensus       418 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  496 (779)
                      +++.|.+..++.|.+++|+++..+|..-.-. |+.|++++|+++ ..|..++.++.|+.|+++-|++. ..|..|+.++.
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            4445555556666666666665544322211 556666666665 45555666666666666666665 55666666666


Q ss_pred             CCEEEccCCcCc
Q 046050          497 LQLIDLSHNNLS  508 (779)
Q Consensus       497 L~~L~Ls~N~l~  508 (779)
                      |++|||++|++.
T Consensus       104 levldltynnl~  115 (264)
T KOG0617|consen  104 LEVLDLTYNNLN  115 (264)
T ss_pred             hhhhhccccccc
Confidence            666666666664

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=4.9e-15  Score=167.43  Aligned_cols=119  Identities=36%  Similarity=0.617  Sum_probs=108.7

Q ss_pred             eeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEcc
Q 046050          579 IMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVA  658 (779)
Q Consensus       579 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  658 (779)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCCc-CCCCCCCcccCCCCCCCCCCCCCCC
Q 046050          659 HNNLSGKVPDRVGQ-FATFTENSYDGNSLLCGQPLSESCY  697 (779)
Q Consensus       659 ~N~l~~~~p~~~~~-~~~l~~~~~~~N~~lc~~~l~~~c~  697 (779)
                      +|+++|.+|..++. +..+..+.+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999987654 2345667899999999987655674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=6.3e-17  Score=140.92  Aligned_cols=160  Identities=32%  Similarity=0.461  Sum_probs=101.7

Q ss_pred             CCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEE
Q 046050          328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVL  407 (779)
Q Consensus       328 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  407 (779)
                      ++.+++.|.+++|+++ .+|..+..+.+|+.|++++|+|. .+|..+..++.|+.|++.-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455566666666666 45555666666666666666666 45556666666666666666665 556666666666666


Q ss_pred             EccCccCcc-cCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcc
Q 046050          408 DLEVNNISG-SLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG  485 (779)
Q Consensus       408 ~L~~n~l~~-~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  485 (779)
                      |+.+|++.. ..|+.|. +..                      |+.|.+++|.+. .+|..++++++|+.|.+++|.+. 
T Consensus       108 dltynnl~e~~lpgnff~m~t----------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-  163 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTT----------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-  163 (264)
T ss_pred             hccccccccccCCcchhHHHH----------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence            666665542 2333222 333                      455555555555 66677777888888888888776 


Q ss_pred             cCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050          486 EVPVQLCLLKQLQLIDLSHNNLSGTIPSCL  515 (779)
Q Consensus       486 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  515 (779)
                      ..|..++.+..|+.|++.+|+++ .+|+.+
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            56777777778888888888877 666666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=1.5e-13  Score=141.89  Aligned_cols=173  Identities=31%  Similarity=0.482  Sum_probs=139.5

Q ss_pred             CCcccEEEccCCcCcccchhhHh-hcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEc
Q 046050          424 SWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDL  502 (779)
Q Consensus       424 ~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  502 (779)
                      +..-...|++.|++..++...-. ..|+.+.++.|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.++ |+.|-+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            33445667777777766554332 22888888888887 67888999999999999999998 7777888876 899999


Q ss_pred             cCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeE
Q 046050          503 SHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFG  582 (779)
Q Consensus       503 s~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  582 (779)
                      ++|+++ .+|..+       |                                                    ....|..
T Consensus       151 sNNkl~-~lp~~i-------g----------------------------------------------------~~~tl~~  170 (722)
T KOG0532|consen  151 SNNKLT-SLPEEI-------G----------------------------------------------------LLPTLAH  170 (722)
T ss_pred             ecCccc-cCCccc-------c----------------------------------------------------cchhHHH
Confidence            999997 677766       2                                                    1456778


Q ss_pred             EeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcC
Q 046050          583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL  662 (779)
Q Consensus       583 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  662 (779)
                      ||.+.|++. .+|..++++.+|+.|++..|++. ..|.++..| .|..||+|+|+++ .+|..|.+|..|++|-|.+|+|
T Consensus       171 ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  171 LDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence            999999998 78888999999999999999988 567677754 5888999999998 8899999999999999999999


Q ss_pred             c
Q 046050          663 S  663 (779)
Q Consensus       663 ~  663 (779)
                      +
T Consensus       247 q  247 (722)
T KOG0532|consen  247 Q  247 (722)
T ss_pred             C
Confidence            7

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.9e-13  Score=141.27  Aligned_cols=172  Identities=31%  Similarity=0.480  Sum_probs=154.0

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      -...|++.|++. .+|..+..+..|..+.|.+|.+. .+|..++++..|.++||+.|+++ .+|..++.           
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-----------  142 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-----------  142 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-----------
Confidence            557899999998 78888889999999999999998 78999999999999999999998 67766521           


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                       --|+.|-+++|+++ .+|+.++.+..|..||
T Consensus       143 -------------------------------------------------lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen  143 -------------------------------------------------LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLD  172 (722)
T ss_pred             -------------------------------------------------CcceeEEEecCccc-cCCcccccchhHHHhh
Confidence                                                             13678999999999 8999999999999999


Q ss_pred             cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC
Q 046050          609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC  688 (779)
Q Consensus       609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc  688 (779)
                      .|.|.+. .+|..++++.+|+.|.++.|++. ..|..+..| .|..||+|.|+++ .||-.|..+..+..+-++.||..-
T Consensus       173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            9999998 78889999999999999999998 778888865 4899999999999 789889999999999999999764

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=2.7e-11  Score=137.17  Aligned_cols=92  Identities=29%  Similarity=0.504  Sum_probs=85.0

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc-ccCcEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL-YALAIF  655 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  655 (779)
                      ++.|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|+++|.+|..+..+ .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            5689999999999999999999999999999999999999999999999999999999999999999998774 577899


Q ss_pred             EccCCcCcccCCC
Q 046050          656 SVAHNNLSGKVPD  668 (779)
Q Consensus       656 ~ls~N~l~~~~p~  668 (779)
                      ++++|+..|.+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999987776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.6e-11  Score=133.19  Aligned_cols=179  Identities=32%  Similarity=0.399  Sum_probs=120.0

Q ss_pred             CcccEEEccCCcCcccchhhHhh--cceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEc
Q 046050          425 WLLTQVHLSRNKIEGQLEDVFGD--ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDL  502 (779)
Q Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  502 (779)
                      ..++.+++.+|.++.+.+.....  .|+.|++++|++. .+|..+..+++|+.|++++|++. .+|......+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            33444444444444444333222  3666666666666 44456777888888888888887 44444446778888888


Q ss_pred             cCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeE
Q 046050          503 SHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFG  582 (779)
Q Consensus       503 s~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  582 (779)
                      ++|+++ .+|...                                                           ..+..|++
T Consensus       194 s~N~i~-~l~~~~-----------------------------------------------------------~~~~~L~~  213 (394)
T COG4886         194 SGNKIS-DLPPEI-----------------------------------------------------------ELLSALEE  213 (394)
T ss_pred             cCCccc-cCchhh-----------------------------------------------------------hhhhhhhh
Confidence            888887 555532                                                           00344777


Q ss_pred             EeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcC
Q 046050          583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL  662 (779)
Q Consensus       583 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  662 (779)
                      +++++|.+. ..+..+..+..+..|.+++|++. ..+..++.++++++|++++|+++...+  +..+.+++.|++++|.+
T Consensus       214 l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence            888888655 56667777888888888888877 346777788888888888888874433  77788888888888888


Q ss_pred             cccCCCC
Q 046050          663 SGKVPDR  669 (779)
Q Consensus       663 ~~~~p~~  669 (779)
                      +...|..
T Consensus       290 ~~~~~~~  296 (394)
T COG4886         290 SNALPLI  296 (394)
T ss_pred             cccchhh
Confidence            7666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=7.9e-12  Score=119.17  Aligned_cols=62  Identities=27%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC-chhhhhcccCcEEEccCCcCcc
Q 046050          601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI-PTQLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~  664 (779)
                      +-+.+.|.|+.|.|.  .-..++.+-+|..||+++|+|.... -..++++|.|+.+.+.+|++.+
T Consensus       351 LGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            444455555555553  1223445555556666666554221 1244556666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=8.2e-11  Score=127.63  Aligned_cols=151  Identities=34%  Similarity=0.440  Sum_probs=65.6

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCC-CCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEc
Q 046050          354 SLLGGLYLSDNHISGKIPKWLGNLS-NLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHL  432 (779)
Q Consensus       354 ~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  432 (779)
                      +.++.+++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|+++...+.....+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            33444444444444 2223233332 4444444444444 3333344445555555555554432222223444444444


Q ss_pred             cCCcCcccchhh-HhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          433 SRNKIEGQLEDV-FGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       433 ~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      ++|++..+++.. ....|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..+..+++++.|++++|.++
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence            444444443332 2222455555555322 233444555555555555555542 2333444444555555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=9.5e-12  Score=125.06  Aligned_cols=108  Identities=25%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             cccEEECCCCcCCCC-cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCC-CCCCCCCCccEE
Q 046050          182 QLQNISLSGCRCDFT-FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQ-MPVNPLKQLTTI  259 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L  259 (779)
                      +|+.|.++.|+++.. +...+..+|+|+.|++.+|.....-... .+.+..|++|+|++|.+..... ...+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            444444444444322 1122334455555555555311111000 1223445555555555443221 123445555555


Q ss_pred             EccCCCCCcCCc--hh----hhhcCCCCCEEEccCCcC
Q 046050          260 DVSKNFIQGHIP--TG----IGAFLPRLEHFNISRNVL  291 (779)
Q Consensus       260 ~Ls~n~l~~~i~--~~----~~~~l~~L~~L~l~~n~l  291 (779)
                      +++.+.+. .+.  +.    ....+++|++|++..|++
T Consensus       277 nls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  277 NLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hccccCcc-hhcCCCccchhhhcccccceeeecccCcc
Confidence            55555544 211  11    012245566666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=1.4e-11  Score=120.60  Aligned_cols=140  Identities=17%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             ccchhhhhCCCCCCcEEeCCCCccc----------cCCCCCccEEEcccc---ccccccc-------hhhcCCCCcCEEE
Q 046050            4 SSLLQSLWTPFPNLETLELRDYHLE----------LLNFTNLEVLILDGS---ALHIRFL-------QSIAVLTSVKHLS   63 (779)
Q Consensus         4 ~~~~~~~~~~~~~L~~L~Ls~~~~~----------~~~l~~L~~L~L~~~---~~~~~~~-------~~~~~l~~L~~L~   63 (779)
                      .+.+-........+++++||+|.+.          +.+-+.|+..+++.-   +.....|       +++..+++|++|+
T Consensus        19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            4556677788999999999999983          556778888888763   2222233       4456777899999


Q ss_pred             CCCCCCcccCC--c-ccccCCCCCcEEEccCcccccccC-------------hhccCCCCCCEEeCCCCcCcccCCc---
Q 046050           64 MRNCYLYGTSD--F-QGLCELVHLQELHIGYNNIGGTLP-------------WCLVNMTSLRILDIASNQITGNISS---  124 (779)
Q Consensus        64 L~~n~l~~~~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~-------------~~~~~l~~L~~L~Ls~n~i~~~i~~---  124 (779)
                      ||.|.+....+  . +-+.++..|++|.|.+|.+.-.-.             ...+.-++|+++...+|++. .-+.   
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~  177 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATAL  177 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHH
Confidence            99998842211  1 234567888888888887653211             12234466777777777765 2221   


Q ss_pred             -hhhcCCCCCCEEEccccccc
Q 046050          125 -SPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       125 -~~~~~l~~L~~L~Ls~n~l~  144 (779)
                       ..|...+.|+.+.++.|.|.
T Consensus       178 A~~~~~~~~leevr~~qN~I~  198 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIR  198 (382)
T ss_pred             HHHHHhccccceEEEeccccc
Confidence             13455567777777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.5e-11  Score=108.13  Aligned_cols=106  Identities=26%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CCCCcCEEECCCCCCcccCCccccc-CCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCC
Q 046050           55 VLTSVKHLSMRNCYLYGTSDFQGLC-ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL  133 (779)
Q Consensus        55 ~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  133 (779)
                      +..++++|+|++|.|...   +.++ .+.+|+.|++++|.|+..  +.+..+++|++|++++|+|+ .+.......+++|
T Consensus        17 n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            334556666666665422   1343 355666666666666532  23555666666666666666 5543112345666


Q ss_pred             CEEEcccccccccCCcccccCCCCCcEEECcCC
Q 046050          134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN  166 (779)
Q Consensus       134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~  166 (779)
                      ++|++++|+|...-....+..+++|+.|++.+|
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            666666666653222233333444443333333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.5e-11  Score=121.02  Aligned_cols=205  Identities=22%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             CCCCCCcEEeCCCCcccc-------CCCCCccEEEccccccccc--cchhhcCCCCcCEEECCCCCCcccCCcccccCCC
Q 046050           12 TPFPNLETLELRDYHLEL-------LNFTNLEVLILDGSALHIR--FLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELV   82 (779)
Q Consensus        12 ~~~~~L~~L~Ls~~~~~~-------~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   82 (779)
                      ++++.|+++.|..+....       ..+++++.|+|++|-++..  .......+++|+.|+++.|++.-......-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345566666666665532       2356666666666655432  2234455666666666666653222221222456


Q ss_pred             CCcEEEccCcccccc-cChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEE
Q 046050           83 HLQELHIGYNNIGGT-LPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKF  161 (779)
Q Consensus        83 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  161 (779)
                      +|+.|.|+.|.++.. +......+|+|+.|+|..|... .+......-+..|++|||++|++...........++     
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-----  271 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-----  271 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCccccccccccccccc-----
Confidence            666666666666542 2233455666666666666422 122213344556666666666554222222333344     


Q ss_pred             ECcCCceeeecccCCCCCCccccEEECCCCcCCCC-cchh-----hhCCCCCCEEEccCCCCCCcCch--hhhhcCCCCC
Q 046050          162 YGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT-FPRF-----LYYQHELRYVDLSHMNLRGEFPN--WLLENNKELE  233 (779)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~-----l~~~~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~  233 (779)
                                          .|+.|+++.|.+... .|+.     ...+++|++|+++.|++. .++.  . ...+++|+
T Consensus       272 --------------------~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~-l~~l~nlk  329 (505)
T KOG3207|consen  272 --------------------GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNH-LRTLENLK  329 (505)
T ss_pred             --------------------chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccch-hhccchhh
Confidence                                455555555544332 2222     345678999999999885 3322  1 23456777


Q ss_pred             EEECcCCcccc
Q 046050          234 TLLLANNSLSG  244 (779)
Q Consensus       234 ~L~L~~n~~~~  244 (779)
                      .|.+..|.+..
T Consensus       330 ~l~~~~n~ln~  340 (505)
T KOG3207|consen  330 HLRITLNYLNK  340 (505)
T ss_pred             hhhcccccccc
Confidence            88877777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=4.8e-11  Score=113.90  Aligned_cols=132  Identities=30%  Similarity=0.284  Sum_probs=105.3

Q ss_pred             hcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCC
Q 046050          447 DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYD  526 (779)
Q Consensus       447 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~  526 (779)
                      ..|+++|+++|.|+ .+.....-.|.++.|++++|.+....  .+..+++|+.||||+|.++. +..+.           
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh-----------  348 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWH-----------  348 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhH-----------
Confidence            34999999999998 55667778899999999999998443  37889999999999999972 22221           


Q ss_pred             CCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcE
Q 046050          527 SAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRA  606 (779)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  606 (779)
                                                                      .-+-+.++|.|++|.+..  -..++.+.+|..
T Consensus       349 ------------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvn  378 (490)
T KOG1259|consen  349 ------------------------------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVN  378 (490)
T ss_pred             ------------------------------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhhee
Confidence                                                            114578899999999873  245778899999


Q ss_pred             EEcCCCcCCccC-chhhhCCCCCCEEECCCCcCcCCCch
Q 046050          607 LNLSHNNLMGTI-PSTFSHLSQIESLDLSYNMLQGKIPT  644 (779)
Q Consensus       607 L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~  644 (779)
                      ||+++|+|.... -..++++|.|+.+.|.+|++.+ +|+
T Consensus       379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd  416 (490)
T KOG1259|consen  379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD  416 (490)
T ss_pred             ccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence            999999997443 2678999999999999999984 443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.2e-10  Score=107.44  Aligned_cols=130  Identities=24%  Similarity=0.323  Sum_probs=45.1

Q ss_pred             cCCCCCccEEEccccccccccchhhc-CCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhc-cCCC
Q 046050           29 LLNFTNLEVLILDGSALHIRFLQSIA-VLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCL-VNMT  106 (779)
Q Consensus        29 ~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~  106 (779)
                      +.+..+++.|+|++|.|+.+  ..++ .+.+|+.|++++|.+...   +.+..+++|++|++++|+|+.. .+.+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            34455677788888877643  2344 467788888888877533   2567778888888888888743 3334 4578


Q ss_pred             CCCEEeCCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCC--cccccCCCCCcEEECcC
Q 046050          107 SLRILDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPIS--FEPFFNHSKLKKFYGQK  165 (779)
Q Consensus       107 ~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~l~~  165 (779)
                      +|++|++++|+|. .+.. ..+..+++|++|++.+|.++..-.  ...+..+|+|+.||...
T Consensus        89 ~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   89 NLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            8888888888886 3332 246677888888888887763211  12345667777665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=3.6e-11  Score=117.74  Aligned_cols=196  Identities=21%  Similarity=0.226  Sum_probs=95.1

Q ss_pred             CCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCC
Q 046050          278 LPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLL  356 (779)
Q Consensus       278 l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  356 (779)
                      +|+|++++||+|.+....+..+ ....+|..|++|.+.+|.+....-..++.  .|..|.  .++       -...-+.|
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~L  159 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKL  159 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcce
Confidence            3466666666666654444444 33444556666666666554211111110  011110  000       01122345


Q ss_pred             CEEEccCCccCCC----cchhhhCCCCCceEEccCCCCCCC----cchhhcCCCCCCEEEccCccCcccCC----cCcC-
Q 046050          357 GGLYLSDNHISGK----IPKWLGNLSNLVDIIMPNNHLEGP----IPANLCKLNFLTVLDLEVNNISGSLP----SCFS-  423 (779)
Q Consensus       357 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-  423 (779)
                      +++...+|++...    +...|...+.|+.+.+..|.|...    ....|..+++|+.|||.+|.++....    ..+. 
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s  239 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS  239 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence            5555555544421    123344445555555555554421    22344555666666666665542211    1111 


Q ss_pred             CCcccEEEccCCcCcccchhhHhhc-------ceEEEccCccccC----cCchhhhcCCCCcEEEccCCcCc
Q 046050          424 SWLLTQVHLSRNKIEGQLEDVFGDI-------LVTLDLSYNRFSG----RIPNWIDKLSHLSYLILANNNLE  484 (779)
Q Consensus       424 ~~~L~~L~l~~n~l~~~~~~~~~~~-------L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~  484 (779)
                      .++|+.+++++|.+.......+...       |++|.+.+|.|+.    .+...+...+.|..|+|++|++.
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            3346666666666655444443321       6777777777652    12234455788888999999883

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=8e-10  Score=83.70  Aligned_cols=59  Identities=36%  Similarity=0.533  Sum_probs=30.4

Q ss_pred             cCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCc
Q 046050          603 MIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN  661 (779)
Q Consensus       603 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  661 (779)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444455555555555555555554444455555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=1.3e-10  Score=125.99  Aligned_cols=246  Identities=28%  Similarity=0.249  Sum_probs=124.9

Q ss_pred             CCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEE
Q 046050          328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVL  407 (779)
Q Consensus       328 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  407 (779)
                      .+..++.+.++.|.+.. +...+..+++|+.+++.+|+|... ...+..+++|++|++++|.|+...+  +..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence            44555666666666652 223355556666666666666632 2224455566666666666553322  3344445555


Q ss_pred             EccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCccc
Q 046050          408 DLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGE  486 (779)
Q Consensus       408 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  486 (779)
                      ++++|.++. +...-.+..                      ++.+++++|.+...-+ . ...+.+++.+.+.+|.+...
T Consensus       146 ~l~~N~i~~-~~~~~~l~~----------------------L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  146 NLSGNLISD-ISGLESLKS----------------------LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             eeccCcchh-ccCCccchh----------------------hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            555555542 222111333                      4444444444442211 1 34455555555555555421


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050          487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK  566 (779)
Q Consensus       487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                        ..+..+..+..+++..|.++..-+...                                                   
T Consensus       202 --~~~~~~~~l~~~~l~~n~i~~~~~l~~---------------------------------------------------  228 (414)
T KOG0531|consen  202 --EGLDLLKKLVLLSLLDNKISKLEGLNE---------------------------------------------------  228 (414)
T ss_pred             --cchHHHHHHHHhhcccccceeccCccc---------------------------------------------------
Confidence              222333333444555555542111000                                                   


Q ss_pred             Cceeeecccccc--eeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCC---
Q 046050          567 NTSYYYQGRILK--IMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK---  641 (779)
Q Consensus       567 ~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---  641 (779)
                                +.  .|+.+++++|.+. .++..+..+..+..|++++|++...-  .+...+.+..+.++.|.+...   
T Consensus       229 ----------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  229 ----------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             ----------chhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence                      11  2566777777776 44455666777777777777776322  244566666777777766521   


Q ss_pred             Cchh-hhhcccCcEEEccCCcCcccCC
Q 046050          642 IPTQ-LVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       642 ~p~~-l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      .... ....+.++...+.+|+.....+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hccccccccccccccccccCccccccc
Confidence            1111 3445677777777777765544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.7e-10  Score=123.53  Aligned_cols=221  Identities=27%  Similarity=0.198  Sum_probs=133.9

Q ss_pred             hcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEE
Q 046050          398 LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLI  477 (779)
Q Consensus       398 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  477 (779)
                      +..+.+|+.+++.+|+|..+....-.+.+|++|++++|.|+.+.+-.....|+.|++++|.|...  ..+..+++|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            34444555555555555433222222445555555555555544433333377777777777633  3455588899999


Q ss_pred             ccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCc
Q 046050          478 LANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR  556 (779)
Q Consensus       478 L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (779)
                      +++|++....+ . ...+.+++.+++.+|.+...-....                                         
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~-----------------------------------------  206 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL-----------------------------------------  206 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH-----------------------------------------
Confidence            99999885544 2 5677888889999998862211111                                         


Q ss_pred             ccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc--cCcEEEcCCCcCCccCchhhhCCCCCCEEECC
Q 046050          557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN--MIRALNLSHNNLMGTIPSTFSHLSQIESLDLS  634 (779)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  634 (779)
                                          +..+..+++..|.++...+  +..+.  .|+.+++++|++. ..+..+..+..+..|+++
T Consensus       207 --------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  207 --------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLS  263 (414)
T ss_pred             --------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchh
Confidence                                2234445778888773322  22233  3899999999998 455677888999999999


Q ss_pred             CCcCcCCCchhhhhcccCcEEEccCCcCccc---CCCC-CCcCCCCCCCcccCCCCC
Q 046050          635 YNMLQGKIPTQLVELYALAIFSVAHNNLSGK---VPDR-VGQFATFTENSYDGNSLL  687 (779)
Q Consensus       635 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~---~p~~-~~~~~~l~~~~~~~N~~l  687 (779)
                      +|++...-  .+...+.+..+....|++...   .... .....++....+.+||..
T Consensus       264 ~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  264 SNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             hccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            99987433  345566777888888876522   1110 123344455555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.6e-09  Score=81.98  Aligned_cols=61  Identities=43%  Similarity=0.497  Sum_probs=56.9

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcC
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML  638 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  638 (779)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999977778999999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=5.4e-09  Score=120.99  Aligned_cols=125  Identities=22%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             CCCcEEeCCCCccc----cCCCCCccEEEccccc--cccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEE
Q 046050           15 PNLETLELRDYHLE----LLNFTNLEVLILDGSA--LHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH   88 (779)
Q Consensus        15 ~~L~~L~Ls~~~~~----~~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   88 (779)
                      ...+.+.+-+|.+.    -...+.|++|-+..|.  +.......|..++.|++|||++|.-.+.+| ..++++.+||+|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhccc
Confidence            34455555555542    2234467777777665  333444456667777777777665445566 3677777777777


Q ss_pred             ccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEccccc
Q 046050           89 IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ  142 (779)
Q Consensus        89 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~  142 (779)
                      ++++.+. .+|..++++..|.+||+..+.-...+|. ....+++|++|.+....
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            7777776 6777777777777777777665433333 45557777777766544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=3.1e-09  Score=101.78  Aligned_cols=215  Identities=16%  Similarity=0.182  Sum_probs=129.2

Q ss_pred             cCCCCcCEEECCCCCCcccCCccccc-CCCCCcEEEccCccccc--ccChhccCCCCCCEEeCCCCcCcccCCchhh-cC
Q 046050           54 AVLTSVKHLSMRNCYLYGTSDFQGLC-ELVHLQELHIGYNNIGG--TLPWCLVNMTSLRILDIASNQITGNISSSPL-RY  129 (779)
Q Consensus        54 ~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~-~~  129 (779)
                      .....++.|.+.++.+...-....++ .+++++++||.+|.|+.  .+...+.++|.|++|+|+.|++...|..  . ..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p  119 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLP  119 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cccc
Confidence            33445567777777775443333444 47889999999999874  3445578899999999999998744433  2 35


Q ss_pred             CCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCE
Q 046050          130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRY  209 (779)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~  209 (779)
                      +.+|++|-|.+..+...-....+..+++++.|.++.|.               ++.+++..+.+...       .+.+++
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~---------------~rq~n~Dd~c~e~~-------s~~v~t  177 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS---------------LRQLNLDDNCIEDW-------STEVLT  177 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch---------------hhhhcccccccccc-------chhhhh
Confidence            67899999888877644444556777888888777773               33333333332211       122333


Q ss_pred             EEccCCCCCC--cCchhhhhcCCCCCEEECcCCcccccC-CCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEc
Q 046050          210 VDLSHMNLRG--EFPNWLLENNKELETLLLANNSLSGFF-QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI  286 (779)
Q Consensus       210 L~Ls~n~l~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l  286 (779)
                      |....|....  .+ ..+.+-+|++..+.+..|.+.... ...+..++.+.-|+|+.|+|...-.-.....+++|..|.+
T Consensus       178 lh~~~c~~~~w~~~-~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  178 LHQLPCLEQLWLNK-NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRV  256 (418)
T ss_pred             hhcCCcHHHHHHHH-HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeec
Confidence            4433332110  00 001133466777777777665432 2345566777778888887763322223334677778888


Q ss_pred             cCCcCCc
Q 046050          287 SRNVLNG  293 (779)
Q Consensus       287 ~~n~l~~  293 (779)
                      +++++..
T Consensus       257 ~~~Pl~d  263 (418)
T KOG2982|consen  257 SENPLSD  263 (418)
T ss_pred             cCCcccc
Confidence            7777663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.9e-08  Score=116.54  Aligned_cols=128  Identities=17%  Similarity=0.131  Sum_probs=90.6

Q ss_pred             CCCCCccEEEccccccccccchhhcCCCCcCEEECCCCC--CcccCCcccccCCCCCcEEEccCcccccccChhccCCCC
Q 046050           30 LNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY--LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTS  107 (779)
Q Consensus        30 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  107 (779)
                      .+....|...+.++.+.. .+.+. .++.|++|-+..|.  + ...+.+.|..++.|++|||++|.=-+.+|..++.+-+
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l-~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWL-LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhh-hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            345667777777777653 23322 23478888888886  3 3444445778999999999988666689999999999


Q ss_pred             CCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEEC
Q 046050          108 LRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG  163 (779)
Q Consensus       108 L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l  163 (779)
                      ||+|++++..++ .+|. .+++++.|.+|++..+.-...+ ......+.+|++|.+
T Consensus       597 LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRL  649 (889)
T ss_pred             hhcccccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEe
Confidence            999999999998 8888 7889999999998887643222 223333555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=6.6e-10  Score=118.41  Aligned_cols=149  Identities=25%  Similarity=0.379  Sum_probs=73.4

Q ss_pred             CCCCCCcEEeCCCCccc----cCC---------------------------------CCCccEEEccccccccccchhhc
Q 046050           12 TPFPNLETLELRDYHLE----LLN---------------------------------FTNLEVLILDGSALHIRFLQSIA   54 (779)
Q Consensus        12 ~~~~~L~~L~Ls~~~~~----~~~---------------------------------l~~L~~L~L~~~~~~~~~~~~~~   54 (779)
                      ..|.+||+|.|+++.+.    +..                                 +-.|.+.+.+.|++. ....++.
T Consensus       106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~SLq  184 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDESLQ  184 (1096)
T ss_pred             ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHHHH
Confidence            47899999999999972    111                                 112333333344333 2233344


Q ss_pred             CCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCC
Q 046050           55 VLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE  134 (779)
Q Consensus        55 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~  134 (779)
                      -+++|+.|+|++|++...   +.+..|++|++|||++|.+.....-....++ |+.|.+++|.++ ++-.  +.++++|+
T Consensus       185 ll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~g--ie~LksL~  257 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLRG--IENLKSLY  257 (1096)
T ss_pred             HHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhhh--HHhhhhhh
Confidence            445555555555555322   2344555555555555555522222233333 555555555555 3332  44555555


Q ss_pred             EEEcccccccccCCcccccCCCCCcEEECcCCce
Q 046050          135 ELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL  168 (779)
Q Consensus       135 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l  168 (779)
                      .||+++|-+.+--....+..+..|+.|++.+|.+
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5555555544332233334444455555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.9e-09  Score=102.03  Aligned_cols=222  Identities=19%  Similarity=0.159  Sum_probs=136.3

Q ss_pred             cEEEccccccccccchhhcCC--CCcCEEECCCCCCcccCCcccccC-CCCCcEEEccCccccc-ccChhccCCCCCCEE
Q 046050           36 EVLILDGSALHIRFLQSIAVL--TSVKHLSMRNCYLYGTSDFQGLCE-LVHLQELHIGYNNIGG-TLPWCLVNMTSLRIL  111 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L  111 (779)
                      +.+|+.+-.++   |++++.+  +.+..+.+....+....-.+.+.- -+.|++||||...|+. .+-..++.|.+|+.|
T Consensus       139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l  215 (419)
T KOG2120|consen  139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL  215 (419)
T ss_pred             eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence            45677776654   3443333  355556665443322211111111 2459999999998875 234456889999999


Q ss_pred             eCCCCcCcccCCchhhcCCCCCCEEEccccc-ccccCCcccccCCCCCcEEECcCCceeeecccCCCCC-CccccEEECC
Q 046050          112 DIASNQITGNISSSPLRYLTSLEELRVSNNQ-FQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP-KFQLQNISLS  189 (779)
Q Consensus       112 ~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~~L~~L~L~  189 (779)
                      .|.++++.+.|-. .+++-.+|+.|+++.+. ++.......+.+++.|..|+++++.++.......... -.+|+.|+++
T Consensus       216 SlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls  294 (419)
T KOG2120|consen  216 SLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS  294 (419)
T ss_pred             cccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence            9999999876666 68888999999999753 4422222356788888888888888766554333222 2378888888


Q ss_pred             CCcCC---CCcchhhhCCCCCCEEEccCCC-CCCcCchhhhhcCCCCCEEECcCCcccccCCC---CCCCCCCccEEEcc
Q 046050          190 GCRCD---FTFPRFLYYQHELRYVDLSHMN-LRGEFPNWLLENNKELETLLLANNSLSGFFQM---PVNPLKQLTTIDVS  262 (779)
Q Consensus       190 ~n~~~---~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~Ls  262 (779)
                      ++.-.   ..+......+++|.+||||++. ++......+ -+++.|++|.++.|..  +.|.   .+...+.|.+||+.
T Consensus       295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence            77321   1223334567788888887764 332222222 3567777777777752  2232   34566777777776


Q ss_pred             CC
Q 046050          263 KN  264 (779)
Q Consensus       263 ~n  264 (779)
                      ++
T Consensus       372 g~  373 (419)
T KOG2120|consen  372 GC  373 (419)
T ss_pred             cc
Confidence            54

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=2.8e-09  Score=113.75  Aligned_cols=57  Identities=33%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      |.+.+.++|.+. .....+.-++.|+.|+|++|+++...  .+..++.|++|||++|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence            666666777766 44455666677777777777776432  5566677777777777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.52  E-value=9.2e-09  Score=87.14  Aligned_cols=89  Identities=21%  Similarity=0.333  Sum_probs=64.5

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +..+.|+|++|+|. .+|.+++.++.|+.|+++.|.+. ..|..+..|.++..||..+|.+. .+|..+-.-+.....++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL  153 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence            45667888888888 77777888888888888888887 67777777888888888888887 55554433344444556


Q ss_pred             cCCcCcccCCCC
Q 046050          658 AHNNLSGKVPDR  669 (779)
Q Consensus       658 s~N~l~~~~p~~  669 (779)
                      .++++.+.+|..
T Consensus       154 gnepl~~~~~~k  165 (177)
T KOG4579|consen  154 GNEPLGDETKKK  165 (177)
T ss_pred             cCCcccccCccc
Confidence            777777777763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=5.3e-09  Score=100.22  Aligned_cols=178  Identities=21%  Similarity=0.175  Sum_probs=96.4

Q ss_pred             CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCC-CCCcCCchhhhhcCCCCCEE
Q 046050          206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN-FIQGHIPTGIGAFLPRLEHF  284 (779)
Q Consensus       206 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L  284 (779)
                      .|+++|||+..++..--..++..|.+|+.|.+.++++.+.+...+..-..|+.|+++.+ .++..-..-++..+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46677777766664444455566677777777777776655556666667777777765 23311122334446677777


Q ss_pred             EccCCcCCcccCccc--ccccCCccccEEEccCCc--CC-ccccccccCCCCCCEEEccCCc-CccccCccccCCCCCCE
Q 046050          285 NISRNVLNGSIPCSL--HMTMGCFSLQILALSNNS--LQ-GHIFSRSFNLTNLVTLQLDANQ-FTGGIPENLLNCSLLGG  358 (779)
Q Consensus       285 ~l~~n~l~~~~~~~~--~~~~~~~~L~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  358 (779)
                      +++.|.+.......+  +...   +|+.|+++++.  +. ..+..-...+++|.+||+++|. ++......|.+++.|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise---~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISE---TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             CchHhhccchhhhHHHhhhch---hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            777776653332221  2222   56666666652  11 1111222356666666666653 22222234455666666


Q ss_pred             EEccCCccCCCcchh---hhCCCCCceEEccCC
Q 046050          359 LYLSDNHISGKIPKW---LGNLSNLVDIIMPNN  388 (779)
Q Consensus       359 L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n  388 (779)
                      |.++.|..  ++|..   +...++|.+|++.++
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66666653  23332   334555666665554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.34  E-value=1.5e-07  Score=89.30  Aligned_cols=166  Identities=16%  Similarity=0.215  Sum_probs=108.2

Q ss_pred             ccccchhhhhCCCCCCcEEeCCCCccc----------cCCCCCccEEEcccccc---ccc-------cchhhcCCCCcCE
Q 046050            2 NVSSLLQSLWTPFPNLETLELRDYHLE----------LLNFTNLEVLILDGSAL---HIR-------FLQSIAVLTSVKH   61 (779)
Q Consensus         2 ~~~~~~~~~~~~~~~L~~L~Ls~~~~~----------~~~l~~L~~L~L~~~~~---~~~-------~~~~~~~l~~L~~   61 (779)
                      +++.++..+.+ ...+.++|||+|.++          +.+-++|++.+++.--.   ...       +.+++.+|++|+.
T Consensus        18 Dvk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~   96 (388)
T COG5238          18 DVKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK   96 (388)
T ss_pred             hhhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence            35556666655 888999999999983          56677888888876321   111       2356778899999


Q ss_pred             EECCCCCCcccCCc---ccccCCCCCcEEEccCcccccc----cCh---------hccCCCCCCEEeCCCCcCcccCCch
Q 046050           62 LSMRNCYLYGTSDF---QGLCELVHLQELHIGYNNIGGT----LPW---------CLVNMTSLRILDIASNQITGNISSS  125 (779)
Q Consensus        62 L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~i~~~----~~~---------~~~~l~~L~~L~Ls~n~i~~~i~~~  125 (779)
                      ++||.|.+....+.   +.+++-+.|.+|.+++|.+.-+    +..         -..+-|.|++.+...|++. ..+..
T Consensus        97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~  175 (388)
T COG5238          97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKE  175 (388)
T ss_pred             eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHH
Confidence            99999988544442   2355678899999998876422    111         1234578888888888876 44331


Q ss_pred             ----hhcCCCCCCEEEccccccccc----CCcccccCCCCCcEEECcCCcee
Q 046050          126 ----PLRYLTSLEELRVSNNQFQIP----ISFEPFFNHSKLKKFYGQKNRLF  169 (779)
Q Consensus       126 ----~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~l~~~~l~  169 (779)
                          .+..-.+|+++.+..|.|...    .....+..+.+|+.|++..|.++
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence                122236788888888887621    11123455667777777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=6.7e-07  Score=86.11  Aligned_cols=205  Identities=15%  Similarity=0.089  Sum_probs=110.0

Q ss_pred             CCCCccEEEcccccccc--ccchhhcCCCCcCEEECCCCCCcccCCcccc-cCCCCCcEEEccCcccccc-cChhccCCC
Q 046050           31 NFTNLEVLILDGSALHI--RFLQSIAVLTSVKHLSMRNCYLYGTSDFQGL-CELVHLQELHIGYNNIGGT-LPWCLVNMT  106 (779)
Q Consensus        31 ~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~  106 (779)
                      ..++++.++|.+|.++.  .+...+.++++|++|++++|.+...+.  .+ ..+.+|++|-|.+..+.-. ....+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            35677778888877664  223445677788888888887753332  22 2456777777777766543 233456677


Q ss_pred             CCCEEeCCCCcCcc-cCCchhhcC-CCCCCEEEcccccccccCCc-ccccCCCCCcEEECcCCceeeecccCCCCCCccc
Q 046050          107 SLRILDIASNQITG-NISSSPLRY-LTSLEELRVSNNQFQIPISF-EPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQL  183 (779)
Q Consensus       107 ~L~~L~Ls~n~i~~-~i~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L  183 (779)
                      .++.|.+|.|.+.- .+..+.... -+.+++|.+-.|...--... ..-.-++++..+.+..+.+........+.+++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            77777777774320 011111111 12333333333322100000 0112235555555666655444444444555566


Q ss_pred             cEEECCCCcCCCC-cchhhhCCCCCCEEEccCCCCCCcCch-----hhhhcCCCCCEEEC
Q 046050          184 QNISLSGCRCDFT-FPRFLYYQHELRYVDLSHMNLRGEFPN-----WLLENNKELETLLL  237 (779)
Q Consensus       184 ~~L~L~~n~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~~~-----~~~~~~~~L~~L~L  237 (779)
                      .-|+|+.+++... ..+.+..++.|..|.++++.+...+..     -+.+.+++++.|+=
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            6777777777643 335677778888888888876643321     12245666766643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=2e-06  Score=81.83  Aligned_cols=162  Identities=22%  Similarity=0.203  Sum_probs=86.8

Q ss_pred             cccCCCCCCEEEccCCccCCCcch----hhhCCCCCceEEccCCCCCCCcchh-------------hcCCCCCCEEEccC
Q 046050          349 NLLNCSLLGGLYLSDNHISGKIPK----WLGNLSNLVDIIMPNNHLEGPIPAN-------------LCKLNFLTVLDLEV  411 (779)
Q Consensus       349 ~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~  411 (779)
                      ++.+|+.|+.++||+|.+....|+    .+..-+.|.+|.+++|.+.......             ..+-|.|+..+...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            345566666666666666654443    2344566777777777654221111             12456677777777


Q ss_pred             ccCcccCCcCc----C-CCcccEEEccCCcCcccchhh--Hh-----hcceEEEccCccccCcCc----hhhhcCCCCcE
Q 046050          412 NNISGSLPSCF----S-SWLLTQVHLSRNKIEGQLEDV--FG-----DILVTLDLSYNRFSGRIP----NWIDKLSHLSY  475 (779)
Q Consensus       412 n~l~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~~~--~~-----~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~  475 (779)
                      |++..-....+    . -..|+++.+..|.|.......  +.     ..|+.||+..|-++-...    ..+...+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            77652221111    1 125677777777665432221  11     127777777776653222    23334556777


Q ss_pred             EEccCCcCcccCcccc------cCCCCCCEEEccCCcCccc
Q 046050          476 LILANNNLEGEVPVQL------CLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       476 L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~  510 (779)
                      |.+.+|-++..-...+      ...++|+.|-..+|...+.
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            7777776654332221      1246677777777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=5.8e-06  Score=57.02  Aligned_cols=36  Identities=33%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             cCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc
Q 046050          603 MIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ  639 (779)
Q Consensus       603 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  639 (779)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 34445556666666666666555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=7.5e-06  Score=56.45  Aligned_cols=36  Identities=36%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             CCcEEEccCcccccccChhccCCCCCCEEeCCCCcCc
Q 046050           83 HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQIT  119 (779)
Q Consensus        83 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  119 (779)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5566666666666 34444666666666666666665

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=3.1e-06  Score=95.86  Aligned_cols=159  Identities=21%  Similarity=0.273  Sum_probs=86.1

Q ss_pred             CCcCEEECCCCCCcccCCcccccC-CCCCcEEEccCcccccc-cChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCC
Q 046050           57 TSVKHLSMRNCYLYGTSDFQGLCE-LVHLQELHIGYNNIGGT-LPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE  134 (779)
Q Consensus        57 ~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~  134 (779)
                      .+|++|++++......-....++. +|.|+.|.+++-.+... ......++|+|..||+|+.+++ .+.  .++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccccHH
Confidence            567777777754422211123443 67777777776655432 1233456777777777777777 552  467777777


Q ss_pred             EEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccC
Q 046050          135 ELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSH  214 (779)
Q Consensus       135 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~  214 (779)
                      +|.+.+-.+...-....+.++++|++||++........                   .+.....+.-..+|+|+.||.|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-------------------~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-------------------KIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-------------------HHHHHHHHhcccCccccEEecCC
Confidence            77666655442111223444555555554443211000                   00001112223467888888888


Q ss_pred             CCCCCcCchhhhhcCCCCCEEEC
Q 046050          215 MNLRGEFPNWLLENNKELETLLL  237 (779)
Q Consensus       215 n~l~~~~~~~~~~~~~~L~~L~L  237 (779)
                      +.+.+.+-+.+...-++|+.+..
T Consensus       260 Tdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  260 TDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             cchhHHHHHHHHHhCccHhhhhh
Confidence            87776666655555556655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.89  E-value=5.1e-07  Score=91.16  Aligned_cols=85  Identities=22%  Similarity=0.191  Sum_probs=45.5

Q ss_pred             CcCEEECCCCCCcccCCcccc-cCCCCCcEEEccCcc-cccccChhc-cCCCCCCEEeCCCCc-CcccCCchhhcCCCCC
Q 046050           58 SVKHLSMRNCYLYGTSDFQGL-CELVHLQELHIGYNN-IGGTLPWCL-VNMTSLRILDIASNQ-ITGNISSSPLRYLTSL  133 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~~i~~~~~~~l~~L  133 (779)
                      .|+.|.+.+++-.+..+...+ ..++++++|++.++. ++...-..+ ..|++|++|+|..+. |+...-......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            567777777765444333222 347777777777763 332222222 456777777777632 3311111123356777


Q ss_pred             CEEEccccc
Q 046050          134 EELRVSNNQ  142 (779)
Q Consensus       134 ~~L~Ls~n~  142 (779)
                      ++|+++++.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=7.1e-07  Score=75.92  Aligned_cols=60  Identities=27%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             CCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCC
Q 046050          330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE  391 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  391 (779)
                      +.++.|++++|+++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+..+|...
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444444 33444444444444444444444 33344444444444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=2.8e-05  Score=71.22  Aligned_cols=103  Identities=21%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             cCEEECCCCCCcccCCcccccC-CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           59 VKHLSMRNCYLYGTSDFQGLCE-LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        59 L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      =+.++|.+.++...   +.++. +.....+||+.|.+..  -..|..+++|.+|.|.+|+|+ .|.+..-..+++|+.|.
T Consensus        21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             ccccccccccccch---hhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence            45677777665321   12322 3456778888888763  234777888888888888888 77764445567888888


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCc
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNR  167 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~  167 (779)
                      |.+|.|........++.+++|+.|.+-+|.
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCc
Confidence            888887743333445555555555444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.74  E-value=1.2e-06  Score=88.58  Aligned_cols=272  Identities=18%  Similarity=0.134  Sum_probs=121.3

Q ss_pred             CCcEEeCCCCcc--------ccCCCCCccEEEccccc-cccccchhh-cCCCCcCEEECCCCCCcccCCcccc-cCCCCC
Q 046050           16 NLETLELRDYHL--------ELLNFTNLEVLILDGSA-LHIRFLQSI-AVLTSVKHLSMRNCYLYGTSDFQGL-CELVHL   84 (779)
Q Consensus        16 ~L~~L~Ls~~~~--------~~~~l~~L~~L~L~~~~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L   84 (779)
                      .|+.|.++++.-        --.+++++++|.+.++. ++......+ ..++.|++|++..|..........+ ..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            566666666553        12346666666666664 333333333 2456666666666432222111112 236666


Q ss_pred             cEEEccCc-cccccc-ChhccCCCCCCEEeCCCCcCcccCCchhhc----CCCCCCEEEccccc-ccccCCcccccCCCC
Q 046050           85 QELHIGYN-NIGGTL-PWCLVNMTSLRILDIASNQITGNISSSPLR----YLTSLEELRVSNNQ-FQIPISFEPFFNHSK  157 (779)
Q Consensus        85 ~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~----~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~  157 (779)
                      ++|++|.+ .|++.. .....++..++.+.+++|.   +.+...+.    +...+..+++..+. ++..-          
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~----------  285 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDED----------  285 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchH----------
Confidence            66666666 343311 1223444455555555432   12221221    12223333333321 22110          


Q ss_pred             CcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC-cc-hhhhCCCCCCEEEccCCC-CCCcCchhhhhcCCCCCE
Q 046050          158 LKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT-FP-RFLYYQHELRYVDLSHMN-LRGEFPNWLLENNKELET  234 (779)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~-~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~  234 (779)
                                     ....-..+..|+.+..+++.-.+. .. ..-.++++|+.+.++.++ ++..--..+..+++.|+.
T Consensus       286 ---------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~  350 (483)
T KOG4341|consen  286 ---------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER  350 (483)
T ss_pred             ---------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence                           011112233555555555532111 11 112345566666666654 222112222345566666


Q ss_pred             EECcCCccccc--CCCCCCCCCCccEEEccCCCCCcCC----chhhhhcCCCCCEEEccCCcCCcccCcccccccCCccc
Q 046050          235 LLLANNSLSGF--FQMPVNPLKQLTTIDVSKNFIQGHI----PTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL  308 (779)
Q Consensus       235 L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  308 (779)
                      +++.++.....  ....-.+++.|+++.++++.....-    -.........|..+.+++++...  ...++....|++|
T Consensus       351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNL  428 (483)
T ss_pred             hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCccc
Confidence            66666543211  1112235566777777665432010    00111124466777777776431  1222445566677


Q ss_pred             cEEEccCCc
Q 046050          309 QILALSNNS  317 (779)
Q Consensus       309 ~~L~ls~n~  317 (779)
                      +.+++-+++
T Consensus       429 eri~l~~~q  437 (483)
T KOG4341|consen  429 ERIELIDCQ  437 (483)
T ss_pred             ceeeeechh
Confidence            777777664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=5.8e-05  Score=69.18  Aligned_cols=131  Identities=19%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             hhhhhCCCCCCcEEeCCCCccc-cCC----CCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCccccc-C
Q 046050            7 LQSLWTPFPNLETLELRDYHLE-LLN----FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLC-E   80 (779)
Q Consensus         7 ~~~~~~~~~~L~~L~Ls~~~~~-~~~----l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~   80 (779)
                      .+.++..+. =+++||++..+. ..+    +.+...++|++|.+.  ..+.|..++.|.+|.+++|+|....|  .+. .
T Consensus        12 ~pqy~~~~~-e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p--~L~~~   86 (233)
T KOG1644|consen   12 APQYINSVR-ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDP--DLDTF   86 (233)
T ss_pred             chhhhhhcc-ccccccccccccchhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeecc--chhhh
Confidence            344444443 578899999883 333    446778999999875  34557788999999999999976655  344 4


Q ss_pred             CCCCcEEEccCcccccc-cChhccCCCCCCEEeCCCCcCcccCC---chhhcCCCCCCEEEcccccc
Q 046050           81 LVHLQELHIGYNNIGGT-LPWCLVNMTSLRILDIASNQITGNIS---SSPLRYLTSLEELRVSNNQF  143 (779)
Q Consensus        81 l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~i~---~~~~~~l~~L~~L~Ls~n~l  143 (779)
                      +++|+.|.|.+|+|... .-..+..||+|++|.+-+|.++ .-.   ...+..+++|+.||+..-.-
T Consensus        87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhhhhH
Confidence            78899999999988742 1234778999999999999987 322   22467899999999987654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00015  Score=75.61  Aligned_cols=57  Identities=14%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             hcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCc
Q 046050          398 LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYN  457 (779)
Q Consensus       398 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n  457 (779)
                      +..+.+++.|++++|.++.. |.  -..+|++|.++++.--...|..+...|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            44578888888888877733 42  13457777776643222223333333555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.50  E-value=0.0003  Score=62.68  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=51.7

Q ss_pred             cchhhhhCCCCCCcEEeCCCCcc-----ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCccccc
Q 046050            5 SLLQSLWTPFPNLETLELRDYHL-----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLC   79 (779)
Q Consensus         5 ~~~~~~~~~~~~L~~L~Ls~~~~-----~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   79 (779)
                      .+.+..|.++++|+.+.+...--     .+.++++|+.+.+..+ +......+|..++.++.+.+.+ .+. .++...+.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~   78 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFS   78 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTT
T ss_pred             EECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccc
Confidence            34566777777777777764211     3455556666666653 4444445566665666666654 221 22223455


Q ss_pred             CCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCC
Q 046050           80 ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL  133 (779)
Q Consensus        80 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  133 (779)
                      .+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            5666666666544 443444455555 666666554 333 4455455555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00046  Score=72.14  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             hhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCC-cCcccchhhHhhcceEE
Q 046050          374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN-KIEGQLEDVFGDILVTL  452 (779)
Q Consensus       374 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L  452 (779)
                      +..+.++..|++++|.++ .+|.   -..+|+.|.++++.-...+|+.+ ..+|+.|++++| .+...     +..|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL-----P~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL-----PESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc-----ccccceE
Confidence            455688999999999887 4452   23469999998755434555433 457999999988 55432     2337777


Q ss_pred             EccCccc
Q 046050          453 DLSYNRF  459 (779)
Q Consensus       453 ~L~~n~l  459 (779)
                      ++..+..
T Consensus       118 ~L~~n~~  124 (426)
T PRK15386        118 EIKGSAT  124 (426)
T ss_pred             EeCCCCC
Confidence            7765544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=8.3e-05  Score=84.49  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=110.6

Q ss_pred             ccccchhhhhCCCC--CCcEEeCCCCccc-------c-CCCCCccEEEccccccccc-cchhhcCCCCcCEEECCCCCCc
Q 046050            2 NVSSLLQSLWTPFP--NLETLELRDYHLE-------L-LNFTNLEVLILDGSALHIR-FLQSIAVLTSVKHLSMRNCYLY   70 (779)
Q Consensus         2 ~~~~~~~~~~~~~~--~L~~L~Ls~~~~~-------~-~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~   70 (779)
                      ||..++..++-+..  +|+.||++|...-       + .-+|.|++|.+++-.+... .-....++++|+.||+|+..+.
T Consensus       107 di~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  107 DIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             cHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            34455555544443  8999999996641       2 2589999999999776543 3345567899999999999885


Q ss_pred             ccCCcccccCCCCCcEEEccCccccc-ccChhccCCCCCCEEeCCCCcCcccCC---ch---hhcCCCCCCEEEcccccc
Q 046050           71 GTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRILDIASNQITGNIS---SS---PLRYLTSLEELRVSNNQF  143 (779)
Q Consensus        71 ~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~i~---~~---~~~~l~~L~~L~Ls~n~l  143 (779)
                      ..   .+++++++|++|.+.+=.+.. ..-..+-++++|++||+|..... .-+   ..   .-..||+|+.||.|++.+
T Consensus       187 nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  187 NL---SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             Cc---HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence            33   478999999999998777764 22335678999999999987654 222   10   123489999999999988


Q ss_pred             cccCCcccccCCCCCcEEE
Q 046050          144 QIPISFEPFFNHSKLKKFY  162 (779)
Q Consensus       144 ~~~~~~~~~~~l~~L~~L~  162 (779)
                      ...+-...+...++|+.+.
T Consensus       263 ~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  263 NEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             hHHHHHHHHHhCccHhhhh
Confidence            7655544555566666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.31  E-value=0.00091  Score=59.50  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             ccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcc
Q 046050           78 LCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS  139 (779)
Q Consensus        78 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls  139 (779)
                      |..+++|+.+.+.. .+......+|..+++|+.+.+.++ +. .++...|..+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence            33344444444432 233333334444444444444442 33 3333344444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00025  Score=68.16  Aligned_cols=105  Identities=22%  Similarity=0.303  Sum_probs=68.6

Q ss_pred             ccEEEccccc-cccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCc--ccccccChhccCCCCCCEE
Q 046050           35 LEVLILDGSA-LHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYN--NIGGTLPWCLVNMTSLRIL  111 (779)
Q Consensus        35 L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L  111 (779)
                      ++.+.+..+. ..+.+..-...+..|+.|++.+..++..   ..+-.+++|++|++|.|  ++++.++....++++|++|
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l   96 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL   96 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence            4444444332 2223334444566777788777766422   34667888888999888  6666666666777888888


Q ss_pred             eCCCCcCcc--cCCchhhcCCCCCCEEEccccccc
Q 046050          112 DIASNQITG--NISSSPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       112 ~Ls~n~i~~--~i~~~~~~~l~~L~~L~Ls~n~l~  144 (779)
                      ++++|+|..  +++  .+..+.+|..||+.+|..+
T Consensus        97 ~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             eecCCccccccccc--hhhhhcchhhhhcccCCcc
Confidence            888888861  222  2556677788888887654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.01  E-value=0.00033  Score=67.32  Aligned_cols=106  Identities=22%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             CCCCccEEEccccccccccchhhcCCCCcCEEECCCC--CCcccCCcccccCCCCCcEEEccCccccc-ccChhccCCCC
Q 046050           31 NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC--YLYGTSDFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTS  107 (779)
Q Consensus        31 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~  107 (779)
                      .+..|+.|.+.+..++.  ...+..+++|++|.++.|  ++.+.++. ...++++|++|++++|+|.. ..-..+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34566666666666542  234567789999999999  44444443 34456999999999998873 11123567788


Q ss_pred             CCEEeCCCCcCcccCCc---hhhcCCCCCCEEEccc
Q 046050          108 LRILDIASNQITGNISS---SPLRYLTSLEELRVSN  140 (779)
Q Consensus       108 L~~L~Ls~n~i~~~i~~---~~~~~l~~L~~L~Ls~  140 (779)
                      |..||+.+|..+. +..   ..|..+++|++||-..
T Consensus       118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence            9999999988773 322   2467789999887544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=6e-05  Score=72.31  Aligned_cols=101  Identities=25%  Similarity=0.208  Sum_probs=73.1

Q ss_pred             CCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCccccccc-ChhccCCCCCCE
Q 046050           32 FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTL-PWCLVNMTSLRI  110 (779)
Q Consensus        32 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~  110 (779)
                      +.+.+.|+..+|.++.+  ....+++.|++|.|+-|.|+...   .+..|++|++|.|..|.|.... -..+.++++|++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            55677788888887643  33457788899999999886443   4778889999999999887532 235688899999


Q ss_pred             EeCCCCcCcccCCc----hhhcCCCCCCEEE
Q 046050          111 LDIASNQITGNISS----SPLRYLTSLEELR  137 (779)
Q Consensus       111 L~Ls~n~i~~~i~~----~~~~~l~~L~~L~  137 (779)
                      |.|..|.-.|.-+.    ..+..|++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99988887654443    1456678888775

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.00034  Score=67.29  Aligned_cols=87  Identities=21%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             CCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchh-hhhcCCCCCE
Q 046050          205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTG-IGAFLPRLEH  283 (779)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~-~~~~l~~L~~  283 (779)
                      .+.+.|++.++.+. .|.  +...++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|. .+.+- ....+|+|+.
T Consensus        19 ~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45667777777776 333  245778888888888888765  45677788888888888876 44332 2233666777


Q ss_pred             EEccCCcCCcccCc
Q 046050          284 FNISRNVLNGSIPC  297 (779)
Q Consensus       284 L~l~~n~l~~~~~~  297 (779)
                      |.|..|+-.+..+.
T Consensus        93 LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQ  106 (388)
T ss_pred             HhhccCCcccccch
Confidence            77777665554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.98  E-value=0.0013  Score=73.55  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             CCCCcEEEccCcc-cccccChhccC-CCCCCEEeCCCCc-CcccCCchhhcCCCCCCEEEccccc
Q 046050           81 LVHLQELHIGYNN-IGGTLPWCLVN-MTSLRILDIASNQ-ITGNISSSPLRYLTSLEELRVSNNQ  142 (779)
Q Consensus        81 l~~L~~L~Ls~n~-i~~~~~~~~~~-l~~L~~L~Ls~n~-i~~~i~~~~~~~l~~L~~L~Ls~n~  142 (779)
                      +.+|+.|+++++. ++...-..+.. +++|++|.+.++. ++..--......+++|++|+++.+.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555555554 33322222222 5555555544444 3311111122334555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.31  E-value=0.0072  Score=34.51  Aligned_cols=12  Identities=50%  Similarity=0.639  Sum_probs=5.1

Q ss_pred             CcEEEcCCCcCC
Q 046050          604 IRALNLSHNNLM  615 (779)
Q Consensus       604 L~~L~Ls~N~l~  615 (779)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.07  E-value=0.0073  Score=34.47  Aligned_cols=16  Identities=31%  Similarity=0.661  Sum_probs=7.5

Q ss_pred             CcEEEccCCcCcccCCC
Q 046050          652 LAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       652 L~~L~ls~N~l~~~~p~  668 (779)
                      |++||+++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            444455555444 3443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.90  E-value=0.0052  Score=68.76  Aligned_cols=62  Identities=24%  Similarity=0.293  Sum_probs=26.0

Q ss_pred             CCCccEEEccCCC-CCcCCchhhhhcCCCCCEEEccCCc-CCcccCccc-ccccCCccccEEEccCCc
Q 046050          253 LKQLTTIDVSKNF-IQGHIPTGIGAFLPRLEHFNISRNV-LNGSIPCSL-HMTMGCFSLQILALSNNS  317 (779)
Q Consensus       253 l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~~~~L~~L~ls~n~  317 (779)
                      +++|+.++++.+. +++..-..+...+++|+.|.+.++. ++   ...+ ....+|+.|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt---~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT---DEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc---hhHHHHHHHhcCcccEEeeecCc
Confidence            3445555555444 3322222233334455555544443 22   1111 233344455555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.98  E-value=0.0092  Score=55.22  Aligned_cols=82  Identities=24%  Similarity=0.321  Sum_probs=55.3

Q ss_pred             CccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccC-CCCCcEEEccCc-ccccccChhccCCCCCCEE
Q 046050           34 NLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCE-LVHLQELHIGYN-NIGGTLPWCLVNMTSLRIL  111 (779)
Q Consensus        34 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L  111 (779)
                      .++.++-+++.|..+-.+.+..++.++.|.+.+|.-.+..-.+.++. .++|+.|++++| +|+...-..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45667777777777777778888888888888886433322222322 567888888877 6776656667777777777


Q ss_pred             eCCC
Q 046050          112 DIAS  115 (779)
Q Consensus       112 ~Ls~  115 (779)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.22  E-value=0.0011  Score=72.19  Aligned_cols=61  Identities=31%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             eeEEeccCCccCCC----CCccccCc-ccCcEEEcCCCcCCccCc----hhhhCCCCCCEEECCCCcCcC
Q 046050          580 MFGLDLSCNKLTGE----IPFQIGYL-NMIRALNLSHNNLMGTIP----STFSHLSQIESLDLSYNMLQG  640 (779)
Q Consensus       580 L~~LdLs~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~  640 (779)
                      +..++++.|++.+.    ..+.+..+ ..++.++++.|.|+..-.    ..+...++++.|.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44477777776632    22334444 566777777777764433    344556677777777777763

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.18  E-value=0.0033  Score=59.07  Aligned_cols=84  Identities=18%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS  656 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  656 (779)
                      ....+.||++.|++. ..-..|+-++.|..||+|.|++. ..|..++++..+..+++.+|..+ ..|-++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            356778999999987 55567788899999999999998 78888999999999999999988 7888999999999999


Q ss_pred             ccCCcCc
Q 046050          657 VAHNNLS  663 (779)
Q Consensus       657 ls~N~l~  663 (779)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.87  E-value=0.063  Score=28.33  Aligned_cols=13  Identities=46%  Similarity=0.848  Sum_probs=4.7

Q ss_pred             CCCEEeCCCCcCc
Q 046050          107 SLRILDIASNQIT  119 (779)
Q Consensus       107 ~L~~L~Ls~n~i~  119 (779)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.81  E-value=0.1  Score=31.17  Aligned_cols=23  Identities=26%  Similarity=0.621  Sum_probs=16.0

Q ss_pred             CCCCCEEeCCCCcCcccCCchhhc
Q 046050          105 MTSLRILDIASNQITGNISSSPLR  128 (779)
Q Consensus       105 l~~L~~L~Ls~n~i~~~i~~~~~~  128 (779)
                      +++|++|+|++|+|+ .+|.+.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            456777777777777 77765554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.81  E-value=0.1  Score=31.17  Aligned_cols=23  Identities=26%  Similarity=0.621  Sum_probs=16.0

Q ss_pred             CCCCCEEeCCCCcCcccCCchhhc
Q 046050          105 MTSLRILDIASNQITGNISSSPLR  128 (779)
Q Consensus       105 l~~L~~L~Ls~n~i~~~i~~~~~~  128 (779)
                      +++|++|+|++|+|+ .+|.+.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            456777777777777 77765554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.77  E-value=0.0057  Score=57.58  Aligned_cols=96  Identities=22%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             CccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050          588 NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       588 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      -.++...-..+......+.||++.|++. ..-..|+-++.|..||++.|++. ..|..+.++..+..+++..|..+ ..|
T Consensus        28 s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   28 SELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             HHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence            3444333356777889999999999987 45666888999999999999998 88999999999999999999998 677


Q ss_pred             CCCCcCCCCCCCcccCCCC
Q 046050          668 DRVGQFATFTENSYDGNSL  686 (779)
Q Consensus       668 ~~~~~~~~l~~~~~~~N~~  686 (779)
                      -++++.+.......-+||.
T Consensus       105 ~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccccccCCcchhhhccCcc
Confidence            7788998888887777774

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.53  E-value=0.12  Score=27.25  Aligned_cols=11  Identities=55%  Similarity=0.902  Sum_probs=3.3

Q ss_pred             CcEEEcCCCcC
Q 046050          604 IRALNLSHNNL  614 (779)
Q Consensus       604 L~~L~Ls~N~l  614 (779)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.74  E-value=0.23  Score=29.61  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=7.6

Q ss_pred             CCCCEEECCCCcCc
Q 046050          626 SQIESLDLSYNMLQ  639 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~  639 (779)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.74  E-value=0.23  Score=29.61  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=7.6

Q ss_pred             CCCCEEECCCCcCc
Q 046050          626 SQIESLDLSYNMLQ  639 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~  639 (779)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.62  E-value=0.0037  Score=68.15  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             ccEEEccCCCCCcCCchhhhh---cCCCCCEEEccCCcCC
Q 046050          256 LTTIDVSKNFIQGHIPTGIGA---FLPRLEHFNISRNVLN  292 (779)
Q Consensus       256 L~~L~Ls~n~l~~~i~~~~~~---~l~~L~~L~l~~n~l~  292 (779)
                      +..+.+.+|.+.......+..   ..+.|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            666677777665333222222   1345555666666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.65  E-value=0.21  Score=29.09  Aligned_cols=14  Identities=43%  Similarity=0.669  Sum_probs=5.7

Q ss_pred             CCCCEEECCCCcCc
Q 046050          626 SQIESLDLSYNMLQ  639 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~  639 (779)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444555555444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.63  E-value=0.19  Score=29.21  Aligned_cols=15  Identities=27%  Similarity=0.417  Sum_probs=6.4

Q ss_pred             CCCcEEEccCccccc
Q 046050           82 VHLQELHIGYNNIGG   96 (779)
Q Consensus        82 ~~L~~L~Ls~n~i~~   96 (779)
                      ++|++|+|++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	779
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-42
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-42
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 184/654 (28%), Positives = 279/654 (42%), Gaps = 97/654 (14%)
Query: 59  VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQI 118
           +KHL++    + G  D   +   V+L+ L +  NN    +P+ L + ++L+ LDI+ N++
Sbjct: 177 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 119 TGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLT 178
           +G+ S + +   T L+ L +S+NQF  PI   P      L+     +N+   EI      
Sbjct: 233 SGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSG 288
Query: 179 PKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXX 238
               L  + LSG       P F      L  + LS  N  GE P                
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------------- 332
Query: 239 XXSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCS 298
              +    +M     + L  +D+S N   G +P  +      L   ++S N  +G I  +
Sbjct: 333 ---MDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 299 LHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXX 358
           L       +LQ L L NN   G I     N + LV+L L  N                  
Sbjct: 385 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN------------------ 425
Query: 359 XXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
                 ++SG IP  LG+LS L D+ +  N LEG IP  L  +  L  L L+ N+++G +
Sbjct: 426 ------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
           PS  S+   T ++                    + LS NR +G IP WI +L +L+ L L
Sbjct: 480 PSGLSN--CTNLNW-------------------ISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 479 ANNNLEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALG-EGNYDSAAP---TSEG 534
           +NN+  G +P              + N  +GTIP+ ++K +     N+ +          
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN----TSYYYQGRILKI------MFGLD 584
                   AG  +   G   +R E+     T+N    TS  Y G           M  LD
Sbjct: 579 GMKKECHGAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 585 LSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
           +S N L+G IP +IG +  +  LNL HN++ G+IP     L  +  LDLS N L G+IP 
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 645 QLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYP 698
            +  L  L    +++NNLSG +P+ +GQF TF    +  N  LCG PL   C P
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CDP 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 184/654 (28%), Positives = 279/654 (42%), Gaps = 97/654 (14%)
Query: 59  VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQI 118
           +KHL++    + G  D   +   V+L+ L +  NN    +P+ L + ++L+ LDI+ N++
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 119 TGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLT 178
           +G+ S + +   T L+ L +S+NQF  PI   P      L+     +N+   EI      
Sbjct: 236 SGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSG 291
Query: 179 PKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPXXXXXXXXXXXXXXXX 238
               L  + LSG       P F      L  + LS  N  GE P                
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------------- 335
Query: 239 XXSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCS 298
              +    +M     + L  +D+S N   G +P  +      L   ++S N  +G I  +
Sbjct: 336 ---MDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 299 LHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEXXXXXXXXXX 358
           L       +LQ L L NN   G I     N + LV+L L  N                  
Sbjct: 388 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN------------------ 428
Query: 359 XXXXDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
                 ++SG IP  LG+LS L D+ +  N LEG IP  L  +  L  L L+ N+++G +
Sbjct: 429 ------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
           PS  S+   T ++                    + LS NR +G IP WI +L +L+ L L
Sbjct: 483 PSGLSN--CTNLNW-------------------ISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 479 ANNNLEGEVPVXXXXXXXXXXXXXSHNNLSGTIPSCLYKTALG-EGNYDSAAP---TSEG 534
           +NN+  G +P              + N  +GTIP+ ++K +     N+ +          
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN----TSYYYQGRILKI------MFGLD 584
                   AG  +   G   +R E+     T+N    TS  Y G           M  LD
Sbjct: 582 GMKKECHGAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 585 LSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
           +S N L+G IP +IG +  +  LNL HN++ G+IP     L  +  LDLS N L G+IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 645 QLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYP 698
            +  L  L    +++NNLSG +P+ +GQF TF    +  N  LCG PL   C P
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CDP 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 118/308 (38%), Gaps = 73/308 (23%)
Query: 393 PIPANLCKLNFLTVLDLE-VNNISGSLPSCFSSWLLTQVH---LSRNKIEGQLEDVFGDI 448
           PIP++L  L +L  L +  +NN+ G +P   +   LTQ+H   ++   + G + D    I
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 449 --LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVXXXXXXXX-XXXXXSHN 505
             LVTLD SYN  SG +P  I  L +L  +    N + G +P               S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 506 NLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRT 565
            L+G IP       L                         A      + +  + SV F +
Sbjct: 185 RLTGKIPPTFANLNL-------------------------AFVDLSRNMLEGDASVLFGS 219
Query: 566 -KNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624
            KNT   +   + K     DL           ++G    +  L+L +N + GT+P   + 
Sbjct: 220 DKNTQKIH---LAKNSLAFDLG----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGN 684
           L  + SL++S+N L G+IP                         + G    F  ++Y  N
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-------------------------QGGNLQRFDVSAYANN 301
Query: 685 SLLCGQPL 692
             LCG PL
Sbjct: 302 KCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	779
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-159
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  481 bits (1240), Expect = e-159
 Identities = 200/720 (27%), Positives = 314/720 (43%), Gaps = 65/720 (9%)

Query: 14  FPNLETLELRDYHL-----ELLNFTNLEVLILDGSALH--IRFLQSIAVLTSVKHLSMRN 66
              LE+L L + H+           +L  L L  ++L   +  L S+   + +K L++ +
Sbjct: 76  LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 67  CYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLV---NMTSLRILDIASNQITGNIS 123
             L       G  +L  L+ L +  N+I G      V       L+ L I+ N+I+G++ 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV- 194

Query: 124 SSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQL 183
              +    +LE L VS+N F   I F    + S L+                       +
Sbjct: 195 --DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLD--------------------I 230

Query: 184 QNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS 243
               LSG      F R +    EL+ +++S     G  P   L++   L+ L LA N  +
Sbjct: 231 SGNKLSG-----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFT 282

Query: 244 GFFQMPV-NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMT 302
           G     +      LT +D+S N   G +P   G+    LE   +S N  +G +P    + 
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLK 341

Query: 303 MGCFSLQILALSNNSLQGHIFSRSFNLT-NLVTLQLDANQFTGGIPENLLNCSL--LGGL 359
           M    L++L LS N   G +     NL+ +L+TL L +N F+G I  NL       L  L
Sbjct: 342 MR--GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419
           YL +N  +GKIP  L N S LV + +  N+L G IP++L  L+ L  L L +N + G +P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 420 SCFSSW-LLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYL 476
                   L  + L  N + G++     +   L  + LS NR +G IP WI +L +L+ L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 477 ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYK--TALGEGNYDSAAPTSEG 534
            L+NN+  G +P +L   + L  +DL+ N  +GTIP+ ++K    +              
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579

Query: 535 N-------YGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYY--YQGRILKIMFGLDL 585
           N       +GA +    + +     + +         ++    +          M  LD+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 586 SCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQ 645
           S N L+G IP +IG +  +  LNL HN++ G+IP     L  +  LDLS N L G+IP  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 646 LVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSPNVS 705
           +  L  L    +++NNLSG +P+  GQF TF    +  N  LCG PL      N      
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (838), Expect = e-100
 Identities = 132/518 (25%), Positives = 208/518 (40%), Gaps = 25/518 (4%)

Query: 9   SLWTPFPNLETLELRDYHLE---------LLNFTNLEVLILDGSALHIRFLQSIAVLTSV 59
           S      +LE L+L    +                L+ L + G+ +       ++   ++
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNL 202

Query: 60  KHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQIT 119
           + L + +           L +   LQ L I  N + G     +   T L++L+I+SNQ  
Sbjct: 203 EFLDVSSNNFSTG--IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 120 GNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP 179
           G I   PL    SL+ L ++ N+F   I          L       N  +  +       
Sbjct: 261 GPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGS 316

Query: 180 KFQLQNISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLA 238
              L++++LS        P   L     L+ +DLS     GE P  L   +  L TL L+
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 239 NNSLSGFF--QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIP 296
           +N+ SG     +  NP   L  + +  N   G IP  +      L   ++S N L+G+IP
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIP 435

Query: 297 CSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLL 356
            SL        L+ L L  N L+G I      +  L TL LD N  TG IP  L NC+ L
Sbjct: 436 SSL---GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISG 416
             + LS+N ++G+IPKW+G L NL  + + NN   G IPA L     L  LDL  N  +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 417 SLPSCFSS-WLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSY 475
           ++P+           +    K    +++           +   F G     +++LS  + 
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 476 LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
             + +    G           +  +D+S+N LSG IP 
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  236 bits (604), Expect = 3e-67
 Identities = 102/347 (29%), Positives = 152/347 (43%), Gaps = 17/347 (4%)

Query: 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS 241
            L +  L+           L     L  + LS+ ++ G       + +  L +L L+ NS
Sbjct: 56  DLSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNS 111

Query: 242 LSGFFQMPVN--PLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
           LSG      +      L  ++VS N +        G  L  LE  ++S N ++G+     
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359
            ++ GC  L+ LA+S N + G +        NL  L + +N F+ GIP  L +CS L  L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228

Query: 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419
            +S N +SG   + +   + L  + + +N   GPIP     L  L  L L  N  +G +P
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286

Query: 420 SCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSHLS 474
              S     LT + LS N   G +   FG    L +L LS N FSG +P + + K+  L 
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 475 YLILANNNLEGEVPVQLC-LLKQLQLIDLSHNNLSGTIPSCLYKTAL 520
            L L+ N   GE+P  L  L   L  +DLS NN SG I   L +   
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 4e-11
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 582 GLDLSCNKLT---GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
            +DLS   L      +   +  L  + +L LS++++ G++   F   + + SLDLS N L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 639 QGKIPT--QLVELYALAIFSVAHNNLSGKVP 667
            G + T   L     L   +V+ N L     
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 606 ALNLSHNNL---MGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662
           +++LS   L      + S+   L+ +ESL LS + + G +        +L    ++ N+L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 663 SGKVPD 668
           SG V  
Sbjct: 113 SGPVTT 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (668), Expect = 6e-77
 Identities = 134/711 (18%), Positives = 238/711 (33%), Gaps = 92/711 (12%)

Query: 16  NLETLELRDYHLELL---NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGT 72
           + E  +     L  +     TN+ VL L  + L      +    + +  L +    +   
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
              +   +L  L+ L++ +N +           T+L  L + SN I   I ++P     +
Sbjct: 65  EP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKN 122

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL-FVEIESHSLTPKFQLQNISLSGC 191
           L  L +S+N                L++     N++  ++ E   +     L+ + LS  
Sbjct: 123 LITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 192 RCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLE--NNKELETLLLANNSLSGFFQMP 249
           +     P   +    L  + L+++ L       L     N  +  L L+N+ LS      
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 250 VNPLK--QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFS 307
              LK   LT +D+S N +          +LP+LE+F +  N +      SLH   G F+
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLH---GLFN 297

Query: 308 LQILALSNNSLQGHIFSRSF---------NLTNLVTLQLDANQFTGGIPENLLNCSLLGG 358
           ++ L L  +  +  I   S           L  L  L ++ N   G           L  
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

Query: 359 LYLSDNHISGK--IPKWLGNL--SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
           L LS++  S +    +   +L  S L  + +  N +          L  L VLDL +N I
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 415 SGSLP-SCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSG--RIPNWID 468
              L    +     + +++LS NK      + F  +  L  L L           P+   
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA 528
            L +L+ L L+NNN+       L  L++L+++DL HNNL                     
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--------------------- 516

Query: 529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN 588
                                           +          Y  + L  +  L+L  N
Sbjct: 517 ------------------------------ARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL-V 647
                       L  ++ ++L  NNL     S F++   ++SL+L  N++          
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 648 ELYALAIFSVAHNNLSGKVPDRVGQFATFTENS-----YDGNSLLCGQPLS 693
               L    +  N       + +  F  +   +        +  LC  P  
Sbjct: 607 AFRNLTELDMRFNPFDC-TCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (556), Expect = 3e-61
 Identities = 102/549 (18%), Positives = 189/549 (34%), Gaps = 42/549 (7%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLE------LLNFTNLEVLILDGSALHIRFLQSIAV 55
            +S L    +    NL  L L    ++       +   NL  L L  + L    L +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 56  LTSVKHLSMRNCYL-YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIA 114
           L +++ L + N  +    S+   +     L++L +  N I    P C   +  L  L + 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 115 SNQITGNISSSPLR--YLTSLEELRVSNNQFQ--IPISFEPFFNHSKLKKFYGQKNRLFV 170
           + Q+  +++         TS+  L +SN+Q       +F      + L       N L  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLN- 261

Query: 171 EIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRG--------EFP 222
            + + S     QL+   L        F   L+    +RY++L     +         +  
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 223 NWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTG---IGAFLP 279
           ++  +  K LE L + +N + G        L  L  + +S +F      T    +     
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLD 338
            L   N+++N ++     +         L++L L  N +   +  + +  L N+  + L 
Sbjct: 382 PLHILNLTKNKISKIESDAFS---WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 339 ANQFTGGIPENLLNCSLLGGLYLSDNHISG--KIPKWLGNLSNLVDIIMPNNHLEGPIPA 396
            N++      +      L  L L    +      P     L NL  + + NN++      
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 397 NLCKLNFLTVLDLEVNNISGSLPSCFSSWL---------LTQVHLSRNKIEGQLEDVFGD 447
            L  L  L +LDL+ NN++                    L  ++L  N  +    +VF D
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 448 I--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLSH 504
           +  L  +DL  N  +    +  +    L  L L  N +            + L  +D+  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 505 NNLSGTIPS 513
           N    T  S
Sbjct: 619 NPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (551), Expect = 2e-60
 Identities = 110/537 (20%), Positives = 187/537 (34%), Gaps = 39/537 (7%)

Query: 14  FPNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             N+  L L    L          ++ L  L +  + +     +    L  +K L++++ 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            L   SD +      +L ELH+  N+I        V   +L  LD++ N ++        
Sbjct: 84  ELSQLSD-KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 141

Query: 128 RYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNI 186
             L +L+EL +SNN+ Q +       F +S LKK     N++  E          +L  +
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGL 200

Query: 187 SLSGCRCDFTFPRFLYYQH---ELRYVDLSHMNLRGEFPNWLLE-NNKELETLLLANNSL 242
            L+  +   +    L  +     +R + LS+  L        L      L  L L+ N+L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 243 SGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC----- 297
           +         L QL    +  N IQ      +   L  + + N+ R+    SI       
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPK 319

Query: 298 -SLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL----LN 352
                      L+ L + +N + G   +    L NL  L L  +  +     N     L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 353 CSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEV 411
            S L  L L+ N IS         L +L  + +  N +   +       L  +  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 412 NNISGSLPSCFSS-WLLTQVHLSRNKIEG--QLEDVFGDI--LVTLDLSYNRFSGRIPNW 466
           N       + F+    L ++ L R  ++        F  +  L  LDLS N  +    + 
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 467 IDKLSHLSYLILANNNLE--------GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
           ++ L  L  L L +NNL         G     L  L  L +++L  N          
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (435), Expect = 6e-45
 Identities = 77/422 (18%), Positives = 144/422 (34%), Gaps = 36/422 (8%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
            S  + D +       ++  P    T++  L +++NQ +  +    F  +S+L       
Sbjct: 4   VSHEVADCSHL----KLTQVPDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGF 58

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N +  ++E         L+ ++L          +   +   L  + L   +++    N  
Sbjct: 59  NTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-P 116

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF-LPRLEHF 284
               K L TL L++N LS         L+ L  + +S N IQ      +  F    L+  
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI---FSRSFNLTNLVTLQLDANQ 341
            +S N +    P   H       L  L L+N  L   +          T++  L L  +Q
Sbjct: 177 ELSSNQIKEFSPGCFH---AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 342 FTGGIPENLLNCSL--LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC 399
            +       L      L  L LS N+++         L  L    +  N+++     +L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 400 KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYN 457
            L  +  L+L+ +               T+  +S   +    +  F  +  L  L++  N
Sbjct: 294 GLFNVRYLNLKRS--------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 458 RFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL----LKQLQLIDLSHNNLSGTIPS 513
              G   N    L +L YL L+N+                   L +++L+ N +S     
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 514 CL 515
             
Sbjct: 400 AF 401

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (529), Expect = 4e-58
 Identities = 91/527 (17%), Positives = 175/527 (33%), Gaps = 40/527 (7%)

Query: 14  FPNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             + + L+L    L         +F  L+VL L    +      +   L+ +  L +   
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            +   +       L  LQ+L     N+     + + ++ +L+ L++A N I         
Sbjct: 87  PIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 128 RYLTSLEELRVSNNQFQ--IPISFEPFFN-HSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
             LT+LE L +S+N+ Q                        N +   I+  +   + +L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIRLH 203

Query: 185 NISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRG-----EFPNWLLENNKELETLLLA 238
            ++L          +  +     L    L     R      +F    LE    L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 239 NNSLSGFFQMPV---NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295
              L  +    +   N L  +++  +    I+        ++    +H  +         
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP 320

Query: 296 PCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ--FTGGIPENLLNC 353
              L          +  L+  S +G       +L +L  L L  N   F G   ++    
Sbjct: 321 TLKL--------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVN 412
           + L  L LS N +   +      L  L  +   +++L+     +    L  L  LD+   
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 413 NISGSLPSCFSS-WLLTQVHLSRNKIEGQL-EDVFGDI--LVTLDLSYNRFSGRIPNWID 468
           +   +    F+    L  + ++ N  +     D+F ++  L  LDLS  +     P   +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
            LS L  L +++NN           L  LQ++D S N++  +    L
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  198 bits (506), Expect = 7e-55
 Identities = 98/527 (18%), Positives = 172/527 (32%), Gaps = 39/527 (7%)

Query: 15  PNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
            +L TL L    ++ L        ++L+ L+   + L       I  L ++K L++ +  
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI----LDIASNQITGNISS 124
           +      +    L +L+ L +  N I       L  +  + +    LD++ N +   I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL-----FVEIESHSLTP 179
              +    L +L + NN   + +        + L+                + +  +L  
Sbjct: 195 GAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 180 KFQLQNISLSGCRCDFTF---PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
              L          D+              +    L  + +           N   + L 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLE 310

Query: 237 LANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIP 296
           L N     F   P   LK L  +  + N             LP LE  ++SRN L+    
Sbjct: 311 LVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGC 364

Query: 297 CSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLL-NCSL 355
           CS     G  SL+ L LS N +   + S    L  L  L    +        ++  +   
Sbjct: 365 CSQSD-FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNI 414
           L  L +S  H           LS+L  + M  N  +     +   +L  LT LDL    +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 415 SGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKL- 470
               P+ F+S   L  +++S N         +  +  L  LD S N         +    
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 471 SHLSYLILANNNLEGEVPVQ--LCLLKQLQLIDLSHNNLSGTIPSCL 515
           S L++L L  N+       Q  L  +K  + + +    +    PS  
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (449), Expect = 3e-47
 Identities = 84/530 (15%), Positives = 186/530 (35%), Gaps = 72/530 (13%)

Query: 15  PNLETLELRDYHL------ELLNFTNLEVLILDGSALH-IRFLQSIAVLTSVKHLSMRNC 67
            +L+ L   + +L       + +   L+ L +  + +   +  +  + LT+++HL + + 
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 68  YLYG--TSDFQGLCEL-VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISS 124
            +     +D + L ++ +    L +  N +    P     +  L  L + +N  + N+  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHS-------KLKKFYGQKNRLFVEIESHSL 177
           + ++ L  LE  R+   +F+   + E F   +        +++F       +++      
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 178 TPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLL 237
                + + SL          +   Y    ++++L +    G+FP   L++ K L     
Sbjct: 279 NCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSN 335

Query: 238 ANNSLSGFFQMP---------------------VNPLKQLTTIDVSKNFIQGHIPTGIGA 276
              +      +P                           L  +D+S N +   + +    
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 277 FLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQ 336
            L +LEH +   + L      S+   +   +L  L +S+   +         L++L  L+
Sbjct: 395 -LEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 337 LDANQFTGGIPENLL-NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP 395
           +  N F      ++      L  L LS   +    P    +LS+L  + M +N+      
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 396 ANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLS 455
                LN L VLD  +N+I  S             H   +             L  L+L+
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQ-------HFPSS-------------LAFLNLT 551

Query: 456 YNRFSGRIPN--WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
            N F+    +  ++  +     L++    +E   P      + + ++ L+
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD---KQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (399), Expect = 9e-41
 Identities = 78/458 (17%), Positives = 147/458 (32%), Gaps = 43/458 (9%)

Query: 231 ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNV 290
           E+   +        F+++P N       +D+S N ++           P L+  ++SR  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCE 63

Query: 291 LNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL 350
           +      +         L  L L+ N +Q         L++L  L              +
Sbjct: 64  IQTIEDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 351 LNCSLLGGLYLSDNHI-SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTV--- 406
            +   L  L ++ N I S K+P++  NL+NL  + + +N ++     +L  L+ + +   
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 407 -LDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTL---DLSYNRFSGR 462
            LDL +N ++   P  F    L ++ L  N     +       L  L    L    F   
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 463 I---PNWIDKLSHLSYLILANNNLE------GEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
                     L  L  L +    L        ++      L  +    L    +   +  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD 299

Query: 514 CLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ 573
             Y          +                          ++++      +  N      
Sbjct: 300 FSYNFGWQHLELVNCKFGQ--------------FPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 574 GRILKIMFGLDLSCNKLT--GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL 631
              L+    LDLS N L+  G           ++ L+LS N ++ T+ S F  L Q+E L
Sbjct: 346 LPSLEF---LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 632 DLSYNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD 668
           D  ++ L+        + L  L    ++H +       
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (290), Expect = 7e-27
 Identities = 56/376 (14%), Positives = 110/376 (29%), Gaps = 68/376 (18%)

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
            +   L L  N        +  +   L  L LS   I         +LS+L  +I+  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDIL 449
           ++         L+ L  L     N++               HL                L
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-------HLKT--------------L 126

Query: 450 VTLDLSYNRF-SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQL----IDLSH 504
             L++++N   S ++P +   L++L +L L++N ++      L +L Q+ L    +DLS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 505 NNLSGTIPSCLYKTALGE----GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEES 560
           N ++   P    +  L +     N+DS         G +                     
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL------------------- 227

Query: 561 VEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNL---MGT 617
                          + +++ G   +   L       +  L  +         L   +  
Sbjct: 228 --------------EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 618 IPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFT 677
           I   F+ L+ + S  L    ++          +      + +         ++      T
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 678 ENSYDGNSLLCGQPLS 693
             S  G +      L 
Sbjct: 332 FTSNKGGNAFSEVDLP 347

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 9e-14
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDLS  +L    P     L+ ++ LN+SHNN        +  L+ ++ LD S N +    
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 643 PTQLVEL-YALAIFSVAHNNLSG 664
             +L     +LA  ++  N+ + 
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 583 LDLSCNKLTGEI-PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L ++ N       P     L  +  L+LS   L    P+ F+ LS ++ L++S+N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPD 668
                  L +L +   + N++      
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LD   + L     F +   L  +  L++SH +        F+ LS +E L ++ N  Q  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 642 I-PTQLVELYALAIFSVAHNNLSGKVPD 668
             P    EL  L    ++   L    P 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  197 bits (503), Expect = 2e-57
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG--HIFSRSFNLTNLVTLQL-DANQ 341
           +       G +  +       + +  L LS  +L     I S   NL  L  L +   N 
Sbjct: 32  DCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 342 FTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKL 401
             G IP  +   + L  LY++  ++SG IP +L  +  LV +    N L G +P ++  L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 402 NFLTVLDLEVNNISGSLPSCFSSW--LLTQVHLSRNKIEGQLEDVFGDI-LVTLDLSYNR 458
             L  +  + N ISG++P  + S+  L T + +SRN++ G++   F ++ L  +DLS N 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
             G          +   + LA N+L  ++  ++ L K L  +DL +N + GT+P  L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  192 bits (490), Expect = 2e-55
 Identities = 72/261 (27%), Positives = 110/261 (42%), Gaps = 7/261 (2%)

Query: 257 TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN- 315
            T D       G +         R+ + ++S   L    P    +      L  L +   
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGI 86

Query: 316 NSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLG 375
           N+L G I      LT L  L +     +G IP+ L     L  L  S N +SG +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 376 NLSNLVDIIMPNNHLEGPIPANLCKL-NFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSR 434
           +L NLV I    N + G IP +        T + +  N ++G +P  F++  L  V LSR
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206

Query: 435 NKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC 492
           N +EG    +FG       + L+ N  +  +   +    +L+ L L NN + G +P  L 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 493 LLKQLQLIDLSHNNLSGTIPS 513
            LK L  +++S NNL G IP 
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 1e-41
 Identities = 77/341 (22%), Positives = 112/341 (32%), Gaps = 65/341 (19%)

Query: 87  LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSP-LRYLTSLEELRVSN-NQF- 143
                    G L         +  LD++   +         L  L  L  L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 144 -QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202
             IP +       +KL +                                          
Sbjct: 91  GPIPPAI------AKLTQ------------------------------------------ 102

Query: 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVS 262
               L Y+ ++H N+ G  P++L    K L TL  + N+LSG     ++ L  L  I   
Sbjct: 103 ----LHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 263 KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI 322
            N I G IP   G+F        ISRN L G IP +        +L  + LS N L+G  
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----ANLNLAFVDLSRNMLEGDA 213

Query: 323 FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVD 382
                +  N   + L  N     + + +     L GL L +N I G +P+ L  L  L  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 383 IIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI--SGSLPSC 421
           + +  N+L G IP     L    V     N       LP+C
Sbjct: 273 LNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 6e-40
 Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 26/209 (12%)

Query: 313 LSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG--GIPENLLNCSLLGGLYLSD-NHISGK 369
             N +  G +         +  L L          IP +L N   L  LY+   N++ G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 370 IPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQ 429
           IP  +  L+ L  + + + ++ G IP  L ++  L  LD   N +SG+LP   SS  L  
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS--LPN 150

Query: 430 VHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLS-YLILANNNLEGEVP 488
                              LV +    NR SG IP+     S L   + ++ N L G++P
Sbjct: 151 -------------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 489 VQLCLLKQLQLIDLSHNNLSGTIPSCLYK 517
                L  L  +DLS N L G        
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  122 bits (308), Expect = 8e-31
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 11/181 (6%)

Query: 346 IPENLLNCSLL----GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG--PIPANLC 399
           I ++L N + L          +    G +         + ++ +   +L    PIP++L 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 400 KLNFLTVLDL-EVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLS 455
            L +L  L +  +NN+ G +P   +    L  ++++   + G + D    I  LVTLD S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 456 YNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL-QLIDLSHNNLSGTIPSC 514
           YN  SG +P  I  L +L  +    N + G +P       +L   + +S N L+G IP  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 515 L 515
            
Sbjct: 194 F 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  117 bits (296), Expect = 3e-29
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           +DLS N L G+     G     + ++L+ N+L   +         +  LDL  N + G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESC 696
           P  L +L  L   +V+ NNL G++P   G    F  ++Y  N  LCG PL  +C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-AC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (256), Expect = 6e-24
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 80/317 (25%)

Query: 16  NLETLELRDYHL--------ELLNFTNLEVLILDGS-ALHIRFLQSIAVLTSVKHLSMRN 66
            +  L+L   +L         L N   L  L + G   L      +IA LT + +L + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 67  CYLYGT--SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISS 124
             + G        L ++  L  L   YN + GTLP  + ++ +L  +    N+I+G I  
Sbjct: 111 TNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 125 SPLRYLTSL-EELRVSNNQF--QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKF 181
           S     + L   + +S N+   +IP +                                 
Sbjct: 168 S-YGSFSKLFTSMTISRNRLTGKIPPT--------------------------------- 193

Query: 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS 241
              N++L+                   +VDLS   L G+       ++K  + + LA NS
Sbjct: 194 -FANLNLA-------------------FVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNS 232

Query: 242 LSGFFQMP-VNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLH 300
           L+    +  V   K L  +D+  N I G +P G+   L  L   N+S N L G IP   +
Sbjct: 233 LAF--DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQGGN 289

Query: 301 MTMGCFSLQILALSNNS 317
           +        + A +NN 
Sbjct: 290 LQ----RFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.3 bits (225), Expect = 7e-20
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 583 LDLS-CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L +   N L G IP  I  L  +  L ++H N+ G IP   S +  + +LD SYN L G 
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQF 673
           +P  +  L  L   +   N +SG +PD  G F
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.1 bits (222), Expect = 2e-19
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L ++   ++G IP  +  +  +  L+ S+N L GT+P + S L  +  +    N + G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 643 PTQLVELYALAIF-SVAHNNLSGKVPDRVGQ 672
           P        L    +++ N L+GK+P     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.5 bits (210), Expect = 6e-18
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQ-IESLDLSY 635
           +K +  LD S N L+G +P  I  L  +  +    N + G IP ++   S+   S+ +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 636 NMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           N L GKIP     L  LA   ++ N L G      G 
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGT--IPSTFSHLSQIESLDLS-YNML 638
             D       G +         +  L+LS  NL     IPS+ ++L  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 639 QGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
            G IP  + +L  L    + H N+SG +PD + Q
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 451 TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE--VPVQLCLLKQLQLIDLSH-NNL 507
           T D     + G + +   +   ++ L L+  NL     +P  L  L  L  + +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 508 SGTIPSCLYK 517
            G IP  + K
Sbjct: 90  VGPIPPAIAK 99

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  197 bits (504), Expect = 1e-54
 Identities = 95/521 (18%), Positives = 166/521 (31%), Gaps = 28/521 (5%)

Query: 14  FPNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             + E LE     L            NL  L L    ++     +      +  L +   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            L   ++   L     L+ L      I       L N  +L  L + SN I+ +I     
Sbjct: 92  PLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKG 149

Query: 128 RYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
                L+ L   NN     +S E   +  +        N   +             Q+++
Sbjct: 150 FPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 188 LSGCRCDFTFPRFLYYQH--ELRYVDLSHMNLRGEFPNWLLEN-NKELETLLLANNSLSG 244
             G +      + L       L       M+     P          +E++ L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 245 FFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMG 304
                 +    L  +D++   +   +P+G+   L  L+   +S N        S      
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISAS---N 323

Query: 305 CFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFT--GGIPENLLNCSLLGGLYL 361
             SL  L++  N+ +  + +    NL NL  L L  +           L N S L  L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 362 SDNHISGKIPKWLGNLSNLVDIIMPNNHLEG-PIPANLCKLNFLTVLDLEVNNISGSLPS 420
           S N       +       L  + +    L+     +    L+ L VL+L  + +  S   
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 421 CFSSWL-LTQVHLSRNKIEGQLEDVFGDI-----LVTLDLSYNRFSGRIPNWIDKLSHLS 474
            F     L  ++L  N            +     L  L LS+   S    +    L  ++
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
           ++ L++N L       L  LK + L +L+ N++S  +PS L
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (440), Expect = 5e-46
 Identities = 92/511 (18%), Positives = 169/511 (33%), Gaps = 44/511 (8%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             NL  L+L    +  +      +   L+ L+L  + L      +++   ++KHL     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            +        L     L+ L++G N+I             L++LD  +N I   +S   +
Sbjct: 116 GISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDM 173

Query: 128 RYLTSLE--ELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQN 185
             L       L ++ N     I    F +       +G    L V  +    +    L  
Sbjct: 174 SSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 186 ISLSGCRCDFTFPRFLY--YQHELRYVDLSHMNLRGEFPNWL----------LENNK--- 230
            +      +   P       +  +  ++L          N            L       
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292

Query: 231 ---------ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRL 281
                     L+ L+L+ N      Q+  +    LT + +  N  +  + TG    L  L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 282 EHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDAN 340
              ++S + +  +  C          LQ L LS N     + + +F     L  L L   
Sbjct: 353 RELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFT 410

Query: 341 QFTGGIPENLL-NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI---PA 396
           +      ++   N  LL  L LS + +     +    L  L  + +  NH          
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 397 NLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI-LVTLDL 454
           +L  L  L +L L   ++S      F+S   +  V LS N++     +    +  + L+L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530

Query: 455 SYNRFSGRIPNWIDKLSHLSYLILANNNLEG 485
           + N  S  +P+ +  LS    + L  N L+ 
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (407), Expect = 9e-42
 Identities = 85/478 (17%), Positives = 169/478 (35%), Gaps = 37/478 (7%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQ-SIA 54
           ++SS+      P   L+ L+ ++  +  L      +      L L+ +   I  ++    
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 55  VLTSVKHLSMRNCYLYGTSDFQGL--CELVHLQELHIGYNNIGGTLPWCLVNM--TSLRI 110
                + L+           F+GL    +  L        +     P     +   S+  
Sbjct: 200 DSAVFQSLNFGGTQNLLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 111 LDIASNQITGNISSSPLRYLTSLEELRVSNNQF-QIPISFEPFFNHSKLKKFYGQKNRLF 169
           +++  +     ISS+     + L+EL ++     ++P         S LKK     N+  
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANKF- 313

Query: 170 VEIESHSLTPKFQLQNISLSGCRCDFT-FPRFLYYQHELRYVDLSHMNLRG-EFPNWLLE 227
             +   S +    L ++S+ G           L     LR +DLSH ++   +  N  L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 228 NNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNIS 287
           N   L++L L+ N              QL  +D++   ++          L  L+  N+S
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 288 RNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF---NLTNLVTLQLDANQFTG 344
            ++L+ S         G  +LQ L L  N        ++     L  L  L L     + 
Sbjct: 434 HSLLDISSEQLFD---GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFL 404
                  +  ++  + LS N ++    + L +L  +  + + +NH+   +P+ L  L+  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQ 549

Query: 405 TVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG-------QLEDVFGDILVTLDLS 455
             ++L  N +     +C + + L     +  K+E            + G  L  + LS
Sbjct: 550 RTINLRQNPLDC---TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 1e-38
 Identities = 77/404 (19%), Positives = 133/404 (32%), Gaps = 21/404 (5%)

Query: 121 NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
            ++  P     S E L  S N     I    F     L      + ++   I   +   +
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQ 80

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
            +L  + L+     F     L     L+++      +        L N K LE+L L +N
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSN 139

Query: 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH--FNISRNVLNGSIPCS 298
            +S        P ++L  +D   N I  ++     + L +  +   N++ N + G  P +
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 299 LHMTMGCFSLQILALSNNSLQGHIFSRSFN--LTNLVTLQLDANQFTGGIPENLLNCSLL 356
                     Q L          IF    N  + +L     +        P        +
Sbjct: 199 FD----SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 357 GG--LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
               + L  ++            S L ++ +   HL   +P+ L  L+ L  L L  N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF 313

Query: 415 SGSLPSCFSSWL-LTQVHLSRNKIEGQLED-VFGDI--LVTLDLSYNR--FSGRIPNWID 468
                   S++  LT + +  N    +L      ++  L  LDLS++    S      + 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
            LSHL  L L+ N              QL+L+DL+   L     
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  140 bits (354), Expect = 6e-35
 Identities = 57/324 (17%), Positives = 100/324 (30%), Gaps = 21/324 (6%)

Query: 202 YYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDV 261
             +   +  +  ++ L  E P  L  +    E L  + N L        + L  LT +D+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGH 321
           ++  I   I         RL+   ++ N L      +L    G  +L+ L      +   
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALS---GPKALKHLFFIQTGISS- 119

Query: 322 IFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNL 380
           I      N   L +L L +N  +            L  L   +N I     + + +L   
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 381 --VDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS---WLLTQVHLSRN 435
             + + +  N + G I            L+         +     +     L        
Sbjct: 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 436 KIEGQLEDVFGDI----LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQL 491
             E     VF  +    + +++L  + F     N     S L  L L   +L  E+P  L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 492 CLLKQLQLIDLSHNNLSGTIPSCL 515
             L  L+ + LS N          
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (334), Expect = 2e-32
 Identities = 48/345 (13%), Positives = 85/345 (24%), Gaps = 38/345 (11%)

Query: 329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
             +   L+   N               L  L L+   I         +   L  +++  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGD 447
            L       L     L  L      IS        +   L  ++L  N I          
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 448 I--LVTLDLSYNRFSGRIPNWIDKLSHLS--YLILANNNLEGEVPVQLCLLKQLQLIDLS 503
              L  LD   N         +  L   +   L L  N++   +          Q ++  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210

Query: 504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEF 563
                  I   L  + +             G +              G   M  E     
Sbjct: 211 GTQNLLVIFKGLKNSTIQS--------LWLGTFEDMDDEDISPAVFEGLCEMSVES---- 258

Query: 564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFS 623
                              ++L  +             + ++ L+L+  +L   +PS   
Sbjct: 259 -------------------INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLV 298

Query: 624 HLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD 668
            LS ++ L LS N  +           +L   S+  N    ++  
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 1/106 (0%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L      ++      +     + +L L  N++            +++ LD   N +    
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 643 PTQLVELYALAIFSVA-HNNLSGKVPDRVGQFATFTENSYDGNSLL 687
              +  L      S+  + N    +       A F   ++ G   L
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQGK 641
           L+LS N+              +  L+L+   L      S F +L  ++ L+LS+++L   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFT 677
                  L AL   ++  N+       +     T  
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 583 LDLSCNKLTGEIPFQIG---YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
           L+L  N        +      L  +  L LS  +L       F+ L  +  +DLS+N L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 640 GKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
                 L  L  +   ++A N++S  +P  +   +     +   N L C
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 583 LDLSCNKLT--GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640
           LDLS + +        Q+  L+ +++LNLS+N  +      F    Q+E LDL++  L+ 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 641 KIP-TQLVELYALAIFSVAHNNLSG 664
           K   +    L+ L + +++H+ L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
            +     L  EIP  +   N    L  S N L     +TFS L  +  LDL+   +    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
                  + L    +  N L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDL+   L+ E+P  +  L+ ++ L LS N        + S+   +  L +  N  + ++
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 643 PTQLVE-LYALAIFSVAHNNLSG 664
            T  +E L  L    ++H+++  
Sbjct: 342 GTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 583 LDLSCNKLTGEIPF-QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LDL+  +L  +        L++++ LNLSH+ L  +    F  L  ++ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 642 I---PTQLVELYALAIFSVAHNNLSG 664
                  L  L  L I  ++  +LS 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 583 LDLSCNKLTGEI-PFQIGYLNMIRALNLSHNNL--MGTIPSTFSHLSQIESLDLSYNMLQ 639
           L +  N    E+    +  L  +R L+LSH+++           +LS ++SL+LSYN   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 640 GKIPTQLVELYALAIFSVAHNNLSGKVPD 668
                   E   L +  +A   L  K   
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (505), Expect = 2e-54
 Identities = 86/529 (16%), Positives = 173/529 (32%), Gaps = 60/529 (11%)

Query: 28  ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYG---TSDFQGLCELVHL 84
            L +   +  L L+G     R   +I  LT ++ L++ +            +G+   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 85  QELHIGYNNIGGTLPWCL--VNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
           ++      +   T        + + L    I S+    +I  S  R      ++   +N 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNN 194

Query: 143 FQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFL 201
              +  +       +KL++FY   +    E            +N +    +   T     
Sbjct: 195 ITFVSKAV---MRLTKLRQFYMGNSPFVAEN------ICEAWENENSEYAQQYKTEDLKW 245

Query: 202 YYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP--------L 253
               +L  V++ +     + P +L +   E++ + +A N      Q+  +          
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 254 KQLTTIDVSKNFIQ-GHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILA 312
           +++  I +  N ++   + T +   + +L       N L G +P +         L  L 
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFG---SEIKLASLN 359

Query: 313 LSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLL--NCSLLGGLYLSDNHISG-- 368
           L+ N +     +       +  L    N+    IP      + S++  +  S N I    
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 369 -----KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISG------- 416
                 +        N+  I + NN +           + L+ ++L  N ++        
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 417 SLPSCFSSW-LLTQVHLSRNKIEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDKLSH 472
                F +  LLT + L  NK+    +D        LV +DLSYN FS   P      S 
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537

Query: 473 LSYL------ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
           L             N    E P  + L   L  + +  N++   +   +
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (474), Expect = 2e-50
 Identities = 78/548 (14%), Positives = 165/548 (30%), Gaps = 67/548 (12%)

Query: 15  PNLETLELRDYHL----------ELLNFTNLEVLILDGSALHIRFLQSIA--VLTSVKHL 62
             LE L L  +             +    + E            F+        + +   
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 63  SMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
            + +      S  +     +   ++    NNI   +   ++ +T LR   + ++      
Sbjct: 165 CINSDPQQK-SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 123 SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIES--HSLTPK 180
                      E    +       + ++   N   L            ++ +   +L   
Sbjct: 223 ICE----AWENENSEYAQQYKTEDLKWD---NLKDLTDVEVYNCPNLTKLPTFLKALP-- 273

Query: 181 FQLQNISLSGCR--------CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL 232
            ++Q I+++  R         D+          +++ + + + NL+       L+  K+L
Sbjct: 274 -EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
             L    N L G      +   +L +++++ N I   IP     F  ++E+ + + N L 
Sbjct: 333 GMLECLYNQLEGKLPAFGS-EIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK 390

Query: 293 GSIPCSLHMTMGCFSLQILALSNNSLQG-------HIFSRSFNLTNLVTLQLDANQFTGG 345
             IP           +  +  S N +          +    F   N+ ++ L  NQ +  
Sbjct: 391 -YIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 346 IPENLLNCSLLGGLYLSDNHISG-------KIPKWLGNLSNLVDIIMPNNHLEG-PIPAN 397
             E     S L  + L  N ++           +   N   L  I +  N L        
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 398 LCKLNFLTVLDLEVNNISGSLPSCFSSW-------LLTQVHLSRNKIEGQLEDVFGDI-- 448
              L +L  +DL  N+ S   P+   +        +  Q     N+   +  +       
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
           L  L +  N     +   I    ++S L + +N         +C   +  +  L ++   
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

Query: 509 GTIPSCLY 516
             I  C  
Sbjct: 625 -DIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (438), Expect = 1e-45
 Identities = 57/435 (13%), Positives = 128/435 (29%), Gaps = 79/435 (18%)

Query: 104 NMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
           +   +  L +     +G +  + +  LT LE L + ++  ++                  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERL-------------- 123

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
                                             P+ +             M+ +  F +
Sbjct: 124 --------------------------------FGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 224 WL-LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE 282
           +   E+  +L    + ++      +       + T I    N I   +   +   L +L 
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLR 209

Query: 283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQF 342
            F +  +       C           +               +  NL +L  +++     
Sbjct: 210 QFYMGNSPFVAENICEA--------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 343 TGGIPENLLNCSLLGGLYLSDNHI--------SGKIPKWLGNLSNLVDIIMPNNHL-EGP 393
              +P  L     +  + ++ N            +          +  I +  N+L   P
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVT 451
           +  +L K+  L +L+   N + G LP+  S   L  ++L+ N+I     +  G    +  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 452 LDLSYNRFSGRIPNW--IDKLSHLSYLILANNNLEG-------EVPVQLCLLKQLQLIDL 502
           L  ++N+    IPN      +S +S +  + N +          +         +  I+L
Sbjct: 382 LSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 503 SHNNLSGTIPSCLYK 517
           S+N +S         
Sbjct: 441 SNNQISKFPKELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (355), Expect = 5e-35
 Identities = 44/317 (13%), Positives = 104/317 (32%), Gaps = 25/317 (7%)

Query: 213 SHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPT 272
             +++ G  P   L +N  +  L L     SG     +  L +L  + +  +  + +   
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 273 GIGAFLPR---LEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNL 329
                +      E     R     +             L    ++++  Q  I   S   
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
                +   +N  T  + + ++  + L   Y+ ++    +         N          
Sbjct: 183 LKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQ 236

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEG--QLEDVF 445
                      L  LT +++        LP+   + L  +  ++++ N+     QL+D +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDW 295

Query: 446 GDI--------LVTLDLSYNRF-SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQ 496
             +        +  + + YN   +  +   + K+  L  L    N LEG++P       +
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354

Query: 497 LQLIDLSHNNLSGTIPS 513
           L  ++L++N ++    +
Sbjct: 355 LASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (315), Expect = 5e-30
 Identities = 43/349 (12%), Positives = 105/349 (30%), Gaps = 68/349 (19%)

Query: 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP----IPANLCKLNFLT 405
           L +   + GL L     SG++P  +G L+ L  + + ++  +       P  +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 406 VLDLEVNNISGSLPSCFSSWLLTQV---HLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS 460
                  +   +          + +    ++ +  +  ++           +    N  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 461 GRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL-------------------LKQLQLID 501
             +   + +L+ L    + N+    E   +                      LK L  ++
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 502 LSHNNLSGTIPSCLYK-TALGE----GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR 556
           + +      +P+ L     +       N   +    + ++           + + +    
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ----------ALADAPVGE 305

Query: 557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL-TGEIPFQIGYLNMIRALNLSHNNLM 615
           K                   ++I   + +  N L T  +   +  +  +  L   +N L 
Sbjct: 306 K-------------------IQI---IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 616 GTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG 664
           G +P+ F    ++ SL+L+YN +             +   S AHN L  
Sbjct: 344 GKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (303), Expect = 2e-28
 Identities = 50/407 (12%), Positives = 113/407 (27%), Gaps = 80/407 (19%)

Query: 28  ELLNFTNLEVLILDGSAL-HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQE 86
           +      ++++ +  + L       S+  +  +  L      L G          + L  
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLAS 357

Query: 87  LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
           L++ YN I             +  L  A N++    +    + ++ +  +  S N+    
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI--- 414

Query: 147 ISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHE 206
                                                  +  +  +              
Sbjct: 415 -----------------------------GSVDGKNFDPLDPTPFKG-----------IN 434

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP-------LKQLTTI 259
           +  ++LS+  +   FP  L      L ++ L  N L+   +  +            LT+I
Sbjct: 435 VSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 260 DVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ 319
           D+  N +           LP L   ++S N  +   P      +   +L+   + N    
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP---LNSSTLKGFGIRNQ--- 546

Query: 320 GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN 379
                               N+     PE +  C  L  L +  N I   + + +    N
Sbjct: 547 ---------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPN 588

Query: 380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL 426
           +  + + +N       + +C      +  L  +     +  C +  +
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (275), Expect = 5e-25
 Identities = 37/313 (11%), Positives = 91/313 (29%), Gaps = 59/313 (18%)

Query: 373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-----L 427
            L +   +  + +      G +P  + +L  L VL L  +    +        +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 428 TQVHLSRNKIEGQLEDVFGDI----LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
            Q    R   +    D         L+   ++ +     I          + +   +NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 484 EGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAA 543
              V   +  L +L+   + ++          ++    E          + +        
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN------- 247

Query: 544 GEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNM 603
                                            LK +  +++       ++P  +  L  
Sbjct: 248 ---------------------------------LKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 604 IRALNLSHNNLM--------GTIPSTFSHLSQIESLDLSYNMLQ-GKIPTQLVELYALAI 654
           ++ +N++ N  +            +      +I+ + + YN L+   + T L ++  L +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 655 FSVAHNNLSGKVP 667
               +N L GK+P
Sbjct: 335 LECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 5e-16
 Identities = 27/228 (11%), Positives = 55/228 (24%), Gaps = 43/228 (18%)

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG----EVPVQLCLLKQLQLIDLSH 504
           +  L L     SGR+P+ I +L+ L  L L ++  +       P  +      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 505 NNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFR 564
            +   T      +                 +   S P          S    K+      
Sbjct: 143 MHYQKTFVDYDPREDF---------SDLIKDCINSDPQQKS--IKKSSRITLKDTQ---- 187

Query: 565 TKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624
                             +    N +T  +   +  L  +R   + ++  +         
Sbjct: 188 ------------------IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
                  +  Y         +   L  L    V +     K+P  +  
Sbjct: 229 N-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 20/237 (8%), Positives = 54/237 (22%), Gaps = 35/237 (14%)

Query: 451 TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510
             +   + +  +    ++    ++ L L      G VP  +  L +L+++ L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSY 570
                              P                      S  +K++      K    
Sbjct: 121 ERLFG--------------PKGISA---------------NMSDEQKQKMRMHYQKTFVD 151

Query: 571 YYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIES 630
           Y        +    ++ +     I            +    NN+   +      L+++  
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQ 210

Query: 631 LDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL 687
             +  +    +   +  E          +         +       T+        L
Sbjct: 211 FYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS 634
           +   I    D   N+   E P  I     +  L +  N++   +         I  LD+ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIK 595

Query: 635 YNMLQGKIPTQLVELYALAIFSVAHNNLS 663
            N       + +       ++ + ++   
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 583 LDLSCNKLTG-------EIPFQIGYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLS 634
           ++L  N LT        +         ++ +++L  N L         + L  +  +DLS
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 635 YNMLQGKIP------TQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           YN      P      + L             N    + P+ +  
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+   N+L G++P   G    + +LNL++N +     +      Q+E+L  ++N L+  I
Sbjct: 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 643 P--TQLVELYALAIFSVAHNNLSG 664
           P       +  ++    ++N +  
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 8e-09
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 14/96 (14%)

Query: 583 LDLSCNKLTG-------EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSY 635
           +D S N++          +         + ++NLS+N +       FS  S + S++L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 636 NMLQG-------KIPTQLVELYALAIFSVAHNNLSG 664
           NML                  Y L    +  N L+ 
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 9/99 (9%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML---- 638
            +    +       +   L  +  + + +   +  +P+    L +++ ++++ N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 639 ----QGKIPTQLVELYALAIFSVAHNNL-SGKVPDRVGQ 672
                 +          + I  + +NNL +  V   + +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 583 LDLSCNKLTGEIP-FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL------DLSY 635
           +DL  NKLT     F+   L  +  ++LS+N+     P+   + S ++        D   
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 636 NMLQGKIPTQLVELYALAIFSVAHNNLSG 664
           N    + P  +    +L    +  N++  
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 12/122 (9%), Positives = 32/122 (26%), Gaps = 6/122 (4%)

Query: 584 DLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG--- 640
           +   +    +    +     +  L+L      G +P     L+++E L L  +  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 641 -KIPTQLVELYALAIFSVAHNNLSGKVPDRVG--QFATFTENSYDGNSLLCGQPLSESCY 697
              P  +    +         +      D      F+   ++  + +        S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 698 PN 699
             
Sbjct: 183 LK 184

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH--LSQIESLDLSYNMLQG 640
           L+L+ N++T       G+   +  L+ +HN L   IP+ F    +S + ++D SYN +  
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 641 -------KIPTQLVELYALAIFSVAHNNLSGKVPD 668
                   +     +   ++  ++++N +S    +
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  194 bits (494), Expect = 5e-52
 Identities = 90/594 (15%), Positives = 182/594 (30%), Gaps = 80/594 (13%)

Query: 78  LCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLT----SL 133
           L     +  L +      G +P  +  +T L++L   ++  T +        LT      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRC 193
            + R+  +  ++ + ++   N S L +    +N     I+  S      L++  +     
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI---SLKDTQIGNLTN 435

Query: 194 DFTF-PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
             TF  + +    +L+ +  ++                + E             ++  + 
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMT------MGCF 306
           LK LT +++        +P  +   LP L+  NI+ N    +       T          
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
            +QI  +  N+L+    S S   +  L  L    N+      E       L  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ 606

Query: 366 ISGKIPKWLG-NLSNLVDIIMPNNHLEG-PIPANLCKLNFLTVLDLEVNNISGSLPSCFS 423
           I   IP+        +  +   +N L+  P   N   +  +  +D   N I     +   
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 424 SWL------LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS-------GRIPNWID 468
           S         + V LS N+I+    ++F     + T+ LS N  +               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 469 KLSHLSYLILANNNLEGEVP--VQLCLLKQLQLIDLSHNNLSGTIPSCLYK-TALGEGNY 525
               L+ + L  N L   +    +   L  L  +D+S+N  S + P+     + L     
Sbjct: 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI 783

Query: 526 DSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDL 585
                          P                       T              +  L +
Sbjct: 784 RHQRDAEGNRILRQWPT-------------------GITT-----------CPSLIQLQI 813

Query: 586 SCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
             N +  ++  ++     +  L+++ N  +    ++     +     L Y+  Q
Sbjct: 814 GSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  160 bits (407), Expect = 5e-41
 Identities = 71/522 (13%), Positives = 134/522 (25%), Gaps = 122/522 (23%)

Query: 15  PNLETLELRDYHLELLN-FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTS 73
             L+ +   +      N   + E    D +  +     S + L  +  + + NC      
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 74  DFQGLCELVHLQELHIGYNNIGG---------TLPWCLVNMTSLRILDIASNQITGNISS 124
               L +L  LQ L+I  N              L         ++I  +  N +    +S
Sbjct: 508 P-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
           + L+ +  L  L   +N+ +   +F                                   
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFG-------------------------------TNV 595

Query: 185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSG 244
                                 L  + L +  +  E P        ++E L  ++N L  
Sbjct: 596 K---------------------LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 245 F-FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTM 303
                    +  + ++D S N I       I   +   +  N                  
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGIN------------------ 674

Query: 304 GCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT-------GGIPENLLNCSLL 356
                  + LS N +Q          + + T+ L  N  T            N  N  LL
Sbjct: 675 ----ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 357 GGLYLSDNHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
             + L  N ++  +        L  L ++ +  N      P      + L    +     
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 415 SGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSH 472
                               N+I  Q          L+ L +  N     +   +     
Sbjct: 789 -----------------AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQ 828

Query: 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC 514
           L  L +A+N         +C   +  +  L ++     I  C
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 8e-28
 Identities = 49/344 (14%), Positives = 101/344 (29%), Gaps = 28/344 (8%)

Query: 187 SLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFF 246
           +L G    +         H L +     +++ G+ P   L+NN  +  L LA     G  
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 247 QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIP---CSLHMTM 303
              +  L +L  +    +          G      +     ++ +              +
Sbjct: 340 PDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 304 GCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD 363
               L   A++ N     I   S        +    N+ T  I + +   + L  +Y ++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFAN 457

Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS 423
           +  +          +N                 +   L  LT ++L        LP    
Sbjct: 458 SPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 424 SWL--LTQVHLSRNKIEG---------QLEDVFGDI--LVTLDLSYNRFSGRIPNW-IDK 469
             L  L  ++++ N+            +L D       +    + YN       +  + K
Sbjct: 513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 470 LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
           +  L  L   +N +   +        +L  + L +N +   IP 
Sbjct: 572 MVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (293), Expect = 4e-27
 Identities = 61/437 (13%), Positives = 120/437 (27%), Gaps = 80/437 (18%)

Query: 279 PRLEHFNISRNVLNG--SIPCSLHMTMGCFS--------LQILALSNNSLQGHIFSRSFN 328
            R E F +  N L    ++P  L  T              + L   N        + + +
Sbjct: 239 VRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIH 298

Query: 329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
             N    + + + +      +L N   + GL L+     G++P  +G L+ L  +    +
Sbjct: 299 SLNWNFNK-ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357

Query: 389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFG 446
                      +     + +   + I       F  +   L    L ++ I    E    
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417

Query: 447 DILVTLDLSYNRFSG------RIPNWIDKLSHLSYLILANNNLEGEVPVQLCL------- 493
                + L   +          I   I +L+ L  +  AN+    +              
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

Query: 494 ------------LKQLQLIDLSHNNLSGTIPSCLYK-TALGE----GNYDSAAPTSEGNY 536
                       LK L  ++L +      +P  LY    L       N   +A   + ++
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 537 GASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG-EIP 595
              +                                    ++I     +  N L      
Sbjct: 538 TRLADDEDTGPK----------------------------IQI---FYMGYNNLEEFPAS 566

Query: 596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVE-LYALAI 654
             +  +  +  L+  HN +       F    ++  L L YN ++  IP         +  
Sbjct: 567 ASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEG 623

Query: 655 FSVAHNNLSGKVPDRVG 671
              +HN L   +P+   
Sbjct: 624 LGFSHNKLKY-IPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSH------NNLMGTIPSTFSHLSQIESLDLSYN 636
           +D+S N  +   P Q    + ++A  + H      N ++   P+  +    +  L +  N
Sbjct: 758 MDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 637 MLQGKIPTQLVELYALAIFSVAHNNL-SGKVPDRVGQFATFTEN-SYDGNSLLCGQPL 692
            ++ K+  +L     L I  +A N   S  V               YD    + G   
Sbjct: 817 DIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 17/105 (16%)

Query: 583 LDLSCNKLT-------GEIPFQIGYLNMIRALNLSHNNLMGTIPS--TFSHLSQIESLDL 633
           + LS N +T                  ++  ++L  N L  ++      + L  + ++D+
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDV 760

Query: 634 SYNMLQGKIP------TQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           SYN      P      +QL             N +  + P  +  
Sbjct: 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 583 LDLSCNKLTG---EIPFQIGYLNMIR--ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM 637
           +D S NK+      I   +     I    + LS+N +       F+  S I ++ LS N+
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 638 LQ-------GKIPTQLVELYALAIFSVAHNNLSG 664
           +                  Y L    +  N L+ 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 583 LDLSCNKLTGEIP--FQIGYLNMIRALNLSHNNLMGTIPSTFS-----HLSQIESLDLSY 635
           L  S NKL   IP  F    + ++ +++ S+N +     +              ++ LSY
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 636 NMLQGKIPTQLVELYALAIFSVAHNNLS 663
           N +Q            ++   +++N ++
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LD   NK+   +    G    +  L L +N +        +   Q+E L  S+N L+  I
Sbjct: 578 LDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-I 634

Query: 643 P--TQLVELYALAIFSVAHNNLSG 664
           P       +Y +     ++N +  
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 11/134 (8%), Positives = 35/134 (26%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
            +   +    +    +     +  L+L+     G +P     L++++ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNGSP 702
                E     +     + +          +      S      +   P  +    +   
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 703 NVSVSNEEDDDNFI 716
           ++  +   +  N I
Sbjct: 424 SLKDTQIGNLTNRI 437

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS 634
           +   I    D   N++  + P  I     +  L +  N++   +        Q+  LD++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIA 835

Query: 635 YNMLQGKIPTQLVELYALAIFSVAHNNLS 663
            N       T +       ++ + ++   
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 583 LDLSCNKLTGEIPFQIGY-LNMIRALNLSHNNLMGTIPSTFS--HLSQIESLDLSYNMLQ 639
           L L  N++  EIP       + +  L  SHN L   IP+ F+   +  + S+D SYN + 
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 640 GKIPTQLVELYALAIFSVAHNNLSG 664
            +       +      + +   LS 
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSY 682

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (455), Expect = 5e-48
 Identities = 93/514 (18%), Positives = 171/514 (33%), Gaps = 55/514 (10%)

Query: 15  PNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
            +L  L L    ++          T+LE L+   + L       I  L ++K L++ + +
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI----LDIASNQITGNISS 124
           ++          L +L  + + YN I       L  +         LD++ N I   I  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKF--- 181
              +    L EL +  N     I      N + L            E       P     
Sbjct: 199 QAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 182 ----QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLL 237
                +    L+            +    +  + L+ ++++       +  + + ++L +
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSI 314

Query: 238 ANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC 297
               L  F   P   L  L ++ ++ N             LP L + ++SRN L+ S  C
Sbjct: 315 IRCQLKQF---PTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCC 368

Query: 298 SLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSL 355
           S    +G  SL+ L LS N     I S +F  L  L  L    +        +   +   
Sbjct: 369 SYSD-LGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNI 414
           L  L +S  +           L++L  + M  N  +    +N       LT LDL    +
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 415 SGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLS 474
                  F +  L +                   L  L++S+N       +  ++L  LS
Sbjct: 486 EQISWGVFDT--LHR-------------------LQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            L  + N +E    +     K L   +L++N+++
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (446), Expect = 9e-47
 Identities = 87/523 (16%), Positives = 166/523 (31%), Gaps = 57/523 (10%)

Query: 14  FPNLETLELRDYHLE------LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             + + ++L    L+        NF+ L+ L L    +     ++   L  + +L +   
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            +   S       L  L+ L      +     + +  + +L+ L++A N I      +  
Sbjct: 91  PIQSFSP-GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 128 RYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
             LT+L  + +S N  Q  I+        +                           ++ 
Sbjct: 150 SNLTNLVHVDLSYNYIQT-ITVNDLQFLRENP---------------------QVNLSLD 187

Query: 188 LSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQ 247
           +S    DF   +       L  + L             L+N   L    L          
Sbjct: 188 MSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 248 MPVNPLK--------QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
           + +             +    ++               L  +   +++   +       L
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIK-----YL 300

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359
                 F  Q L++    L+        +L  L +L L  N+ +  I    +    L  L
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYL 355

Query: 360 YLSDNHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGS 417
            LS N +S            ++L  + +  N     + AN   L  L  LD + + +   
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414

Query: 418 LP-SCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSH 472
              S F S   L  + +S    +   + +F  +  L TL ++ N F      N     ++
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
           L++L L+   LE         L +LQL+++SHNNL     S  
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (352), Expect = 1e-34
 Identities = 73/424 (17%), Positives = 135/424 (31%), Gaps = 61/424 (14%)

Query: 121 NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
            +S  P    +S + + +S N  +                           ++S+S +  
Sbjct: 22  KLSKVPDDIPSSTKNIDLSFNPLK--------------------------ILKSYSFSNF 55

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
            +LQ + LS C  +    +  +  H L  + L+   ++  F          LE L+    
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVET 114

Query: 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL- 299
            L+     P+  L  L  ++V+ NFI         + L  L H ++S N +       L 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLN------- 352
            +         L +S N +   I  ++F    L  L L  N  +  I +  L        
Sbjct: 175 FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 353 CSLLGGLYLSDNHISGKIPKWLGNLSNLV--DIIMPNNHLEGPIPANLCKLNFLTVLDLE 410
             L+ G +  + ++    P  +  L ++   +  +   +           L  ++ + L 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 411 VNNISGSLPSCFSSWL--------------------LTQVHLSRNKIEGQLEDVFGDILV 450
             +I                                L  + L+ NK     + V    L 
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS 353

Query: 451 TLDLSYNRFSGRIPN--WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            LDLS N  S            + L +L L+ N     +      L++LQ +D  H+ L 
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLK 412

Query: 509 GTIP 512
               
Sbjct: 413 RVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 4e-34
 Identities = 76/483 (15%), Positives = 141/483 (29%), Gaps = 63/483 (13%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLE-------LLNFTNLEVLILDG---SALHIRFLQ 51
            ++SL          L+ L +    +          N TNL  + L       + +  LQ
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 52  SIAVLT-SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPW-CLVNMTSLR 109
            +         L M    +    D     + + L EL +  N     +   CL N+  L 
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 110 ILDIASNQITGN-------------------------------ISSSPLRYLTSLEELRV 138
           +  +   +                                           L ++  + +
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFP 198
           +    +     E    H K +     + +L  +  +  L     L++++L+  +   +  
Sbjct: 293 AGVSIK---YLEDVPKHFKWQSLSIIRCQL-KQFPTLDLP---FLKSLTLTMNK--GSIS 343

Query: 199 RFLYYQHELRYVDLSHMNLRGEFPN-WLLENNKELETLLLANNSLSGFFQMPVNPLKQLT 257
                   L Y+DLS   L       +       L  L L+ N         +  L++L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQ 402

Query: 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
            +D   + ++          L +L + +IS                G  SL  L ++ NS
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL---GLTSLNTLKMAGNS 459

Query: 318 LQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGN 376
            + +  S  F N TNL  L L   Q              L  L +S N++          
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 377 LSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNK 436
           L +L  +    N +E            L   +L  N+++     C     L  V   +  
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC---ICEHQKFLQWVKEQKQF 576

Query: 437 IEG 439
           +  
Sbjct: 577 LVN 579

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (336), Expect = 1e-32
 Identities = 80/455 (17%), Positives = 152/455 (33%), Gaps = 47/455 (10%)

Query: 234 TLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG 293
           T    +  LS   ++P +       ID+S N ++  + +   +    L+  ++SR  +  
Sbjct: 15  TYQCMDQKLS---KVPDDIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET 70

Query: 294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLN 352
               + H   G   L  L L+ N +Q      SF  LT+L  L     +        +  
Sbjct: 71  IEDKAWH---GLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 353 CSLLGGLYLSDNHISG-KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT----VL 407
              L  L ++ N I   K+P +  NL+NLV + +  N+++     +L  L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 408 DLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILV---TLDLSYNRFSGRI- 463
           D+ +N I       F    L ++ L  N     +       L       L    F     
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 464 -----PNWIDKLSHLSYLIL--ANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY 516
                P+ ++ L  ++         N   +  V+   L  +  + L+  ++   +     
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK 305

Query: 517 KTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRI 576
                  +                P             +   +S+       S  ++   
Sbjct: 306 HFKWQSLSII-------RCQLKQFPTLD----------LPFLKSLTLTMNKGSISFKKVA 348

Query: 577 LKIMFGLDLSCNKLT--GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS 634
           L  +  LDLS N L+  G   +     N +R L+LS N     + + F  L +++ LD  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQ 407

Query: 635 YNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD 668
           ++ L+        + L  L    +++ N       
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 23/81 (28%), Positives = 43/81 (53%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDLS  +L          L+ ++ LN+SHNNL+    S ++ L  + +LD S+N ++   
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 643 PTQLVELYALAIFSVAHNNLS 663
                   +LA F++ +N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L ++ N         +      +  L+LS   L       F  L +++ L++S+N L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 642 IPTQLVELYALAIFSVAHNNLSG 664
             +   +LY+L+    + N +  
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQGK 641
           LDLS N     +      L  ++ L+  H+ L      S F  L ++  LD+SY   +  
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRV 670
                + L +L    +A N+        V
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 416 GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSY 475
           GSL  C              K+  ++ D        +DLS+N             S L +
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 476 LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
           L L+   +E         L  L  + L+ N +    P   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 583 LDLSCNKLTGEIPFQ-IGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LD   + L     F     L  +  L++S+ N        F  L+ + +L ++ N  +  
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 642 IPTQ-LVELYALAIFSVAHNNLSG 664
             +        L    ++   L  
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQGK 641
           L     KL     F IG L  ++ LN++HN +    +P+ FS+L+ +  +DLSYN +Q  
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 642 IPTQLVELYALAIFSV----AHNNLSGKVPDRVGQFATFTENSYDGNSLL 687
               L  L      ++    + N +   + D+  Q     E +  GN   
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 14/130 (10%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRA----LNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
           +DLS N +       + +L         L++S N +       F  +  +  L L  N  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216

Query: 639 QGKIP-TQLVELYALAIFSVAHNNLSGKVPDRVGQFATF--------TENSYDGNSLLCG 689
              I  T L  L  L +  +       +    + + +           E      +    
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 690 QPLSESCYPN 699
             +   C  N
Sbjct: 277 DIVKFHCLAN 286

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (401), Expect = 3e-40
 Identities = 116/538 (21%), Positives = 191/538 (35%), Gaps = 64/538 (11%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLEL-------LNFTNLEVLILDGSALHIRFLQSIA 54
            + ++  S +     L+ LEL   +  L        N  NL +L L  S   I FL   A
Sbjct: 35  YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--KIYFLHPDA 92

Query: 55  V--LTSVKHLSMRNCYLYGTS-DFQGLCELVHLQELHIGYNNIGG-TLPWCLVNMTSLRI 110
              L  +  L +  C L            L  L  L +  N I    L      + SL+ 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 111 LDIASNQITGNISSSPLRYLT--SLEELRVSNNQFQ--IPISFEPFFNHSK---LKKFYG 163
           +D +SNQI   +    L  L   +L    ++ N     + + +    N  +   L+    
Sbjct: 153 IDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
             N   V+I  +      + Q  SL                H +        N++ +   
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLI-------------LAHHIMGAGFGFHNIK-DPDQ 257

Query: 224 WLLEN--NKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRL 281
                     +  L L++  +          LK L  ++++ N I   I       L  L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNL 316

Query: 282 EHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDAN 340
           +  N+S N+L      + +   G   +  + L  N +   I  ++F  L  L TL L  N
Sbjct: 317 QVLNLSYNLLGELYSSNFY---GLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN 372

Query: 341 QFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG-PIPANLC 399
             T      +     +  ++LS N +   +PK +   +NL+ +    N LE   I   L 
Sbjct: 373 ALT-----TIHFIPSIPDIFLSGNKLV-TLPK-INLTANLIHLS--ENRLENLDILYFLL 423

Query: 400 KLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLE-----DVFGDI--LV 450
           ++  L +L L  N  S        S    L Q+ L  N ++   E     DVF  +  L 
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 451 TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            L L++N  +   P     L+ L  L L +N L   +     L   L+++D+S N L 
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (392), Expect = 4e-39
 Identities = 102/526 (19%), Positives = 180/526 (34%), Gaps = 55/526 (10%)

Query: 31  NFTNLEVLILDGSALHIRFLQ--SIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
                E L+L  +  +IR +   S   L  ++ L + + Y   T D +    L +L+ L 
Sbjct: 22  VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 89  IGYNNIGGTLPWCLVNMTSLRILDIASNQIT-GNISSSPLRYLTSLEELRVSNNQFQIPI 147
           +G + I    P     +  L  L +    ++   +     R L +L  L +S NQ +   
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 148 SFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP--KFQLQNISLSGCR------CDFTFPR 199
               F   + LK      N+    +  H L P     L   SL+          D+    
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 200 FLYYQHELRYVDLSHMNLRGEFPNWL-----------LENNKELETLLLANNSLSGFFQM 248
             +    L  +D+S      +                L     +       +++    Q 
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 249 PVNPLKQ--LTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF 306
               L +  +  +D+S  F+   + + +   L  L+  N++ N +N  I       +   
Sbjct: 259 TFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLD-- 314

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           +LQ+L LS N L   ++S +F  L  +  + L  N       +       L  L L DN 
Sbjct: 315 NLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF-LTVLDLEVNNISGSLPSCFSS 424
           ++      +  + ++ DI +  N L       L K+N    ++ L  N +       F  
Sbjct: 374 LTT-----IHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 425 WL--LTQVHLSRNKIEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDK-----LSHLS 474
            +  L  + L++N+      D        L  L L  N         +       LSHL 
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTAL 520
            L L +N L    P     L  L+ + L+ N L+  +        L
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANL 528

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (277), Expect = 5e-25
 Identities = 75/373 (20%), Positives = 131/373 (35%), Gaps = 40/373 (10%)

Query: 306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           F  +I      +L   +      L     L L  N        +      L  L L   +
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 366 ISGKI-PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS-GSLPSCFS 423
               I  +   NL NL  + + ++ +    P     L  L  L L    +S   L   + 
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 424 SWL--LTQVHLSRNKIEG-QLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLS--HLSYL 476
             L  LT++ LS+N+I    L   FG +  L ++D S N+      + ++ L    LS+ 
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 477 ILANNNLEGEVPVQLCLLKQ------LQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAP 530
            LA N+L   V V             L+++D+S N  +  I                   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-------------- 225

Query: 531 TSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL 590
               N  + S A    ++           +++   +NT        ++    LDLS   +
Sbjct: 226 ----NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH---LDLSHGFV 278

Query: 591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY 650
                     L  ++ LNL++N +       F  L  ++ L+LSYN+L     +    L 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 651 ALAIFSVAHNNLS 663
            +A   +  N+++
Sbjct: 339 KVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 1e-22
 Identities = 57/322 (17%), Positives = 105/322 (32%), Gaps = 24/322 (7%)

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264
            + R       NL       + +     E LLL+ N +          L+QL  +++   
Sbjct: 4   FDGRIAFYRFCNLT-----QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 265 FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS 324
           +    I       LP L   ++  + +   +        G F L  L L    L   +  
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDA--FQGLFHLFELRLYFCGLSDAVLK 115

Query: 325 RSF--NLTNLVTLQLDANQFTG-GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLS--N 379
             +  NL  L  L L  NQ     +  +    + L  +  S N I       L  L    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 380 LVDIIMPNNHLEGPIPANLCK-LNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE 438
           L    +  N L   +  +  K +N    + LE+ ++SG+       W +       N I 
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG------WTVDITGNFSNAIS 229

Query: 439 GQLEDVF--GDILVTLDLSYNRFSGRIPNWIDKL--SHLSYLILANNNLEGEVPVQLCLL 494
                       ++     ++       N    L  S + +L L++  +          L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 495 KQLQLIDLSHNNLSGTIPSCLY 516
           K L++++L++N ++       Y
Sbjct: 290 KDLKVLNLAYNKINKIADEAFY 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 58/355 (16%), Positives = 116/355 (32%), Gaps = 50/355 (14%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV 55
            ++ +    +    NL+ L L    L  L          +  + L  + + I   Q+   
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 56  LTSVKHLSMRNCYLYGTSDFQGLCEL--------------VHLQELHIGYNNIGG-TLPW 100
           L  ++ L +R+  L        + ++              +    +H+  N +    + +
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 101 CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK 160
            L+ +  L+IL +  N+ +            SLE+L +  N  Q+               
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------------ 468

Query: 161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGE 220
                     E+          LQ + L+    +   P    +   LR + L+   L   
Sbjct: 469 ---------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-V 518

Query: 221 FPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPR 280
             +  L  N  LE L ++ N L        +    L+ +D++ N         +  F+  
Sbjct: 519 LSHNDLPAN--LEILDISRNQLLAP---NPDVFVSLSVLDITHNKFICECE--LSTFINW 571

Query: 281 LEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTL 335
           L H N++       I C    +    SL  L+      +  + S  F+L  + T+
Sbjct: 572 LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 40/212 (18%)

Query: 583 LDLSCNKLTGEIPFQI-----GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM 637
           L L  N L      ++       L+ ++ L L+HN L    P  FSHL+ +  L L+ N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 638 LQ----GKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
           L       +P  L  L       ++ N L    PD    F + +      N  +C   LS
Sbjct: 516 LTVLSHNDLPANLEILD------ISRNQLLAPNPD---VFVSLSVLDITHNKFICECELS 566

Query: 694 E--------------------SCYPNGSPNVSVS--NEEDDDNFIDMGSFYITFIISYVI 731
                                  YP+    VS+   + E  D    + S   +  I   +
Sbjct: 567 TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

Query: 732 VILGIFGVLYVNPYWRRRWFYLIETYIAFCYY 763
            +      +     +R   F   +T     + 
Sbjct: 627 TLTLFLMTILTVTKFRGFCFICYKTAQRLVFK 658

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 583 LDLSCNKLTGEI--PFQIGYLNMIRALNLSHNNLMG-TIPSTFSHLSQIESLDLSYNMLQ 639
           L L    L+  +        L  +  L+LS N +    +  +F  L+ ++S+D S N + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 640 GKIPTQLVELYA--LAIFSVAHNNLSGKVP 667
                +L  L    L+ FS+A N+L  +V 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 1e-39
 Identities = 101/507 (19%), Positives = 165/507 (32%), Gaps = 76/507 (14%)

Query: 14  FPNLETLELRDYHL----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
                   L   ++       +   +  L      L I+ +  +  L ++  ++  N  L
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA--DRLGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
              +D   L  L  L ++ +  N I    P  L N+T+L  L + +NQIT      PL+ 
Sbjct: 81  ---TDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKN 132

Query: 130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS 189
           LT+L  L +S+N              + L++                L P   L      
Sbjct: 133 LTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVT-------DLKPLANLTT---- 178

Query: 190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMP 249
                            L  +D+S   +        L     LE+L+  NN +S     P
Sbjct: 179 -----------------LERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT--P 216

Query: 250 VNPLKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSLHMTMGCFS 307
           +  L  L  + ++ N +       IG    L  L   +++ N ++   P S     G   
Sbjct: 217 LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAPLS-----GLTK 266

Query: 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS 367
           L  L L  N +     S    LT L  L+L+ NQ        + N   L  L L  N+IS
Sbjct: 267 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 322

Query: 368 GKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SCFSSWL 426
              P  + +L+ L  +   NN +       L  L  +  L    N IS   P +  +   
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLANLTR-- 376

Query: 427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI-PNWIDKLSHLSYLILANNNLEG 485
           +TQ+ L+           +   +   +   N     I P  I      +   +  N    
Sbjct: 377 ITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS- 434

Query: 486 EVPVQLCLLKQLQLIDLSHNNLSGTIP 512
                     Q   I       SGT+ 
Sbjct: 435 YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (356), Expect = 6e-36
 Identities = 97/450 (21%), Positives = 159/450 (35%), Gaps = 66/450 (14%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
           +       L    +  +G  N+  T+     ++  +  L      I    S   + YL +
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNN 69

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR 192
           L ++  SNNQ        P  N +KL       N++       +LT    L  ++L   +
Sbjct: 70  LTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLT---NLTGLTLFNNQ 123

Query: 193 CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
              T    L     L  ++LS   +        L     L+ L   N         P+  
Sbjct: 124 --ITDIDPLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGNQVTDLK---PLAN 175

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQI 310
           L  L  +D+S N +     + I     L  LE    + N ++   P          +L  
Sbjct: 176 LTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLG-----ILTNLDE 225

Query: 311 LALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI 370
           L+L+ N L+        +LTNL  L L  NQ +      L   + L  L L  N IS   
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNIS 281

Query: 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
           P  L  L+ L ++ +  N LE   P  +  L  LT L L  NNIS   P   SS  LT+ 
Sbjct: 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS--LTK- 332

Query: 431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ 490
                             L  L    N+ S    + +  L+++++L   +N +    P  
Sbjct: 333 ------------------LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP-- 370

Query: 491 LCLLKQLQLIDLSHNNLSGTIPSCLYKTAL 520
           L  L ++  + L+    +    +     ++
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (256), Expect = 4e-23
 Identities = 70/337 (20%), Positives = 131/337 (38%), Gaps = 29/337 (8%)

Query: 15  PNLETLELRDYHLELLNFTNLEVL-ILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTS 73
            +L+ L   +   +L    NL  L  LD S+  +  +  +A LT+++ L   N  +   S
Sbjct: 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI---S 212

Query: 74  DFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL 133
           D   L  L +L EL +  N +       L ++T+L  LD+A+NQI+   + +PL  LT L
Sbjct: 213 DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQIS---NLAPLSGLTKL 267

Query: 134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRC 193
            EL++  NQ     +  P    + L      +N+L       +L     L  ++L     
Sbjct: 268 TELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLK---NLTYLTLYFNN- 320

Query: 194 DFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPL 253
             +    +    +L+ +   + N   +  +  L N   +  L   +N +S     P+  L
Sbjct: 321 -ISDISPVSSLTKLQRLFFYN-NKVSDVSS--LANLTNINWLSAGHNQISDLT--PLANL 374

Query: 254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILAL 313
            ++T + ++              +   +   N  +NV    I  +     G  S     +
Sbjct: 375 TRITQLGLNDQAWTNAPVN----YKANVSIPNTVKNVTGALIAPATISDGG--SYTEPDI 428

Query: 314 SNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL 350
           + N         S+  +  VT+      F+G + + L
Sbjct: 429 TWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L  + N+++   P  +G L  +  L+L+ N L      T + L+ +  LDL+ N +    
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 259

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  L  L  L    +  N +S 
Sbjct: 260 P--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L  N ++   P  +  L  ++ L   +N +  +  S+ ++L+ I  L   +N +    
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLT 369

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL 687
           P  L  L  +    +     +   P       +      +    L
Sbjct: 370 P--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDL+ N+++   P  +  L  +  L L  N +    P   + L+ + +L+L+ N L+   
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  +  L  L   ++  NN+S 
Sbjct: 304 P--ISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L  N+++   P  +  L  +  L L+ N L    P   S+L  +  L L +N +    
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  +  L  L      +N +S 
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
             L    +T  +      L+ +  L      +         +L+ +  ++ S N L    
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  L  L  L    + +N ++ 
Sbjct: 85  P--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L      +   I   + YLN +  +N S+N L    P    +L+++  + ++ N +    
Sbjct: 51  LQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  L  L  L   ++ +N ++ 
Sbjct: 107 P--LANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           + ++ N++    P  +  L  +  L L +N +  T      +L+ +  L+LS N +    
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDIS 150

Query: 643 P----TQLVELY 650
                T L +L 
Sbjct: 151 ALSGLTSLQQLS 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (382), Expect = 1e-38
 Identities = 93/528 (17%), Positives = 175/528 (33%), Gaps = 40/528 (7%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
             + + L+L    L  L      +F  L+VL L    +      +   L+ +  L +   
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
            +   +       L  LQ+L     N+     + + ++ +L+ L++A N I         
Sbjct: 87  PIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 128 RYLTSLEELRVSNNQFQ--IPISFEPFFN-HSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
             LT+LE L +S+N+ Q                        N +   I+  +   + +L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIRLH 203

Query: 185 NISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRG-----EFPNWLLENNKELETLLLA 238
            ++L          +  +     L    L     R      +F    LE    L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 239 NNSLSGFFQMPVN---PLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295
              L  +    ++    L  +++  +    I+        ++    +H  +         
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP 320

Query: 296 PCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT--GGIPENLLNC 353
              L       SL+ L  ++N           +L +L  L L  N  +  G   ++    
Sbjct: 321 TLKLK------SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVN 412
           + L  L LS N +   +      L  L  +   +++L+     +    L  L  LD+   
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 413 NISGSLPSCFSSWL-LTQVHLSRNKIEGQL-EDVFGDI--LVTLDLSYNRFSGRIPNWID 468
           +   +    F+    L  + ++ N  +     D+F ++  L  LDLS  +     P   +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY 516
            LS L  L +A+N L+         L  LQ I L  N    + P   Y
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 7e-28
 Identities = 73/428 (17%), Positives = 144/428 (33%), Gaps = 28/428 (6%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
            S + LD++ N +  ++ S        L+ L +S  + Q  I    + + S L       
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N +   +   + +    LQ +              + +   L+ ++++H  ++       
Sbjct: 86  NPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLT----TIDVSKNFIQGHIPTGIGAFLPRL 281
             N   LE L L++N +   +   +  L Q+     ++D+S N +   I  G    + RL
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RL 202

Query: 282 EHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFN----LTNLVTLQL 337
               +  N  + ++  +    +    +  L L     +G++     +    L NL   + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 338 DANQ---FTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPI 394
                  +   I +     + +    L    I  ++  +  N      + + N       
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQHLELVNCKFGQ-F 319

Query: 395 PANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE--GQLEDVFGDI--LV 450
           P    KL  L  L    N    +  S      L  + LSRN +   G           L 
Sbjct: 320 PTL--KLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 451 TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG-EVPVQLCLLKQLQLIDLSHNNLSG 509
            LDLS+N     + +    L  L +L   ++NL+          L+ L  +D+SH +   
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 510 TIPSCLYK 517
                   
Sbjct: 436 AFNGIFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 3e-27
 Identities = 78/428 (18%), Positives = 133/428 (31%), Gaps = 62/428 (14%)

Query: 121 NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
           N    P     S + L +S N  +                           + S+S    
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR--------------------------HLGSYSFFSF 51

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
            +LQ + LS C               L  + L+   ++             L+ L+    
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET 110

Query: 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL- 299
           +L+     P+  LK L  ++V+ N IQ        + L  LEH ++S N +       L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLN------- 352
            +         L LS N +   I   +F    L  L L  N  +  + +  +        
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 353 CSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG---PIPANLCKLNFLTVLDL 409
             L+ G + ++ ++       L  L NL        +L+     I      L  ++   L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 410 EVNNISGSLPSCFSSWL--------------------LTQVHLSRNKIEGQLEDVFGDIL 449
               I       ++                       L ++  + NK      +V    L
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 450 VTLDLSYNR--FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
             LDLS N   F G         + L YL L+ N +   +      L+QL+ +D  H+NL
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 508 SGTIPSCL 515
                  +
Sbjct: 409 KQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (275), Expect = 4e-25
 Identities = 87/386 (22%), Positives = 131/386 (33%), Gaps = 34/386 (8%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           S + L LS N L+ H+ S SF +   L  L L   +          + S L  L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI-SGSLPSCFSS 424
           I          LS+L  ++    +L       +  L  L  L++  N I S  LP  FS+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 425 W-LLTQVHLSRNKIEGQLEDVFGD------ILVTLDLSYNRFSGRIPNWIDKLSHLSYLI 477
              L  + LS NKI+               + ++LDLS N  +  I     K   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 478 LANNNLEGEVPVQLCL-LKQLQLIDL------SHNNLSGTIPSCLYK-TALGEGNYDSAA 529
           L NN     V       L  L++  L      +  NL     S L     L    +  A 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 530 PTSEGNYGASSPAAGEAVSPS--GSSTMRKEESVEFRTKNTSYYY--------QGRILKI 579
                +           VS     S T+ + +   +                     LK 
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNL--MGTIPSTFSHLSQIESLDLSYNM 637
           +  L  + NK           L  +  L+LS N L   G    +    + ++ LDLS+N 
Sbjct: 327 LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 638 LQGKIPTQLVELYALAIFSVAHNNLS 663
           +   + +  + L  L      H+NL 
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (258), Expect = 5e-23
 Identities = 72/409 (17%), Positives = 121/409 (29%), Gaps = 57/409 (13%)

Query: 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF- 327
            IP  +       ++ ++S N L      S         LQ+L LS   +Q  I   ++ 
Sbjct: 21  KIPDNLP---FSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQ-TIEDGAYQ 73

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           +L++L TL L  N             S L  L   + +++      +G+L  L ++ + +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 388 NHL-EGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS-----WLLTQVHLSRNKIEGQL 441
           N +    +P     L  L  LDL  N I     +          L   + LS N +    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 442 EDVFGDI-LVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGE---VPVQLCLLKQ 496
              F +I L  L L  N  S  +    I  L+ L    L       E          L+ 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 497 LQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR 556
           L  + +    L+           L     + ++ +                         
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--------------- 298

Query: 557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMG 616
                 +                   L+L   K      F    L  ++ L  + N    
Sbjct: 299 ---DFSYNFGWQH-------------LELVNCKFGQ---FPTLKLKSLKRLTFTSNKG-- 337

Query: 617 TIPSTFSHLSQIESLDLSYNMLQ--GKIPTQLVELYALAIFSVAHNNLS 663
               +   L  +E LDLS N L   G          +L    ++ N + 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 13/197 (6%)

Query: 15  PNLETLELRDYHLELLNF--------TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRN 66
           P+LE L+L    L             T+L+ L L  + +      +   L  ++HL  ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 67  CYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSP 126
             L   S+F     L +L  L I + +           ++SL +L +A N    N     
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 127 LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNI 186
              L +L  L +S  Q +  +S   F + S L+      N+L   +          LQ I
Sbjct: 466 FTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKI 523

Query: 187 SLSGCR--CDFTFPRFL 201
            L      C      +L
Sbjct: 524 WLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQGK 641
           LDLS N +   +      L  +  L+  H+NL      S F  L  +  LD+S+   +  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRV 670
                  L +L +  +A N+        +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 584 DLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIP 643
                    +IP  +      + L+LS N L      +F    +++ LDLS   +Q    
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 644 TQLVELYALAIFSVAHNNLS 663
                L  L+   +  N + 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LD   + L     F +   L  +  L++SH +        F+ LS +E L ++ N  Q  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 642 IPTQ-LVELYALAIFSVAHNNLS 663
                  EL  L    ++   L 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L ++ N         I   L  +  L+LS   L    P+ F+ LS ++ L+++ N L+  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
                  L +L    +  N   
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (365), Expect = 1e-36
 Identities = 68/429 (15%), Positives = 155/429 (36%), Gaps = 36/429 (8%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
            +++ LD++ N+IT  I    LR   +L+ L + +++    I  + F++   L+      
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCR-CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNW 224
           N L   + S    P   L+ ++L G                 L+ + + ++    E    
Sbjct: 84  NHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 225 LLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF 284
                  L  L +   SL  +    +  ++ +  + +  +     +       L  + + 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYL 201

Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVT---------- 334
            +    L       L +      ++ LA   + L    F+    L   +           
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 335 -----LQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
                   + ++         +    +  L++   ++   +      L  +  I + N+ 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 390 LEGPIPANLCK-LNFLTVLDLEVNNISGSL---PSCFSSWL-LTQVHLSRNKIEGQLEDV 444
           +   +P +  + L  L  LDL  N +        +C  +W  L  + LS+N +   ++  
Sbjct: 322 VFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKT 379

Query: 445 FGDI-----LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQL 499
              +     L +LD+S N F   +P+       + +L L++  +     V+ C+ + L++
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEV 435

Query: 500 IDLSHNNLS 508
           +D+S+NNL 
Sbjct: 436 LDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (364), Expect = 2e-36
 Identities = 86/501 (17%), Positives = 173/501 (34%), Gaps = 41/501 (8%)

Query: 32  FTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGY 91
              ++ L L  + +       +    +++ L +++  +  T +      L  L+ L +  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSD 83

Query: 92  NNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEP 151
           N++          ++SL+ L++  N       +S    LT+L+ LR+ N +    I    
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 152 FFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVD 211
           F   + L +   +   L    +S SL     + +++L      F    F      +RY++
Sbjct: 144 FAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 212 LSHMNLRGEFPNWL--LENNKELETLLLANNSLSGF-------FQMPVNPLKQLTTIDVS 262
           L   NL     + L   E +  ++ L    + L+             +  L ++   D +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 263 KNFIQGHIPTGIGAF-------LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN 315
            N +    P+               +   +I +  L   +            ++ + + N
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS---LLEKVKRITVEN 319

Query: 316 NSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGL---YLSDNHIS--GK 369
           + +   +      +L +L  L L  N       +N         L    LS NH+    K
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 370 IPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSC-FSSWLLT 428
             + L  L NL  + +  N    P+P +      +  L+L    I   + +C   +  L 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LE 434

Query: 429 QVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE 486
            + +S N     L+     +  L  L +S N+    +P+       L  + ++ N L+  
Sbjct: 435 VLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSV 488

Query: 487 VPVQLCLLKQLQLIDLSHNNL 507
                  L  LQ I L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (268), Expect = 2e-24
 Identities = 60/456 (13%), Positives = 147/456 (32%), Gaps = 80/456 (17%)

Query: 15  PNLETLELRDYHL-------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
            NL+TL + +          +    T+L  L +   +L                      
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-------------------- 162

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
             Y +   + +     +  L +  +     L      ++S+R L++    +      SPL
Sbjct: 163 --YQSQSLKSIR---DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPL 216

Query: 128 RYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
                   ++    +  + ++ E F    KL ++  + + +  +  + +    F      
Sbjct: 217 PVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 188 LSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQ 247
           +     +      +     +R + +          + +    ++++ + + N+ +     
Sbjct: 276 VV---SELGKVETVT----IRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 248 MPVNPLKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSLHMTMGC 305
                LK L  +D+S+N +              P L+   +S+N L  S+  +  + +  
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL 386

Query: 306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
            +L  L +S N+    +         +  L L +      +   +     L  L +S+N+
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNN 442

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW 425
           +                               L +   L  L +  N +  +LP      
Sbjct: 443 LDS-------------------------FSLFLPR---LQELYISRNKLK-TLPDASLFP 473

Query: 426 LLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRF 459
           +L  + +SRN+++   + +F  +  L  + L  N +
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (262), Expect = 1e-23
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 30/381 (7%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           +++ L LS N +  +I         NL  L L +++      +   +   L  L LSDNH
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHL-EGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS 424
           +S     W G LS+L  + +  N      + +    L  L  L +        +     +
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 425 WL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
            L  L ++ +    +          I  +  L L  +  +  +  + D LS + YL L +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 481 NNLEGEVPVQLCLLKQLQLI-DLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGAS 539
            NL       L + +    +  L+      T  S      L     + +    +      
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 540 SPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG 599
                   +PS S  + +   VE                 +  L +    L  ++     
Sbjct: 266 LG----DFNPSESDVVSELGKVE--------------TVTIRRLHIPQFYLFYDLSTVYS 307

Query: 600 YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALA---IFS 656
            L  ++ + + ++ +     S   HL  +E LDLS N++  +         A        
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 657 VAHNNLSGKVPDRVGQFATFT 677
           ++ N+L   +        T  
Sbjct: 368 LSQNHLR-SMQKTGEILLTLK 387

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 3e-23
 Identities = 50/322 (15%), Positives = 111/322 (34%), Gaps = 31/322 (9%)

Query: 210 VDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGH 269
            D    +     P+ L      +++L L+ N ++      +     L  + +  + I   
Sbjct: 10  CDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-N 328
           I       L  LEH ++S N L+              SL+ L L  N  Q    +  F N
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 329 LTNLVTLQLDANQFTGGIPEN-LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           LTNL TL++   +    I        + L  L +    +     + L ++ ++  + +  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW-LLTQVHLSRNKIEGQLEDVFG 446
           +     +      L+ +  L+L   N++    S      + + +     +     ++ F 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 447 DI------------LVTLDLSYNRFSGRIPNWIDKLSH--------LSYLILANNNLEGE 486
           ++            +   D + N      P+  D +S         +  L +    L  +
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 487 VPVQLCLLKQLQLIDLSHNNLS 508
           +     LL++++ I + ++ + 
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.0 bits (247), Expect = 8e-22
 Identities = 68/346 (19%), Positives = 128/346 (36%), Gaps = 46/346 (13%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLE---------------LLNFTNLEVLILDGSALH 46
             + LL+       ++  LELRD +L                +        ++ D S   
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 47  IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQ----------GLCELVHLQELHIGYNNIGG 96
           +  L     +  +  +   +C L G  DF           G  E V ++ LHI    +  
Sbjct: 243 LLKLLRY--ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 97  TLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ--IPISFEPFFN 154
            L      +  ++ + + ++++   +  S  ++L SLE L +S N        +      
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 155 HSKLKKFYGQKNRL-FVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLS 213
              L+     +N L  ++     L     L ++ +S        P    +  ++R+++LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 214 HMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTG 273
              +R      + +    LE L ++NN+L  F       L +L  + +S+N ++  +P  
Sbjct: 419 STGIR-VVKTCIPQT---LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468

Query: 274 IGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ 319
             +  P L    ISRN L  S+P    +     SLQ + L  N   
Sbjct: 469 -ASLFPVLLVMKISRNQLK-SVP--DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 52/378 (13%), Positives = 121/378 (32%), Gaps = 25/378 (6%)

Query: 305 CFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDN 364
           C +  +    + S    I S       + +L L  N+ T     +L  C+ L  L L  +
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS 424
            I+        +L +L  + + +NHL     +    L+ L  L+L  N       +    
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 425 WL--LTQVHLSR-NKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILA 479
            L  L  + +             F  +  L  L++            +  +  + +L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 480 NNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGAS 539
            +     + +   +L  ++ ++L   NL+    S L    +       A   S       
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS------- 233

Query: 540 SPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG 599
                     +  S     + + +  + +   +    L  +   + S + +  E+     
Sbjct: 234 --------VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV-- 283

Query: 600 YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659
               IR L++    L   + + +S L +++ + +  + +     +    L +L    ++ 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 660 NNLSGKVPDRVGQFATFT 677
           N +  +          + 
Sbjct: 344 NLMVEEYLKNSACKGAWP 361

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 6e-20
 Identities = 65/415 (15%), Positives = 134/415 (32%), Gaps = 64/415 (15%)

Query: 13  PFPNLETLELRDYHLE------LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRN 66
              +L  LE++   L       L +  ++  L L  S           +L+SV++L +R+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 67  CYLYG--TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISS 124
             L     S          +++L                      + D + N++      
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKL----------------AFRGSVLTDESFNELL----- 244

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
             LRY+  L E+   +                 L  F   ++ +  E+          ++
Sbjct: 245 KLLRYILELSEVEFDDCTLN------------GLGDFNPSESDVVSELGKVETV---TIR 289

Query: 185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSG 244
            + +      +          +++ + + +  +    P    ++ K LE L L+ N +  
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 245 FF---QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSL 299
            +            L T+ +S+N ++  +         L  L   +ISRN  +  +P S 
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359
                   ++ L LS+  ++  + +       L  L +  N         L     L  L
Sbjct: 407 Q---WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPR---LQEL 456

Query: 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
           Y+S N +   +P        L+ + +  N L+        +L  L  + L  N  
Sbjct: 457 YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 2/106 (1%)

Query: 583 LDLSCNKLTG-EIPFQIGYLNMIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQG 640
           L+L  N      +      L  ++ L + +      I    F+ L+ +  L++    L+ 
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 641 KIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSL 686
                L  +  +   ++  +  +  +       ++         +L
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 583 LDLSCNKLT--GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ- 639
           L LS N L    +    +  L  + +L++S N     +P +     ++  L+LS   ++ 
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRV 424

Query: 640 --GKIPTQLVELYALAIFSVAHNNLS 663
               IP  L  L       V++NNL 
Sbjct: 425 VKTCIPQTLEVLD------VSNNNLD 444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (341), Expect = 7e-35
 Identities = 71/425 (16%), Positives = 145/425 (34%), Gaps = 80/425 (18%)

Query: 84  LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
              L      I    P    ++       +    +T          L S+ +L V+  + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 144 QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYY 203
               S +     + L+      N++        ++P   L                    
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQI------TDISPLSNLVK------------------ 89

Query: 204 QHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSK 263
              L  + +    +  +     L+N   L  L L  +++S     P+  L ++ ++++  
Sbjct: 90  ---LTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGA 141

Query: 264 NFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIF 323
           N     +   +   +  L +  ++ + +    P +         L  L+L+ N ++    
Sbjct: 142 NHNLSDLS-PLSN-MTGLNYLTVTESKVKDVTPIA-----NLTDLYSLSLNYNQIED--I 192

Query: 324 SRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDI 383
           S   +LT+L       NQ T      + N + L  L + +N I+   P  L NLS L  +
Sbjct: 193 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 384 IMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLED 443
            +  N +       +  L  L +L++  N IS    S  ++  L+Q              
Sbjct: 249 EIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNN--LSQ-------------- 288

Query: 444 VFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
                L +L L+ N+        I  L++L+ L L+ N++    P  L  L ++   D +
Sbjct: 289 -----LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 504 HNNLS 508
           +  + 
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 2e-34
 Identities = 75/376 (19%), Positives = 138/376 (36%), Gaps = 34/376 (9%)

Query: 40  LDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLP 99
           L      I  +   A L       ++   +   +D     EL  + +L +    +     
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVASIQG 61

Query: 100 WCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLK 159
             +  +T+L  L++  NQIT     SPL  L  L  L +  N+           N + L+
Sbjct: 62  --IEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLR 113

Query: 160 KFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRG 219
           + Y  ++ +       +LT   ++ +++L     + +    L     L Y+ ++   ++ 
Sbjct: 114 ELYLNEDNISDISPLANLT---KMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKD 169

Query: 220 EFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLP 279
             P   + N  +L +L L  N +      P+  L  L       N I    P      + 
Sbjct: 170 VTP---IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPVA---NMT 221

Query: 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDA 339
           RL    I  N +    P +         L  L +  N +     +   +LT L  L + +
Sbjct: 222 RLNSLKIGNNKITDLSPLA-----NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC 399
           NQ +      L N S L  L+L++N +  +  + +G L+NL  + +  NH+    P  L 
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 400 KLNFLTVLDLEVNNIS 415
            L+ +   D     I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (305), Expect = 4e-30
 Identities = 77/405 (19%), Positives = 137/405 (33%), Gaps = 78/405 (19%)

Query: 108 LRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNR 167
              L      I       P   L       +        ++ E       + K      +
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAGEK 55

Query: 168 LFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLE 227
           +       S+     L N                     L Y++L+   +    P   L 
Sbjct: 56  V------ASIQGIEYLTN---------------------LEYLNLNGNQITDISP---LS 85

Query: 228 NNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNIS 287
           N  +L  L +  N ++      +  L  L  + ++++ I    P      L ++   N+ 
Sbjct: 86  NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLA---NLTKMYSLNLG 140

Query: 288 RNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIP 347
            N     +    +MT     L  L ++ + ++    +   NLT+L +L L+ NQ      
Sbjct: 141 ANHNLSDLSPLSNMT----GLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--I 192

Query: 348 ENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVL 407
             L + + L       N I+   P  + N++ L  + + NN +    P  L  L+ LT L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 408 DLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWI 467
           ++  N IS    +      LT+                   L  L++  N+ S  I   +
Sbjct: 249 EIGTNQISD--INAVKD--LTK-------------------LKMLNVGSNQISD-ISV-L 283

Query: 468 DKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
           + LS L+ L L NN L  E    +  L  L  + LS N+++   P
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 1e-26
 Identities = 64/317 (20%), Positives = 121/317 (38%), Gaps = 39/317 (12%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
           E     L   ++         E  + +  L++A   ++      +  L  L  ++++ N 
Sbjct: 23  EGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQ 77

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR 325
           I    P      L +L +  I  N +   I    ++T    +L+ L L+ +++     S 
Sbjct: 78  ITDISPLS---NLVKLTNLYIGTNKIT-DISALQNLT----NLRELYLNEDNISD--ISP 127

Query: 326 SFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIM 385
             NLT + +L L AN         L N + L  L ++++ +    P  + NL++L  + +
Sbjct: 128 LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 386 PNNHLEGPIPANLCKLNFLTVLDLEVNNIS-----GSLPSCFSSWLLTQVHLSRNKIEGQ 440
             N +E   P  L  L  L      VN I+      ++        L  + +  NKI   
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTR------LNSLKIGNNKITD- 235

Query: 441 LEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQ 498
                 ++  L  L++  N+ S  I   +  L+ L  L + +N +       L  L QL 
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISDISV--LNNLSQLN 290

Query: 499 LIDLSHNNLSGTIPSCL 515
            + L++N L       +
Sbjct: 291 SLFLNNNQLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 4e-25
 Identities = 59/310 (19%), Positives = 123/310 (39%), Gaps = 32/310 (10%)

Query: 14  FPNLETLELRDYHL----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
             NLE L L    +     L N   L  L +  +   I  + ++  LT+++ L +    +
Sbjct: 65  LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN--KITDISALQNLTNLRELYLNEDNI 122

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
              SD   L  L  +  L++G N+   +    L NMT L  L +  +++      +P+  
Sbjct: 123 ---SDISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK---DVTPIAN 175

Query: 130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS 189
           LT L  L ++ NQ +      P  + + L  F    N++       ++T   +L ++ + 
Sbjct: 176 LTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDITPVANMT---RLNSLKIG 229

Query: 190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMP 249
             +   T    L    +L ++++    +        +++  +L+ L + +N +S      
Sbjct: 230 NNK--ITDLSPLANLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSNQISDI--SV 282

Query: 250 VNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ 309
           +N L QL ++ ++ N +       IG  L  L    +S+N +    P +         + 
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRPLA-----SLSKMD 336

Query: 310 ILALSNNSLQ 319
               +N  ++
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L++  N+++      +  L+ + +L L++N L          L+ + +L LS N +    
Sbjct: 270 LNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P  L  L  +     A+  + 
Sbjct: 328 P--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L++  N+++         L  ++ LN+  N +  +  S  ++LSQ+ SL L+ N L  + 
Sbjct: 248 LEIGTNQISDINAV--KDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
              +  L  L    ++ N+++ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L+ N++T   P     L  +  L +  N +  T  S   +L+ +  L L+ + +    
Sbjct: 71  LNLNGNQITDISPL--SNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS 126

Query: 643 PTQLVELYALAIFSVAHNNLSGKVP 667
           P  L  L  +   ++  N+    + 
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L+ + ++   P     L  + +LNL  N+ + +  S  S+++ +  L ++ + ++   
Sbjct: 115 LYLNEDNISDISPL--ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  +  L  L   S+ +N +  
Sbjct: 172 P--IANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
                N++T   P  +  +  + +L + +N +    P   ++LSQ+  L++  N +    
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
              + +L  L + +V  N +S 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L ++ +K+    P     L  + +L+L++N +    P   + L+ +       N +    
Sbjct: 160 LTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 643 PTQLVELYALAIFSVAHNNLSG 664
           P  +  +  L    + +N ++ 
Sbjct: 216 P--VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
             L    +T  +      L  I  L ++   +         +L+ +E L+L+ N +    
Sbjct: 27  AVLQKASVTDVVTQ--EELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDIS 82

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P  L  L  L    +  N ++
Sbjct: 83  P--LSNLVKLTNLYIGTNKIT 101

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 2e-31
 Identities = 64/359 (17%), Positives = 133/359 (37%), Gaps = 27/359 (7%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
                ++HI          +  + + + +I+   ++ +   + ++ L     +E L +++
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 78

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
            Q +  I    F     ++K Y   N +   +  H       L  + L            
Sbjct: 79  LQIEE-IDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
            +   +L  + +S+ NL     +   +    L+ L L++N L+      ++ +  L   +
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           VS N +   +          +E  + S N +N  +   +        L IL L +N+L  
Sbjct: 193 VSYNLLS-TLAI-----PIAVEELDASHNSIN-VVRGPV-----NVELTILKLQHNNLTD 240

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHISGKIPKWLGNLSN 379
              +   N   LV + L  N+    I  +       L  LY+S+N +   +  +   +  
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE 438
           L  + + +NHL   +  N  + + L  L L+ N+I     S   +  L  + LS N  +
Sbjct: 297 LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHT--LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (304), Expect = 1e-29
 Identities = 71/334 (21%), Positives = 141/334 (42%), Gaps = 24/334 (7%)

Query: 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS 241
              ++ +     D  F       +  + V   +  +R + P  LL++ +++E L L +  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHM 301
           +             +  + +  N I+ ++P  +   +P L    + RN L+ S+P    +
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP--RGI 136

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLY 360
                 L  L++SNN+L+  I   +F   T+L  LQL +N+ T  +  +L+    L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--PSLFHAN 192

Query: 361 LSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS 420
           +S N +S      L     + ++   +N +   +   +     LT+L L+ NN++     
Sbjct: 193 VSYNLLST-----LAIPIAVEELDASHNSINV-VRGPVNV--ELTILKLQHNNLT-DTAW 243

Query: 421 CFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
             +   L +V LS N++E  +   F  +  L  L +S NR    +  +   +  L  L L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 479 ANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
           ++N+L   V        +L+ + L HN++  T+ 
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (288), Expect = 1e-27
 Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 28/320 (8%)

Query: 195 FTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLK 254
                 L Y      V +  M  +  +  +        + +   N+++       ++  +
Sbjct: 11  KCIDSNLQYDCVFYDVHID-MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS 314
           Q+  ++++   I+  I T   A+   ++   +  N +   +P   H+      L +L L 
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLP--PHVFQNVPLLTVLVLE 125

Query: 315 NN---SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHISGKI 370
            N   SL   IF    N   L TL +  N     I ++     + L  L LS N ++  +
Sbjct: 126 RNDLSSLPRGIFH---NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HV 180

Query: 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
              L  + +L    +  N L       L     +  LD   N+I+           LT +
Sbjct: 181 D--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE--LTIL 231

Query: 431 HLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488
            L  N +         +   LV +DLSYN     + +   K+  L  L ++NN L   + 
Sbjct: 232 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 288

Query: 489 VQLCLLKQLQLIDLSHNNLS 508
           +    +  L+++DLSHN+L 
Sbjct: 289 LYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 2e-27
 Identities = 62/305 (20%), Positives = 115/305 (37%), Gaps = 26/305 (8%)

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFI 266
           +  ++L+ + +  E   +       ++ L +  N++          +  LT + + +N +
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 267 QGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRS 326
              +P GI    P+L   ++S N L   I           SLQ L LS+N L       S
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIE--DDTFQATTSLQNLQLSSNRLTH--VDLS 183

Query: 327 FNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386
             + +L    +  N  +      L     +  L  S N I+  +         L  + + 
Sbjct: 184 -LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 234

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVF 445
           +N+L       L     L  +DL  N +   +   F     L ++++S N++   L    
Sbjct: 235 HNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 446 GDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
             I  L  LDLS+N     +     +   L  L L +N++     ++L     L+ + LS
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLS 347

Query: 504 HNNLS 508
           HN+  
Sbjct: 348 HNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 5e-26
 Identities = 69/359 (19%), Positives = 129/359 (35%), Gaps = 36/359 (10%)

Query: 27  LELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYG--TSDFQGLCELVHL 84
            E +   N +++    S +       +     V+ L++ +  +    T  F        +
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTI 95

Query: 85  QELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           Q+L++G+N I    P    N+  L +L +  N ++ ++          L  L +SNN  +
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 145 IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQ 204
             I  + F   + L+      NRL   ++   +     L + ++S           L   
Sbjct: 155 R-IEDDTFQATTSLQNLQLSSNRL-THVDLSLIP---SLFHANVSYNL-----LSTLAIP 204

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS--GFFQMPVNPLKQLTTIDVS 262
             +  +D SH ++       +      L  L L +N+L+   +          L  +D+S
Sbjct: 205 IAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLL----NYPGLVEVDLS 256

Query: 263 KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI 322
            N ++  I       + RLE   IS N L  ++           +L++L LS+N L  H+
Sbjct: 257 YNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ---PIPTLKVLDLSHNHLL-HV 310

Query: 323 FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISG-KIPKWLGNLSNL 380
                    L  L LD N     +  +      L  L LS N      +     N++  
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L +S N+L   +      +  ++ L+LSHN+L+  +        ++E+L L +N +   +
Sbjct: 277 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TL 333

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691
                  + L   +++HN+           F      + D     C   
Sbjct: 334 KLST--HHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L  N LT +  + +     +  ++LS+N L   +   F  + ++E L +S N L   +
Sbjct: 231 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 643 PTQLVELYALAIFSVAHNNLS 663
                 +  L +  ++HN+L 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L L  N L+  +P  I      +  L++S+NNL      TF   + +++L LS N L   
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
             + +  L+     +V++N LS
Sbjct: 181 DLSLIPSLFHA---NVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 17/81 (20%), Positives = 32/81 (39%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L+  ++     +   Y + I+ L +  N +    P  F ++  +  L L  N L    
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 643 PTQLVELYALAIFSVAHNNLS 663
                    L   S+++NNL 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLE 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 8e-31
 Identities = 59/389 (15%), Positives = 116/389 (29%), Gaps = 26/389 (6%)

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILA 312
             +     V+ + ++      +      ++  ++S N L+      L        L++L 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLA---PFTKLELLN 64

Query: 313 LSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPK 372
           LS+N L         +L+ L TL L+ N         LL    +  L+ ++N+IS ++  
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS- 115

Query: 373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQV 430
                    +I + NN +      +    + +  LDL++N I     +  ++    L  +
Sbjct: 116 -CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ 490
           +L  N I      V    L TLDLS N+ +  +       + ++++ L NN L   +   
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 491 LCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPS 550
           L   + L+  DL  N          +                                  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 551 GSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLS 610
                        R             K    L    ++    +  +       R ++  
Sbjct: 293 AYCCEDLPAPFADRLIALK-------RKEHALLSGQGSETE-RLECERENQARQREIDAL 344

Query: 611 HNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
                  I           +L+     L 
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 1e-29
 Identities = 60/460 (13%), Positives = 132/460 (28%), Gaps = 30/460 (6%)

Query: 56  LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
               K   + +  L   +         +++EL +  N +       L   T L +L+++S
Sbjct: 9   GNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESH 175
           N +     +  L  L++L  L ++NN  Q             ++  +   N +   +   
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI-SRVSCS 117

Query: 176 SLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETL 235
                   +NI L+  +           +  ++Y+DL    +       L  ++  LE L
Sbjct: 118 RGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 236 LLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295
            L  N +            +L T+D+S N +   +     +    +   ++  N L   I
Sbjct: 175 NLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LI 229

Query: 296 PCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSL 355
             +L       +L+   L  N        R F   N     +          +N   C++
Sbjct: 230 EKALR---FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG----PIPANLCKLNFLTVLDLEV 411
               +            +   L  L          +G     +            +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 412 NNISGSLPSCFSSW-LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFS-GRIPNWIDK 469
                 +            +   +  ++ Q+ +                    + +  ++
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 470 LSHLSYLI-LANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            S L  L  +     E  V  Q      ++  D+  +  +
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 4e-28
 Identities = 64/461 (13%), Positives = 139/461 (30%), Gaps = 79/461 (17%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
               +   +  +++   L     +  +++ LD++ N ++  IS++ L   T LE L +S+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
           N     +  E                                                  
Sbjct: 68  NVLYETLDLESLST---------------------------------------------- 81

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
                 LR +DL++  ++       L     +ETL  ANN++S       +  +    I 
Sbjct: 82  ------LRTLDLNNNYVQE------LLVGPSIETLHAANNNISRV---SCSRGQGKKNIY 126

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           ++ N I   +         R+++ ++  N ++ ++  +  +     +L+ L L  N +  
Sbjct: 127 LANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFA-ELAASSDTLEHLNLQYNFIY- 182

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNL 380
                      L TL L +N+    +     + + +  + L +N +   I K L    NL
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 381 VDIIMPNNHLE-GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG 439
               +  N    G +     K   +  +  +             + + T  H      E 
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCE- 297

Query: 440 QLEDVFGDILVTLDLSYNRF-------SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC 492
            L   F D L+ L    +         + R+    +  +    +          +     
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 493 LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSE 533
             +    ++     L   + +     A  +G    A    E
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 4e-20
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           N       ++  +     +     +   +  L LS N +S      L   + L  + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD 447
           N L   +   L  L+ L  LDL  N +   L    S   +  +H + N I  ++    G 
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS---IETLHAANNNIS-RVSCSRGQ 120

Query: 448 ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG-EVPVQLCLLKQLQLIDLSHNN 506
               + L+ N+ +          S + YL L  N ++             L+ ++L +N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 507 LSGTIPSCLYKTAL 520
           +   +   +    L
Sbjct: 181 IY-DVKGQVVFAKL 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 65/423 (15%), Positives = 127/423 (30%), Gaps = 31/423 (7%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHL----ELLNFTNLEVLILDGSALHIRFLQSIAVLT 57
            +S +  +   PF  LE L L    L    +L + + L  L L+ + +     Q + V  
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGP 99

Query: 58  SVKHLSMRNCYLYG--TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
           S++ L   N  +     S  QG       + +++  N I           + ++ LD+  
Sbjct: 100 SIETLHAANNNISRVSCSRGQGK------KNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL-FVEIES 174
           N+I     +       +LE L +  N        +     +KLK      N+L F+  E 
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 175 HSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELET 234
            S      +  ISL   +      + L +   L + DL                N+ ++T
Sbjct: 211 QSAA---GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 235 LLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGS 294
             +A  ++              T         +  +P      L  L+    +     GS
Sbjct: 267 --VAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGS 323

Query: 295 IPCSLHMTMGCF-SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNC 353
               L          + +       +  I   +      +TL+         +       
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIM-PNNHLEGPIPANLCKLNFLTVLDLEVN 412
           + L G          ++       S L  +      + E  +     + N +   D+  +
Sbjct: 384 AELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 413 NIS 415
             +
Sbjct: 443 KET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
             ++ + L   +         ++ L+LS N L     +  +  +++E L+LS N+L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 643 PTQLVELYALAIFSVAHNNLS 663
              L  L  L    + +N + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 441 LEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQ 498
           + ++  +        ++ +     + +      ++  L L+ N L       L    +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 499 LIDLSHNNLSGTIP 512
           L++LS N L  T+ 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 583 LDLSCNKLTG-EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LDL  N++            + +  LNL +N +           +++++LDLS N L   
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-F 205

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
           +  +      +   S+ +N L   +   +            GN   CG    
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660
            N  +   ++ ++L   + S       ++ LDLS N L       L     L + +++ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 661 NLSG 664
            L  
Sbjct: 69  VLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG-K 641
           L  + N ++  +          + + L++N +           S+++ LDL  N +    
Sbjct: 104 LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
                     L   ++ +N + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (313), Expect = 7e-30
 Identities = 63/358 (17%), Positives = 133/358 (37%), Gaps = 25/358 (6%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
                ++HI          +  + + + +I+   ++ +   + ++ L     +E L +++
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
            Q +  I    F     ++K Y   N +   +  H       L  + L            
Sbjct: 85  LQIEE-IDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
            +   +L  + +S+ NL     +   +    L+ L L++N L+      ++ +  L   +
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 198

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           VS N +   +          +E  + S N +N  +   +        L IL L +N+L  
Sbjct: 199 VSYNLLS-TLAI-----PIAVEELDASHNSIN-VVRGPV-----NVELTILKLQHNNLTD 246

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNL 380
              +   N   LV + L  N+    +    +    L  LY+S+N +   +  +   +  L
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 381 VDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE 438
             + + +NHL   +  N  + + L  L L+ N+I     S   +  L  + LS N  +
Sbjct: 304 KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHT--LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 1e-27
 Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 23/336 (6%)

Query: 176 SLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETL 235
           +L       ++ +     D  F       +  + V   +  +R + P  LL++ +++E L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 236 LLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI 295
            L +  +             +  + +  N I+ ++P  +   +P L    + RN L+ S+
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SL 138

Query: 296 PCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCS 354
           P  +        L  L++SNN+L+  I   +F   T+L  LQL +N+ T  +  +L+   
Sbjct: 139 PRGIFHNTP--KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--P 192

Query: 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
            L    +S N +S      L     + ++   +N +   +   +     LT+L L+ NN+
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPVNV--ELTILKLQHNNL 244

Query: 415 SGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSH 472
           +       +   L +V LS N++E  +   F  +  L  L +S NR    +  +   +  
Sbjct: 245 T-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 302

Query: 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
           L  L L++N+L   V        +L+ + L HN++ 
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (283), Expect = 3e-26
 Identities = 62/305 (20%), Positives = 115/305 (37%), Gaps = 26/305 (8%)

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFI 266
           +  ++L+ + +  E   +       ++ L +  N++          +  LT + + +N +
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 267 QGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRS 326
              +P GI    P+L   ++S N L   I           SLQ L LS+N L     S  
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIE--DDTFQATTSLQNLQLSSNRLTHVDLS-- 189

Query: 327 FNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386
             + +L    +  N  +      L     +  L  S N I+  +         L  + + 
Sbjct: 190 -LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 240

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVF 445
           +N+L       L     L  +DL  N +   +   F     L ++++S N++   L    
Sbjct: 241 HNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 446 GDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
             I  L  LDLS+N     +     +   L  L L +N++     ++L     L+ + LS
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLS 353

Query: 504 HNNLS 508
           HN+  
Sbjct: 354 HNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 5e-25
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 39/347 (11%)

Query: 27  LELLNFTNLEVLILDGSALHIRFLQSIAV--LTSVKHLSMRNCYLYG--TSDFQGLCELV 82
            E +   N +++    S   +R L +  +     V+ L++ +  +    T  F       
Sbjct: 45  FEDITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---H 99

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
            +Q+L++G+N I    P    N+  L +L +  N ++ ++          L  L +SNN 
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158

Query: 143 FQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202
            +  I  + F   + L+      NRL   ++   +     L + ++S           L 
Sbjct: 159 LER-IEDDTFQATTSLQNLQLSSNRL-THVDLSLIP---SLFHANVSYNL-----LSTLA 208

Query: 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS--GFFQMPVNPLKQLTTID 260
               +  +D SH ++       +      L  L L +N+L+   +          L  +D
Sbjct: 209 IPIAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLL----NYPGLVEVD 260

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           +S N ++  I       + RLE   IS N L  ++           +L++L LS+N L  
Sbjct: 261 LSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ---PIPTLKVLDLSHNHLL- 314

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS 367
           H+         L  L LD N     +  +      L  L LS N   
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 3/166 (1%)

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
           I  NL    +   +++               L+N   +   N+ +     A L     + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 406 VLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGR 462
           +L+L    I       F+    + ++++  N I      VF ++  L  L L  N  S  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
                     L+ L ++NNNLE            LQ + LS N L+
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L +S N+L   +      +  ++ L+LSHN+L+  +        ++E+L L +N +    
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
            +    L  L +   +HN+           F      + D     C     
Sbjct: 341 LSTHHTLKNLTL---SHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQ 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L  N LT +    +     +  ++LS+N L   +   F  + ++E L +S N L   +
Sbjct: 237 LKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 643 PTQLVELYALAIFSVAHNNLS 663
                 +  L +  ++HN+L 
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L L  N L+  +P  I      +  L++S+NNL      TF   + +++L LS N L   
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
             + +  L+     +V++N LS
Sbjct: 187 DLSLIPSLFHA---NVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 32/81 (39%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L+  ++     +   Y + I+ L +  N +    P  F ++  +  L L  N L    
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 643 PTQLVELYALAIFSVAHNNLS 663
                    L   S+++NNL 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLE 160

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 1e-29
 Identities = 61/329 (18%), Positives = 116/329 (35%), Gaps = 26/329 (7%)

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQM 248
             C C            + R V           P  +         L L  N +    Q 
Sbjct: 5   PRCECS----------AQDRAVLCHRKRFV-AVPEGIPTE---TRLLDLGKNRIKTLNQD 50

Query: 249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL 308
                  L  +++++N +   +  G    L  L    +  N L   IP    +  G  +L
Sbjct: 51  EFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPL--GVFTGLSNL 106

Query: 309 QILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHI 366
             L +S N +   +    F +L NL +L++  N     I        + L  L L   ++
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNL 164

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL 426
           +    + L +L  L+ + + + ++      +  +L  L VL++       ++       L
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 427 -LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
            LT + ++   +          +  L  L+LSYN  S    + + +L  L  + L    L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 484 EGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
               P     L  L+++++S N L+ T+ 
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 2e-28
 Identities = 68/313 (21%), Positives = 117/313 (37%), Gaps = 22/313 (7%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
           E R +DL    ++         +   LE L L  N +S       N L  L T+ +  N 
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF----SLQILALSNNSLQGH 321
           ++  IP G+   L  L   +IS N +   +          F    +L+ L + +N L  +
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIV-ILL------DYMFQDLYNLKSLEVGDNDLV-Y 142

Query: 322 IFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHISGKIPKWLGNLSN 379
           I  R+F  L +L  L L+    T  IP   L +   L  L L   +I+         L  
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSC-FSS-WLLTQVHLSRNKI 437
           L  + + +      +  N      LT L +   N++ ++P         L  ++LS N I
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 438 EGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLK 495
                 +  ++  L  + L   + +   P     L++L  L ++ N L          + 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 496 QLQLIDLSHNNLS 508
            L+ + L  N L+
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 5e-28
 Identities = 69/334 (20%), Positives = 117/334 (35%), Gaps = 35/334 (10%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
           T  R+LD+  N+I   ++         LEEL ++ N     +    F N   L+    + 
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           NRL   I     T    L  + +S                          N      +++
Sbjct: 90  NRL-KLIPLGVFTGLSNLTKLDISE-------------------------NKIVILLDYM 123

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
            ++   L++L + +N L        + L  L  + + K  +   IPT   + L  L    
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG 345
           +    +N     S       + L++L +S+      +        NL +L +     T  
Sbjct: 183 LRHLNINAIRDYSFK---RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-A 238

Query: 346 IPENLL-NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFL 404
           +P   + +   L  L LS N IS      L  L  L +I +    L    P     LN+L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 405 TVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKI 437
            VL++  N ++    S F S   L  + L  N +
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 9e-27
 Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 23/316 (7%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV--LTSVKHLSMR 65
                 L+L    ++ L      +F +LE L L+ +   +  ++  A   L +++ L +R
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLR 88

Query: 66  NCYLYGTSD--FQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNIS 123
           +  L       F GL    +L +L I  N I   L +   ++ +L+ L++  N +   IS
Sbjct: 89  SNRLKLIPLGVFTGL---SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 124 SSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQL 183
                 L SLE+L +        I  E   +   L     +   +   I  +S    ++L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRL 202

Query: 184 QNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS 243
           + + +S      T      Y   L  + ++H NL    P   + +   L  L L+ N +S
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 244 GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTM 303
                 ++ L +L  I +    +   +       L  L   N+S N L  ++  S+  ++
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSV 319

Query: 304 GCFSLQILALSNNSLQ 319
           G  +L+ L L +N L 
Sbjct: 320 G--NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 6/211 (2%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
             ++L L  N ++  +    F +  +L  L+L+ N  +   P    N   L  L L  N 
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW 425
           +          LSNL  + +  N +   +      L  L  L++  N++       FS  
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 426 L-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
             L Q+ L +  +     +    +  L+ L L +   +        +L  L  L +++  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
               +         L  + ++H NL+  +P 
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 70/350 (20%), Positives = 118/350 (33%), Gaps = 48/350 (13%)

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
           +PE +   +    L L  N I         +  +L ++ +  N +    P     L  L 
Sbjct: 26  VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 406 VLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSG 461
            L L  N +   +P    + L  LT++ +S NKI   L+ +F D+  L +L++  N    
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 462 RIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYK--TA 519
                   L+ L  L L   NL       L  L  L ++ L H N++  I    +K    
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYR 201

Query: 520 LGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKI 579
           L                        + +  S    +           N +          
Sbjct: 202 L------------------------KVLEISHWPYLDTMTPNCLYGLNLTS--------- 228

Query: 580 MFGLDLSCNKLTGEIPFQ-IGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
              L ++   LT  +P+  + +L  +R LNLS+N +     S    L +++ + L    L
Sbjct: 229 ---LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 639 QGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
               P     L  L + +V+ N L+                  D N L C
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAV 55
           N++++    +     L+ LE+  +          L   NL  L +     ++  +  +AV
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC--NLTAVPYLAV 244

Query: 56  --LTSVKHLSMRNCYLY--GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRIL 111
             L  ++ L++    +     S       L+ LQE+ +    +    P+    +  LR+L
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 112 DIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           +++ NQ+T  +  S    + +LE L + +N   
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           +     +    +P  I      R L+L  N +       F+    +E L+L+ N++    
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P     L+ L    +  N L 
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK 93

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (306), Expect = 3e-29
 Identities = 76/433 (17%), Positives = 141/433 (32%), Gaps = 26/433 (6%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
              L+ L + +N +   +        +L+ LD++ N             ++ L+ L +S 
Sbjct: 68  NQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
              +   S  P  + +  K           + +   L         SL           F
Sbjct: 125 THLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ---DFNTESLHIVFPTNKEFHF 180

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
           +         +L   N++    +        +   L  N  LS            L  I+
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL---------TLNNIE 231

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF--SLQILALSNNSL 318
            + N     I   +  +   + +F+IS   L G +        G    +L I  + ++  
Sbjct: 232 TTWNSFI-RILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 319 QGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLS 378
                      +N+       +             S    L  S+N ++  + +  G+L+
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348

Query: 379 NLVDIIMPNNHLE--GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSR 434
            L  +I+  N L+    I     ++  L  LD+  N++S        SW   L  +++S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 435 NKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLL 494
           N +   +       +  LDL  N+    IP  + KL  L  L +A+N L+         L
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467

Query: 495 KQLQLIDLSHNNL 507
             LQ I L  N  
Sbjct: 468 TSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 67/442 (15%), Positives = 142/442 (32%), Gaps = 53/442 (11%)

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
               L+I  N I       +++++ LRIL I+ N+I   +  S  ++   LE L +S+N+
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 143 FQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202
               IS  P      LK      N               QL+ + LS    + +    + 
Sbjct: 81  LVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 203 YQHELRYVDLSHMNLRGEFPNWLLEN--NKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
           + +  + + +       +     L++   + L  +   N        + V  +  L   +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
                            +  +   N     L+       +  +   +L  +  + NS   
Sbjct: 197 -----------------IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNL 380
               +    T +    +   +  G +     + S      LS + +              
Sbjct: 240 --ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV------------- 284

Query: 381 VDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIE 438
                 ++    P        + + + +  V+     +     S +     +  S N + 
Sbjct: 285 ------SDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLT 337

Query: 439 GQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-L 493
             + +  G +  L TL L  N+     +I     ++  L  L ++ N++  +     C  
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 494 LKQLQLIDLSHNNLSGTIPSCL 515
            K L  +++S N L+ TI  CL
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 81/460 (17%), Positives = 157/460 (34%), Gaps = 56/460 (12%)

Query: 210 VDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGH 269
           VD S   L    P  L +       L ++ N +S  +   +  L +L  + +S N IQ +
Sbjct: 5   VDRSKNGLI-HVPKDLSQK---TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-N 328
           +   +  F   LE+ ++S N L   I C         +L+ L LS N+       + F N
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KISCH-PTV----NLKHLDLSFNAFDALPICKEFGN 113

Query: 329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
           ++ L  L L            + + ++   L +       K       L +     +   
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIV 171

Query: 389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI 448
                    +  ++  TV +LE++NI   L     S+ L+             +      
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI----------LAKLQTNPK 221

Query: 449 LVTLDLSYNRFSGRIPNWIDKL---SHLSYLILANNNLEGEVPVQL-----CLLKQLQLI 500
           L  L L+    +      I +L   + + Y  ++N  L+G++  +        LK L + 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 501 DLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEES 560
            +  +                   Y+  +  +  N+  S       + PS  S       
Sbjct: 282 QVVSDVFG----------FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH--- 328

Query: 561 VEFRTKNTSYYYQG--RILKIMFGLDLSCNKLTGEIPFQIGY---LNMIRALNLSHNNLM 615
           ++F     +         L  +  L L  N+L  E+         +  ++ L++S N++ 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 616 GTIPS-TFSHLSQIESLDLSYNMLQ----GKIPTQLVELY 650
                   S    + SL++S N+L       +P ++  L 
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 8e-13
 Identities = 56/376 (14%), Positives = 107/376 (28%), Gaps = 26/376 (6%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
              IL +S N +   +++    +L+ L  L +  N+              L  L LS N 
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEG-PIPANLCKLNFLTVLDLEVNNISGSLPSCFS- 423
           +         NL +L    +  N  +  PI      ++ L  L L   ++  S     + 
Sbjct: 81  LVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 424 -SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
            +     + L     E +  +       T  L     + +  ++I  +S  +   L  +N
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPA 542
           ++  +    C      L  L  N         L    L        +          +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNP-------KLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 543 AGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN 602
                S S      + +  +F    TS       LK +    +  +       +     +
Sbjct: 250 --WYFSISNVKLQGQLDFRDFDYSGTS-------LKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 603 MIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662
            +   N + +          S +S    LD S N+L   +      L  L    +  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 663 SGKVPDRVGQFATFTE 678
             ++            
Sbjct: 361 K-ELSKIAEMTTQMKS 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 44/248 (17%)

Query: 7   LQSLWTPFPNLETLELRDYHLELL---------NFTNLEVLILDGSALHIRFLQSIAVLT 57
            +       +L+ L +     ++           F+N+ +     S   +  +   + ++
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 58  SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWC---LVNMTSLRILDIA 114
              HL   N  L   + F+    L  L+ L +  N +   L         M SL+ LDI+
Sbjct: 325 PFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 115 SNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIES 174
            N ++ +       +  SL  L +S+N                             +   
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILT--------------------------DTIF 416

Query: 175 HSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELET 234
             L P  +++ + L   +   + P+ +     L+ ++++   L+   P+ + +    L+ 
Sbjct: 417 RCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472

Query: 235 LLLANNSL 242
           + L  N  
Sbjct: 473 IWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 15  PNLETLELRDYHLELL--------NFTNLEVLILDGSAL-HIRFLQSIAVLTSVKHLSMR 65
             LETL L+   L+ L           +L+ L +  +++ +       +   S+  L+M 
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 66  NCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSS 125
           +  L   +D    C    ++ L +  N I  ++P  +V + +L+ L++ASNQ+  ++   
Sbjct: 408 SNIL---TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462

Query: 126 PLRYLTSLEELRVSNNQFQ 144
               LTSL+++ +  N + 
Sbjct: 463 IFDRLTSLQKIWLHTNPWD 481

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 9e-29
 Identities = 94/514 (18%), Positives = 163/514 (31%), Gaps = 81/514 (15%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSM 64
           + LQ       NL  +      +E  N  +        S               +    +
Sbjct: 11  TFLQEPLRHSSNLTEM-----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 65  RNCYLYGTS----DFQGLCEL----VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN 116
           R+C          +  GL  L     HL+ L    N++   LP    ++ SL + +    
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHS 176
            ++             LE L VSNNQ +         N S LK      N L        
Sbjct: 125 ALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSL-------K 166

Query: 177 LTPKF--QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELET 234
             P     L+ I+    +        L     L  +   + +L+ + P+        LE+
Sbjct: 167 KLPDLPPSLEFIAAGNNQ--LEELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLES 219

Query: 235 LLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGS 294
           ++  NN L    ++    L  LTTI    N ++  +P         LE  N+  N L   
Sbjct: 220 IVAGNNILEELPELQN--LPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLT-D 271

Query: 295 IPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCS 354
           +P          SL  L +S N         S    NL  L   +N+    + +   +  
Sbjct: 272 LPELPQ------SLTFLDVSENIFS----GLSELPPNLYYLNASSNEIRS-LCDLPPS-- 318

Query: 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI 414
            L  L +S+N +  ++P     L  L   I   NHL   +P     L     L +E N +
Sbjct: 319 -LEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNL---KQLHVEYNPL 369

Query: 415 SGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLS 474
               P    S    +++    ++    ++     L  L +  N      P+  + +  L 
Sbjct: 370 R-EFPDIPESVEDLRMNSHLAEVPELPQN-----LKQLHVETNPLR-EFPDIPESVEDLR 422

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
              + +  +            +L+     H++  
Sbjct: 423 ---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (290), Expect = 2e-27
 Identities = 98/562 (17%), Positives = 164/562 (29%), Gaps = 119/562 (21%)

Query: 79  CELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138
                LQE     +N+   +P    N+ S      A ++   N           +   R+
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRL 65

Query: 139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK-FQLQNISLSGCRCDFTF 197
            +                +  +       L       SL      L+++  S        
Sbjct: 66  RDC------------LDRQAHELELNNLGL------SSLPELPPHLESLVASCNSLT-EL 106

Query: 198 PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT 257
           P        L   + +   L    P         LE L ++NN L       +     L 
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEKLP--ELQNSSFLK 156

Query: 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
            IDV  N +       +    P LE      N L       L        L  +   NNS
Sbjct: 157 IIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLE-----ELPELQNLPFLTAIYADNNS 206

Query: 318 LQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNL 377
           L+  +        +L ++    N         L N   L  +Y  +N +   +P    +L
Sbjct: 207 LK-KLPD---LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL 259

Query: 378 SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKI 437
             L    + +N+L   +P     L FL V +   + +S   P+      L  ++ S N+I
Sbjct: 260 EALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN------LYYLNASSNEI 309

Query: 438 EGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497
              L D+    L  L++S N+    +P    +L  L   I + N+L  EVP     LKQL
Sbjct: 310 R-SLCDLPPS-LEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLKQL 362

Query: 498 QLIDLSHNNLSGTIPSCLYK-TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR 556
               + +N L    P        L   ++ +  P    N                     
Sbjct: 363 ---HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQN--------------------- 397

Query: 557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMG 616
                               LK    L +  N L  E P     +     L ++   ++ 
Sbjct: 398 --------------------LKQ---LHVETNPLR-EFPDIPESV---EDLRMNSERVVD 430

Query: 617 TIPSTFSHLSQIESLDLSYNML 638
                     ++E     ++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 31/184 (16%)

Query: 347 PENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-------- 398
           P N+ N  L        ++++ ++P    N+ +  +     +  E   P           
Sbjct: 5   PRNVSNTFLQE-PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 399 -----CKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVT 451
                C       L+L    +S SLP       L  +  S N +  +L ++   +  L+ 
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 452 LDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTI 511
            + +    S   P        L YL ++NN LE ++P +L     L++ID+ +N+L   +
Sbjct: 119 DNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KL 168

Query: 512 PSCL 515
           P   
Sbjct: 169 PDLP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           +D+  N L  ++P     L     +   +N L         +L  + ++    N L+ K+
Sbjct: 158 IDVDNNSLK-KLPDLPPSL---EFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KL 210

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P   + L ++      +N L 
Sbjct: 211 PDLPLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L+   L+  +P    +L    +L  S N+L   +P     L  +   + +   L   +
Sbjct: 76  LELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-L 129

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P  L  L       V++N L 
Sbjct: 130 PPLLEYLG------VSNNQLE 144

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 9e-27
 Identities = 58/344 (16%), Positives = 102/344 (29%), Gaps = 48/344 (13%)

Query: 183 LQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSL 242
            +N+   G      +   L    + +     + +       W   N+   +       +L
Sbjct: 14  RENLYFQGSTALRPYHDVL---SQWQ--RHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 243 SGFFQMPVN-PLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHM 301
                +  +        +++    +    P      L  L+H  I    L   +P ++  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ- 124

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGG-- 358
                 L+ L L+ N L+      S  +L  L  L + A      +PE L +    G   
Sbjct: 125 --QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 359 -------LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEV 411
                  L L    I   +P  + NL NL  + + N+ L   +   +  L  L  LDL  
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238

Query: 412 NNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLS 471
                + P  F                G         L  L L        +P  I +L+
Sbjct: 239 CTALRNYPPIF----------------GGRAP-----LKRLILKDCSNLLTLPLDIHRLT 277

Query: 472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
            L  L L        +P  +  L    +I +   +L   +    
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 53/384 (13%), Positives = 104/384 (27%), Gaps = 90/384 (23%)

Query: 16  NLETL------ELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
             E L       LR YH  L  +        +            A   + +  +     L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
             T+D            L +    +    P     ++ L+ + I +  +   +  + ++ 
Sbjct: 69  KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQ 125

Query: 130 LTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL 188
              LE L ++ N  + +P S                                  L     
Sbjct: 126 FAGLETLTLARNPLRALPASIA-------------------------------SLNR--- 151

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQM 248
                             LR + +       E P  L   +   E               
Sbjct: 152 ------------------LRELSIRACPELTELPEPLASTDASGE--------------- 178

Query: 249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL 308
               L  L ++ +    I+  +P  I   L  L+   I  + L+ ++  ++H       L
Sbjct: 179 -HQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIH---HLPKL 231

Query: 309 QILALSNNSLQGHIFSRSFNLTNLVTLQL-DANQFTGGIPENLLNCSLLGGLYLSDNHIS 367
           + L L   +   +          L  L L D +     +P ++   + L  L L      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL 290

Query: 368 GKIPKWLGNLSNLVDIIMPNNHLE 391
            ++P  +  L     I++P +   
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 13/182 (7%)

Query: 344 GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF 403
           G    +  + S    LY   +         L       +      H            N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 404 LTVLDLEVNNISGSLPSCF---SSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNR 458
             +       +  +        +      + L    +  Q  D    +  L  + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKT 518
               +P+ + + + L  L LA N L   +P  +  L +L+ + +        +P  L  T
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 519 AL 520
             
Sbjct: 174 DA 175

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 43/319 (13%), Positives = 89/319 (27%), Gaps = 101/319 (31%)

Query: 15  PNLETLELRDYHLELL-----NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
           P    LELR   L          ++L+ + +D + L      ++     ++ L++    L
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 70  YGTSDFQGLCELVHLQELHIGYNN--------IG-GTLPWCLVNMTSLRILDIASNQITG 120
              +    +  L  L+EL I            +           + +L+ L +    I  
Sbjct: 140 --RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR- 196

Query: 121 NISSSPLRYLTSLEELRVSNNQF-QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP 179
           ++ +S +  L +L+ L++ N+    +  +                               
Sbjct: 197 SLPAS-IANLQNLKSLKIRNSPLSALGPAIH----------------------------- 226

Query: 180 KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
              L                       L  +DL        +P         L+ L+L +
Sbjct: 227 --HLPK---------------------LEELDLRGCTALRNYPPI-FGGRAPLKRLILKD 262

Query: 240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
            S              L T           +P  I   L +LE  ++   V    +P  +
Sbjct: 263 CS-------------NLLT-----------LPLDIHR-LTQLEKLDLRGCVNLSRLPSLI 297

Query: 300 HMTMGCFSLQILALSNNSL 318
                  +  I+ +  +  
Sbjct: 298 AQ---LPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L    L  + P Q   L+ ++ + +    LM  +P T    + +E+L L+ N L+  +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTE 678
           P  +  L  L   S+       ++P+ +       E
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS-YNMLQGK 641
           L +  + L+  +   I +L  +  L+L     +   P  F   + ++ L L   + L   
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-T 268

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           +P  +  L  L    +       ++P  + Q
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 583 LDLS-CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LDL  C  L    P   G    ++ L L   + + T+P     L+Q+E LDL   +   +
Sbjct: 234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDR 669
           +P+ + +L A  I  V   +L  ++   
Sbjct: 293 LPSLIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF---------SHLSQIESLDL 633
           L L+ N L   +P  I  LN +R L++     +  +P              L  ++SL L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 634 SYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
            +  ++  +P  +  L  L    + ++ LS  +   +  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 583 LDLS-CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L L  C+ L   +P  I  L  +  L+L     +  +PS  + L     + +  ++    
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 642 IPTQLVEL 649
              + V  
Sbjct: 317 DQHRPVAR 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (270), Expect = 1e-25
 Identities = 73/333 (21%), Positives = 125/333 (37%), Gaps = 46/333 (13%)

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQM 248
             C+C             LR V  S + L  + P  L  +      L L NN ++     
Sbjct: 27  FRCQCH------------LRVVQCSDLGLE-KVPKDLPPD---TALLDLQNNKITEIKDG 70

Query: 249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF-S 307
               LK L T+ +  N I   I  G  A L +LE   +S+N L   +P           +
Sbjct: 71  DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELP------EKMPKT 122

Query: 308 LQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFT-GGIPENLL-NCSLLGGLYLSDN 364
           LQ L +  N +   +    F  L  ++ ++L  N     GI          L  + ++D 
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFS 423
           +I+  IP+  G   +L ++ +  N +   + A  L  LN L  L L  N+IS       +
Sbjct: 182 NIT-TIPQ--GLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 424 SWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSG------RIPNWIDKLSHLS 474
           +   L ++HL+ NK+  ++     D   +  + L  N  S         P +  K +  S
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 475 YLILANNNLEGEV--PVQLCLLKQLQLIDLSHN 505
            + L +N ++     P     +     + L + 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 5e-24
 Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 21/260 (8%)

Query: 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS 314
            L  +  S   ++  +P  +    P     ++  N +               +L  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 315 NNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPK- 372
           NN +   I   +F  L  L  L L  NQ    +PE +     L  L + +N I+ K+ K 
Sbjct: 85  NNKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKS 139

Query: 373 WLGNLSNLVDIIMPNNHL-EGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
               L+ ++ + +  N L    I       +  L+ + +   NI+        S  LT++
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--LTEL 197

Query: 431 HLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488
           HL  NKI          +  L  L LS+N  S      +    HL  L L NN L  +VP
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 489 VQLCLLKQLQLIDLSHNNLS 508
             L   K +Q++ L +NN+S
Sbjct: 257 GGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 50/292 (17%), Positives = 106/292 (36%), Gaps = 29/292 (9%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIA--VLTSVKHLSMR 65
            P+   L+L++  +  +      N  NL  LIL  +   I  +   A   L  ++ L + 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERLYLS 108

Query: 66  NCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQIT-GNISS 124
              L      + +     LQEL +  N I          +  + ++++ +N +    I +
Sbjct: 109 KNQL--KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
              + +  L  +R+++      I+  P      L + +   N++  ++++ SL     L 
Sbjct: 165 GAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLA 219

Query: 185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS- 243
            + LS           L     LR + L++  L  + P   L ++K ++ + L NN++S 
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISA 277

Query: 244 ---GFFQMPVNP--LKQLTTIDVSKNFIQGH-IPTGIGAFLPRLEHFNISRN 289
                F  P         + + +  N +Q   I       +       +   
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 45/241 (18%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKH 61
            ++ + +S++     +  +EL    L+    + +E     G             +  + +
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQG-------------MKKLSY 175

Query: 62  LSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGN 121
           + + +  +  T+  QGL     L ELH+  N I       L  + +L  L ++ N I+  
Sbjct: 176 IRIADTNI--TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-A 230

Query: 122 ISSSPLRYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
           + +  L     L EL ++NN+   +P       +H  ++  Y   N              
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNN-------------- 273

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR-GEFPNWLLENNKELETLLLAN 239
             +  I  +    DF  P +   +     V L    ++  E              + L N
Sbjct: 274 -NISAIGSN----DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 240 N 240
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L L  NK+T ++       LN +  L LS N++      + ++   +  L L+ N L  K
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
           +P  L +   + +  + +NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ--- 639
           LDL  NK+T         L  +  L L +N +    P  F+ L ++E L LS N L+   
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116

Query: 640 GKIPTQLVELYALAIFSVAHNNLS 663
            K+P  L EL       V  N ++
Sbjct: 117 EKMPKTLQELR------VHENEIT 134

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (262), Expect = 6e-24
 Identities = 78/428 (18%), Positives = 142/428 (33%), Gaps = 51/428 (11%)

Query: 34  NLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN 93
           N    +     +      S   L ++  L   N  +   +D  G+ +L  L +L    NN
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNN 75

Query: 94  IGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFF 153
           I  TL   L   T+L  L   SN++T    +  +  LT L  L    N+    ++     
Sbjct: 76  I-TTLD--LSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNK----LTKLDVS 124

Query: 154 NHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLS 213
            +  L      +N     +    ++   QL  +     +        +  Q +L  +D S
Sbjct: 125 QNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNK--KITKLDVTPQTQLTTLDCS 178

Query: 214 HMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTG 273
              +  E     +  NK L  L    N+++   ++ +N   QLT +D S N +   I   
Sbjct: 179 FNKIT-ELD---VSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EIDVT 230

Query: 274 IGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV 333
               L +L +F+ S N L   +  S         L  L      L         +LT+  
Sbjct: 231 P---LTQLTYFDCSVNPLT-ELDVS-----TLSKLTTLHCIQTDLL------EIDLTHNT 275

Query: 334 TLQ-LDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG 392
            L    A         ++ + + L  L      I+ ++   L     LV + + N  L  
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE 332

Query: 393 PIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTL 452
            +   +     L  L     +I     S      L     +  +     ++   +  +T+
Sbjct: 333 -LD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 453 DLSYNRFS 460
            +S +   
Sbjct: 389 AVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 7e-23
 Identities = 67/438 (15%), Positives = 131/438 (29%), Gaps = 72/438 (16%)

Query: 84  LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
                     +  T       + +L  LD  ++ IT     + +  LT L +L  ++N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 144 QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYY 203
              I+      ++ L       N               +L N+ ++              
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSN---------------KLTNLDVTPLT----------- 106

Query: 204 QHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSK 263
             +L Y++     L  +     +  N  L  L  A N+L+   ++ V+   QLT +D   
Sbjct: 107 --KLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHL 157

Query: 264 NFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIF 323
           N     I         +L   + S N +   +  S         L  L    N++     
Sbjct: 158 NKK---ITKLDVTPQTQLTTLDCSFNKIT-ELDVS-----QNKLLNRLNCDTNNITKLDL 208

Query: 324 SRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDI 383
           +       L  L   +N+ T     ++   + L     S N ++ ++   +  LS L  +
Sbjct: 209 N---QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTL 259

Query: 384 IMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSW-LLTQVHLSRNKIEGQLE 442
                 L      +L     L     E       L    +    L  +      I  +L+
Sbjct: 260 HCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD 313

Query: 443 DVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDL 502
                 LV L L+    +  +   +   + L  L   N +++ +    +  +  L     
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFE 368

Query: 503 SHNNLSGTIPSCLYKTAL 520
           +           L   +L
Sbjct: 369 AEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 67/420 (15%), Positives = 134/420 (31%), Gaps = 78/420 (18%)

Query: 14  FPNLETLELRDYHL----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
              L +L+  +  +     +   T L  LI   + +       ++  T++ +L+  +  L
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKL 97

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
                   +  L  L  L+   N +   L   +     L  L+ A N +T       + +
Sbjct: 98  TNLD----VTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT----EIDVSH 146

Query: 130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS 189
            T L EL    N+    I+       ++L       N               ++  + +S
Sbjct: 147 NTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFN---------------KITELDVS 188

Query: 190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMP 249
             +              L  ++    N+  +     L  N +L  L  ++N L+      
Sbjct: 189 QNK-------------LLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEI---D 228

Query: 250 VNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ 309
           V PL QLT  D S N +   +       L +L   +  +  L   I  +         L 
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVST---LSKLTTLHCIQTDLL-EIDLT-----HNTQLI 278

Query: 310 ILALS-NNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISG 368
                    ++    +   + T L  L   A   T     +L     L  LYL++  ++ 
Sbjct: 279 YFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT- 331

Query: 369 KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT 428
           ++   + + + L  +   N H++     ++ K+  L                  ++  LT
Sbjct: 332 ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 66/453 (14%), Positives = 129/453 (28%), Gaps = 72/453 (15%)

Query: 14  FPNLETLELRDYHLELLNF---TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLY 70
              L  L     ++  L+    TNL  L  D + L       +  LT + +L+     L 
Sbjct: 63  LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT 119

Query: 71  GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYL 130
                  + +   L  L+   N +   +   + + T L  LD   N+    I+   +   
Sbjct: 120 KLD----VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTPQ 169

Query: 131 TSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSG 190
           T L  L  S N+    I+      +  L +     N                +  + L+ 
Sbjct: 170 TQLTTLDCSFNK----ITELDVSQNKLLNRLNCDTN---------------NITKLDLNQ 210

Query: 191 CRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPV 250
                          +L ++D S   L  E     +    +L     + N L+      V
Sbjct: 211 NI-------------QLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTEL---DV 250

Query: 251 NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQI 310
           + L +LTT+   +  +   I         +L +F          +  +         L +
Sbjct: 251 STLSKLTTLHCIQTDLL-EIDLT---HNTQLIYFQAEGCRKIKELDVT-----HNTQLYL 301

Query: 311 LALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI 370
           L      +     S       LV L L+  + T  +   + + + L  L   + HI    
Sbjct: 302 LDCQAAGITELDLS---QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ-DF 354

Query: 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
              +G +  L +               L   +    +  ++ +  G+  +          
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

Query: 431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI 463
             +       L      +  T         G +
Sbjct: 414 QATNTITWENLSTDNPAVTYTFTSENGAIVGTV 446

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 46/347 (13%), Positives = 97/347 (27%), Gaps = 55/347 (15%)

Query: 12  TPFPNLETLELRD---YHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
           TP   L  L         L++     L  L    + L       ++  T +  L      
Sbjct: 103 TPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNK 159

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
                    +     L  L   +N I   L   +     L  L+  +N IT       L 
Sbjct: 160 K---ITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT----KLDLN 209

Query: 129 YLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL 188
               L  L  S+N+    ++       ++L  F    N L  E++  +L+   +L  +  
Sbjct: 210 QNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPL-TELDVSTLS---KLTTLHC 261

Query: 189 SGCR-CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQ 247
                 +           +L Y          E     + +N +L  L      ++   +
Sbjct: 262 IQTDLLEIDLTHNT----QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---E 311

Query: 248 MPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFS 307
           + ++   +L  + ++   +   +         +L+  +     +         +     +
Sbjct: 312 LDLSQNPKLVYLYLNNTELT-ELDVS---HNTKLKSLSCVNAHIQ-DFSSVGKIP----A 362

Query: 308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCS 354
           L     +                 +    L  N  T  +  +LL+  
Sbjct: 363 LNNNFEAEG-----------QTITMPKETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 32/181 (17%), Positives = 70/181 (38%), Gaps = 16/181 (8%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           N  + V    +          +    + L  L   ++ I+      +  L+ L  +I  +
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD 447
           N++      +L +   LT L  + N ++ +L     +  LT ++   NK+  +L+     
Sbjct: 74  NNITTL---DLSQNTNLTYLACDSNKLT-NLDVTPLT-KLTYLNCDTNKLT-KLDVSQNP 127

Query: 448 ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
           +L  L+ + N  +  I   +   + L+ L    N    ++   +    QL  +D S N +
Sbjct: 128 LLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 508 S 508
           +
Sbjct: 183 T 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 58/358 (16%), Positives = 117/358 (32%), Gaps = 50/358 (13%)

Query: 104 NMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
           N    +I  +  + +     +S  +   +++EL +S N     IS       +KL+    
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNL 65

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
             N L      +       L                       LR +DL++  ++     
Sbjct: 66  SSNVL------YETLDLESLST---------------------LRTLDLNNNYVQ----- 93

Query: 224 WLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH 283
             L     +ETL  ANN++S       +  +    I ++ N I   +         R+++
Sbjct: 94  -ELLVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQY 148

Query: 284 FNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT 343
            ++  N ++ ++  +  +     +L+ L L  N +             L TL L +N+  
Sbjct: 149 LDLKLNEID-TVNFA-ELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA 204

Query: 344 GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE-GPIPANLCKLN 402
             +     + + +  + L +N +   I K L    NL    +  N    G +     K  
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFS 460
            +  +  +             + + T  H      E  L   F D L  + L ++   
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCED-LPAPFADRL--IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           N       ++  +     +     +   +  L LS N +S      L   + L  + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD 447
           N L   +   L  L+ L  LDL  N +   L    S   +  +H + N I  ++    G 
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS---IETLHAANNNIS-RVSCSRGQ 120

Query: 448 ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG-EVPVQLCLLKQLQLIDLSHNN 506
               + L+ N+ +          S + YL L  N ++             L+ ++L +N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 507 LSGTIPSCLYKTAL 520
           +   +   +    L
Sbjct: 181 IY-DVKGQVVFAKL 193

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 6e-20
 Identities = 53/354 (14%), Positives = 102/354 (28%), Gaps = 77/354 (21%)

Query: 56  LTSVKHLSMRNCYLYG--TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDI 113
               K   + +  L     S  Q      +++EL +  N +       L   T L +L++
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSA---WNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 114 ASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIE 173
           +SN +     +  L  L++L  L ++NN  Q                             
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQ----------------------------- 93

Query: 174 SHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELE 233
              L     ++ +  +                 +  V  S                +  +
Sbjct: 94  --ELLVGPSIETLHAANNN--------------ISRVSCSRG--------------QGKK 123

Query: 234 TLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG 293
            + LANN ++    +      ++  +D+  N I       + A    LEH N+  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLN 352
            +   +        L+ L LS+N L        F +   +  + L  N+    I + L  
Sbjct: 183 DVKGQVVFA----KLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 353 CSLLGGLYLSDNHIS-GKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
              L    L  N    G +  +      +  +               C +  L 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 25/245 (10%)

Query: 4   SSLLQSLWTPFPNLETLELRDYHL----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSV 59
           S +  +   PF  LE L L    L    +L + + L  L L+ + +     Q + V  S+
Sbjct: 47  SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSI 101

Query: 60  KHLSMRNCYLYG--TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQ 117
           + L   N  +     S  QG       + +++  N I           + ++ LD+  N+
Sbjct: 102 ETLHAANNNISRVSCSRGQGK------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 118 ITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL-FVEIESHS 176
           I     +       +LE L +  N        +     +KLK      N+L F+  E  S
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212

Query: 177 LTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
                 +  ISL   +      + L +   L + DL                N+ ++T+ 
Sbjct: 213 AA---GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 237 LANNS 241
                
Sbjct: 269 KQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
             ++ + L   +         ++ L+LS N L     +  +  +++E L+LS N+L    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 643 PTQLVELYALAIFSVAHNNLS 663
              L  L  L    + +N + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDLS NKL   +  +      +  ++L +N L+  I         +E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGN 684
                      + +VA   +  K+  +  +  T     + G 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 583 LDLSCNKLTG-EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           LDL  N++            + +  LNL +N +   +       +++++LDLS N L   
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-F 205

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP 691
           +  +      +   S+ +N L   +   +            GN   CG  
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 441 LEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQ 498
           + ++  +        ++ +     + +      ++  L L+ N L       L    +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 499 LIDLSHNNLS 508
           L++LS N L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG-K 641
           L  + N ++  +          + + L++N +           S+++ LDL  N +    
Sbjct: 104 LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 642 IPTQLVELYALAIFSVAHNNLS 663
                     L   ++ +N + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN 660
            N  +   ++ ++L   + S       ++ LDLS N L       L     L + +++ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 661 NLS 663
            L 
Sbjct: 69  VLY 71

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (254), Expect = 1e-23
 Identities = 60/207 (28%), Positives = 82/207 (39%), Gaps = 13/207 (6%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
            L  L L NN +   I  ++F  L  L  L +  N     IP NL   S L  L + DN 
Sbjct: 79  HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNR 134

Query: 366 ISGKIPK-WLGNLSNLVDIIMPNNHL-EGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS 423
           I  K+PK     L N+  I M  N L              L  L +    ++G       
Sbjct: 135 IR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193

Query: 424 SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN 481
           +  L ++HL  NKI+    +       L  L L +N+        +  L  L  L L NN
Sbjct: 194 T--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 482 NLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            L   VP  L  LK LQ++ L  NN++
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 3e-23
 Identities = 68/333 (20%), Positives = 122/333 (36%), Gaps = 47/333 (14%)

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQM 248
            GC C             LR V  S + L+   P  +  +      L L NN +S   + 
Sbjct: 29  FGCHCH------------LRVVQCSDLGLK-AVPKEISPD---TTLLDLQNNDISELRKD 72

Query: 249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF-S 307
               L+ L  + +  N I   I     + L +L+   IS+N L   IP +L        S
Sbjct: 73  DFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL------PSS 124

Query: 308 LQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFT-GGIPENLLNCSLLGGLYLSDNH 365
           L  L + +N ++  +    F  L N+  +++  N     G      +   L  L +S+  
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSS 424
           ++  IPK       L ++ + +N ++  I    L + + L  L L  N I        S 
Sbjct: 184 LT-GIPK--DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 425 WL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPN-------WIDKLSHLS 474
              L ++HL  NK+  ++     D+  L  + L  N  + ++         +  K ++ +
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 475 YLILANNNLEGEV--PVQLCLLKQLQLIDLSHN 505
            + L NN +      P     +     I   + 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 12/184 (6%)

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
            +   L L  N  +    ++      L  L L +N IS    K    L  L  + +  NH
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQL--EDVFG 446
           L   IP NL   + L  L +  N I       FS    +  + +  N +E        F 
Sbjct: 114 LVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 447 DI-LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ-LCLLKQLQLIDLSH 504
            + L  L +S  + +  IP   D    L+ L L +N ++  + ++ L    +L  + L H
Sbjct: 171 GLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 505 NNLS 508
           N + 
Sbjct: 227 NQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 19/185 (10%)

Query: 331 NLVTLQLDANQFT---GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
           +L  +Q            I  +         L L +N IS         L +L  +++ N
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTL------LDLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 388 NHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG 446
           N +   I       L  L  L +  N++    P+  SS  L ++ +  N+I    + VF 
Sbjct: 88  NKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKVPKGVFS 144

Query: 447 DI--LVTLDLSYNRF-SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
            +  +  +++  N   +            L+YL ++   L   +P    L + L  + L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLD 201

Query: 504 HNNLS 508
           HN + 
Sbjct: 202 HNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 45/292 (15%), Positives = 89/292 (30%), Gaps = 30/292 (10%)

Query: 14  FPNLETLELRDYHLE------LLNFTNLEVLILDGSALHIRFLQSIA--VLTSVKHLSMR 65
            P+   L+L++  +            +L  L+L  +   I  +   A   L  ++ L + 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--KISKIHEKAFSPLRKLQKLYIS 110

Query: 66  NCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQIT-GNISS 124
             +L              L EL I  N I          + ++  +++  N +       
Sbjct: 111 KNHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
                L  L  LR+S  +    ++  P      L + +   N++   IE   L    +L 
Sbjct: 167 GAFDGL-KLNYLRISEAK----LTGIPKDLPETLNELHLDHNKI-QAIELEDLLRYSKLY 220

Query: 185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS- 243
            + L   +        L +   LR + L +  L    P   L + K L+ + L  N+++ 
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITK 278

Query: 244 ---GFFQ--MPVNPLKQLTTIDVSKNFIQ-GHIPTGIGAFLPRLEHFNISRN 289
                F              I +  N +    +       +           
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 27/201 (13%), Positives = 68/201 (33%), Gaps = 19/201 (9%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELLN-----FTNLEVLILDGSALHIRFLQSIAVL 56
            +  + + +++   N+  +E+    LE        F  L++  L  S   +  +    + 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLP 192

Query: 57  TSVKHLSMRNCYLY--GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIA 114
            ++  L + +  +      D         L  L +G+N I       L  + +LR L + 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRY---SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 115 SNQITGNISSSPLRYLTSLEELRVSNNQFQ-IPI----SFEPFFNHSKLKKFYGQKNRL- 168
           +N+++  + +  L  L  L+ + +  N    + +            +         N + 
Sbjct: 250 NNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 169 FVEIESHSLTPKFQLQNISLS 189
           + E++  +         I   
Sbjct: 308 YWEVQPATFRCVTDRLAIQFG 328

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 76/447 (17%), Positives = 150/447 (33%), Gaps = 105/447 (23%)

Query: 82  VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
            H+  + +  N+I          +  L+ L +        I ++  R L+SL  L++  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 142 QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFL 201
           QF                           ++E+ +      L+ ++L+ C          
Sbjct: 90  QFL--------------------------QLETGAFNGLANLEVLTLTQCN--------- 114

Query: 202 YYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS-----GFFQMPVNPLKQL 256
                L    L              +    LE L+L +N++       FF      +++ 
Sbjct: 115 -----LDGAVL---------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFL----NMRRF 156

Query: 257 TTIDVSKNFIQGHIPTGIGAFLP--RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS 314
             +D++ N ++  I                 +S                      +  ++
Sbjct: 157 HVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSI-------------------TLQDMN 196

Query: 315 NNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPE---NLLNCSLLGGLYLSDNHISGKIP 371
              L        F  T++ TL L  N F   + +   + +  + +  L LS+++  G   
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-S 255

Query: 372 KWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQ 429
               N  +       N   +G   +       +   DL  + I  +L     S    L Q
Sbjct: 256 FGHTNFKDP-----DNFTFKGLEASG------VKTCDLSKSKIF-ALLKSVFSHFTDLEQ 303

Query: 430 VHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGE 486
           + L++N+I    ++ F  +  L+ L+LS N     I + + + L  L  L L+ N++   
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-A 361

Query: 487 VPVQLCL-LKQLQLIDLSHNNLSGTIP 512
           +  Q  L L  L+ + L  N L  ++P
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 5e-22
 Identities = 72/429 (16%), Positives = 142/429 (33%), Gaps = 78/429 (18%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
             +  +D++ N I   ++ +    L  L+ L+V      + I    F   S L       
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N+  +++E+ +      L+ ++L+ C               L    L             
Sbjct: 89  NQF-LQLETGAFNGLANLEVLTLTQCN--------------LDGAVL---------SGNF 124

Query: 226 LENNKELETLLLANNSLS-----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLP- 279
            +    LE L+L +N++       FF      +++   +D++ N ++  I          
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFL----NMRRFHVLDLTFNKVK-SICEEDLLNFQG 179

Query: 280 -RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLD 338
                  +S                      +  ++   L        F  T++ TL L 
Sbjct: 180 KHFTLLRLSSI-------------------TLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 339 ANQFTGGIPE---NLLNCSLLGGLYLSDNHISGKIPKW--LGNLSNLVDIIMPNNHLE-- 391
            N F   + +   + +  + +  L LS+++  G         +  N     +  + ++  
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 392 -------GPIPANLCK-LNFLTVLDLEVNNISGSLPS-CFSS-WLLTQVHLSRNKIEGQL 441
                    +  ++      L  L L  N I+  +    F     L +++LS+N +    
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 442 EDVFGDI--LVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCLLKQLQ 498
             +F ++  L  LDLSYN     + +     L +L  L L  N L+         L  LQ
Sbjct: 340 SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398

Query: 499 LIDLSHNNL 507
            I L  N  
Sbjct: 399 KIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.4 bits (240), Expect = 4e-21
 Identities = 68/379 (17%), Positives = 119/379 (31%), Gaps = 50/379 (13%)

Query: 81  LVHLQELHIGYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
           L  LQ L +     G  +       ++SL IL +  NQ    + +     L +LE L ++
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLT 111

Query: 140 NNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKF------QLQNISLSG-- 190
                   +S   F   + L+    + N +        + P        +   + L+   
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNI------KKIQPASFFLNMRRFHVLDLTFNK 165

Query: 191 --CRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL-------LENNKELETLLLANNS 241
               C+     F         + LS + L+     WL          N  + TL L+ N 
Sbjct: 166 VKSICEEDLLNFQGKH--FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHM 301
                          T I      +       +G+        +       G        
Sbjct: 224 FKESMAKRFFDAIAGTKIQ----SLILSNSYNMGSSFGHTNFKDPDNFTFKG-------- 271

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGL 359
            +    ++   LS + +   +    F + T+L  L L  N+    I +N     + L  L
Sbjct: 272 -LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSL 418
            LS N +     +   NL  L  + +  NH+   +       L  L  L L+ N +  S+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SV 386

Query: 419 PSCFSSWL--LTQVHLSRN 435
           P      L  L ++ L  N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 66/364 (18%), Positives = 122/364 (33%), Gaps = 41/364 (11%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDN 364
            +  + LS NS+   +   SF  L +L  L+++       I  N     S L  L L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHL-EGPIPANL-CKLNFLTVLDLEVNNISGSLPSCF 422
                       L+NL  + +   +L    +  N    L  L +L L  NNI    P+ F
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 423 SSWL--LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
              +     + L+ NK++   E+           +  R           LS ++   +  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDL-LNFQGKHFTLLR-----------LSSITLQDMNE 197

Query: 481 NNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASS 540
             L  E          +  +DLS N    ++    +  A+      S   ++  N G+S 
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-DAIAGTKIQSLILSNSYNMGSSF 256

Query: 541 PAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQI-G 599
                    + +    +   V+                     DLS +K+   +   +  
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKT-------------------CDLSKSKIF-ALLKSVFS 296

Query: 600 YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH 659
           +   +  L L+ N +     + F  L+ +  L+LS N L          L  L +  +++
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 660 NNLS 663
           N++ 
Sbjct: 357 NHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 52/331 (15%), Positives = 96/331 (29%), Gaps = 66/331 (19%)

Query: 359 LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC-KLNFLTVLDLEVNNISGS 417
           + LS N I+         L +L  + +        I  N    L+ L +L L+ N     
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 418 LPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI--PNWIDKLSHLSY 475
               F+   L                     L  L L+     G +   N+   L+ L  
Sbjct: 95  ETGAFNG--LAN-------------------LEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 476 LILANNNLEGEVPVQL-CLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG 534
           L+L +NN++   P      +++  ++DL+ N +       L                   
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL----SS 189

Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI 594
                           G+          F+  + +             LDLS N     +
Sbjct: 190 ITLQDMNEYWLGWEKCGNP---------FKNTSITT------------LDLSGNGFKESM 228

Query: 595 PFQI-------------GYLNMIRALNLSHNNLMGTIPSTFSHL--SQIESLDLSYNMLQ 639
             +                 +     +  H N       TF  L  S +++ DLS + + 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288

Query: 640 GKIPTQLVELYALAIFSVAHNNLSGKVPDRV 670
             + +       L   ++A N ++ K+ D  
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 71/402 (17%), Positives = 119/402 (29%), Gaps = 114/402 (28%)

Query: 15  PNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIA--VLTSVKHLSMRN 66
            +L  L+L       L         NLEVL L    L    L       LTS++ L +R+
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 67  C--------------------YLYG-------TSDFQGLC-------ELVHLQELHIGYN 92
                                 L           D             L  +    +   
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 93  NIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPF 152
            +G          TS+  LD++ N    +++      +   +   +  +      S    
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 153 FNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDL 212
            N           N  F  +E+  +                                 DL
Sbjct: 259 TNFKDP------DNFTFKGLEASGVK------------------------------TCDL 282

Query: 213 SHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQLTTIDVSKNFIQG 268
           S   +       +  +  +LE L LA N ++      F      L  L  +++S+NF+  
Sbjct: 283 SKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW----GLTHLLKLNLSQNFLG- 336

Query: 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF----SLQILALSNN---SLQGH 321
            I + +   L +LE  ++S N +  ++          F    +L+ LAL  N   S+   
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI-RALG------DQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 322 IFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD 363
           IF     LT+L  + L  N +         +CS     YLS 
Sbjct: 390 IFD---RLTSLQKIWLHTNPW---------DCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 393 PIPANLCKLNFLTVLDLEVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLE-DVFGDI-- 448
            +PA++        +DL +N+I+    + FS    L  + + +      +  + F  +  
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 449 LVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEV--PVQLCLLKQLQLIDLSHN 505
           L+ L L YN+F  ++     + L++L  L L   NL+G V        L  L+++ L  N
Sbjct: 81  LIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 506 NLSGTIPSCL 515
           N+    P+  
Sbjct: 140 NIKKIQPASF 149

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 25/263 (9%)

Query: 231 ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNV 290
           +   ++     LS   ++P         +++ +N IQ  I       L  LE   + RN 
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 291 LNGSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGG 345
           +   I       +G F    SL  L L +N L   I S +F  L+ L  L L  N     
Sbjct: 111 IR-QIE------VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES- 161

Query: 346 IPENLL-NCSLLGGLYLSD-NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF 403
           IP         L  L L +   +          L NL  + +   +++  +P  L  L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVG 219

Query: 404 LTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS 460
           L  L++  N+     P  F     L ++ +  +++     + F  +  LV L+L++N  S
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 461 GRIPNWIDKLSHLSYLILANNNL 483
               +    L +L  L L +N  
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 7/210 (3%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDN 364
           + + L L  N++Q  I + +F +L +L  LQL  N     I        + L  L L DN
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDN 133

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDL-EVNNISGSLPSCFS 423
            ++         LS L ++ + NN +E        ++  L  LDL E+  +       F 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 424 S-WLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
             + L  ++L    I+          L  L++S N F    P     LS L  L + N+ 
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
           +          L  L  ++L+HNNLS ++P
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS-SLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 11/218 (5%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
             F+ L    HL+ L +G N+I          + SL  L++  N +T  I S    YL+ 
Sbjct: 93  DTFRHL---HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFY-GQKNRLFVEIESHSLTPKFQLQNISLSGC 191
           L EL + NN  +  I    F     L +   G+  +L   I   +    F L+ ++L  C
Sbjct: 149 LRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKL-EYISEGAFEGLFNLKYLNLGMC 206

Query: 192 RCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVN 251
                    L     L  +++S  +   E           L+ L + N+ +S   +   +
Sbjct: 207 N--IKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 252 PLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
            L  L  ++++ N +   +P  +   L  L   ++  N
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 53/263 (20%), Positives = 93/263 (35%), Gaps = 39/263 (14%)

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
           + + L++  NNI         ++  L +L +  N I   I       L SL  L + +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 143 FQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202
             + I    F   SKL++ + + N +   I S++      + +                 
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNR---VPS----------------- 172

Query: 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVS 262
               L  +DL  +           E    L+ L L   ++       + PL  L  +++S
Sbjct: 173 ----LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMS 226

Query: 263 KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN---SLQ 319
            N     I  G    L  L+   +  + ++     +     G  SL  L L++N   SL 
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD---GLASLVELNLAHNNLSSLP 282

Query: 320 GHIFSRSFNLTNLVTLQLDANQF 342
             +F+    L  LV L L  N +
Sbjct: 283 HDLFT---PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 12  TPFPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV--LTSVKHLS 63
                L  L LR+  +E +         +L  L L      + ++   A   L ++K+L+
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLN 202

Query: 64  MRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNIS 123
           +  C +    +   L   V L+EL +  N+     P     ++SL+ L + ++Q++  I 
Sbjct: 203 LGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 124 SSPLRYLTSLEELRVSNNQFQ 144
            +    L SL EL +++N   
Sbjct: 259 RNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDY-HLELL------NFTNLEVLILDGSALHIRFLQSIA 54
            + S+    +   P+L  L+L +   LE +         NL+ L L     +I+ + ++ 
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--NIKDMPNLT 215

Query: 55  VLTSVKHLSMRNCYLY--GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD 112
            L  ++ L M   +        F GL     L++L +  + +          + SL  L+
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGL---SSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 113 IASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           +A N ++ ++       L  L EL + +N + 
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 30/123 (24%), Positives = 42/123 (34%), Gaps = 5/123 (4%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLEDVFGDI--LV 450
           +P  +   +    L+L  NNI       F     L  + L RN I       F  +  L 
Sbjct: 69  VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126

Query: 451 TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510
           TL+L  N  +       + LS L  L L NN +E         +  L  +DL        
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 511 IPS 513
           I  
Sbjct: 187 ISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNMLQG 640
           L L  N +   IP      +  +  L+L     +  I    F  L  ++ L+L    ++ 
Sbjct: 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209

Query: 641 KIPTQLVELYALAIFSVAHNNLS 663
            +P  L  L  L    ++ N+  
Sbjct: 210 DMPN-LTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L++S N      P     L+ ++ L + ++ +     + F  L+ +  L+L++N L   +
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 643 PTQLVE-LYALAIFSVAHNNL 662
           P  L   L  L    + HN  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 25/253 (9%)

Query: 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFS----LQILALSNNSLQ-GHIF 323
            +PTGI           +  N L  S+P       G F     L  L+LS+N L      
Sbjct: 21  SVPTGI---PSSATRLELESNKLQ-SLP------HGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 324 SRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPK-WLGNLSNLV 381
           S+S    T+L  L L  N     +  N L    L  L    +++          +L NL+
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 382 DIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEG 439
            + + + H           L+ L VL +  N+   +      + L  LT + LS+ ++E 
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 440 QLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQL--CLLK 495
                F  +  L  L++S+N F          L+ L  L  + N++      Q       
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPS 248

Query: 496 QLQLIDLSHNNLS 508
            L  ++L+ N+ +
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 22/246 (8%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQ 164
           +S   L++ SN++  ++       LT L +L +S+N         +  F  + LK     
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 165 KNRLFVEIESHSLTPKF----QLQNISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRG 219
            N +       +++  F    QL+++                     L Y+D+SH + R 
Sbjct: 87  FNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 139

Query: 220 EFPNWLLENNKELETLLLANNSLSGFFQMPV-NPLKQLTTIDVSKNFIQGHIPTGIGAFL 278
              N +      LE L +A NS    F   +   L+ LT +D+S+  ++  +       L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL 198

Query: 279 PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFN--LTNLVTLQ 336
             L+  N+S N    S+    +      SLQ+L  S N +      +      ++L  L 
Sbjct: 199 SSLQVLNMSHNNFF-SLDTFPY--KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLN 254

Query: 337 LDANQF 342
           L  N F
Sbjct: 255 LTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 37/251 (14%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLE--------LLNFTNLEVLILDGSALHIRFLQS- 52
            + SL   ++     L  L L    L             T+L+ L L  +   +  + S 
Sbjct: 39  KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSN 96

Query: 53  IAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD 112
              L  ++HL  ++  L   S+F     L +L  L I + +           ++SL +L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 113 IASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEI 172
           +A N    N        L +L  L +S  Q +  +S   F + S L+      N      
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHN------ 209

Query: 173 ESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL 232
                       ++                  + L+ +D S  ++       L      L
Sbjct: 210 ---------NFFSLD----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 233 ETLLLANNSLS 243
             L L  N  +
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 334 TLQLDANQFT---GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHL 390
            ++ ++   T    GIP +         L L  N +          L+ L  + + +N L
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATR------LELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 391 E--GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEG-QLEDVFG 446
              G    +      L  LDL  N +  ++ S F     L  +    + ++      VF 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN-LEGEVPVQLCLLKQLQLIDLS 503
            +  L+ LD+S+           + LS L  L +A N+  E  +P     L+ L  +DLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 504 HNNLSGTIPS 513
              L   +  
Sbjct: 184 QCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 583 LDLSCNKLT--GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640
           L LS N L+  G           ++ L+LS N +  T+ S F  L Q+E LD  ++ L+ 
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 641 KIPTQL-VELYALAIFSVAHNNLS 663
                + + L  L    ++H +  
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 583 LDLSCNKLTGEIP---FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
           LDLS  +L  ++    F    L+ ++ LN+SHNN        +  L+ ++ LD S N + 
Sbjct: 180 LDLSQCQLE-QLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 640 -------GKIPTQLVELY 650
                     P+ L  L 
Sbjct: 237 TSKKQELQHFPSSLAFLN 254

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.8 bits (233), Expect = 5e-21
 Identities = 63/280 (22%), Positives = 90/280 (32%), Gaps = 26/280 (9%)

Query: 225 LLENNKELETLLL-ANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFL--PRL 281
           L    + LE LL   +          +     L  + V    I   I  G    L    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 282 EHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS----RSFNLTNLVTLQL 337
           +   +    + G+ P  L    G   L IL L N S           + +    L  L +
Sbjct: 98  QELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 338 DANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKW----LGNLSNLVDIIMPNNHLE-- 391
                     E +     L  L LSDN   G+              L  + + N  +E  
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 392 -GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI 448
            G   A       L  LDL  N++  +  +    W   L  ++LS       L+ V   +
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT----GLKQVPKGL 272

Query: 449 ---LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG 485
              L  LDLSYNR   R P+  D+L  +  L L  N    
Sbjct: 273 PAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 51/287 (17%), Positives = 87/287 (30%), Gaps = 21/287 (7%)

Query: 71  GTSDFQGLCELVHLQELHIGYNNIGGTLPWC-LVNMTSLRILDIASNQITGNISSSPLRY 129
           G +D +       L+ L    +       +  ++   SL+ L + + +I   I    LR 
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 130 L--TSLEELRVSNNQFQIPISFEPF-FNHSKLKKFYGQKNRLFVEIESHSLTPKF---QL 183
           L  + L+EL + N +                L     +           +   ++    L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 184 QNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNW---LLENNKELETLLLANN 240
           + +S++           +     L  +DLS     GE              L+ L L N 
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 241 ---SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPC 297
              + SG          QL  +D+S N ++         +  +L   N+S   L      
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 298 SLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG 344
                     L +L LS N L          L  +  L L  N F  
Sbjct: 272 LPA------KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 38/293 (12%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSM 64
           SL   L       +  +  D  ++ L+   L V      +  +     +  ++ ++ L++
Sbjct: 44  SLEYLLKRVDTEADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 65  RNCYLYGTSDFQGL-CELVHLQELHIGYNNIGGTLPWCL----VNMTSLRILDIASNQIT 119
            N  + GT+    L      L  L++   +      W           L++L IA     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 120 GNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP 179
            N S   +R   +L  L +S+N               K                      
Sbjct: 163 -NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-------------------- 201

Query: 180 KFQLQNISLSGCRC---DFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
              LQ ++L                  + +L+ +DLSH +LR        +   +L +L 
Sbjct: 202 --TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 237 LANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
           L+   L    Q+P     +L+ +D+S N +    P      LP++ + ++  N
Sbjct: 260 LSFTGLK---QVPKGLPAKLSVLDLSYNRLD-RNP--SPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 46/248 (18%), Positives = 73/248 (29%), Gaps = 33/248 (13%)

Query: 281 LEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS---RSFNLTNLVTLQL 337
           LE+     +    +        +   SL+ L +    +   I     R   ++ L  L L
Sbjct: 45  LEYLLKRVD--TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 338 DANQFTGGIPENLLNCSLLGGLYLSDNHIS-GKIPKWLGNLSNLVD-----IIMPNNHLE 391
           +  + TG  P  LL  +      L+  ++S      WL  L   +      + +   H  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 392 GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVT 451
                 +     L+ LDL  N   G               L       +        L  
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERG------------LISALCPLKF-----PTLQV 205

Query: 452 LDLSYNRF---SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL-LKQLQLIDLSHNNL 507
           L L        SG           L  L L++N+L        C    QL  ++LS   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 508 SGTIPSCL 515
              +P  L
Sbjct: 266 K-QVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 21/193 (10%)

Query: 349 NLLNCSLLGGLYLSDNHISGKIPKW---LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
           +++    L  L +    I  +I      +  +S L ++ + N  + G  P  L +     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 406 VLDLEVNNISGSLPSCFSSWL-------LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSY 456
           +  L + N+S +    + + L       L  + +++        +       L TLDLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 457 NRFSGRIPNWI----DKLSHLSYLILANNNLE---GEVPVQLCLLKQLQLIDLSHNNLSG 509
           N   G           K   L  L L N  +E   G          QLQ +DLSHN+L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 510 TIP--SCLYKTAL 520
                SC + + L
Sbjct: 243 AAGAPSCDWPSQL 255

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 50/285 (17%), Positives = 73/285 (25%), Gaps = 46/285 (16%)

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDIL 449
              P P      N L   D+E+     SL                  I   L       L
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS------L 70

Query: 450 VTLDLSYNRFSGRIPNWIDKL---SHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506
             L +   R   RI     ++   S L  L L N  + G  P  L       L  L+  N
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 507 LSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK 566
           +S                                                K  S+     
Sbjct: 131 VSWATRDAWLAE-----------------------------LQQWLKPGLKVLSIAQAHS 161

Query: 567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQI----GYLNMIRALNLSHNN---LMGTIP 619
                 Q R+   +  LDLS N   GE              ++ L L +       G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 620 STFSHLSQIESLDLSYNMLQGKIPTQL-VELYALAIFSVAHNNLS 663
           +  +   Q++ LDLS+N L+             L   +++   L 
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 52/313 (16%), Positives = 88/313 (28%), Gaps = 62/313 (19%)

Query: 373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL----LT 428
           + G  S    +   +   +     ++ K   L  L +    I   +       L    L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 429 QVHLSRNKIEGQLEDVFGDI----LVTLDLSYNRFSGRIPNWIDKLS-----HLSYLILA 479
           ++ L   ++ G       +     L  L+L    ++     W+ +L       L  L +A
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIA 157

Query: 480 NNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGAS 539
             +       Q+ +   L  +DLS                               N    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSD------------------------------NPELG 187

Query: 540 SPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFG-------LDLSCNKLTG 592
                 A+ P    T++         +N        +   +         LDLS N L  
Sbjct: 188 ERGLISALCPLKFPTLQ-----VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 593 EIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYA 651
                   + + + +LNLS   L        + L     LDLSYN L    P    EL  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQ 297

Query: 652 LAIFSVAHNNLSG 664
           +   S+  N    
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 16/157 (10%)

Query: 4   SSLLQSLWTPFPNLETLELRDYHLELLNF----------TNLEVLILDGSALHIRFLQSI 53
           ++    L    P+L  L LR+      +             L+VL +  +       + +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 54  AVLTSVKHLSMRNCYLYGTSDF------QGLCELVHLQELHIGYNNIGGTLPWCLVNMTS 107
            V  ++  L + +    G               L  L   + G     G           
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 108 LRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           L+ LD++ N +     +    + + L  L +S    +
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 19/158 (12%)

Query: 2   NVSSLLQSLWTPFPNLETLELRD----------YHLELLNFTNLEVLILDG---SALHIR 48
           +  +        FP L TL+L D            L  L F  L+VL L           
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 49  FLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL 108
                A    ++ L + +  L   +          L  L++ +  +   +P  L     L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKL 276

Query: 109 RILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
            +LD++ N++     +     L  +  L +  N F   
Sbjct: 277 SVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 9e-21
 Identities = 86/459 (18%), Positives = 147/459 (32%), Gaps = 73/459 (15%)

Query: 79  CELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV 138
           C       L++G + +  TLP CL     +  L I  N +T ++ +        L  L V
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 139 SNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTF 197
           S NQ   +P+         +L  F      L              L  + + G +   + 
Sbjct: 89  SGNQLTSLPVLPP---GLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQLT-SL 136

Query: 198 PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT 257
           P        L+ + +S   L    P        EL  L   NN L+    +P+     L 
Sbjct: 137 PVLP---PGLQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPML-PSGLQ 184

Query: 258 TIDVSKNFIQGHIPTGIG----------------AFLPRLEHFNISRNVLNGSIPCSLHM 301
            + VS N +   +PT                   A    L+   +S N L  S+P     
Sbjct: 185 ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS- 241

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYL 361
                 L+ L +S N L     S     + L++L +  NQ T  +PE+L++ S    + L
Sbjct: 242 -----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNL 291

Query: 362 SDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSC 421
             N +S +  + L  +++      P                  T                
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIR----FDMAGASAPRETRALHLAAADWLVPARE 347

Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFGDILVTLD--LSYNRFSGRIPNWIDKLSHLSYL--- 476
                  + H+   +       +F D L   +  +    F  +I +W+ +L+    L   
Sbjct: 348 GEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRAN 407

Query: 477 --ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
              +A              L Q++ + L HN   G   +
Sbjct: 408 TFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDN 446

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 57/353 (16%), Positives = 104/353 (29%), Gaps = 75/353 (21%)

Query: 7   LQSLWTPFPNLETLELRDYHL-----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKH 61
           L SL    P L TLE+    L            L +     + L        A+ + +  
Sbjct: 73  LTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL-------PALPSGLCK 125

Query: 62  LSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGN 121
           L +    L              LQEL +  N +  +LP     +  L   +   NQ+T +
Sbjct: 126 LWIFGNQLTSLPV-----LPPGLQELSVSDNQL-ASLPALPSELCKLWAYN---NQLT-S 175

Query: 122 ISSSPLRYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
           +        + L+EL VS+NQ   +P                                  
Sbjct: 176 LPML----PSGLQELSVSDNQLASLPTLPS------------------------------ 201

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
            +L  +     R   + P        L+ + +S  N     P        EL+ L+++ N
Sbjct: 202 -ELYKLWAYNNRLT-SLPALP---SGLKELIVSG-NRLTSLPVLP----SELKELMVSGN 251

Query: 241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLH 300
            L+    +P+     L ++ V +N +   +P  +   L      N+  N L+        
Sbjct: 252 RLT---SLPML-PSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLS-ERTLQAL 304

Query: 301 MTMGCFSLQILAL-SNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLN 352
             +         +   +         +  L       L   +     P +  +
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L++  + LT  +P  +     I  L +  NNL  ++P+    L    +L++S N L   +
Sbjct: 45  LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SL 96

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P     L  L+IFS    +L 
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L +  N LT  +P     L   R L +S N L  ++P     L ++         L   +
Sbjct: 66  LVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-AL 119

Query: 643 PTQLVELYALAIFSVAHNNLS 663
           P+ L +L+      +  N L+
Sbjct: 120 PSGLCKLW------IFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 45/263 (17%)

Query: 7   LQSLWTPFPNLETLELRDYHLELL--NFTNLEVLILDGSALHIRFLQSI-AVLTSVKHLS 63
           L SL    P L+ L + D  L  L    + L  L    +      L S+  + + ++ LS
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ-----LTSLPMLPSGLQELS 187

Query: 64  MRNCYLYGTSDFQGLCELVHL-----------------QELHIGYNNIGGTLPWCLVNMT 106
           + +  L   S      EL  L                 +EL +  N +  +LP   V  +
Sbjct: 188 VSDNQL--ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLP---VLPS 241

Query: 107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQK 165
            L+ L ++ N++T ++        + L  L V  NQ   +P   E   + S       + 
Sbjct: 242 ELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLTRLP---ESLIHLSSETTVNLEG 293

Query: 166 NRL----FVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEF 221
           N L       +   +  P +    I                +     ++  +        
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 222 PNW-LLENNKELETLLLANNSLS 243
             W +       +   L  + LS
Sbjct: 354 DRWHMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L +S N+LT  +P     L    +L++  N L   +P +  HLS   +++L  N L  + 
Sbjct: 246 LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 643 PTQLVELYALAIFS 656
              L E+ +   +S
Sbjct: 301 LQALREITSAPGYS 314

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 58/459 (12%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
            D   L     L+ L + +N I        +    L  LD++ N++  NIS  P+    S
Sbjct: 70  PDISFL---SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPM---AS 122

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL----FVEIESHSLTPKFQLQNISL 188
           L  L +S N F +    + F N +KL        +      + +    L     L  +S 
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL-SCILLDLVSY 181

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGF--- 245
                +    +       + ++     +L   F   +  +   L  L L+N  L+     
Sbjct: 182 HIKGGETESLQIP--NTTVLHLVFHPNSL---FSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 246 ----FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFL--PRLEHFNISRNVLNGSIPCSL 299
               F   +     L  + +            +  F     +E+ NI    +   I    
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 300 HMTMGCF--SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG 357
                    SL I  + N        +       +    L  +           + S   
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE--GPIPANLCKLNFLTVLDLEVNNIS 415
            L  + N  +  + +    L  L  +I+  N L+    +      ++ L  LD+ +N+++
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 416 GSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHL 473
                   +W   +  ++LS N + G +       +  LDL  NR    IP  +  L  L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQAL 475

Query: 474 SYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
             L                        +++ N L  ++P
Sbjct: 476 QEL------------------------NVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 91/528 (17%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDG---SALHIRFLQSIAVLTS 58
           ++    ++L     ++  L + D        + L VL L      +L             
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNRIRSLDFHVFLF---NQD 101

Query: 59  VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLV--NMTSLRILDIASN 116
           +++L + +  L   S     C +  L+ L + +N+    LP C    N+T L  L +++ 
Sbjct: 102 LEYLDVSHNRLQNISC----CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAA 156

Query: 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPF----FNHSKLKKFYGQKNRLFVEI 172
           +         L  +  L    +  +     I           ++ +       N LF   
Sbjct: 157 KFR----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 173 ESHSLTP--KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL----L 226
            + S+      QL NI L+   C                ++++  ++   +   +     
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 227 ENNKELETLLLANNSLSG-----FFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRL 281
              + +E L + N +++       F      LK L    V            + +    +
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEM 331

Query: 282 EHFNISRNVLNG-SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDAN 340
               +S +      + C    +    S   L  + N     +F     L  L TL L  N
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPS----SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 341 QFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK 400
                                              N   +  +                 
Sbjct: 388 GLK--------------------------------NFFKVALM--------------TKN 401

Query: 401 LNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNR 458
           ++ L  LD+ +N+++        +W   +  ++LS N + G +       +  LDL  NR
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR 461

Query: 459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506
               IP  +  L  L  L +A+N L+         L  LQ I L  N 
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 69/424 (16%), Positives = 134/424 (31%), Gaps = 41/424 (9%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
              + L ++ N I+  +    + +L+ L  LR+S+N+ +  + F  F  +  L+      
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSH 109

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQH--ELRYVDLSHMNLRGEFPN 223
           NRL   I    +     L+++ LS    D   P    + +  +L ++ LS    R     
Sbjct: 110 NRL-QNISCCPMA---SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 224 WLLENNKELETLLLANNSLS-GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE 282
            +   +     L L +  +  G  +    P   +  +    N +           L  L+
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 283 HFNISRNVLN-GSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNL---TNLVTLQLD 338
             NI  N  N   +   L       +L  + L +         + F       +  L + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 339 ANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL 398
               T  I       S      L   H+                    N        A  
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVK-------------------NQVFLFSKEALY 325

Query: 399 CKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDI--LVTLDLS 455
                + +  L +++       C  S    T ++ ++N     +      +  L TL L 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 456 YNRFSGRIPNWIDKLSHLSYLILANN---NLEGEVPVQLC-LLKQLQLIDLSHNNLSGTI 511
            N              ++S L   +    +L      + C   + + +++LS N L+G++
Sbjct: 386 RNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 512 PSCL 515
             CL
Sbjct: 445 FRCL 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 82/478 (17%), Positives = 157/478 (32%), Gaps = 73/478 (15%)

Query: 209 YVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQG 268
            VD S+ NL    P  L       + L L+ NS+S      ++ L +L  + +S N I+ 
Sbjct: 35  MVDYSNRNLT-HVPKDLPPR---TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR- 89

Query: 269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF- 327
            +   +  F   LE+ ++S N L  +I C         SL+ L LS N        + F 
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRL-QNISCC-----PMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSL-LGGLYLSDNHISGKIPK--WLGNLSNLVDII 384
           NLT L  L L A +F       + +  L    L L   HI G   +   + N + L  + 
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 385 MPNNHLEGPIPANLCKLNFLTVLDLEVNNISG---------------------------- 416
            PN+     +  ++  L  L + ++++N+ +                             
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 417 ----SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI-------LVTLDLSYNRFSGRIPN 465
                L   F    +  +++    I  +++             L+   +    F      
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNY 525
                + ++  +L+ ++      V          ++ + N            T       
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF----------TDSVFQGC 373

Query: 526 DSAAPTSE----GNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMF 581
            +           N   +            S            +            + + 
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--AESIL 431

Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
            L+LS N LT    F+      ++ L+L +N +M +IP   +HL  ++ L+++ N L+
Sbjct: 432 VLNLSSNMLT-GSVFRCLPPK-VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 66/385 (17%), Positives = 130/385 (33%), Gaps = 37/385 (9%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENL-LNCSLLGGLYLSDN 364
             + L+LS NS+   +       L+ L  L+L  N+    +  ++ L    L  L +S N
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHN 110

Query: 365 HISGKIPKWLGNLSNLVDIIMPNNHLEG-PIPANLCKLNFLTVLDLEVNNISGSLPSCFS 423
            +   I      +++L  + +  N  +  P+      L  LT L L             +
Sbjct: 111 RLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 424 SWLLTQV--HLSRNKIEGQLEDVFGDI-LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN 480
              L+ +   L    I+G   +         L L ++  S         ++ L +L L+N
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 481 NNLEGEVPVQL-----CLLKQLQLIDLSHNNLSGT------IPSCLYKTALGEGNYDSAA 529
             L  E   +L      L +   L++++  ++  T      +    +   +   N  +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 530 PTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ---GRILKIMFGLDLS 586
            T   +              + S T  K   +E        + +     +   M    LS
Sbjct: 288 ITERIDRE----------EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 587 CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ--GKIPT 644
            +             +    LN + N    ++    S L ++++L L  N L+   K+  
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 645 QLVELYALAIFSVAHNNLSGKVPDR 669
               + +L    V+ N+L+    DR
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDR 422

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 60/373 (16%), Positives = 109/373 (29%), Gaps = 73/373 (19%)

Query: 11  WTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLY 70
                    +             N+ +  ++ +      L        V++L++ N  + 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 71  GTSDFQGL----CELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSP 126
              D +        L  L   H+       +          + I  ++ +     I    
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVC 348

Query: 127 LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNI 186
               +S   L  + N F     F+      +L+    Q+N                L+N 
Sbjct: 349 PPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRN---------------GLKNF 392

Query: 187 SLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSL-SGF 245
                               L  +D+S  +L     +      + +  L L++N L    
Sbjct: 393 FK-------VALMTKNMSS-LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 246 FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGC 305
           F+     +K L   D+  N I   IP  +   L  L+  N++ N L  S+P       G 
Sbjct: 445 FRCLPPKVKVL---DLHNNRIM-SIPKDV-THLQALQELNVASNQLK-SVP------DGV 492

Query: 306 FSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD-- 363
           F                      LT+L  + L  N +         +C+  G  YLS+  
Sbjct: 493 FD--------------------RLTSLQYIWLHDNPW---------DCTCPGIRYLSEWI 523

Query: 364 NHISGKIPKWLGN 376
           N  SG +    G+
Sbjct: 524 NKHSGVVRNSAGS 536

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 32/150 (21%), Positives = 72/150 (48%), Gaps = 14/150 (9%)

Query: 4   SSLLQSLWTPFPNLETLELRDYHLE--------LLNFTNLEVLILDGSAL-HIRFLQSIA 54
           +  +    +    L+TL L+   L+          N ++LE L +  ++L    + ++ A
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 55  VLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIA 114
              S+  L++ +  L G+  F+ L     ++ L +  N I  ++P  + ++ +L+ L++A
Sbjct: 426 WAESILVLNLSSNMLTGSV-FRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 115 SNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           SNQ+  ++       LTSL+ + + +N + 
Sbjct: 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 5/209 (2%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           + ++L L  N +Q  I   SF +L +L  LQL  N             + L  L L DN 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFSS 424
           ++         LS L ++ + NN +E        ++  L  LDL        +    F  
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 425 -WLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
              L  ++L+   +           L  LDLS N  S   P     L HL  L +  + +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 484 EGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
           +         L+ L  I+L+HNNL+  +P
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 67/285 (23%), Positives = 105/285 (36%), Gaps = 45/285 (15%)

Query: 231 ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNV 290
           +   ++    +L    ++P         +++ +N IQ  I       L  LE   +SRN 
Sbjct: 44  QFSKVICVRKNLR---EVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 291 LNGSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGG 345
           +  +I       +G F    +L  L L +N L   I + +F  L+ L  L L  N     
Sbjct: 100 IR-TIE------IGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES- 150

Query: 346 IPENLL-NCSLLGGLYLSD-NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF 403
           IP         L  L L +   +S         LSNL  + +   +L   IP  L  L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIK 208

Query: 404 LTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGR 462
           L  LDL  N++S   P  F   + L ++ + +++I+    + F                 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF----------------- 251

Query: 463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
                D L  L  + LA+NNL          L  L+ I L HN  
Sbjct: 252 -----DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 25/243 (10%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
           T+ R+L++  NQI   I  +  ++L  LE L++S N  +  I    F   + L       
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFD 121

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           NRL   I + +     +L+ + L     +            LR +DL  +          
Sbjct: 122 NRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 226 LENNKELETLLLANNSLSGFFQMP-VNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF 284
            E    L  L LA  +L    ++P + PL +L  +D+S N +   I  G    L  L+  
Sbjct: 181 FEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 285 NISRNVLNGSIPCSLHMTMGCFS----LQILALSNN---SLQGHIFSRSFNLTNLVTLQL 337
            + ++ +         +    F     L  + L++N    L   +F+    L +L  + L
Sbjct: 237 WMIQSQIQ-------VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHL 286

Query: 338 DAN 340
             N
Sbjct: 287 HHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 9/217 (4%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
           + F+ L    HL+ L +  N+I          + +L  L++  N++T  I +    YL+ 
Sbjct: 82  NSFKHL---RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR 192
           L+EL + NN  +  I    F     L++    + +    I   +      L+ ++L+ C 
Sbjct: 138 LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 193 CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
                   L    +L  +DLS  +L         +    L+ L +  + +    +   + 
Sbjct: 197 --LREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
           L+ L  I+++ N +   +P  +   L  LE  ++  N
Sbjct: 254 LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 10/185 (5%)

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
           TN   L L  NQ       +  +   L  L LS NHI          L+NL  + + +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 390 LEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSR-NKIEGQLEDVF 445
           L   IP      L+ L  L L  N I       F+  +  L ++ L    ++    E  F
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAF 181

Query: 446 GDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
             +  L  L+L+       IPN +  L  L  L L+ N+L    P     L  LQ + + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 504 HNNLS 508
            + + 
Sbjct: 240 QSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 51/190 (26%), Positives = 69/190 (36%), Gaps = 16/190 (8%)

Query: 331 NLVTLQLDANQFT---GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
               +            GI  N         L L +N I         +L +L  + +  
Sbjct: 44  QFSKVICVRKNLREVPDGISTNTRL------LNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLEDVFG 446
           NH+          L  L  L+L  N ++      F     L ++ L  N IE      F 
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 447 DI--LVTLDLS-YNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
            I  L  LDL    R S       + LS+L YL LA  NL  E+P  L  L +L  +DLS
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 504 HNNLSGTIPS 513
            N+LS  I  
Sbjct: 216 GNHLS-AIRP 224

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 18/214 (8%)

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQLTTID 260
             L  + LS  ++R             L TL L +N L+    G F      L +L  + 
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV----YLSKLKELW 142

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG 320
           +  N I+  IP+     +P L   ++        I        G  +L+ L L+  +L+ 
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMCNLRE 199

Query: 321 -HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN 379
               +    L  L  L L  N  +   P +      L  L++  + I         NL +
Sbjct: 200 IPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 380 LVDIIMPNNHLEGPIPANLCK-LNFLTVLDLEVN 412
           LV+I + +N+L   +P +L   L+ L  + L  N
Sbjct: 257 LVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV 55
            ++++    +     L+ L LR+  +E +         +L  L L      + ++   A 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAF 181

Query: 56  --LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDI 113
             L+++++L++  C L    +   L   + L EL +  N++    P     +  L+ L +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPL---IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 114 ASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFY 162
             +QI   I  +    L SL E+ +++N   + +  + F     L++ +
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDY-HLELL------NFTNLEVLILDGSALHIRFLQSIA 54
            + S+    +   P+L  L+L +   L  +        +NL  L L     ++R + ++ 
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLREIPNLT 204

Query: 55  VLTSVKHLSMRNCYLY--GTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD 112
            L  +  L +   +L       FQGL   +HLQ+L +  + I         N+ SL  ++
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGL---MHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 113 IASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           +A N +T  +       L  LE + + +N + 
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L  N++         +L  +  L LS N++       F+ L+ + +L+L  N L   I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 643 PTQ-LVELYALAIFSVAHNNLS 663
           P    V L  L    + +N + 
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L+   L          L  +  L+LS N+L    P +F  L  ++ L +  + +Q   
Sbjct: 190 LNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
                 L +L   ++AHNNL+    D               N   C
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNMLQG 640
           L L  N +   IP      +  +R L+L     +  I    F  LS +  L+L+   L+ 
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 641 KIPTQLVELYALAIFSVAHNNLS 663
           +IP  L  L  L    ++ N+LS
Sbjct: 199 EIPN-LTPLIKLDELDLSGNHLS 220

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 52/279 (18%), Positives = 103/279 (36%), Gaps = 30/279 (10%)

Query: 248 MPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF- 306
           +P    + + ++D+S N I  +I          L+   ++ N +N +I          F 
Sbjct: 46  IPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIE------EDSFS 97

Query: 307 ---SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYL 361
              SL+ L LS N L  ++ S  F  L++L  L L  N +      +L  + + L  L +
Sbjct: 98  SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 362 SDNHISGKIP-KWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS 420
            +     KI  K    L+ L ++ +  + L+   P +L  +  ++ L L +      L  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

Query: 421 CFSSWL--LTQVHLSRNKIEG-QLEDVFGDI---------LVTLDLSYNRFSGRIPNWID 468
            F      +  + L    ++     ++                + ++      ++   ++
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
           ++S L  L  + N L+         L  LQ I L  N  
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 25/258 (9%)

Query: 270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-N 328
           IP+G+   +  L   ++S N +       L     C +LQ L L++N +   I   SF +
Sbjct: 46  IPSGLTEAVKSL---DLSNNRITYISNSDLQ---RCVNLQALVLTSNGIN-TIEEDSFSS 98

Query: 329 LTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHISGKIPK-WLGNLSNLVDIIMP 386
           L +L  L L  N  +  +  +     S L  L L  N            +L+ L  + + 
Sbjct: 99  LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 387 NNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLEDV 444
           N      I       L FL  L+++ +++    P    S   ++ + L   +    LE  
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 445 FGDI--LVTLDLSYNRFSGRIPNWI--------DKLSHLSYLILANNNLEGEVPVQLCLL 494
                 +  L+L          + +         K      + + + +L  +V   L  +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 495 KQLQLIDLSHNNLSGTIP 512
             L  ++ S N L  ++P
Sbjct: 277 SGLLELEFSRNQLK-SVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 32/271 (11%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
           SD Q     V+LQ L +  N I         ++ SL  LD++ N ++ N+SSS  + L+S
Sbjct: 70  SDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSS 125

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR 192
           L  L +  N ++       F + +KL+         F +I+         L+ + +    
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 193 CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
                P+ L     + ++ L             ++    +E L L +  L          
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDT------FH 238

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILA 312
             +L+T   + + I+               +  I+      S+   + +      L  L 
Sbjct: 239 FSELSTG-ETNSLIK----------KFTFRNVKITDE----SLFQVMKLLNQISGLLELE 283

Query: 313 LSNNSLQG---HIFSRSFNLTNLVTLQLDAN 340
            S N L+     IF     LT+L  + L  N
Sbjct: 284 FSRNQLKSVPDGIFD---RLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 52/305 (17%), Positives = 99/305 (32%), Gaps = 49/305 (16%)

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNF 403
           G+ E + +      L LS+N I+      L    NL  +++ +N +   I  +    L  
Sbjct: 49  GLTEAVKS------LDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGS 101

Query: 404 LTVLDLEVNNISGSLPSCFSSWL-----LTQVHLSRNKIEG-QLEDVFGDI--LVTLDLS 455
           L  LDL  N +S +L S   SW      LT ++L  N  +      +F  +  L  L + 
Sbjct: 102 LEHLDLSYNYLS-NLSS---SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 456 YNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC 514
                 +I       L+ L  L +  ++L+   P  L  ++ +  + L        +   
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEI 216

Query: 515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQG 574
                      +      +  + +     GE  S     T R                  
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRN----------------- 258

Query: 575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLS 634
                   + ++   L  ++   +  ++ +  L  S N L       F  L+ ++ + L 
Sbjct: 259 --------VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 635 YNMLQ 639
            N   
Sbjct: 310 TNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 37/143 (25%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKH 61
               LL+       ++E LELRD  L+  +F+ L                          
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG----------------------- 245

Query: 62  LSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGN 121
                       +   L +    + + I   ++   +   L  ++ L  L+ + NQ+  +
Sbjct: 246 ------------ETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-S 291

Query: 122 ISSSPLRYLTSLEELRVSNNQFQ 144
           +       LTSL+++ +  N + 
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 11/126 (8%)

Query: 577 LKIMFGLDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSY 635
           L  +  L +       +I  +    L  +  L +  ++L    P +   +  +  L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 636 NMLQGKIPT---------QLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSL 686
                 +           + +EL    + +   + LS    + + +  TF        SL
Sbjct: 208 KQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 687 LCGQPL 692
                L
Sbjct: 267 FQVMKL 272

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 56/209 (26%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDN 364
           + Q + L  N +  H+ + SF    NL  L L +N     I        +LL  L LSDN
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDN 90

Query: 365 HISGKIPK-WLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCF 422
                +       L  L  + +    L+  +       L  L  L L+ N +  +LP   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 423 SSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
              L  LT + L  N+I    E  F  +  L  L L  NR +   P+    L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 479 ANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
             NNL       L  L+ LQ + L+ N  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 7/189 (3%)

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
                + L  N+ +     +   C  L  L+L  N ++         L+ L  + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 390 LEGPIPAN-LCKLNFLTVLDLEVNNISGSLPS-CFSS-WLLTQVHLSRNKIEGQLEDVFG 446
               +       L  L  L L+   +   L    F     L  ++L  N ++   +D F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSH 504
           D+  L  L L  NR S         L  L  L+L  N +    P     L +L  + L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 505 NNLSGTIPS 513
           NNLS  +P+
Sbjct: 211 NNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 4/206 (1%)

Query: 84  LQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
            Q + +  N I            +L IL + SN +   I ++    L  LE+L +S+N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 144 QIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYY 203
              +    F    +L   +  +  L  E+          LQ + L               
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 204 QHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSK 263
              L ++ L    +    P         L+ LLL  N ++         L +L T+ +  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 264 NFIQGHIPTGIGAFLPRLEHFNISRN 289
           N +   +PT   A L  L++  ++ N
Sbjct: 211 NNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 54/243 (22%), Positives = 83/243 (34%), Gaps = 30/243 (12%)

Query: 189 SGCRCDFTFPRFLYYQH------------ELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
             C C                          + + L    +    P       + L  L 
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILW 62

Query: 237 LANNSLS----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
           L +N L+      F      L  L  +D+S N     +       L RL   ++ R  L 
Sbjct: 63  LHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 293 GSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL 351
             +   L    G  +LQ L L +N+LQ  +   +F +L NL  L L  N+ +  +PE   
Sbjct: 119 -ELGPGLFR--GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAF 173

Query: 352 -NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDL 409
                L  L L  N ++   P    +L  L+ + +  N+L   +P   L  L  L  L L
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL 232

Query: 410 EVN 412
             N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 3/184 (1%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
             +L  L +  N +          +  L  LD++ N    ++  +    L  L  L +  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
              Q  +    F   + L+  Y Q N L   +   +      L ++ L G R      R 
Sbjct: 115 CGLQE-LGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
               H L  + L    +          +   L TL L  N+LS      + PL+ L  + 
Sbjct: 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 261 VSKN 264
           ++ N
Sbjct: 232 LNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 2   NVSSLLQSLWTPFPNLETLELRD-YHLELL------NFTNLEVLILDGSALHIRFLQS-- 52
            ++ +  + +T    LE L+L D   L  +          L  L LD     ++ L    
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGL 124

Query: 53  IAVLTSVKHLSMRNCYLYGTSD--FQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI 110
              L ++++L +++  L    D  F+ L    +L  L +  N I          + SL  
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 111 LDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN 166
           L +  N++  ++     R L  L  L +  N     +  E       L+      N
Sbjct: 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 583 LDLSCNKLTGEIP---FQIGYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNML 638
           L L  N L   I    F    L ++  L+LS N  + ++   TF  L ++ +L L    L
Sbjct: 61  LWLHSNVLA-RIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 639 QGKIPTQ-LVELYALAIFSVAHNNLSGKVPDRV 670
           Q ++       L AL    +  N L   +PD  
Sbjct: 118 Q-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L L  N L   +P      L  +  L L  N +       F  L  ++ L L  N +   
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY---DGNSLLC 688
            P    +L  L    +  NNLS  +P      A      Y   + N  +C
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEA--LAPLRALQYLRLNDNPWVC 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 4e-16
 Identities = 73/437 (16%), Positives = 138/437 (31%), Gaps = 68/437 (15%)

Query: 97  TLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHS 156
           ++   + N  SL   +   N I+    +         E+  +        +S       +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 157 KLKKFYGQKNRLFVEIESHSLTPKF--QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSH 214
           +  +    +  L       SL      Q+  + ++      + P        L Y+D   
Sbjct: 60  QFSELQLNRLNL------SSLPDNLPPQITVLEITQNALI-SLPELP---ASLEYLDACD 109

Query: 215 MNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGI 274
             L    P         L+ L + NN L+    +P  P   L  I+   N +     T +
Sbjct: 110 NRLS-TLPELP----ASLKHLDVDNNQLT---MLPELP-ALLEYINADNNQL-----TML 155

Query: 275 GAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG---HIFSRSFNLTN 331
                 LE  ++  N L   +P          SL+ L +S N L+           +   
Sbjct: 156 PELPTSLEVLSVRNNQLT-FLPELPE------SLEALDVSTNLLESLPAVPVRNHHSEET 208

Query: 332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE 391
            +  +   N+ T  IPEN+L+      + L DN +S +I + L   +   D   P     
Sbjct: 209 EIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR---- 263

Query: 392 GPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE-----DVFG 446
                      + ++ D + N +   L    ++W         ++I    E     + F 
Sbjct: 264 ----------IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

Query: 447 DILVTLDLSYN-----RFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-----LLKQ 496
             L  L  + +      F  ++  W++KLS  + L   +  +  +               
Sbjct: 314 AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNN 373

Query: 497 LQLIDLSHNNLSGTIPS 513
           L+   L H    G   +
Sbjct: 374 LRKTLLVHQASEGLFDN 390

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 48/253 (18%)

Query: 14  FPNLETLELRDYHLELL--NFTNLEVLILDGSAL-----HIRFLQSIAV----------- 55
            P +  LE+    L  L     +LE L    + L         L+ + V           
Sbjct: 79  PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPEL 138

Query: 56  LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS 115
              +++++  N  L    +         L+ L +  N +   LP       SL  LD+++
Sbjct: 139 PALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQL-TFLPELP---ESLEALDVST 189

Query: 116 NQITGNISSSPLRYLTSLEE----LRVSNNQF-QIPISFEPFFNHSKLKKFYGQKNRLFV 170
           N +  ++ + P+R     EE     R   N+   IP +     +         + N L  
Sbjct: 190 NLLE-SLPAVPVR-NHHSEETEIFFRCRENRITHIPEN---ILSLDPTCTIILEDNPL-- 242

Query: 171 EIESHSLTPKFQLQNISL----SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
                S   +  L   +      G R  F+              D           + + 
Sbjct: 243 -----SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

Query: 227 ENNKELETLLLAN 239
           +     E    AN
Sbjct: 298 QIWHAFEHEEHAN 310

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 20/145 (13%)

Query: 7   LQSLWTPFPNLETLELRDYHLELL--NFTNLEVLILDGSALHIRFLQSI-AVLTSVKHLS 63
           L +L     +L+ L++ +  L +L      LE +  D +      L  +  + TS++ LS
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQ-----LTMLPELPTSLEVLS 166

Query: 64  MRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLR----ILDIASNQIT 119
           +RN  L    +         L+ L +  N +  +LP   V                N+IT
Sbjct: 167 VRNNQLTFLPE-----LPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 120 GNISSSPLRYLTSLEELRVSNNQFQ 144
            +I  + +  L     + + +N   
Sbjct: 221 -HIPEN-ILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 412 NNISGSLPSCFSSW-LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKL 470
           +       S +  W        +RN+    L++   +    L L+    S  +P+ +   
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNL--P 79

Query: 471 SHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
             ++ L +  N L   +P     L+ L   D   N LS T+P   
Sbjct: 80  PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TLPELP 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L L+   L+  +P  +     I  L ++ N L  ++P   + L   E LD   N L   +
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNAL-ISLPELPASL---EYLDACDNRLS-TL 115

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           P     L  L    V +N L+  +P+    
Sbjct: 116 PELPASLKHL---DVDNNQLT-MLPELPAL 141

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 583 LDLSCNKLTGEIPFQIGYL----NMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNML 638
           LD+S N L   +P                    N +   IP     L    ++ L  N L
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL 242

Query: 639 QGKIPTQLVELYALAIFSVAHNNLS 663
             +I   L +  A   +       S
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LD+  N+LT  +P     L     +N  +N L   +P   + L   E L +  N L   +
Sbjct: 125 LDVDNNQLT-MLPELPALL---EYINADNNQL-TMLPELPTSL---EVLSVRNNQLT-FL 175

Query: 643 PTQLVELYALAIFSVAHNNLSGKVPDRVGQ 672
           P     L AL    V+ N L   +P    +
Sbjct: 176 PELPESLEAL---DVSTNLLES-LPAVPVR 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 21/213 (9%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFT---GGIPENLLNCSLLGGLYLS 362
           S + L LS N L+ H+ S SF +   L  L L   +      G  ++L +   L  L L+
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLILT 84

Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS- 420
            N I          LS+L  ++    +L   +       L  L  L++  N I  S    
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 421 -CFSS-WLLTQVHLSRNKIEGQLEDVFG------DILVTLDLSYNRFSGRIPNWIDKLSH 472
             FS+   L  + LS NKI+               + ++LDLS N  +  I     K   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505
           L  L L  N L+         L  LQ I L  N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 29/218 (13%)

Query: 256 LTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF----SLQIL 311
              +D+S N ++ H+ +      P L+  ++SR  +  +I        G +     L  L
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIE------DGAYQSLSHLSTL 81

Query: 312 ALSNN---SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDNHI- 366
            L+ N   SL    FS    L++L  L          +    + +   L  L ++ N I 
Sbjct: 82  ILTGNPIQSLALGAFS---GLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPA----NLCKLNFLTV-LDLEVNNISGSLPSC 421
           S K+P++  NL+NL  + + +N ++  I       L ++  L + LDL +N ++   P  
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 422 FSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYN 457
           F    L ++ L  N+++   + +F  +  L  + L  N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC-KLNF 403
            +P +  N      L LS N +         +   L  + +    ++  I       L+ 
Sbjct: 25  NLPFSTKN------LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 404 LTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRF 459
           L+ L L  N I  SL     S L  L ++      +        G +  L  L++++N  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 460 -SGRIPNWIDKLSHLSYLILANNNL---EGEVPVQLCLLKQLQL-IDLSHNNLSGTIPS 513
            S ++P +   L++L +L L++N +          L  +  L L +DLS N ++  I  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 46/216 (21%), Positives = 72/216 (33%), Gaps = 45/216 (20%)

Query: 231 ELETLLLANNSLS----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI 286
           EL+ L L+   +     G +      L  L+T+ ++ N IQ  +  G  + L  L+    
Sbjct: 53  ELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 287 SRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGG 345
               L  S+           +L+ L +++N +Q       F NLTNL  L L +N+    
Sbjct: 108 VETNLA-SLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-S 163

Query: 346 IPENLLNC-----SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK 400
           I    L        L   L LS N ++                          I     K
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF-------------------------IQPGAFK 198

Query: 401 LNFLTVLDLEVNNISGSLPSCFSSW-LLTQVHLSRN 435
              L  L L+ N +       F     L ++ L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 26/185 (14%)

Query: 81  LVHLQELHIGYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
           L HL  L +  N I  +L       ++SL+ L      +  ++ + P+ +L +L+EL V+
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 140 NNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPR 199
           +N  Q     E F N + L+      N++   I    L    Q+  ++LS          
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLS---------- 181

Query: 200 FLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTI 259
                     +DLS   +         +  + L+ L L  N L        + L  L  I
Sbjct: 182 ----------LDLSLNPMN-FIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 260 DVSKN 264
            +  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 15  PNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV---LTSVKHLSMR 65
            +L+ L   + +L  L      +   L+ L +      I+  +       LT+++HL + 
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 66  NCYL--YGTSDFQGLCELVHLQ-ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
           +  +     +D + L ++  L   L +  N +   +         L+ L + +NQ+  ++
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SV 215

Query: 123 SSSPLRYLTSLEELRVSNNQFQ 144
                  LTSL+++ +  N + 
Sbjct: 216 PDGIFDRLTSLQKIWLHTNPWD 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 2e-15
 Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 23/240 (9%)

Query: 29  LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
              F       L      +    +   L S+  +   N  +      QG+  L ++ +L 
Sbjct: 17  DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLF 71

Query: 89  IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
           +  N +    P  L N+ +L  L +  N+I  ++  S L+ L  L+ L + +N       
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL--SSLKDLKKLKSLSLEHNGIS---D 123

Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIES-HSLTPKFQLQNISLSGCRCDFTFPRFLYYQHEL 207
                +  +L+  Y   N++  +I     LT   +L  +SL   +   +    L    +L
Sbjct: 124 INGLVHLPQLESLYLGNNKI-TDITVLSRLT---KLDTLSLEDNQ--ISDIVPLAGLTKL 177

Query: 208 RYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQ 267
           + + LS  ++  +     L   K L+ L L +           + L    T+  +   + 
Sbjct: 178 QNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 1e-14
 Identities = 42/251 (16%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 47  IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMT 106
           I+ +            +++   +   +D     EL  + ++    ++I       +  + 
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLP 65

Query: 107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN 166
           ++  L +  N++T      PL  L +L  L +  N+ +         +  KLK    + N
Sbjct: 66  NVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHN 119

Query: 167 RLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
            +  +I    L    QL+++ L   +   T    L    +L  + L    +    P   L
Sbjct: 120 GI-SDIN--GLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVP---L 171

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI 286
               +L+ L L+ N +S      +  LK L  +++                   L   N 
Sbjct: 172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN----HQSNLVVPNT 225

Query: 287 SRNVLNGSIPC 297
            +N  +GS+  
Sbjct: 226 VKN-TDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 48/325 (14%), Positives = 88/325 (27%), Gaps = 56/325 (17%)

Query: 108 LRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNR 167
           +      S  I   I   P        +  +                 + + +     + 
Sbjct: 1   MGETITVSTPIK-QIF--PDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS- 53

Query: 168 LFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLE 227
                          ++++              + Y   +  + L+   L    P   L 
Sbjct: 54  --------------DIKSVQ------------GIQYLPNVTKLFLNGNKLTDIKP---LT 84

Query: 228 NNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFN 285
           N K L  L L  N +       +  LK+L ++ +  N I     + I     LP+LE   
Sbjct: 85  NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGI-----SDINGLVHLPQLESLY 137

Query: 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG 345
           +  N +   I     +T     L  L+L +N +          LT L  L L  N  +  
Sbjct: 138 LGNNKIT-DITVLSRLT----KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-- 188

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
               L     L  L L       K      NL     +   +  L    P  +       
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYE 246

Query: 406 VLDLEVNNISGSLPSCFSSWLLTQV 430
             +++ +    +    F  +    +
Sbjct: 247 KPNVKWHLPEFTNEVSFIFYQPVTI 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 58/371 (15%), Positives = 117/371 (31%), Gaps = 28/371 (7%)

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFI 266
           +  +  ++ +++       ++    +  L L  N L+     P+  LK L  + + +N I
Sbjct: 45  IDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKI 99

Query: 267 QGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS 324
                  + +   L +L+  ++  N ++  I   +H+      L+ L L NN +     +
Sbjct: 100 -----KDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLP----QLESLYLGNNKIT--DIT 147

Query: 325 RSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDII 384
               LT L TL L+ NQ +      L   + L  LYLS NHIS      L  L NL  + 
Sbjct: 148 VLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203

Query: 385 MPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDV 444
           + +         +   L     +     ++                              
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 445 FGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE-----GEVPVQLCLLKQLQL 499
                VT+  +  RF GR+   + ++  +SY +              +       KQ  +
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYV 323

Query: 500 IDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEE 559
               +   +G          +   ++   A         +           G++ + K  
Sbjct: 324 FKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLP 383

Query: 560 SVEFRTKNTSY 570
             +   K  + 
Sbjct: 384 REDNSLKQGTL 394

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 19/258 (7%)

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
                    +    ++++    +    L  +TT+      +   I  G+   L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLE 69

Query: 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG 345
           +  N +   +    ++T     +  L LS N L+    S    L ++ TL L + Q T  
Sbjct: 70  LKDNQIT-DLAPLKNLT----KITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD- 121

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT 405
               L   S L  LYL  N I+   P  L  L+NL  + + N  +    P  L  L+ LT
Sbjct: 122 -VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 406 VLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465
            L  + N IS  +    S   L +VHL  N+I           L  + L+    + +   
Sbjct: 177 TLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF 235

Query: 466 WIDKLSHLSYLILANNNL 483
           + + L   + +   +   
Sbjct: 236 YNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 42/258 (16%), Positives = 86/258 (33%), Gaps = 49/258 (18%)

Query: 14  FPNLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
             N   +     ++       +   +  L   G+   +  ++ +  L ++  L +++  +
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT--GVTTIEGVQYLNNLIGLELKDNQI 75

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
              +D   L  L  + EL +  N +       +  + S++ LD+ S QIT     +PL  
Sbjct: 76  ---TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT---DVTPLAG 127

Query: 130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLS 189
           L++L+ L +  NQ     +  P    + L+       ++        LTP   L      
Sbjct: 128 LSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQV------SDLTPLANLSK---- 174

Query: 190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMP 249
                            L  +      +    P   L +   L  + L NN +S     P
Sbjct: 175 -----------------LTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDV--SP 212

Query: 250 VNPLKQLTTIDVSKNFIQ 267
           +     L  + ++   I 
Sbjct: 213 LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 52/334 (15%), Positives = 112/334 (33%), Gaps = 62/334 (18%)

Query: 47  IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMT 106
           I  +     L +   ++     +   +D     +L  +  L      +       +  + 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIEG--VQYLN 63

Query: 107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN 166
           +L  L++  NQIT     +PL+ LT + EL +S N  +   +         +K       
Sbjct: 64  NLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTST 117

Query: 167 RLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
           ++        +TP   L N                     L+ + L    +        L
Sbjct: 118 QI------TDVTPLAGLSN---------------------LQVLYLDLNQIT-NISP--L 147

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHF 284
                L+ L + N  +S     P+  L +LTT+    N I     + I     LP L   
Sbjct: 148 AGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI-----SDISPLASLPNLIEV 200

Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG 344
           ++  N ++  +    + +    +L I+ L+N ++       + NL     ++  +     
Sbjct: 201 HLKNNQIS-DVSPLANTS----NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI- 254

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLS 378
             P  + +         +  +++  +  ++ N+S
Sbjct: 255 -APATISD-----NGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 38/241 (15%)

Query: 278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQL 337
           L         ++ +  ++  +         +  L+     +   I      L NL+ L+L
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA-----DLDGITTLSAFGTGVT-TIEGVQ-YLNNLIGLEL 70

Query: 338 DANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN 397
             NQ T      L N + +  L LS N +       +  L ++  + + +  +    P  
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 398 LCKLNFLTVLDLEVNNIS-----GSLPSCFSSWLLTQVHLSRNKIE-----GQLEDVFGD 447
           L  L+ L VL L++N I+       L +      L  + +   ++        L      
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTN------LQYLSIGNAQVSDLTPLANLSK---- 174

Query: 448 ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
            L TL    N+ S  I   +  L +L  + L NN +    P  L     L ++ L++  +
Sbjct: 175 -LTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

Query: 508 S 508
           +
Sbjct: 230 T 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 54/290 (18%)

Query: 101 CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK 160
               + +   +    + +T    +     L  +  L           + E     + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGE 220
              + N++        L P   L                       +  ++LS   L+  
Sbjct: 68  LELKDNQI------TDLAPLKNLTK---------------------ITELELSGNPLKNV 100

Query: 221 FPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF--L 278
                +   + ++TL L +  ++     P+  L  L  + +  N I     T I     L
Sbjct: 101 SA---IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI-----TNISPLAGL 150

Query: 279 PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLD 338
             L++ +I    ++   P +         L  L   +N +     S   +L NL+ + L 
Sbjct: 151 TNLQYLSIGNAQVSDLTPLA-----NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLK 203

Query: 339 ANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
            NQ +      L N S L  + L++  I+ +   +  NL     +  P+ 
Sbjct: 204 NNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 13/182 (7%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
            L N + +    +  T        +   +  L      ++  I   +  L+NL+ + + +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD 447
           N +    P  L  L  +T L+L  N +  ++ +      +  + L+  +I   +  + G 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT-DVTPLAGL 128

Query: 448 I-LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506
             L  L L  N+ +  I   +  L++L YL + N  +    P  L  L +L  +    N 
Sbjct: 129 SNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 507 LS 508
           +S
Sbjct: 185 IS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 33/141 (23%)

Query: 374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLS 433
              L+N + I    +++   +      L+ +T L      ++                  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT------------------ 54

Query: 434 RNKIEG--QLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQL 491
              IEG   L +     L+ L+L  N+ +  +   +  L+ ++ L L+ N L+      +
Sbjct: 55  --TIEGVQYLNN-----LIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--I 103

Query: 492 CLLKQLQLIDLSHNNLSGTIP 512
             L+ ++ +DL+   ++   P
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP 124

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 6e-14
 Identities = 56/275 (20%), Positives = 90/275 (32%), Gaps = 17/275 (6%)

Query: 208 RYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQ 267
           R        +  E P+ L  N      L      L    +   +    L  I++S+N + 
Sbjct: 12  RVFLCQESKVT-EIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 268 GHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF 327
             I   + + LP+L    I +      I           +LQ L +SN  ++ H+     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 328 -NLTNLVTLQLDANQFTGGIPENLLN--CSLLGGLYLSDNHISGKIPKWLGNLSNLVDII 384
            +    V L +  N     I  N           L+L+ N I                 +
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 385 MPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQL 441
             NN+LE  +P +     +   +LD+    I  SLPS     L  L        K    L
Sbjct: 185 SDNNNLEE-LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL 242

Query: 442 EDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYL 476
           E +    L+   L+Y        NW  ++S L  +
Sbjct: 243 EKLVA--LMEASLTYPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 22/242 (9%)

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN-N 141
           +  EL      +             L  ++I+ N +   I +     L  L E+R+   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 142 QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPR-- 199
                I+ E F N   L+        +   +         Q   + +       T  R  
Sbjct: 91  NLLY-INPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 200 FLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQ 255
           F+    E   + L+   ++ E  N      +  E  L  NN+L       F         
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG----ASG 203

Query: 256 LTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN 315
              +D+S+  I   +P+     L +L   +         +P    +     +L   +L+ 
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYN---LKKLPTLEKLV----ALMEASLTY 255

Query: 316 NS 317
            S
Sbjct: 256 PS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSD- 363
           +   L      L+  I   +F    +L  +++  N     I  ++  N   L  + +   
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CF 422
           N++    P+   NL NL  +++ N  ++     +        +LD++ N    ++    F
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 423 S--SWLLTQVHLSRNKIEGQLEDVFGD--ILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
              S+    + L++N I+      F    +        N       +     S    L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 479 ANNNLEGEVPVQLCLLKQL-QLIDLSHNNLSGTIPS 513
           +   +     +    L+ L +L   S  NL   +P+
Sbjct: 210 SRTRIH---SLPSYGLENLKKLRARSTYNLK-KLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 41/241 (17%), Positives = 72/241 (29%), Gaps = 25/241 (10%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAV-----LTSVKHL 62
             N   L      L ++       F +LE + +  +      L+ I       L  +  +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN----DVLEVIEADVFSNLPKLHEI 84

Query: 63  SMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNI 122
            +         + +    L +LQ L I    I        ++     +LDI  N     I
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 123 SSSPLRYLTS-LEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPK 180
             +    L+     L ++ N  Q I       FN ++L +     N    E+ +      
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIH---NSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 181 FQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN 240
                + +S  R        L    +LR     ++    + P   LE    L    L   
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT--LEKLVALMEASLTYP 256

Query: 241 S 241
           S
Sbjct: 257 S 257

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 22/208 (10%)

Query: 307 SLQILALSNNSLQ---GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD 363
           S   +     +L      +        +   L L  N         L+  + L  L L  
Sbjct: 11  SHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CF 422
             ++ K+    G L  L  + + +N L+  +P     L  LTVLD+  N ++ SLP    
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 423 SSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWI-DKLSHLSYLI 477
              L  L +++L  N+++     +      L  L L+ N  +  +P  + + L +L  L+
Sbjct: 121 RG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 478 LANNNLEGEVPVQLCLLKQLQLIDLSHN 505
           L  N+L   +P        L    L  N
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 22/194 (11%)

Query: 328 NLTNLVTLQLDANQFT---GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDII 384
            + + + +  D    T     +P++         L+LS+N +       L   + L  + 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTI------LHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 385 MPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLE 442
           +    L   +  +   L  L  LDL  N +  SLP    + L  LT + +S N++     
Sbjct: 62  LDRAELTK-LQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPL 117

Query: 443 DVFGDI--LVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCL-LKQLQ 498
                +  L  L L  N     +P  +      L  L LANNNL  E+P  L   L+ L 
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 499 LIDLSHNNLSGTIP 512
            + L  N+L  TIP
Sbjct: 176 TLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 232 LETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVL 291
              L L+ N L  F    + P  +LT +++ +  +   +       LP L   ++S N L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHNQL 89

Query: 292 NGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENL 350
             S+P          +L +L +S N L   +   +   L  L  L L  N+    +P  L
Sbjct: 90  Q-SLPLLGQ---TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 351 LNC-SLLGGLYLSDNHISGKIPKWL-GNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLD 408
           L     L  L L++N+++ ++P  L   L NL  +++  N L   IP      + L    
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

Query: 409 LEVN 412
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 43/240 (17%), Positives = 69/240 (28%), Gaps = 70/240 (29%)

Query: 82  VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
                LH+  N +       L+  T L  L++   ++T          L  L  L +S+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 142 QFQ-IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
           Q Q +P+  +       L       N               +L ++              
Sbjct: 88  QLQSLPLLGQ---TLPALTVLDVSFN---------------RLTSL-------------- 115

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQL 256
                                P   L    EL+ L L  N L     G       P  +L
Sbjct: 116 ---------------------PLGALRGLGELQELYLKGNELKTLPPGLLT----PTPKL 150

Query: 257 TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN 316
             + ++ N +   +P G+   L  L+   +  N L  +IP       G   L    L  N
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLELL----NFTNLEVLILDGSALHIRFLQSIAV-- 55
            + +   +   P+  L  L L    L  L        L  L L  + L     QS+ +  
Sbjct: 42  LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-----QSLPLLG 96

Query: 56  --LTSVKHLSMRNCYLYGTSD--FQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRIL 111
             L ++  L +    L        +GL     LQEL++  N +    P  L     L  L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 112 DIASNQITGNISSSPLRYLTSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKN 166
            +A+N +T  + +  L  L +L+ L +  N    IP   + FF    L   +   N
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L+L   +LT       G L ++  L+LSHN L  ++P     L  +  LD+S+N L   +
Sbjct: 60  LNLDRAELTKLQVD--GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 643 P-------TQLVELY 650
           P        +L ELY
Sbjct: 116 PLGALRGLGELQELY 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           LDLS N+L   +P     L  +  L++S N L          L +++ L L  N L+  +
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 643 P-------TQLVELY 650
           P        +L +L 
Sbjct: 140 PPGLLTPTPKLEKLS 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 14  FPNLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
             N++ L + + H      +   +NLE L + G  +    + +++ LTS+  L + +   
Sbjct: 65  AHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
              S    +  L  +  + + YN     +   L  +  L+ L+I  + +        +  
Sbjct: 125 -DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIED 179

Query: 130 LTSLEELRVSNNQ 142
              L +L   +  
Sbjct: 180 FPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
                +   L  +         + +   L  + L++ +++      +    N+ D+ + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSS-WLLTQVHLSRNKIEGQLEDVFG 446
            H     P  +  L+ L  L +   +++       S    LT + +S +  +  +     
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSH 504
            +  + ++DLSYN     I   +  L  L  L +  + +       +    +L  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 505 NNLSG 509
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 27  LELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQE 86
           +      +L  + L     ++  L  I    ++K L++ N +    +++  +  L +L+ 
Sbjct: 38  ITEAQMNSLTYITLANI--NVTDLTGIEYAHNIKDLTINNIHA---TNYNPISGLSNLER 92

Query: 87  LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIP 146
           L I   ++       L  +TSL +LDI+ +    +   + +  L  +  + +S N   I 
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNG-AIT 150

Query: 147 ISFEPFFNHSKLKKFYGQKNRL 168
               P     +LK    Q + +
Sbjct: 151 -DIMPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI 366
           +++ L ++N       ++    L+NL  L++     T     NL   + L  L +S +  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS-----GSLPSC 421
              I   +  L  +  I +  N     I   L  L  L  L+++ + +         P  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK- 182

Query: 422 FSSWLLTQVHLSRNKI 437
                L Q++     I
Sbjct: 183 -----LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 15  PNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
            NLE L +    +       L   T+L +L +  SA     L  I  L  V  + +    
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITG 120
               +D   L  L  L+ L+I ++ +       + +   L  L   S  I G
Sbjct: 148 A--ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/148 (11%), Positives = 53/148 (35%), Gaps = 24/148 (16%)

Query: 376 NLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISG--SLPSCFSSWLLTQVHLS 433
                ++ ++  +       A +  L ++T+ ++ V +++G     +      +  + ++
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN------IKDLTIN 74

Query: 434 RNKIEGQLEDVFGDI--------LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG 485
                        +         L  L +     +      +  L+ L+ L ++++  + 
Sbjct: 75  NIHAT--------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 486 EVPVQLCLLKQLQLIDLSHNNLSGTIPS 513
            +  ++  L ++  IDLS+N     I  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS 241
            L  I+L+    + T    + Y H ++ + +++++     P   +     LE L +    
Sbjct: 45  SLTYITLANI--NVTDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKD 99

Query: 242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHM 301
           ++      ++ L  LT +D+S +     I T I   LP++   ++S N     I     +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIMPLKTL 158

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG 344
                 L+ L +  + +    +    +   L  L   +    G
Sbjct: 159 P----ELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L +    +T +    +  L  +  L++SH+    +I +  + L ++ S+DLSYN     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 643 PTQLVELYALAIFSVAHNNLS 663
              L  L  L   ++  + + 
Sbjct: 153 -MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI 642
           L ++    T   P  I  L+ +  L +   ++        S L+ +  LD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 643 PTQLVELYALAIFSVAHNNL 662
            T++  L  +    +++N  
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 18/97 (18%)

Query: 427 LTQVHLSRNKIEGQLEDVFGDI--------LVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
           LT + L+   +         D+        +  L ++    +   P  I  LS+L  L +
Sbjct: 46  LTYITLANINVT--------DLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 479 ANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL 515
              ++  +    L  L  L L+D+SH+    +I + +
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 21/251 (8%)

Query: 234 TLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG 293
             +     +   F    +   +    ++ K  +   +       L  ++    + + +  
Sbjct: 6   ETITVPTPIKQIF--SDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK- 59

Query: 294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNC 353
           S+    ++     ++  L L+ N L   I   + NL NL  L LD N+       +L + 
Sbjct: 60  SVQGIQYLP----NVTKLFLNGNKLT-DIKPLA-NLKNLGWLFLDENKVK--DLSSLKDL 111

Query: 354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN 413
             L  L L  N IS  I   L +L  L  + + NN +       L +L  L  L LE N 
Sbjct: 112 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ 167

Query: 414 ISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSYNRFSGRIPNWIDKLSH 472
           IS  +        L  ++LS+N I   L  + G   L  L+L       +  N    L  
Sbjct: 168 IS-DIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 473 LSYLILANNNL 483
            + +   + +L
Sbjct: 226 PNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 45/239 (18%)

Query: 29  LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELH 88
              F       L      +    +   L S+  +   N  +      QG+  L ++ +L 
Sbjct: 20  DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLF 74

Query: 89  IGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPIS 148
           +  N +    P  L N+ +L  L +  N++      S L+ L  L+ L + +N       
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS---D 126

Query: 149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELR 208
                +  +L+  Y   N               ++ +I+             L    +L 
Sbjct: 127 INGLVHLPQLESLYLGNN---------------KITDIT------------VLSRLTKLD 159

Query: 209 YVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQ 267
            + L    +    P   L    +L+ L L+ N +S      +  LK L  +++      
Sbjct: 160 TLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 49/333 (14%), Positives = 106/333 (31%), Gaps = 81/333 (24%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
                        + ++   ++   +      + S+  +   ++ I    S   ++YL +
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPN 69

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR 192
           + +L ++ N+       +P  N   L   +  +N++        L+    L+        
Sbjct: 70  VTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKV------KDLSSLKDLKK------- 113

Query: 193 CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
                         L+ + L H  +  +     L +  +LE+L L NN ++      ++ 
Sbjct: 114 --------------LKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSR 154

Query: 253 LKQLTTIDVSKNFIQGHIPTGIGAF--LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQI 310
           L +L T+ +  N I     + I     L +L++  +S+N                    I
Sbjct: 155 LTKLDTLSLEDNQI-----SDIVPLAGLTKLQNLYLSKN-------------------HI 190

Query: 311 LALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI 370
             L   +           L NL  L+L + +       +  N  +   +  +D  +    
Sbjct: 191 SDLRALA----------GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-- 238

Query: 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF 403
                 +S+  D   PN     P   N     F
Sbjct: 239 ---PEIISDDGDYEKPNVKWHLPEFTNEVSFIF 268

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 359 LYLSDNHISGKIPKW-LGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISG 416
           L LS N++S    +W    L+NL  +++ +NHL   I +     +  L  LDL  N++  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 417 SLPS-CFSS-WLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWI----D 468
           +L    FS    L  + L  N I     + F D+  L  L LS N+ S R P  +    +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 469 KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS-HNN 506
           KL  L  L L++N L+      L  L       L  HNN
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQLTTIDV 261
               +DLSH NL      W       L +LLL++N L+      F     P+  L  +D+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDL 95

Query: 262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF----SLQILALSNN- 316
           S N +   +   + + L  LE   +  N +   +          F     LQ L LS N 
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVD------RNAFEDMAQLQKLYLSQNQ 147

Query: 317 --SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG--GLYLSDN 364
                  +      L  L+ L L +N+       +L         GLYL +N
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGD--IL 449
           +P +L   ++  +LDL  NN+S        + L  L  + LS N +     + F     L
Sbjct: 33  VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 450 VTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
             LDLS N     +  ++   L  L  L+L NN++          + QLQ + LS N +S
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 509 GTIP 512
              P
Sbjct: 150 -RFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
           +   +LD++ N ++   +      LT+L  L +S+N     IS E F     L+      
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSS 97

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N L   ++    +    L+ + L                 +L+ + LS   +   FP  L
Sbjct: 98  NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 226 LENN---KELETLLLANNSLSGFFQMPVNPLKQLTTIDVS 262
           +++     +L  L L++N L       +  L       + 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
           L        L    +L  L + +N++        V + +LR LD++SN +   +      
Sbjct: 54  LRAEWTPTRL---TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFS 109

Query: 129 YLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL 168
            L +LE L + NN   + +    F + ++L+K Y  +N++
Sbjct: 110 DLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 583 LDLSCNKLTGEIPFQI--GYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNMLQ 639
           LDLS N L+  +  +     L  + +L LSHN+L   I S  F  +  +  LDLS N L 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 640 GKIPTQ-LVELYALAIFSVAHNNLS 663
             +      +L AL +  + +N++ 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 583 LDLSCNKLTGEIP---FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
           LDLS N L   +    F    L  +  L L +N+++    + F  ++Q++ L LS N + 
Sbjct: 93  LDLSSNHLH-TLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 640 GKIPTQ----LVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY--DGNSLLC 688
            + P +      +L  L +  ++ N L       + +   + +N      N L C
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 45/211 (21%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFT---GGIPENLLNCSLLGGLYLS 362
             + L L +N L   + S++F  LT L  L L+ N+      GI + L N   L  L+++
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN---LETLWVT 93

Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS- 420
           DN +                           +P  +  +L  L  L L+ N +  SLP  
Sbjct: 94  DNKLQA-------------------------LPIGVFDQLVNLAELRLDRNQLK-SLPPR 127

Query: 421 CFSSWL--LTQVHLSRNKIEGQLEDVFGDILV---TLDLSYNRFSGRIPNWI-DKLSHLS 474
            F S L  LT + L  N+++   + VF D L     L L  N+   R+P    DKL+ L 
Sbjct: 128 VFDS-LTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLK-RVPEGAFDKLTELK 184

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505
            L L NN L+         L++L+++ L  N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC-KLNF 403
            IP +         L L  N +S    K    L+ L  + + +N L+  +PA +  +L  
Sbjct: 34  NIPADTKK------LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKN 86

Query: 404 LTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRF 459
           L  L +  N +  +LP      L  L ++ L RN+++     VF  +  L  L L YN  
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 460 SGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP 512
              +P  + DKL+ L  L L NN L+         L +L+ + L +N L   +P
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 48/219 (21%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
              + LD+ SN+++ ++ S     LT L  L +++N+ Q  +    F     L+  +   
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTD 94

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
           N+L       +L                 F           L  + L    L+   P  +
Sbjct: 95  NKL------QALPIGV-------------FDQL------VNLAELRLDRNQLK-SLPPRV 128

Query: 226 LENNKELETLLLANNSL----SGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRL 281
            ++  +L  L L  N L     G F    + L  L  + +  N ++  +P G    L  L
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVF----DKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 282 EHFNISRNVLNGSIPCSLHMTMGCF----SLQILALSNN 316
           +   +  N L   +P       G F     L++L L  N
Sbjct: 184 KTLKLDNNQLK-RVP------EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 32/186 (17%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
           L  L+ L++  N +          + +L  L +  N++   +       L +L ELR+  
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118

Query: 141 NQFQIPISFEP--FFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFP 198
           NQ +   S  P  F + +KL       N               +LQ++          F 
Sbjct: 119 NQLK---SLPPRVFDSLTKLTYLSLGYN---------------ELQSLP------KGVFD 154

Query: 199 RFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTT 258
           +       L+ + L +  L+   P    +   EL+TL L NN L    +   + L++L  
Sbjct: 155 KL----TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 259 IDVSKN 264
           + + +N
Sbjct: 210 LQLQEN 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 18/159 (11%)

Query: 14  FPNLETLELRDYHLE----LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYL 69
              ++     + +++    +  FTNL+ L L  +   I  L  +  LT ++ LS+    L
Sbjct: 40  LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRL 97

Query: 70  YGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRY 129
               +  G+     L  L +  N +  T    L+++ +L IL I +N++    S   L +
Sbjct: 98  ---KNLNGI-PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGF 148

Query: 130 LTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL 168
           L+ LE L +  N+     +        K+        + 
Sbjct: 149 LSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
            L N V   L     T     +    S +      +++I   +   +   +NL ++ + +
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG- 446
           N +     + L  L  L  L +  N +     +   S  L+++ L  N++    + +   
Sbjct: 73  NQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDNNELR-DTDSLIHL 127

Query: 447 DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506
             L  L +  N+    I   +  LS L  L L  N +       L  LK++  IDL+   
Sbjct: 128 KNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

Query: 507 LS 508
             
Sbjct: 184 CV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 46  HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNM 105
            I  +     L +    ++    +   +D     EL  +Q  +   +NI       +   
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFF 62

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
           T+L+ L ++ NQI+     SPL+ LT LEEL V+ N+    +        + L + +   
Sbjct: 63  TNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDN 115

Query: 166 NRLFVEIES-HSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNW 224
           N L  + +S   L     L+ +S+   +        L +  +L  +DL    +       
Sbjct: 116 NEL-RDTDSLIHLK---NLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNTGG-- 167

Query: 225 LLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN 264
            L   K++  + L           PV    +L   +  K+
Sbjct: 168 -LTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 348 ENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVL 407
                 +      L    ++  +      LS + +    N++++    A +     L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 408 DLEVNNIS-----GSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGR 462
            L  N IS       L        L ++ ++RN+++  L  +    L  L L  N     
Sbjct: 69  HLSHNQISDLSPLKDLTK------LEELSVNRNRLK-NLNGIPSACLSRLFLDNNELR-D 120

Query: 463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
             + +  L +L  L + NN L+  V   L  L +L+++DL  N ++
Sbjct: 121 TDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 17/207 (8%)

Query: 278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQL 337
           L      N+ +  +   +     ++     +Q     N+++Q  +       TNL  L L
Sbjct: 18  LANAVKQNLGKQSVT-DLVSQKELS----GVQNFNGDNSNIQ-SLAGMQ-FFTNLKELHL 70

Query: 338 DANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPAN 397
             NQ +      L + + L  L ++ N +   +       + L  + + NN L      +
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDT--DS 123

Query: 398 LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG-DILVTLDLSY 456
           L  L  L +L +  N +  S+        L  + L  N+I      +     +  +DL+ 
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTG 181

Query: 457 NRFSGRIPNWIDKLSHLSYLILANNNL 483
            +       +  +L   + +   +   
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
            ++  +  + N++       ++    L+ L L++N +S     P+  L +L  + V++N 
Sbjct: 42  GVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNR 96

Query: 266 IQGHIPTGIGAF-LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS 324
           +       +       L    +  N L           +   +L+IL++ NN L+     
Sbjct: 97  L-----KNLNGIPSACLSRLFLDNNELR-----DTDSLIHLKNLEILSIRNNKLKS--IV 144

Query: 325 RSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDII 384
               L+ L  L L  N+ T      L     +  + L+      +  K+   L     + 
Sbjct: 145 MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 385 MPNNHLEGPI 394
            P+     P 
Sbjct: 203 DPDGRWISPY 212

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 38/216 (17%), Positives = 78/216 (36%), Gaps = 34/216 (15%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLL-NCSLLGGLYLSDN 364
           S Q L L    L+  I S +F NL N+  + +  +     +  +   N S +  + + + 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 365 -HISGKIPKWLGNLSNLVDIIMPNNHLEG-PIPANLCKLNFLTVLDLEVNNISGSLPSCF 422
            +++   P  L  L  L  + + N  L+  P    +   +   +L++  N    S+P   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP--- 147

Query: 423 SSWLLTQVHLSRNKIEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDKLSHLSYLILA 479
                               + F  +    +TL L  N F+  +  +    + L  + L 
Sbjct: 148 -------------------VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 480 NNNLEGEVPVQLC--LLKQLQLIDLSHNNLSGTIPS 513
            N     +       +     L+D+S  +++  +PS
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 15/184 (8%)

Query: 205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSL-----SGFFQMPVNPLKQLTTI 259
             +  + +S      +  +    N  ++  + + N            +     L  L  +
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK----ELPLLKFL 110

Query: 260 DVSKNFIQGHIPTGIGAF-LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSL 318
            +    ++   P     +         I+ N    SIP +    + C     L L NN  
Sbjct: 111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGF 168

Query: 319 QGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLN--CSLLGGLYLSDNHISGKIPKWLGN 376
              +   +FN T L  + L+ N++   I ++      S    L +S   ++    K L +
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

Query: 377 LSNL 380
           L  L
Sbjct: 228 LKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 46/261 (17%)

Query: 231 ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNV 290
           + E   +    +     +P +      T+ + +  ++  IP+   + LP +    +S + 
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPS----TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID- 65

Query: 291 LNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL 350
                            + +       L+ H F    NL+ +  +++   +    I  + 
Sbjct: 66  -----------------VTL-----QQLESHSFY---NLSKVTHIEIRNTRNLTYIDPDA 100

Query: 351 L-NCSLLGGLYLSDNHISGKIP--KWLGNLSNLVDIIMPNNHLEGPIPANLCK--LNFLT 405
           L    LL  L + +  +    P    + +      + + +N     IP N  +   N   
Sbjct: 101 LKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 406 VLDLEVNNISGSLPSC-FSSWLLTQVHLSRNK-IEGQLEDVFGDI---LVTLDLSYNRFS 460
            L L  N  + S+    F+   L  V+L++NK +    +D FG +      LD+S    +
Sbjct: 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 461 GRIPNWIDKLSHLSYLILANN 481
             +P+    L HL  LI  N 
Sbjct: 219 -ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 27/210 (12%), Positives = 60/210 (28%), Gaps = 33/210 (15%)

Query: 81  LVHLQELHIGYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
           L ++  +++  +     L      N++ +  ++I + +    I    L+ L  L+ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 140 NNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPR 199
           N   ++       ++           N     I  ++                       
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA----------------------- 150

Query: 200 FLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQ 255
           F    +E   + L +         +     K     L  N  L+      F         
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG---GVYSG 206

Query: 256 LTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
            + +DVS+  +   +P+     L  L   N
Sbjct: 207 PSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 71/464 (15%), Positives = 142/464 (30%), Gaps = 86/464 (18%)

Query: 57  TSVKHLSMRNCYLYGTSDFQGLCELV-HLQELHIGYNNIGGT----LPWCLVNMTSLRIL 111
             ++ L ++   L   + +  L  L+   Q + +    +       +   L    +L  L
Sbjct: 3   LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 112 DIASNQITGN----ISSSPLRYLTSLEELRVSNNQFQ---IPISFEPFFNHSKLKKFYGQ 164
           ++ SN++       +          +++L + N         +          L++ +  
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 165 KNRL----FVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGE 220
            N L       +    L P+ +L+ + L  C         L                   
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL-----------------AS 164

Query: 221 FPNWLLENNKELETLLLANNSLSG-----FFQMPVNPLKQLTTIDVSKNFIQGHIPTGIG 275
               +L    + + L ++NN ++        Q   +   QL  + +    +       + 
Sbjct: 165 ----VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 276 AFL---PRLEHFNISRNVL--NGSIPCSLHMTMGCFSLQILALSNNSLQ----GHIFSRS 326
             +     L    +  N L   G       +      L+ L +    +     G +    
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 327 FNLTNLVTLQLDANQFTG----GIPENLL--NCSLLGGLYLSDNHISGK----IPKWLGN 376
               +L  L L  N+        + E LL   C L   L++     +          L  
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE-SLWVKSCSFTAACCSHFSSVLAQ 339

Query: 377 LSNLVDIIMPNNHLEGPIPANLCKL-----NFLTVLDLEVNNISG--------SLPSCFS 423
              L+++ + NN LE      LC+      + L VL L   ++S         +L +  S
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 424 SWLLTQVHLSRNKI--EG--QLEDVFGD---ILVTLDLSYNRFS 460
              L ++ LS N +   G  QL +       +L  L L    +S
Sbjct: 400 ---LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 59/349 (16%), Positives = 106/349 (30%), Gaps = 72/349 (20%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS-----GFFQMPVNPLKQLTTID 260
           +++ +D+    L       LL   ++ + + L +  L+           +     L  ++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELN 62

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ- 319
           +  N +      G+   L  L+  +                      +Q L+L N  L  
Sbjct: 63  LRSNELG---DVGVHCVLQGLQTPS--------------------CKIQKLSLQNCCLTG 99

Query: 320 ---GHIFSRSFNLTNLVTLQLDANQFTGG----IPENLL-NCSLLGGLYLSDNHISGK-- 369
              G + S    L  L  L L  N         + E LL     L  L L    +S    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 370 --IPKWLGNLSNLVDIIMPNNHLEGPIPANLCKL-----NFLTVLDLEVNNISGSLPSCF 422
             +   L    +  ++ + NN +       LC+        L  L LE   ++       
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 423 SSWL-----LTQVHLSRNKI---------EGQLEDVFGDILVTLDLSYNRFSGR----IP 464
              +     L ++ L  NK+          G L       L TL +     + +    + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR--LRTLWIWECGITAKGCGDLC 277

Query: 465 NWIDKLSHLSYLILANNNLEGEVPVQLCLL-----KQLQLIDLSHNNLS 508
             +     L  L LA N L  E    LC        QL+ + +   + +
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 7e-11
 Identities = 85/459 (18%), Positives = 146/459 (31%), Gaps = 77/459 (16%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFF----NHSKLKKF 161
             ++ LDI   +++    +  L  L   + +R+ +         +        +  L + 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 162 YGQKNRL----FVEIESHSLTPKFQLQNISLSGCR----CDFTFPRFLYYQHELRYVDLS 213
             + N L       +     TP  ++Q +SL  C             L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 214 HMNLRGE----FPNWLLENNKELETLLLANNSLS-----GFFQMPVNPLKQLTTIDVSKN 264
              L           LL+    LE L L   SLS         + +        + VS N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNN 180

Query: 265 FIQG----HIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQ 319
            I       +  G+     +LE   +    +       L  +     SL+ LAL +N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 320 G---HIFSRSFNLTN--LVTLQLDANQFT----GGIPENLLNCSLLGGLYLSDNHISGKI 370
                         +  L TL +     T    G +   L     L  L L+ N +  + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL---- 426
            + L                   +    C+   L  L ++  + + +  S FSS L    
Sbjct: 301 ARLLCET----------------LLEPGCQ---LESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 427 -LTQVHLSRNKIEG----QLEDVFGDI---LVTLDLSYNRFS----GRIPNWIDKLSHLS 474
            L ++ +S N++E     +L    G     L  L L+    S      +   +     L 
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 475 YLILANNNLEGEVPVQLC-LLKQ----LQLIDLSHNNLS 508
            L L+NN L     +QL   ++Q    L+ + L     S
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 4e-09
 Identities = 74/391 (18%), Positives = 133/391 (34%), Gaps = 73/391 (18%)

Query: 3   VSSLLQSLWTPFPNLETLELRDYHLE----------LLNFTNLEVLILDGSALHIRFLQS 52
           V  +LQ L TP   ++ L L++  L           L     L+ L L  + L    LQ 
Sbjct: 73  VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132

Query: 53  IAVL-----TSVKHLSMRNCYLYGTSDFQGLCELV----HLQELHIGYNNIGGT----LP 99
           +          ++ L +  C L   +  + L  ++      +EL +  N+I       L 
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

Query: 100 WCL-VNMTSLRILDIASNQIT----GNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFN 154
             L  +   L  L + S  +T     ++    +    SL EL + +N+            
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLG---------- 240

Query: 155 HSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR----CDFTFPRFLYYQHELRYV 210
                      +    E+    L P  +L+ + +  C           R L  +  L+ +
Sbjct: 241 -----------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 211 DLSHMNLRGE----FPNWLLENNKELETLLLANNSLSGFFQMPVNPL----KQLTTIDVS 262
            L+   L  E        LLE   +LE+L + + S +       + +    + L  + +S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 263 KNFIQG----HIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNS 317
            N ++      +  G+G     L    ++   ++ S   SL    +   SL+ L LSNN 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 318 LQ---GHIFSRSF--NLTNLVTLQLDANQFT 343
           L          S       L  L L    ++
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 13/168 (7%)

Query: 7   LQSLWTPFPNLETLELRD------YHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVK 60
           L ++      L+ L            L+ ++      L    S   +           V+
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 61  HLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITG 120
            L + +  L   +    L +L+ +  L + +N +   LP  L  +  L +L  + N +  
Sbjct: 445 VLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499

Query: 121 NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRL 168
             +   +  L  L+EL + NN+ Q   + +P  +  +L     Q N L
Sbjct: 500 --NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 50/321 (15%), Positives = 92/321 (28%), Gaps = 38/321 (11%)

Query: 221 FPNWLLENNKELET-----LLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIG 275
           +  WLL   +  +      +      LS  F  P+    ++ T+ +  +     +     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 276 AFLPRLEHFNISRNVLNGSIP-CSLHMTMGCFSLQILALSNNSLQGHIFSRSFN---LTN 331
               R  H  +              H     ++          L+        +      
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI-------------PKWLGNLS 378
           L   +L   + T  +   L +C  L  L   +      I              + L   S
Sbjct: 351 LFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 379 NLVDII--------MPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV 430
            L  +            +           +   + VL L   +++  L       L+T +
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHL 468

Query: 431 HLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG-EV 487
            LS N++   L      +  L  L  S N     +   +  L  L  L+L NN L+    
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525

Query: 488 PVQLCLLKQLQLIDLSHNNLS 508
              L    +L L++L  N+L 
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 6e-09
 Identities = 47/332 (14%), Positives = 106/332 (31%), Gaps = 20/332 (6%)

Query: 146 PISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQH 205
            +      +  +          L V     +L        +S+     D        +  
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
           +L    L+    +  F      ++ + E +LL +              +QL   ++S   
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD--SATDEQLFRCELSVEK 360

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR 325
                          LE     + +   +  C L + +   +L  L     +LQ     +
Sbjct: 361 ST--------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 326 SFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIM 385
           + +      L    ++F        +  + +  L+L+   ++  +   L  L  +  + +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDL 470

Query: 386 PNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDV- 444
            +N L   +P  L  L  L VL    N +  ++    +   L ++ L  N+++ Q   + 
Sbjct: 471 SHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQ-QSAAIQ 527

Query: 445 -FGDI--LVTLDLSYNRFSGRIPNWIDKLSHL 473
                  LV L+L  N    +     ++L+ +
Sbjct: 528 PLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 44/245 (17%), Positives = 72/245 (29%), Gaps = 17/245 (6%)

Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLIL 478
                 WL      S N    Q                     R   W    +    L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 479 ANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGA 538
              ++E    +Q  L    +L +L   N    +   L   AL    Y+            
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-- 411

Query: 539 SSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQI 598
                 +AV P  ++ +    S      +        +      L L+   LT  +   +
Sbjct: 412 ------KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV----LHLAHKDLT-VLCH-L 459

Query: 599 GYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVA 658
             L ++  L+LSHN L   +P   + L  +E L  S N L+  +   +  L  L    + 
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLC 516

Query: 659 HNNLS 663
           +N L 
Sbjct: 517 NNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 25  YHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHL 84
               +L     +V +L  +   +  L  +  L  V HL + +  L   +    L  L  L
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCL 488

Query: 85  QELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           + L    N +   +   + N+  L+ L + +N++  + +  PL     L  L +  N   
Sbjct: 489 EVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 27  LELLNFTNLEVLILDGSAL-HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQ 85
           L     ++++ L+LD S     +          ++ LS  N  L   +    L +L  L+
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLK 67

Query: 86  ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
           +L +  N + G L        +L  L+++ N+I    +  PL+ L +L+ L + N 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 307 SLQILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
            ++ L L N+    G +   +     L  L       T     NL   + L  L LSDN 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNR 75

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVLDLEVNNIS 415
           +SG +        NL  + +  N ++       L KL  L  LDL    ++
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE 486
           L     +  K+EG  ++   + L  L       +  I N + KL+ L  L L++N + G 
Sbjct: 24  LDNSRSNEGKLEGLTDEF--EELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGG 79

Query: 487 VPVQLCLLKQLQLIDLSHNNLS 508
           + V       L  ++LS N + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 27  LELLNFTNLEVLILDGSALHI-RFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQ 85
           L       +  L+LD    +  +     A   +++ LS+ N  L        L +L  L+
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLK 74

Query: 86  ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
           +L +  N I G L      + +L  L+++ N++    +  PL+ L  L+ L + N 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 307 SLQILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH 365
           +++ L L N     G I   +    NL  L L           NL     L  L LS+N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENR 82

Query: 366 ISGKIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVLDLEVNNIS 415
           I G +      L NL  + +  N L+       L KL  L  LDL    ++
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE 486
           L     +  KIEG   +     L  L L        + N + KL  L  L L+ N + G 
Sbjct: 31  LDNCKSNDGKIEGLTAEF--VNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86

Query: 487 VPVQLCLLKQLQLIDLSHNNLS 508
           + +    L  L  ++LS N L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 41/349 (11%), Positives = 115/349 (32%), Gaps = 53/349 (15%)

Query: 4   SSLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIA-VLTSVKHL 62
           +    ++   FP + ++EL+       +F +  ++          ++++++   T ++ +
Sbjct: 55  AVSPATVIRRFPKVRSVELKG----KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 63  SMRNCYLYGTSDFQGLCELV----HLQELHIGY-NNIGGTLPWCLV-NMTSLRILDIASN 116
            ++   +   +D   L  +     + + L +             +     +L+ LD+  +
Sbjct: 111 RLKRMVV---TD-DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 117 QITGNISSSPLRYL----TSLEELRVSNNQFQI-PISFEPFFNHSKLKKFYGQKNRLFVE 171
            +  ++S   L +     TSL  L +S    ++   + E                     
Sbjct: 167 DVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP-------------- 211

Query: 172 IESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNW-----LL 226
                      L+++ L+           L    +L  +             +      L
Sbjct: 212 ----------NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI 286
              KEL  L    +++  +     +   +LTT+++S   +Q +    +    P+L+   +
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 287 SRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTL 335
              + +  +     +   C  L+ L +  +       + +     LV++
Sbjct: 322 LDYIEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)

Query: 27  LELLNFTNLEVLILDGSALHIRFL-QSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQ 85
            + +  T  E + L G    I  +  +++ L + KHL++    +        L  + +L+
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI---EKISSLSGMENLR 73

Query: 86  ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQI 145
            L +G N I   +        +L  L I+ NQI    S S +  L +L  L +SNN+   
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITN 129

Query: 146 PISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP 179
               +      KL+      N L+ + + ++ T 
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 21  ELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCE 80
            +      L      + L L  +  +I  + S++ + +++ LS+    +    +   + +
Sbjct: 36  PIEKMDATLSTLKACKHLALSTN--NIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 93

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
              L+EL I YN I       +  + +LR+L +++N+IT       L  L  LE+L ++ 
Sbjct: 94  --TLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 141 NQFQ 144
           N   
Sbjct: 150 NPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 19/118 (16%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
            L     L L  N     I  +L     L  L L  N I  KI         L ++ +  
Sbjct: 46  TLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNIS--------GSLPSCFSSWLLTQVHLSRNKI 437
           N +     + + KL  L VL +  N I+         +L        L  + L+ N +
Sbjct: 103 NQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK------LEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 37/134 (27%)

Query: 380 LVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG 439
            V++      +E  + A L  L     L L  NNI                     KI  
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE--------------------KISS 65

Query: 440 --QLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN---LEGEVPVQLCLL 494
              +E+     L  L L  N    +I N       L  L ++ N    L G     +  L
Sbjct: 66  LSGMEN-----LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKL 114

Query: 495 KQLQLIDLSHNNLS 508
             L+++ +S+N ++
Sbjct: 115 VNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 204 QHELRYVDLSHMNLRGEFPNW-----LLENNKELETLLLANNSLSGFFQMPVNPLKQLTT 258
           +  +   +   + L G  P        L   K  + L L+ N++       ++ ++ L  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRI 74

Query: 259 IDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSL 318
           + + +N I+  I   + A    LE   IS N +      SL       +L++L +SNN +
Sbjct: 75  LSLGRNLIK-KI-ENLDAVADTLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKI 127

Query: 319 QG-HIFSRSFNLTNLVTLQLDANQFTGGIPEN 349
                  +   L  L  L L  N       EN
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 28  ELLNFTNLEVLILDGSALH-IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQE 86
           +  N      L L G  +  I  L +   L     +   +  +       G   L  L+ 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEI---RKLDGFPLLRRLKT 68

Query: 87  LHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNN 141
           L +  N I          +  L  L + +N +       PL  L SL  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 406 VLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE--DVFGDILVTLDLSYNRFSGRI 463
           ++ L    I        ++    ++ L   KI   +E      D    +D S N    ++
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 464 PNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
             +   L  L  L++ NN +          L  L  + L++N+L 
Sbjct: 58  DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 11/117 (9%)

Query: 46  HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCE-LVHLQELHIGYNNIG--GTLPWCL 102
            I            + L +R   +      + L   L     +    N I      P   
Sbjct: 8   LIEQAAQYTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKLDGFP--- 61

Query: 103 VNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLK 159
             +  L+ L + +N+I   I     + L  L EL ++NN        +P  +   L 
Sbjct: 62  -LLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 42/165 (25%)

Query: 348 ENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVL 407
               N      L L    I   I      L     I   +N +   +      L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 408 DLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465
            +  N I   +       L  LT++ L+ N +  +L D+                    +
Sbjct: 70  LVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDL--------------------D 107

Query: 466 WIDKLSHLSYLILANNNLEGEVPVQ---------LCLLKQLQLID 501
            +  L  L+YL +  N      PV          +  + Q++++D
Sbjct: 108 PLASLKSLTYLCILRN------PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNF 265
             R +DL    +       L     + + +  ++N +      P   L++L T+ V+ N 
Sbjct: 20  RDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNR 75

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN 316
           I   I  G+   LP L    ++ N L       L       SL  L +  N
Sbjct: 76  IC-RIGEGLDQALPDLTELILTNNSL--VELGDLDPLASLKSLTYLCILRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 72  TSDFQGLCELVHLQELHIGYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYL 130
                 L    +L EL+I        L    L  +  LR L I  + +   ++     + 
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 131 TSLEELRVSNNQFQ-IPISFEPFFNHSKLKKFYGQKNRL 168
             L  L +S N  + +            L++     N L
Sbjct: 80  PRLSRLNLSFNALESLS---WKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 25/143 (17%), Positives = 34/143 (23%), Gaps = 41/143 (28%)

Query: 189 SGCRCD------------FTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
             C                     L     L  + + +           L    EL  L 
Sbjct: 3   DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT 62

Query: 237 LANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIP 296
           +  + L                           +      F PRL   N+S N L  S+ 
Sbjct: 63  IVKSGLR-------------------------FVAPDAFHFTPRLSRLNLSFNALE-SLS 96

Query: 297 CSLHMTMGCFSLQILALSNNSLQ 319
                 +   SLQ L LS N L 
Sbjct: 97  WKTVQGL---SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 346 IPENLLNCSLLGGLYLSDNHISGKIPKW-LGNLSNLVDIIMPNNHLEGPIPAN-LCKLNF 403
              +L     L  LY+ +      +    L  L  L ++ +  + L   +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN 435
           L+ L+L  N +            L ++ LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPS-CFSS-WLLTQVHLSRNKIEGQLEDVFGDI--L 449
              +L     LT L +E       L          L  + + ++ +     D F     L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL 483
             L+LS+N         +  LS L  L+L+ N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 584 DLSC-NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNMLQGK 641
            L C      +    +     +  L + +   +  +       L ++ +L +  + L+  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
            P        L+  +++ N L   +  +  Q  +  E    GN L C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 449 LVTLDLSYNRFSGRIPNW-IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
           L  L +   +    +    +  L  L  L +  + L    P       +L  ++LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 508 SGTIP 512
             ++ 
Sbjct: 93  E-SLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 583 LDLSCNKLTGEIP-FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK 641
           L +   +    +    +  L  +R L +  + L    P  F    ++  L+LS+N L+  
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 642 IPTQLVELYALAIFSVAHNNL 662
           +  + V+  +L    ++ N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLC-KLNF 403
            +PE +        + L  N I    P        L  I + NN +   +  +    L  
Sbjct: 29  NLPETITE------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 404 LTVLDLEVNNISGSLPS-CFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNR 458
           L  L L  N I+  LP   F   L  L  + L+ NKI     D F D+  L  L L  N+
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 459 FSGRIPNWIDKLSHLSYLILANN 481
                      L  +  + LA N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 14/137 (10%)

Query: 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
             + L  N++        +P K+L  ID+S N I   +       L  L    +  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 293 GSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIP 347
             +P         F    SLQ+L L+ N +   +   +F +L NL  L L  N+      
Sbjct: 94  -ELP------KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 348 ENLLNCSLLGGLYLSDN 364
                   +  ++L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 32/143 (22%)

Query: 230 KELETLLLANNSLS----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
           K+L  + L+NN +S      FQ     L+ L ++ +  N I   +P  +   L  L+   
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQ----GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 286 ISRNVLNGSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDAN 340
           ++ N +N  +       +  F    +L +L+L +N LQ  I   +F  L  + T+ L  N
Sbjct: 111 LNANKIN-CLR------VDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

Query: 341 QFTGGIPENLLNCSLLGGLYLSD 363
            F         +C L    +L+D
Sbjct: 163 PFI-------CDCHL---KWLAD 175

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSSW-LLTQVHLSRNKIEGQLEDVFGDI--LV 450
           +P  +      T + LE N I    P  FS +  L ++ LS N+I     D F  +  L 
Sbjct: 30  LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 451 TLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQL-CLLKQLQLIDLSHNNLS 508
           +L L  N+ +  +P  + + L  L  L+L  N +   + V     L  L L+ L  N L 
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 509 GTIP 512
            TI 
Sbjct: 142 -TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 307 SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSL--LGGLYLSD 363
           ++  + L  N+++  I   +F     L  + L  NQ +  +  +     L  L  L L  
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ-GLRSLNSLVLYG 89

Query: 364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPSCF 422
           N I+         L +L  +++  N +   +  +    L+ L +L L  N +       F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 423 SSWL-LTQVHLSRN 435
           S    +  +HL++N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 81  LVHLQELHIGYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
           L  L  L +  N I   LP      + SL++L + +N+I   +     + L +L  L + 
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 140 NNQFQ 144
           +N+ Q
Sbjct: 137 DNKLQ 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 345 GIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNF 403
           GIP +         L L    ++         L+ L  + +  N L+  + A +   L  
Sbjct: 32  GIPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 404 LTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILV---TLDLSYNR 458
           L  L L  N ++ SLP      L  L +++L  N+++     VF D L     L L+ N+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQ 142

Query: 459 FSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN 506
               IP    DKL++L  L L+ N L+         L +LQ I L   N
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
           E L L +  L+         L +LT +++  N +Q  +  G+   L  L    ++ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 293 GSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGIP 347
            S+P      +G F     L  L L  N L+  + S  F  LT L  L+L+ NQ    IP
Sbjct: 97  -SLP------LGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIP 147

Query: 348 ENLLNC-SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
               +  + L  L LS N +          L  L  I +  N
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 54/332 (16%), Positives = 102/332 (30%), Gaps = 92/332 (27%)

Query: 226 LENNKELETLLLANNSLS-----GFFQMPVNPLKQLTTIDVSKNFI---QGHIPTGIGAF 277
           L  +  ++ ++L+ N++         +  +   K L   + S  F    +  IP  +   
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 278 L------PRLEHFNISRNVL--NGSIPCSLHMTMGCFSLQILALSNNSL----------- 318
           L      P+L    +S N        P    ++     L+ L L NN L           
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 319 --QGHIFSRSFNLTNLVTLQLDANQFTGG----IPENLLNCSLLGGLYLSDNHISGKIPK 372
             +  +  ++ N   L ++    N+   G      +   +  LL  + +  N I  +   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--- 202

Query: 373 WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNI--------SGSLPSCFSS 424
             G    L++ +     L               VLDL+ N          + +L S  + 
Sbjct: 203 --GIEHLLLEGLAYCQEL--------------KVLDLQDNTFTHLGSSALAIALKSWPN- 245

Query: 425 WLLTQVHLSRNKIEGQ--------LEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYL 476
             L ++ L+   +  +           +    L TL L YN          D +  L  +
Sbjct: 246 --LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL------DAVRTLKTV 297

Query: 477 ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
           I                   L  ++L+ N  S
Sbjct: 298 IDEKM-------------PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 41/258 (15%), Positives = 74/258 (28%), Gaps = 53/258 (20%)

Query: 303 MGCFSLQILALSNNSLQG----HIFSRSFNLTNLVTLQLDANQFTGG----IPENLLNCS 354
           M  FS++  +L  +++       +F+      ++  + L  N         + EN+ +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLE---------GPIPAN-----LCK 400
            L     SD        +    L  L+  ++    L          GP         L K
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 401 LNFLTVLDLEVNNIS--------GSLPSCFSSWL------LTQVHLSRNKIEGQ----LE 442
              L  L L  N +          +L     +        L  +   RN++E        
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 443 DVFGDI--LVTLDLSYNRF-----SGRIPNWIDKLSHLSYLILANNNLEGEVPVQ----- 490
             F     L T+ +  N          +   +     L  L L +N     +        
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIA 239

Query: 491 LCLLKQLQLIDLSHNNLS 508
           L     L+ + L+   LS
Sbjct: 240 LKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 51/340 (15%), Positives = 107/340 (31%), Gaps = 82/340 (24%)

Query: 58  SVKHLSMRNCYLYGTSDFQGLCELV----HLQELHIGYNNIGGT----LPWCLVNMTSLR 109
           S++  S++   +  T D + +  ++     ++E+ +  N IG      L   + +   L 
Sbjct: 5   SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 110 ILDIASNQITGNISSSP---------LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK 160
           I + +           P         L     L  +R+S+N F  P + EP         
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PTAQEPL-------- 114

Query: 161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCR-------------CDFTFPRFLYYQHEL 207
                           L+    L+++ L                  +    +       L
Sbjct: 115 -------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 208 RYVDLSHMNLRGEFPNWL---LENNKELETLLLANNSLS--GFFQMPVNPLK---QLTTI 259
           R +      L            ++++ L T+ +  N +   G   + +  L    +L  +
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 260 DVSKNFIQGHIPTGIGA--------FLPRLEHFNISRNVL--NGSIPCSLHMTMGCF-SL 308
           D+  N       T +G+          P L    ++  +L   G+       +      L
Sbjct: 222 DLQDNTF-----THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 309 QILALSNNSLQ---GHIFSRSF--NLTNLVTLQLDANQFT 343
           Q L L  N ++              + +L+ L+L+ N+F+
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 49/292 (16%), Positives = 83/292 (28%), Gaps = 55/292 (18%)

Query: 50  LQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELV----HLQELHIGYNNIGGTLPWC---- 101
              +    SVK + +    + GT   + L E +     L+         G          
Sbjct: 25  FAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 102 ------LVNMTSLRILDIASNQITGN----ISSSPLRYLTSLEELRVSNNQF-------- 143
                 L+    L  + ++ N         +    L   T LE L + NN          
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 144 ----QIPISFEPFFNHSKLKKFYGQKNRLFVE----IESHSLTPKFQLQNISLSGCR--- 192
               Q     +   N   L+     +NRL         + +      L  + +       
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRP 201

Query: 193 --CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL---LENNKELETLLLANNSLS--GF 245
              +      L Y  EL+ +DL          + L   L++   L  L L +  LS  G 
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 246 FQ----MPVNPLKQLTTIDVSKNFIQG----HIPTGIGAFLPRLEHFNISRN 289
                         L T+ +  N I+      + T I   +P L    ++ N
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 67/406 (16%), Positives = 113/406 (27%), Gaps = 110/406 (27%)

Query: 84  LQELHIGYNNIG--GTLPWC--LVNMTSLRILDIASNQITGN----ISSSPLRYLTSLEE 135
           ++   +  + I           L+   S++ + ++ N I       +S + +     LE 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEI 64

Query: 136 LRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF 195
              S+                          R+  EI          L+ +  +  +C  
Sbjct: 65  AEFSDIFT----------------------GRVKDEIPE-------ALRLLLQALLKC-- 93

Query: 196 TFPRFLYYQHELRYVDLSHMNLRGEFPNWL---LENNKELETLLLANNSLSGF-FQMPVN 251
                     +L  V LS           L   L  +  LE L L NN L          
Sbjct: 94  ---------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 252 PLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVL-NGSIPCSLHMTMGCFSLQI 310
            L++L     +KN              P L      RN L NGS+            L  
Sbjct: 145 ALQELAVNKKAKN-------------APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 311 LALSNNSLQ----GHIFSRSF-NLTNLVTLQLDANQFTG----GIPENLLNCSLLGGLYL 361
           + +  N ++     H+          L  L L  N FT      +   L +   L  L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 362 SDNHISGK----IPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGS 417
           +D  +S +    +      L N+                       L  L L+ N I   
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIG----------------------LQTLRLQYNEIELD 289

Query: 418 LPSCFSSWL------LTQVHLSRNKI--EGQLEDVFGDILVTLDLS 455
                 + +      L  + L+ N+   E  + D   ++  T    
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 335

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 23/146 (15%)

Query: 18  ETLELRDYHLELLNFTNLEVLIL------DGSALHIRFLQSIAVLTSVKHLSMRNCYLY- 70
             L+    + +  N   L  +I       +GS       ++      +  + M    +  
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA--KTFQSHRLLHTVKMVQNGIRP 201

Query: 71  -GTSDF--QGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDIASNQITGN-- 121
            G      +GL     L+ L +  N         L   L +  +LR L +    ++    
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 122 --ISSSPLRYL--TSLEELRVSNNQF 143
             +  +    L    L+ LR+  N+ 
Sbjct: 262 AAVVDA-FSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 37/176 (21%)

Query: 2   NVSSLLQSLWTPFPNLETLELRDYHLE----------LLNFTNLEVLILD---------- 41
            +  LLQ+L    P L T+ L D              L   T LE L L           
Sbjct: 82  ALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140

Query: 42  --GSAL-HIRFLQSIAVLTSVKHLSMRNCYLY--GTSDF-QGLCELVHLQELHIGYNNIG 95
               AL  +   +       ++ +      L      ++ +       L  + +  N I 
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200

Query: 96  -----GTLPWCLVNMTSLRILDIASNQITGN----ISSSPLRYLTSLEELRVSNNQ 142
                  L   L     L++LD+  N  T      ++ + L+   +L EL +++  
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL 255

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--L 449
           IP           L L  N  +    +     L  L +++ S NKI    E  F     +
Sbjct: 30  IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 450 VTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCL-------LKQLQLID 501
             + L+ NR    + + +   L  L  L+L +N +        C+       L  ++L+ 
Sbjct: 84  NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-------CVGNDSFIGLSSVRLLS 135

Query: 502 LSHNNLSGTIP 512
           L  N ++ T+ 
Sbjct: 136 LYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 32/162 (19%)

Query: 211 DLSHMNLRGEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQLTTIDVSKNFI 266
            L++          + +   +L  +  +NN ++    G F         +  I ++ N +
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----EGASGVNEILLTSNRL 93

Query: 267 QGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF----SLQILALSNNSLQGHI 322
           +  +   +   L  L+   +  N +   +          F    S+++L+L +N +   +
Sbjct: 94  EN-VQHKMFKGLESLKTLMLRSNRIT-CVG------NDSFIGLSSVRLLSLYDNQIT-TV 144

Query: 323 FSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD 363
              +F  L +L TL L AN F         NC L    +L +
Sbjct: 145 APGAFDTLHSLSTLNLLANPFN-------CNCYL---AWLGE 176

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 23/142 (16%)

Query: 233 ETLLLANNSLS-----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNIS 287
             L L NN  +     G F+     L QL  I+ S N I   I  G       +    ++
Sbjct: 35  AELRLNNNEFTVLEATGIFK----KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 288 RNVLNGSIPCSL--HMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTG 344
            N L  ++   +   +     SL+ L L +N +   + + SF  L+++  L L  NQ T 
Sbjct: 90  SNRLE-NVQHKMFKGLE----SLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT- 142

Query: 345 GIPENLLNCSL--LGGLYLSDN 364
            +     + +L  L  L L  N
Sbjct: 143 TVAPGAFD-TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL--LTQVHLSRNKIEGQLEDV 444
           N            KL  L  ++   N I+      F      + ++ L+ N++E     +
Sbjct: 42  NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTSNRLENVQHKM 100

Query: 445 FGDI--LVTLDLSYNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLCLLKQLQLID 501
           F  +  L TL L  NR +  + N     LS +  L L +N +    P     L  L  ++
Sbjct: 101 FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159

Query: 502 LSHN 505
           L  N
Sbjct: 160 LLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 33  TNLEVLILDGSAL-HIRFLQSIAVLTSVKHLSMRNCYLYGTSD--FQGLCELVHLQELHI 89
                L L+ +    +        L  ++ ++  N  +    +  F+G      + E+ +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA---SGVNEILL 88

Query: 90  GYNNIGGTLPW-CLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
             N +   +       + SL+ L + SN+IT  + +     L+S+  L + +NQ  
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 106/718 (14%), Positives = 218/718 (30%), Gaps = 199/718 (27%)

Query: 16  NLETLELRDYHLELLNFTNLEVLILDGSALHIR-FLQSIAVLTSVKHL------SMRNCY 68
           + ET E   Y  + +     +  + +     ++   +SI     + H+            
Sbjct: 8   DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTL----PWCLVNMTSLRILDIASNQITGNISS 124
           L+ T     L      ++  +    +   L     +    M+ ++      + +T     
Sbjct: 67  LFWT-----LLS----KQEEMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMT----- 109

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ 184
               Y+   + L  ++NQ      F  + N S+L+ +   +  L        L P    +
Sbjct: 110 --RMYIEQRDRLY-NDNQ-----VFAKY-NVSRLQPYLKLRQALL------ELRPA---K 151

Query: 185 NISLSG-------------CR-----CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
           N+ + G             C      C   F  F        +++L + N     P  +L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--------WLNLKNCNS----PETVL 199

Query: 227 ENNKELETLL--LANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF 284
           E    L+ LL  +  N  S         L+  +     +  ++               + 
Sbjct: 200 EM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK------------PYE 244

Query: 285 N---ISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDAN 340
           N   +  NV N           + C   +IL  +           S   T  ++L   + 
Sbjct: 245 NCLLVLLNVQNAKA---WNAFNLSC---KILLTTRFK--QVTDFLSAATTTHISLDHHSM 296

Query: 341 QFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK 400
             T   P+ +   SLL               K+L               L    P  +  
Sbjct: 297 TLT---PDEVK--SLLL--------------KYLD---------CRPQDL----PREVLT 324

Query: 401 LNFLTVLDLEVNNISGSL---PSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLS-- 455
            N    L +    I+ S+    + + +W     H++ +K+   +E    ++L   +    
Sbjct: 325 TNPR-RLSI----IAESIRDGLATWDNWK----HVNCDKLTTIIE-SSLNVLEPAEYRKM 374

Query: 456 YNRFS-----GRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT 510
           ++R S       IP     LS     ++  + ++ +V V +  L +  L++      + +
Sbjct: 375 FDRLSVFPPSAHIP--TILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSY 570
           IPS   +  +   N  +   +   +Y        + + P                    Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP---------------YLDQY 472

Query: 571 YYQGRILKIMFGLDLSCNKLTGEIP-FQIGYLNM------IRALNLSHNNLMGTIPSTFS 623
           +Y         G  L   +    +  F++ +L+       IR  + + N   G+I +T  
Sbjct: 473 FYS------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA-SGSILNTLQ 525

Query: 624 HLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY 681
            L   +     Y         +LV      +  +  N +  K  D + + A   E+  
Sbjct: 526 QLKFYK----PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-RIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 88/529 (16%), Positives = 157/529 (29%), Gaps = 186/529 (35%)

Query: 3   VSSLLQS----LWTPF------PNLETLELRDYHLELLN----FTNLEVLILDGSALHIR 48
           V  +L+     L +P       P++ T    +    L N    F    V  L        
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ------- 135

Query: 49  FLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMT-- 106
                       +L +R   L      + +  L+       G   + G+    +      
Sbjct: 136 -----------PYLKLRQA-LLELRPAKNV--LID------G---VLGSGKTWVALDVCL 172

Query: 107 SLRILDIASNQI----TGNISSSPLRYLTSLEELRV---------SNNQFQIPISFEPFF 153
           S ++      +I      N  +SP   L  L++L           S++   I +      
Sbjct: 173 SYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI- 230

Query: 154 NHSKLKKFYGQK---NRLFV--EIESHSLTPKFQLQ----------------------NI 186
             ++L++    K   N L V   +++      F L                       +I
Sbjct: 231 -QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 187 SLSGCRCDFT-------FPRFLYYQHELRYVDLSH---------MNLRGE--------FP 222
           SL       T         ++L    + R  DL           +++  E        + 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 223 NWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQ-------GHIPTGIG 275
           NW   N  +L T++      S         L  L   +  K F +        HIPT + 
Sbjct: 346 NWKHVNCDKLTTII----ESS---------LNVLEPAEYRKMFDRLSVFPPSAHIPTIL- 391

Query: 276 AFLPRL---EHFNISRNVLNG----------------SIPCSLHMTMGCFSLQILALSNN 316
             L  +      +    V+N                 SIP S+++ +        AL  +
Sbjct: 392 --LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHRS 448

Query: 317 SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNC------SLLGGLYLSDNHISGKI 370
            +  +   ++F+  +L+   LD   F   I  +L N       +L   ++L    +  KI
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 371 ----PKWLGN---LSNLVDI------IMPNNHLEGPIPANLCK--LNFL 404
                 W  +   L+ L  +      I  N+    P    L    L+FL
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDND----PKYERLVNAILDFL 552

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 51/337 (15%), Positives = 107/337 (31%), Gaps = 54/337 (16%)

Query: 225 LLENNKELETLLLANNSLS-----GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLP 279
                  + +L L+ N+L         Q   N    +T++++S N +       +   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 280 ----RLEHFNISRNVLN--GSIPCSLHMTMGCFSLQILALSNNSLQG----HIFS--RSF 327
                +   N+S N L+   S      +    F++ +L L  N               + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 328 NLTNLVTLQLDANQFTG----GIPENL--LNCSLLGGLYLSDNHISGKIPKWLGNL---- 377
              ++ +L L  N         + + L  +  ++   L L  N+++ K    L       
Sbjct: 137 P-ASITSLNLRGNDLGIKSSDELIQILAAIPANVN-SLNLRGNNLASKNCAELAKFLASI 194

Query: 378 -SNLVDIIMPNNHLEGPIPANLCKL-----NFLTVLDLEVNNISGSLPSCFSSWL----- 426
            +++  + +  N L     A L  +     N +  L+L +N + G               
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 427 LTQVHLSRNKIEGQLEDVFGDI---------LVTLDLSYNRFSG----RIPNWIDKLS-H 472
           L  V+L  + ++   ++    +         ++ +D +           I N I +LS  
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSG 509
                L N  L      Q  +       +L  +  + 
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 41/315 (13%), Positives = 90/315 (28%), Gaps = 49/315 (15%)

Query: 207 LRYVDLSHMNLRGE----FPNWLLENNKELETLLLANNSLS-----GFFQMPVNPLKQLT 257
           +  ++LS  +L  +        L      + +L L+ N LS        +        +T
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 258 TIDVSKNFIQG----HIPTGIGAFLPRLEHFNISRNVLN--GSIPCSLHMTMGCFSLQIL 311
            +D+  N                    +   N+  N L    S      +     ++  L
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 312 ALSNNSLQ----GHIFS--RSFNLTNLVTLQLDANQFT----GGIPENLLNC-SLLGGLY 360
            L  N+L       +     S    ++ +L L AN         +     +  + +  L 
Sbjct: 173 NLRGNNLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 361 LSDNHISGK----IPKWLGNLSNLVDIIMPNNHLEGPIPAN-------LCKLNFLTVLDL 409
           L  N + G     +     +L +L  + +  + ++                +  + ++D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 410 EVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDK 469
               I  S     S+ L+ ++    +             L+   L + +        ++ 
Sbjct: 292 NGKEIHPSHSIPISN-LIRELSGKADVPS----------LLNQCLIFAQKHQTNIEDLNI 340

Query: 470 LSHLSYLILANNNLE 484
              L   I     L 
Sbjct: 341 PDELRESIQTCKPLL 355

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 24/191 (12%)

Query: 304 GCF-SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS 362
             F       L   S+          L ++  +  + +          L    +  L L 
Sbjct: 16  DAFAETIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVRYLALG 71

Query: 363 DNHISGKIPKWLG---NLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSL 418
            N +       +     L+NL  +I+  N L+  +P  +  KL  L  L L  N +  SL
Sbjct: 72  GNKLHD-----ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SL 124

Query: 419 PSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILV---TLDLSYNRFSGRIPNWI-DKLSH 472
           P      L  LT ++L+ N+++   + VF D L     LDLSYN+    +P  + DKL+ 
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVF-DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182

Query: 473 LSYLILANNNL 483
           L  L L  N L
Sbjct: 183 LKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 36/173 (20%)

Query: 231 ELETLLLANNSLS--GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR 288
            +  L L  N L            L  LT + ++ N +Q  +P G+   L  L+   +  
Sbjct: 64  NVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 289 NVLNGSIPCSLHMTMGCF----SLQILALSNN---SLQGHIFSRSFNLTNLVTLQLDANQ 341
           N L  S+P       G F    +L  L L++N   SL   +F +   LTNL  L L  NQ
Sbjct: 119 NQLQ-SLP------DGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---LTNLTELDLSYNQ 168

Query: 342 FT---GGIPENLLNCSLLGGLYLSDNHISGKIPKWLG---NLSNLVDIIMPNN 388
                 G+ + L     L  L L  N +   +P   G    L++L  I + +N
Sbjct: 169 LQSLPEGVFDKLTQ---LKDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 53/379 (13%), Positives = 112/379 (29%), Gaps = 50/379 (13%)

Query: 7   LQSLWTPFPNLETLELR--------DYHLELL--NFTNLEVLIL---DGSALHIRFLQSI 53
           L S+ T    ++TL +            L  L  + T+LEVL     + + +  + L++I
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 54  AV-LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD 112
           A    S+  + + +  +             +L+E   G  N    +P   +N+   R L 
Sbjct: 216 ARNCRSLVSVKVGDFEI--LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 113 IAS-NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK---NRL 168
               + +  N       +   + +L +     +             L+    +    +R 
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 169 FVEIESHSLTPKFQLQNISLSGCR------------CDFTFPRFLYYQHELRYVDLSHMN 216
              +  +      QL+ + +                             EL Y+ +   +
Sbjct: 334 LEVLAQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389

Query: 217 LRGEFPNWLLENNKELETLLLAN---------NSLSGFFQMPVNPLKQLTTIDVSKN--F 265
           +  E    +    K L    L             L    +  +   K+L           
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGH-IFS 324
           +     + IG + P +    +       S    +  + GC +LQ L +         I +
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYV--GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 325 RSFNLTNLVTLQLDANQFT 343
               L +L  L +   + +
Sbjct: 508 AVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 42/385 (10%), Positives = 98/385 (25%), Gaps = 66/385 (17%)

Query: 7   LQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALH---------IRFLQSIAVLT 57
           L  L     +LE L         ++  +LE +  +  +L          +  +       
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 58  SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIG-GTLPWCLVNMTSLRILDIASN 116
           +++     +         + +  +   +   +G + +G   +P        +R LD+   
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHS 176
            +      + ++   +LE L   N         E    + K                   
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGD--RGLEVLAQYCK------------------- 342

Query: 177 LTPKFQLQNISLSGCR------------CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNW 224
                QL+ + +                             EL Y+ +   ++  E    
Sbjct: 343 -----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397

Query: 225 LLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF 284
           +    K L    L                  L   +   +    +    +     +L  F
Sbjct: 398 IGTYLKNLCDFRLVL----------------LDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGH-IFSRSFNLTNLVTLQLDANQFT 343
                    +     ++     +++ + L         +   S    NL  L++    F+
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 344 -GGIPENLLNCSLLGGLYLSDNHIS 367
              I   +     L  L++     S
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 13/101 (12%)

Query: 57  TSVKHLSMRNCYLYGTSDFQGLCELV----HLQELHIGYNNIGGTLPWCLVNM----TSL 108
             ++ +++ N         +   E +    ++++  I        + + L  M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 109 RILDIASNQITGN----ISSSPLRYLTSLEELRVSNNQFQI 145
           + L++ SN I+G+    +  + L+  TSL ELR+ N    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 15/112 (13%)

Query: 14  FPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLY--G 71
            PNLE L L         +  +E    DG     R L S     ++K L + +       
Sbjct: 218 LPNLEKLVL---------YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268

Query: 72  TSDFQGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDIASNQIT 119
              F     L  L+ + I    +       L   +  +  L+ +++  N ++
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 5   SLLQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFL-----QSIA--VLT 57
           ++L  L  P  NL+ LE      + L     +VL       H+ F      Q  +  VL+
Sbjct: 13  AVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLS 72

Query: 58  SVKHLSMRNCYLYGTSDFQGLCELVH-----LQELHIGYNNIG--GTLPWCLVNMTSLRI 110
           S++ L++    +        +  ++      L E+++    +   G      V     R 
Sbjct: 73  SLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-LRARK 130

Query: 111 LDIASNQITGN----ISSSPLRYLTSLEELRVSNNQFQ 144
           L +  N +       +    L     +  LR+SNN   
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 25/137 (18%)

Query: 233 ETLLLANNSLSGFFQMPV-NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVL 291
             LLL +N L       +   L  L  +++ +N + G I          ++   +  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 292 NGSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSF-NLTNLVTLQLDANQFTGGI 346
              I          F     L+ L L +N +   +   SF +L +L +L L +N F    
Sbjct: 91  K-EIS------NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN--- 139

Query: 347 PENLLNCSLLGGLYLSD 363
                NC L    + ++
Sbjct: 140 ----CNCHL---AWFAE 149

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFSSWL-LTQVHLSRNKIEGQLEDV 444
           +N +    P     L  L  L L  N +  +LP   F S   LT + L  N++      V
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107

Query: 445 FGDILV---TLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLID 501
           F D LV    L +  N+ +  +P  I++L+HL++L L  N L+         L  L    
Sbjct: 108 F-DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165

Query: 502 LSHN 505
           L  N
Sbjct: 166 LFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 35/159 (22%)

Query: 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
           + L L +N ++       + L  L  + +  N +   +P G+         F+       
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGV---------FD------- 85

Query: 293 GSIPCSLHMTMGCFSLQILALSNN---SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEN 349
                   +T     L +L L  N    L   +F R   L +L  L +  N+ T  +P  
Sbjct: 86  -------SLT----QLTVLDLGTNQLTVLPSAVFDR---LVHLKELFMCCNKLT-ELPRG 130

Query: 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN 388
           +   + L  L L  N +          LS+L    +  N
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 45/127 (35%)

Query: 394 IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL-LTQVHLSRNKIEGQLEDVFGDILVTL 452
           IP ++      T L L+ N  +  +P   S++  LT + LS N+I       F       
Sbjct: 29  IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF------- 74

Query: 453 DLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL-------LKQLQLIDLSHN 505
                            ++ L  LIL+ N L        C+       LK L+L+ L  N
Sbjct: 75  ---------------SNMTQLLTLILSYNRLR-------CIPPRTFDGLKSLRLLSLHGN 112

Query: 506 NLSGTIP 512
           ++S  +P
Sbjct: 113 DIS-VVP 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 33/167 (19%)

Query: 233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN 292
             L L  NSL        + L  LT + +  N +Q  +P G+   L  L + N+S N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 293 GSIPCSLHMTMGCF----SLQILALSNNSLQGHIFSRSFN-LTNLVTLQLDANQFTGGIP 347
            S+P       G F     L+ LAL+ N LQ  +    F+ LT L  L+L  NQ    +P
Sbjct: 90  -SLP------NGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVP 140

Query: 348 E----------------NLLNCSLLGGLYLSD--NHISGKIPKWLGN 376
           +                N  +C+  G  YLS+  N  SG +    G+
Sbjct: 141 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS 187

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 57  TSVKHLSMRNCYLYGTSDFQGLCELV----HLQELHIGYNNIGGTLPWCLVNM----TSL 108
           T +K +++ N         + L E      H+++  +    I  +    L+ +     SL
Sbjct: 41  TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100

Query: 109 RILDIASNQITGN----ISSSPLRYLTSLEELRVSNNQFQI 145
           R+L++ SN +T      +  S      S+ E +  N +  +
Sbjct: 101 RVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSV 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	779
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-76  Score=694.37  Aligned_cols=668  Identities=29%  Similarity=0.417  Sum_probs=551.6

Q ss_pred             CCCcEEeCCCCcc---------ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCc-ccccCCCCC
Q 046050           15 PNLETLELRDYHL---------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDF-QGLCELVHL   84 (779)
Q Consensus        15 ~~L~~L~Ls~~~~---------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L   84 (779)
                      .+++.|||+++.+         ++.++++|+.++++.+.+. ..+..++.+++|++|+|++|.+.|..|. ..++++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            4688899988765         3567888888888888764 3457788999999999999998776652 268889999


Q ss_pred             cEEEccCcccccccChhc-cCCCCCCEEeCCCCcCcccCCchh---hcCCCCCCEEEcccccccccCCcccccCCCCCcE
Q 046050           85 QELHIGYNNIGGTLPWCL-VNMTSLRILDIASNQITGNISSSP---LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK  160 (779)
Q Consensus        85 ~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~i~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  160 (779)
                      ++|++++|.+++..|..+ .++++|++|++++|++++..+. .   +.++++|++|++++|.+++.++   +..+++|++
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~  204 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF  204 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence            999999999988777765 7899999999999999865554 4   7888999999999999886554   378899999


Q ss_pred             EECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050          161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN  240 (779)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n  240 (779)
                      |++++|.+.+.++.  +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..   .+++|++|++++|
T Consensus       205 L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n  279 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN  279 (768)
T ss_dssp             EECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS
T ss_pred             EECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC
Confidence            99999988765554  778889999999999999999999999999999999999999877763   7899999999999


Q ss_pred             cccccCCCCCCCC-CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCC
Q 046050          241 SLSGFFQMPVNPL-KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ  319 (779)
Q Consensus       241 ~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~  319 (779)
                      ++++..|..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|...  ..++++|++|++++|.++
T Consensus       280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~--l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHH--HTTCTTCCEEECCSSEEE
T ss_pred             ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHH--HhcCCCCCEEeCcCCccC
Confidence            9998888888765 99999999999999888888776 8999999999999988777651  123458999999999999


Q ss_pred             ccccccccCCC-CCCEEEccCCcCccccCccccC--CCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcch
Q 046050          320 GHIFSRSFNLT-NLVTLQLDANQFTGGIPENLLN--CSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPA  396 (779)
Q Consensus       320 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (779)
                      +.+|..+..++ +|++|++++|++++.+|..+..  +++|++|++++|.+++.+|..+.++++|++|++++|.+++..|.
T Consensus       357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence            88999888887 9999999999999888888776  88999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCC
Q 046050          397 NLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHL  473 (779)
Q Consensus       397 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L  473 (779)
                      .+..+++|+.|++++|.+++.+|..+. +++|++|++++|++++..+..+..+  |++|++++|++++.+|.+++.+++|
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            999999999999999999998888776 8899999999999999888888766  9999999999999999999999999


Q ss_pred             cEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCC-CCCCCCCC-C--CCCCCCCCcccc---cc
Q 046050          474 SYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG-NYDSAAPT-S--EGNYGASSPAAG---EA  546 (779)
Q Consensus       474 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~-~~~~~~~~-~--~~~~~~~~~~~~---~~  546 (779)
                      ++|++++|++++.+|..+..+++|++|++++|+++|.+|..++....... .+...... .  ............   ..
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999998854321000 00000000 0  000000000000   00


Q ss_pred             cCC--CCCC-----CCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCc
Q 046050          547 VSP--SGSS-----TMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP  619 (779)
Q Consensus       547 ~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  619 (779)
                      ...  ....     .........+...   .......++.|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~---~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGH---TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEE---CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             ccccchhhhccccccccccccceeccc---CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence            000  0000     0000000000000   00111236789999999999999999999999999999999999999999


Q ss_pred             hhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 046050          620 STFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPN  699 (779)
Q Consensus       620 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l~~~c~~~  699 (779)
                      +.|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||+. ++|.+|...+|.|||++||.|+. .|...
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            99999999999999999999999999999999999999999999999995 89999999999999999999987 89654


Q ss_pred             C
Q 046050          700 G  700 (779)
Q Consensus       700 ~  700 (779)
                      .
T Consensus       752 ~  752 (768)
T 3rgz_A          752 N  752 (768)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.6e-70  Score=639.00  Aligned_cols=637  Identities=26%  Similarity=0.342  Sum_probs=540.5

Q ss_pred             CCCccEEEccccccccc---cchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccCh--hccCCC
Q 046050           32 FTNLEVLILDGSALHIR---FLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPW--CLVNMT  106 (779)
Q Consensus        32 l~~L~~L~L~~~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~  106 (779)
                      -.+++.|+|+++.+.+.   +++++..+++|+.++++.+.+.. .+ ..++.+++|++|+|++|.+++.+|.  .+++++
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~  126 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS  126 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence            36899999999999987   88899999999999999997743 33 3799999999999999999998888  899999


Q ss_pred             CCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCccc--ccCCCCCcEEECcCCceeeecccCCCCCCcccc
Q 046050          107 SLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEP--FFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ  184 (779)
Q Consensus       107 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~  184 (779)
                      +|++|+|++|.+++.+|...+..+++|++|++++|++++..+...  +.++++|++|++++|.+.+..+.   ..+.+|+
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~  203 (768)
T 3rgz_A          127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLE  203 (768)
T ss_dssp             TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCC
T ss_pred             CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCC
Confidence            999999999999988887445899999999999999987554322  78999999999999998765443   6778999


Q ss_pred             EEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCC
Q 046050          185 NISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN  264 (779)
Q Consensus       185 ~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n  264 (779)
                      +|++++|.+.+.+|. +..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..+..  .+++|++|++++|
T Consensus       204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n  279 (768)
T 3rgz_A          204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN  279 (768)
T ss_dssp             EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS
T ss_pred             EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCC
Confidence            999999999988887 9999999999999999998888775 79999999999999999876654  8999999999999


Q ss_pred             CCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccccc-ccCCCCCCEEEccCCcCc
Q 046050          265 FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR-SFNLTNLVTLQLDANQFT  343 (779)
Q Consensus       265 ~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  343 (779)
                      .+++.+|..++..+++|++|++++|.+++.+|..+.   ++++|++|++++|.+.+.+|.. +..+++|++|++++|+++
T Consensus       280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG---GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh---cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence            999999998887669999999999999988887773   3458999999999999877765 889999999999999999


Q ss_pred             cccCccccCCC-CCCEEEccCCccCCCcchhhhC--CCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc
Q 046050          344 GGIPENLLNCS-LLGGLYLSDNHISGKIPKWLGN--LSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS  420 (779)
Q Consensus       344 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  420 (779)
                      +.+|..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+..+++|+.|++++|++++..|.
T Consensus       357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence            99999998887 9999999999999988888877  88999999999999999999999999999999999999999988


Q ss_pred             CcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 046050          421 CFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL  497 (779)
Q Consensus       421 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  497 (779)
                      .+. +++|+.|++++|.+++..+..+...  |++|++++|++++.+|..+.++++|++|++++|++++.+|..+..+++|
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            777 8899999999999999988888766  9999999999999999999999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCC---CCCCCCcccccccCCCCCCCCcccceEEEEEcC-------
Q 046050          498 QLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG---NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN-------  567 (779)
Q Consensus       498 ~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  567 (779)
                      ++|++++|+++|.+|..+       +.++........   ..+..+...........................       
T Consensus       517 ~~L~L~~N~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAEL-------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             CEEECCSSCCEEECCGGG-------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             CEEECCCCcccCcCCHHH-------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            999999999999999887       333222111000   000000000000000000000000000000000       


Q ss_pred             --------ceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc
Q 046050          568 --------TSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ  639 (779)
Q Consensus       568 --------~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  639 (779)
                              .........++.+..++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|+|++|+++
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  669 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS  669 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence                    000001122455667889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCC
Q 046050          640 GKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL  687 (779)
Q Consensus       640 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~l  687 (779)
                      |.+|..++++++|++||+++|+++|.+|..++.+..++.+.+++|+..
T Consensus       670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999999999999999999754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.3e-59  Score=544.29  Aligned_cols=594  Identities=21%  Similarity=0.177  Sum_probs=488.7

Q ss_pred             CcEEeCCCCccc-cC--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc
Q 046050           17 LETLELRDYHLE-LL--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN   93 (779)
Q Consensus        17 L~~L~Ls~~~~~-~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~   93 (779)
                      -+.+|++++.++ +.  -.+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus         6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSC
T ss_pred             CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCc
Confidence            367888888773 22  13689999999999998888889999999999999999976655 478889999999999999


Q ss_pred             cccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecc
Q 046050           94 IGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIE  173 (779)
Q Consensus        94 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  173 (779)
                      +++..+.+|+++++|++|++++|+++ .+++..|+.+++|++|++++|.+++. +...+.++++|++|++++|.+....+
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             cCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence            99766668999999999999999998 66655899999999999999998854 44667889999999999998754433


Q ss_pred             cC-CCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhh--hcCCCCCEEECcCCcccccCCCCC
Q 046050          174 SH-SLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL--ENNKELETLLLANNSLSGFFQMPV  250 (779)
Q Consensus       174 ~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l  250 (779)
                      .. ....+.+|++|++++|.+.+..|..+..+++|+.|+++++.+.+.....+.  -..++|++|++++|.+.+..+..+
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            22 123456899999999999988999999999999999999887643322221  134789999999999999988888


Q ss_pred             CCCCC--ccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCc-----ccc
Q 046050          251 NPLKQ--LTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG-----HIF  323 (779)
Q Consensus       251 ~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-----~~~  323 (779)
                      ..++.  |++|++++|.+++..|..+. .+++|++|++++|.+.+..|..+   .++++|+.|++++|...+     .+|
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~lp  318 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSL---HGLFNVRYLNLKRSFTKQSISLASLP  318 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTT---TTCTTCCEEECTTCBCCC------CC
T ss_pred             hccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhh---cCCCCccEEeccchhhhccccccccc
Confidence            88765  99999999999854444444 48999999999999998777665   345589999999875543     122


Q ss_pred             ----ccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCC--cchhhhC--CCCCceEEccCCCCCCCcc
Q 046050          324 ----SRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGK--IPKWLGN--LSNLVDIIMPNNHLEGPIP  395 (779)
Q Consensus       324 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~--l~~L~~L~L~~n~l~~~~~  395 (779)
                          ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+...  .+..|..  .++|+.|++++|++++..|
T Consensus       319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~  398 (680)
T 1ziw_A          319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES  398 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred             ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence                2677899999999999999988888899999999999999986532  2233433  3689999999999998889


Q ss_pred             hhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCcccc--CcCchhhhc
Q 046050          396 ANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDK  469 (779)
Q Consensus       396 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~--~~~~~~~~~  469 (779)
                      ..|..+++|+.|++++|.+++.++ ..+. +++|++|++++|++.+..+..+...  |+.|++++|.+.  +..|..+..
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            999999999999999999987665 4555 8899999999999998888877755  999999999987  567889999


Q ss_pred             CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 046050          470 LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSP  549 (779)
Q Consensus       470 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (779)
                      +++|++|++++|++++..+..|..+++|++|++++|++++..+..+..     +...                       
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~-----------------------  530 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG-----GPIY-----------------------  530 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT-----SCCC-----------------------
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC-----Ccch-----------------------
Confidence            999999999999999888889999999999999999998532211100     0000                       


Q ss_pred             CCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCC
Q 046050          550 SGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  629 (779)
                                             ....++.|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+
T Consensus       531 -----------------------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          531 -----------------------FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             -----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             -----------------------hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence                                   001257899999999999955556799999999999999999988888899999999


Q ss_pred             EEECCCCcCcCCCchhhh-hcccCcEEEccCCcCcccCCC
Q 046050          630 SLDLSYNMLQGKIPTQLV-ELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       630 ~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      .|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus       588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999998888888 799999999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5e-59  Score=542.85  Aligned_cols=586  Identities=22%  Similarity=0.234  Sum_probs=489.2

Q ss_pred             cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050           36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS  115 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  115 (779)
                      +.++.++++++. +|..+.  +++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++
T Consensus         7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             CeeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            678899988874 454454  699999999999976544 5799999999999999999999999999999999999999


Q ss_pred             CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050          116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF  195 (779)
Q Consensus       116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~  195 (779)
                      |+++ .+|...|+.+++|++|++++|+++ .++...+.++++|++|++++|.+... +...+..+.+|++|++++|.+++
T Consensus        83 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           83 NELS-QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CccC-ccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccc
Confidence            9999 788768999999999999999997 45657789999999999999988543 44556788899999999999988


Q ss_pred             Ccchhhh--CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCC---CCCCCccEEEccCCCCCcCC
Q 046050          196 TFPRFLY--YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPV---NPLKQLTTIDVSKNFIQGHI  270 (779)
Q Consensus       196 ~~~~~l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~i  270 (779)
                      ..+..+.  .+++|++|++++|.+++..|.. +..+++|+.++++++.+.......+   ...++|+.|++++|.+++..
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  238 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS  238 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred             cCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence            7777664  5588999999999998655555 4788999999999988754221111   13478999999999998666


Q ss_pred             chhhhhcC--CCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCcc----
Q 046050          271 PTGIGAFL--PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTG----  344 (779)
Q Consensus       271 ~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----  344 (779)
                      |..+.. +  ++|++|++++|.+++..|..+   ..+++|++|++++|.+.+..+..+..+++|+.|++++|...+    
T Consensus       239 ~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  314 (680)
T 1ziw_A          239 NTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL  314 (680)
T ss_dssp             TTTTGG-GGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred             hhHhhc-cCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence            655544 4  359999999999987766655   345589999999999999888899999999999999876543    


Q ss_pred             -ccC----ccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcC--CCCCCEEEccCccCc
Q 046050          345 -GIP----ENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCK--LNFLTVLDLEVNNIS  415 (779)
Q Consensus       345 -~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~L~~n~l~  415 (779)
                       .+|    ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+...  ....|..  .++|+.|++++|+++
T Consensus       315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~  394 (680)
T 1ziw_A          315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS  394 (680)
T ss_dssp             --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred             ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence             223    2678899999999999999998888999999999999999976532  2223333  368999999999999


Q ss_pred             ccCCcCcC-CCcccEEEccCCcCcccch-hhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCc--ccCcc
Q 046050          416 GSLPSCFS-SWLLTQVHLSRNKIEGQLE-DVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLE--GEVPV  489 (779)
Q Consensus       416 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~  489 (779)
                      +..|..+. +++|+.|++++|.+.+..+ ..+...  |++|++++|++.+..+..+..+++|+.|++++|.+.  +..|.
T Consensus       395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~  474 (680)
T 1ziw_A          395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS  474 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred             eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence            98888777 8899999999999987544 556555  999999999999888889999999999999999987  56788


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCce
Q 046050          490 QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTS  569 (779)
Q Consensus       490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (779)
                      .|..+++|++|++++|++++..|..+                                                      
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~------------------------------------------------------  500 (680)
T 1ziw_A          475 PFQPLRNLTILDLSNNNIANINDDML------------------------------------------------------  500 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTT------------------------------------------------------
T ss_pred             ccccCCCCCEEECCCCCCCcCChhhh------------------------------------------------------
Confidence            99999999999999999985444333                                                      


Q ss_pred             eeecccccceeeEEeccCCccCCCC--------CccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCC
Q 046050          570 YYYQGRILKIMFGLDLSCNKLTGEI--------PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK  641 (779)
Q Consensus       570 ~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  641 (779)
                           ..++.|+.|++++|++++..        +..+.++++|+.|+|++|+++...+..|.++++|+.|+|++|++++.
T Consensus       501 -----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  575 (680)
T 1ziw_A          501 -----EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL  575 (680)
T ss_dssp             -----TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             -----ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence                 11567999999999998542        23478999999999999999966666899999999999999999988


Q ss_pred             CchhhhhcccCcEEEccCCcCcccCCCCCC-cCCCCCCCcccCCCCCCCCCC
Q 046050          642 IPTQLVELYALAIFSVAHNNLSGKVPDRVG-QFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       642 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      .+..|..+++|+.|++++|++++..|..++ .+..++.+.+.|||+.|+|+.
T Consensus       576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            888889999999999999999988877665 688899999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-56  Score=532.57  Aligned_cols=546  Identities=21%  Similarity=0.154  Sum_probs=376.3

Q ss_pred             CCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEe
Q 046050           33 TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILD  112 (779)
Q Consensus        33 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  112 (779)
                      ++|++|+|++|.+++..+.+|..+++|++|+|++|...+.++...+.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            34555555555554444444555555555555555333333223444555555555555555544445555555555555


Q ss_pred             CCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCC
Q 046050          113 IASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGC  191 (779)
Q Consensus       113 Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n  191 (779)
                      |++|.+++.++. ..++.+++|++|++++|.++                                               
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-----------------------------------------------  136 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-----------------------------------------------  136 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-----------------------------------------------
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCccc-----------------------------------------------
Confidence            555555433332 12444455555555554443                                               


Q ss_pred             cCCCCc-chhhhCCCCCCEEEccCCCCCCcCchhhhhcC--CCCCEEECcCCcccccCCCCCCCCCC------ccEEEcc
Q 046050          192 RCDFTF-PRFLYYQHELRYVDLSHMNLRGEFPNWLLENN--KELETLLLANNSLSGFFQMPVNPLKQ------LTTIDVS  262 (779)
Q Consensus       192 ~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~Ls  262 (779)
                         +.. +..+..+++|++|++++|.+++..+..+ ..+  ++|+.|++++|.+.+..+..+..+.+      |++|+++
T Consensus       137 ---~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  212 (844)
T 3j0a_A          137 ---SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS  212 (844)
T ss_dssp             ---CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred             ---ccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence               222 2345556666666666666654444443 333  56666666666666555555444443      7777777


Q ss_pred             CCCCCcCCchhhhhcC--CCCCEEEccCCcC---------CcccCcccccccCCccccEEEccCCcCCccccccccCCCC
Q 046050          263 KNFIQGHIPTGIGAFL--PRLEHFNISRNVL---------NGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTN  331 (779)
Q Consensus       263 ~n~l~~~i~~~~~~~l--~~L~~L~l~~n~l---------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  331 (779)
                      +|.+++.++..+....  .+++.+.++.+..         .+..+..+.. ...++|+.|++++|.+.+..+..+..+++
T Consensus       213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  291 (844)
T 3j0a_A          213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLNSRVFETLKD  291 (844)
T ss_dssp             SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT-TTTSCCCEEECTTCCCCEECSCCSSSCCC
T ss_pred             CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc-cccCCccEEECCCCcccccChhhhhcCCC
Confidence            7777666665554422  4567777663322         2211222211 01248999999999999888888999999


Q ss_pred             CCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 046050          332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEV  411 (779)
Q Consensus       332 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  411 (779)
                      |+.|++++|++.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus       292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            99999999999988888899999999999999999988889999999999999999999988888899999999999999


Q ss_pred             ccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcC-chhhhcCCCCcEEEccCCcCcccCcc-
Q 046050          412 NNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI-PNWIDKLSHLSYLILANNNLEGEVPV-  489 (779)
Q Consensus       412 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-  489 (779)
                      |.+++...    +++|+.+++++|+++..+..  ...++.|++++|++++.. +..+..+++|++|+|++|++++..+. 
T Consensus       372 N~l~~i~~----~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          372 NALTTIHF----IPSIPDIFLSGNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CCSCCCSS----CCSCSEEEEESCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             CCCCcccC----CCCcchhccCCCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            99885332    67899999999999866543  233899999999998643 23456899999999999999865543 


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCce
Q 046050          490 QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTS  569 (779)
Q Consensus       490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (779)
                      .+..+++|+.|++++|.+++..+.....     ..                                             
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----~~---------------------------------------------  475 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCW-----DV---------------------------------------------  475 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCS-----SC---------------------------------------------
T ss_pred             ccccCCccccccCCCCccccccccccch-----hh---------------------------------------------
Confidence            4567899999999999997432221100     00                                             


Q ss_pred             eeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc
Q 046050          570 YYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL  649 (779)
Q Consensus       570 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  649 (779)
                          ...++.|+.|||++|++++..|..|..+++|+.|+|++|++++..|..+.  ++|+.|+|++|++++.+|..|   
T Consensus       476 ----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---  546 (844)
T 3j0a_A          476 ----FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---  546 (844)
T ss_dssp             ----SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---
T ss_pred             ----hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---
Confidence                01257899999999999988889999999999999999999987777765  899999999999999998775   


Q ss_pred             ccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 046050          650 YALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYPNG  700 (779)
Q Consensus       650 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l~~~c~~~~  700 (779)
                      .+|+.|++++|++.|.|+-     .+|..+...++..+|+.+....|..+.
T Consensus       547 ~~L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          547 VSLSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             SSCCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             CCcCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCch
Confidence            4789999999999998874     223333345677778777777886443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.3e-55  Score=500.01  Aligned_cols=534  Identities=18%  Similarity=0.162  Sum_probs=397.5

Q ss_pred             EEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCC
Q 046050           37 VLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN  116 (779)
Q Consensus        37 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  116 (779)
                      +++.++..++ .+|..+..  ++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++|
T Consensus        16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            4555555554 33443432  56777777777654444 35666777777777777776666666777777777777777


Q ss_pred             cCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC
Q 046050          117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT  196 (779)
Q Consensus       117 ~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~  196 (779)
                      ++++..|. .|+.+++|++|++++|++++ ++...+                         ..+.+|++|++++|.+.+.
T Consensus        92 ~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-l~~~~~-------------------------~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A           92 PLIFMAET-ALSGPKALKHLFFIQTGISS-IDFIPL-------------------------HNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             CCSEECTT-TTSSCTTCCEEECTTSCCSC-GGGSCC-------------------------TTCTTCCEEECCSSCCCCC
T ss_pred             cccccChh-hhcccccccEeeccccCccc-CCcchh-------------------------ccCCcccEEECCCCccccc
Confidence            77633333 66677777777777776653 111222                         3333455555555555543


Q ss_pred             cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCC--EEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhh
Q 046050          197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELE--TLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGI  274 (779)
Q Consensus       197 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~  274 (779)
                      .+..+..+++|++|++++|.+++..+.. ++.+++|+  +|++++|.+.+..+..+.. .+|+.|++++|.   .++..+
T Consensus       145 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~  219 (606)
T 3t6q_A          145 KLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF  219 (606)
T ss_dssp             CCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH
T ss_pred             CcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh
Confidence            3233334777777777777777333433 46777777  7778888777766655543 578888888775   233333


Q ss_pred             hhcCCCCCEEEccCCcCCcccCccc--ccccCCc--cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccc
Q 046050          275 GAFLPRLEHFNISRNVLNGSIPCSL--HMTMGCF--SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL  350 (779)
Q Consensus       275 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  350 (779)
                      .. +..+....+....+.......+  ..+.++.  +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+
T Consensus       220 ~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l  297 (606)
T 3t6q_A          220 KG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL  297 (606)
T ss_dssp             HH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC
T ss_pred             hh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh
Confidence            33 4444433333322221111111  1111111  6899999999999888888999999999999999998 788889


Q ss_pred             cCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcch-hhcCCCCCCEEEccCccCcccC--CcCcC-CCc
Q 046050          351 LNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPA-NLCKLNFLTVLDLEVNNISGSL--PSCFS-SWL  426 (779)
Q Consensus       351 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~-~~~  426 (779)
                      .++++|++|++++|++++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+. +++
T Consensus       298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  377 (606)
T 3t6q_A          298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH  377 (606)
T ss_dssp             CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred             cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence            9999999999999999988888899999999999999998866554 4889999999999999998765  54454 889


Q ss_pred             ccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEcc
Q 046050          427 LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS  503 (779)
Q Consensus       427 L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  503 (779)
                      |++|++++|++.+..+..+...  |+.|++++|++++..+ ..+..+++|++|++++|++.+..|..+..+++|++|+++
T Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            9999999999998888877655  9999999999987765 448899999999999999998889999999999999999


Q ss_pred             CCcCcccC-C--chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeeccccccee
Q 046050          504 HNNLSGTI-P--SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIM  580 (779)
Q Consensus       504 ~N~l~~~~-p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  580 (779)
                      +|++++.. |  ..+                                                           ..+++|
T Consensus       458 ~n~l~~~~~~~~~~~-----------------------------------------------------------~~l~~L  478 (606)
T 3t6q_A          458 GNHFPKGNIQKTNSL-----------------------------------------------------------QTLGRL  478 (606)
T ss_dssp             TCBCGGGEECSSCGG-----------------------------------------------------------GGCTTC
T ss_pred             CCCCCccccccchhh-----------------------------------------------------------ccCCCc
Confidence            99997522 2  111                                                           125789


Q ss_pred             eEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          581 FGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       581 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      +.|++++|++++..|..++.+++|+.|+|++|++++..|..+.++++| .|++++|++++..|..+..+++|++|++++|
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence            999999999998889999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             cCcccCCC
Q 046050          661 NLSGKVPD  668 (779)
Q Consensus       661 ~l~~~~p~  668 (779)
                      +++|.|+.
T Consensus       558 ~~~c~c~~  565 (606)
T 3t6q_A          558 PLDCTCSN  565 (606)
T ss_dssp             CEECSGGG
T ss_pred             CccccCCc
Confidence            99998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-56  Score=524.69  Aligned_cols=531  Identities=20%  Similarity=0.183  Sum_probs=414.8

Q ss_pred             EEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEccc
Q 046050           61 HLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN  140 (779)
Q Consensus        61 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~  140 (779)
                      ..+.+++.++ .+|.    ..++|++|+|++|.|++..+..|.++++|++|+|++|...+.+++..|+++++|++|+|++
T Consensus         8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            4555555553 2331    2356666666666666655666666666666666666544455444566666666666666


Q ss_pred             ccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchh--hhCCCCCCEEEccCCCCC
Q 046050          141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF--LYYQHELRYVDLSHMNLR  218 (779)
Q Consensus       141 n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~--l~~~~~L~~L~Ls~n~l~  218 (779)
                      |.+++..                          +..+.++.+|++|+|++|.+.+..|..  +..+++|++|++++|.++
T Consensus        83 N~l~~~~--------------------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           83 SKIYFLH--------------------------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             CCCCEEC--------------------------TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             CcCcccC--------------------------HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence            6655221                          122333334555555555555444443  788899999999999998


Q ss_pred             CcCchhhhhcCCCCCEEECcCCcccccCCCCCCCC--CCccEEEccCCCCCcCCchhhhhcCC------CCCEEEccCCc
Q 046050          219 GEFPNWLLENNKELETLLLANNSLSGFFQMPVNPL--KQLTTIDVSKNFIQGHIPTGIGAFLP------RLEHFNISRNV  290 (779)
Q Consensus       219 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~------~L~~L~l~~n~  290 (779)
                      +..+...++++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+.. ++      .|+.|++++|.
T Consensus       137 ~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCC
T ss_pred             ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCc
Confidence            66555556899999999999999998888888777  89999999999998777765443 33      49999999999


Q ss_pred             CCcccCcccccccCCccccEEEccCC---------cCCccccccccCC--CCCCEEEccCCcCccccCccccCCCCCCEE
Q 046050          291 LNGSIPCSLHMTMGCFSLQILALSNN---------SLQGHIFSRSFNL--TNLVTLQLDANQFTGGIPENLLNCSLLGGL  359 (779)
Q Consensus       291 l~~~~~~~~~~~~~~~~L~~L~ls~n---------~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  359 (779)
                      +++..+..+........++.+.++.+         .+.+.....+.++  ++|+.|++++|.+.+..+..+..+++|+.|
T Consensus       216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  295 (844)
T 3j0a_A          216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL  295 (844)
T ss_dssp             SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred             CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence            99888877743333347888888743         3333334445444  789999999999998888999999999999


Q ss_pred             EccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCc
Q 046050          360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIE  438 (779)
Q Consensus       360 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~  438 (779)
                      ++++|++++..|..|..+++|++|++++|.+++..+..|.++++|+.|++++|++.+..+..+. +++|+.|++++|.++
T Consensus       296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            9999999988899999999999999999999988899999999999999999999988887777 889999999999998


Q ss_pred             ccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccC-cccccCCCCCCEEEccCCcCcccCCchhhh
Q 046050          439 GQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEV-PVQLCLLKQLQLIDLSHNNLSGTIPSCLYK  517 (779)
Q Consensus       439 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  517 (779)
                      +...   ...|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+...+ 
T Consensus       376 ~i~~---~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  447 (844)
T 3j0a_A          376 TIHF---IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-  447 (844)
T ss_dssp             CCSS---CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-
T ss_pred             cccC---CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-
Confidence            7654   334999999999998 44543   568999999999998753 33456899999999999999854332110 


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccC-----C
Q 046050          518 TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLT-----G  592 (779)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~  592 (779)
                                                                               ..+++|+.|++++|.++     +
T Consensus       448 ---------------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~  470 (844)
T 3j0a_A          448 ---------------------------------------------------------SENPSLEQLFLGENMLQLAWETE  470 (844)
T ss_dssp             ---------------------------------------------------------CSCTTCCBCEEESCCCSSSCCSC
T ss_pred             ---------------------------------------------------------ccCCccccccCCCCccccccccc
Confidence                                                                     01467899999999997     4


Q ss_pred             CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCc
Q 046050          593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ  672 (779)
Q Consensus       593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  672 (779)
                      ..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|++|++++|++++.+|..   
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---  545 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---  545 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---
T ss_pred             cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH---
Confidence            5567799999999999999999999999999999999999999999988777766  89999999999999999975   


Q ss_pred             CCCCCCCcccCCCCCCCCCCC
Q 046050          673 FATFTENSYDGNSLLCGQPLS  693 (779)
Q Consensus       673 ~~~l~~~~~~~N~~lc~~~l~  693 (779)
                      +..+..+.+.|||+.|+|++.
T Consensus       546 ~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          546 FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CSSCCEEEEEEECCCCSSSCC
T ss_pred             hCCcCEEEecCCCcccccccH
Confidence            457788899999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-54  Score=493.19  Aligned_cols=534  Identities=20%  Similarity=0.174  Sum_probs=436.5

Q ss_pred             cCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEc
Q 046050           59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV  138 (779)
Q Consensus        59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L  138 (779)
                      -++++.++..+. .+|. .+.  .++++|++++|.+++..|..|+++++|++|+|++|+++ .+++..|+++++|++|++
T Consensus        14 ~~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L   88 (606)
T 3t6q_A           14 NKTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL   88 (606)
T ss_dssp             TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence            347888888775 4452 343  47899999999999888889999999999999999998 454448999999999999


Q ss_pred             ccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCC
Q 046050          139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR  218 (779)
Q Consensus       139 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~  218 (779)
                      ++|++++.                          ....+..+.+|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        89 s~n~l~~~--------------------------~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~  142 (606)
T 3t6q_A           89 TANPLIFM--------------------------AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS  142 (606)
T ss_dssp             TTCCCSEE--------------------------CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred             CCCccccc--------------------------ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc
Confidence            99988732                          2233455568889999999988776778889999999999999988


Q ss_pred             Cc-CchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCcc--EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCccc
Q 046050          219 GE-FPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT--TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI  295 (779)
Q Consensus       219 ~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~  295 (779)
                      +. .|..  ..+++|++|++++|.+++..+..+..+++|+  +|++++|.++ .++...+. ...|+.|++++|..   .
T Consensus       143 ~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~~~~---~  215 (606)
T 3t6q_A          143 SIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFD-SAVFQSLNFGGTQN---L  215 (606)
T ss_dssp             CCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC-EECTTTTT-TCEEEEEECTTCSC---H
T ss_pred             ccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC-ccChhHhh-hccccccccCCchh---H
Confidence            52 2443  3488999999999999888777788888888  8899999998 44445554 46889999988862   2


Q ss_pred             CcccccccCCccccEEEccCC---cCCccccccccCCC--CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCc
Q 046050          296 PCSLHMTMGCFSLQILALSNN---SLQGHIFSRSFNLT--NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKI  370 (779)
Q Consensus       296 ~~~~~~~~~~~~L~~L~ls~n---~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  370 (779)
                      +..+.... ...++.+.+...   ......+..+..+.  +|+.|++++|.+++..+..|..+++|++|++++|+++ .+
T Consensus       216 ~~~~~~l~-~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l  293 (606)
T 3t6q_A          216 LVIFKGLK-NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL  293 (606)
T ss_dssp             HHHHHHTT-TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred             HHHhhhcc-ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence            22221111 012344443322   11112223333333  7999999999999888888999999999999999999 77


Q ss_pred             chhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc-CcC-CCcccEEEccCCcCcccc--hhhHh
Q 046050          371 PKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CFS-SWLLTQVHLSRNKIEGQL--EDVFG  446 (779)
Q Consensus       371 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~~~L~~L~l~~n~l~~~~--~~~~~  446 (779)
                      |..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++. .+. +++|++|++++|.+++..  +..+.
T Consensus       294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  373 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR  373 (606)
T ss_dssp             CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred             ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence            88899999999999999999988888999999999999999999866654 354 889999999999999876  55555


Q ss_pred             hc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc-cccCCCCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050          447 DI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV-QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG  523 (779)
Q Consensus       447 ~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~  523 (779)
                      ..  |++|++++|++.+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++..|..+       +
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~  446 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-------D  446 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-------T
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-------h
Confidence            54  99999999999988899999999999999999999977654 48999999999999999987666554       1


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC---CCccccC
Q 046050          524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE---IPFQIGY  600 (779)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~l~~  600 (779)
                                                                          .+++|++|++++|++++.   .+..+..
T Consensus       447 ----------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          447 ----------------------------------------------------GLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             ----------------------------------------------------TCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             ----------------------------------------------------CCCCCCEEECCCCCCCccccccchhhcc
Confidence                                                                157899999999999862   3467899


Q ss_pred             cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCc
Q 046050          601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENS  680 (779)
Q Consensus       601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~  680 (779)
                      +++|+.|++++|++++..|..|+++++|+.|+|++|++++..|..+..++.| +|++++|++++.+|..++.+..++.+.
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence            9999999999999999999999999999999999999999999999999999 999999999998888788889999999


Q ss_pred             ccCCCCCCCCCC
Q 046050          681 YDGNSLLCGQPL  692 (779)
Q Consensus       681 ~~~N~~lc~~~l  692 (779)
                      +.|||+.|+|+.
T Consensus       554 l~~N~~~c~c~~  565 (606)
T 3t6q_A          554 LRQNPLDCTCSN  565 (606)
T ss_dssp             CTTCCEECSGGG
T ss_pred             CCCCCccccCCc
Confidence            999999998863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-53  Score=488.34  Aligned_cols=530  Identities=19%  Similarity=0.159  Sum_probs=385.6

Q ss_pred             cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050           36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS  115 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  115 (779)
                      ++++.+++.++. +|..+.  +++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|.+|+++++|++|+|++
T Consensus        14 ~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           14 ITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            456666666653 333332  567777777777754444 3566777777777777777766666777777777777777


Q ss_pred             CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050          116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF  195 (779)
Q Consensus       116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~  195 (779)
                      |++++..|. .|+++++|++|++++|++++ ++                         ...+..+.+|++|++++|.+.+
T Consensus        90 n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~-~~-------------------------~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A           90 NPIQSFSPG-SFSGLTSLENLVAVETKLAS-LE-------------------------SFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             CCCCCCCTT-SSTTCTTCCEEECTTSCCCC-SS-------------------------SSCCTTCTTCCEEECCSSCCCC
T ss_pred             CcccccChh-hcCCcccCCEEEccCCcccc-cc-------------------------ccccCCCCCCCEEeCCCCcccc
Confidence            777633243 67777777777777776652 11                         1223344466666666666654


Q ss_pred             -CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCC----CCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCC
Q 046050          196 -TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKE----LETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHI  270 (779)
Q Consensus       196 -~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~----L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i  270 (779)
                       .+|..+..+++|++|++++|.+++..+..+ +.+++    +++|++++|.+.+..+..+... +|++|++++|.+.+..
T Consensus       143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~  220 (606)
T 3vq2_A          143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI  220 (606)
T ss_dssp             CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH
T ss_pred             eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH
Confidence             468889999999999999999985545433 44444    4589999999998777666655 8999999999887443


Q ss_pred             chhhhhcCCCCCEEEccCCcCCccc------CcccccccCCccccEEEc-cCCcCCccccccccCCCCCCEEEccCCcCc
Q 046050          271 PTGIGAFLPRLEHFNISRNVLNGSI------PCSLHMTMGCFSLQILAL-SNNSLQGHIFSRSFNLTNLVTLQLDANQFT  343 (779)
Q Consensus       271 ~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  343 (779)
                      .......++.++.+++..+.+.+..      +..+..... .+++.+++ ..+.+.+..+. +..+++|+.|++++|.+.
T Consensus       221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~-l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~  298 (606)
T 3vq2_A          221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD-VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK  298 (606)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG-SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC
T ss_pred             HHHHhccccccccccccccccccCCcccccChHHhhhhhh-ccHhheeccccccccccccc-cccCCCCCEEEecCccch
Confidence            3334444888988888655443211      111111111 15777777 66778877776 888899999999999987


Q ss_pred             cccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC--CcC
Q 046050          344 GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL--PSC  421 (779)
Q Consensus       344 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~  421 (779)
                       .+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+..  .+..+++|+.|++++|.+++..  +..
T Consensus       299 -~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~  371 (606)
T 3vq2_A          299 -YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYS  371 (606)
T ss_dssp             -CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred             -hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhh
Confidence             455 788889999999999999 46774 4 8899999999999654333  5678899999999999888662  443


Q ss_pred             cC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 046050          422 FS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL  497 (779)
Q Consensus       422 ~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  497 (779)
                      +. +++|++|++++|.+++.+ ..+...  |+.|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..+++|
T Consensus       372 ~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  450 (606)
T 3vq2_A          372 DLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL  450 (606)
T ss_dssp             HHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence            33 788899999888887755 334333  8888888888887766 678888888888888888888888888888888


Q ss_pred             CEEEccCCcCccc-CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccc
Q 046050          498 QLIDLSHNNLSGT-IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRI  576 (779)
Q Consensus       498 ~~L~Ls~N~l~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (779)
                      ++|++++|++++. +|..+       +                                                    .
T Consensus       451 ~~L~l~~n~l~~~~~~~~~-------~----------------------------------------------------~  471 (606)
T 3vq2_A          451 NTLKMAGNSFKDNTLSNVF-------A----------------------------------------------------N  471 (606)
T ss_dssp             CEEECTTCEEGGGEECSCC-------T----------------------------------------------------T
T ss_pred             CEEECCCCcCCCcchHHhh-------c----------------------------------------------------c
Confidence            8888888888763 44433       1                                                    1


Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc-cCcEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY-ALAIF  655 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L  655 (779)
                      +++|+.|++++|++++..|..++.+++|+.|+|++|++++.+|..|.++++|+.|+|++|+++ .+|..+..++ +|++|
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF  550 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence            467888888888888888888888888888888888888888888888888888888888888 6677788886 58888


Q ss_pred             EccCCcCcccCCC
Q 046050          656 SVAHNNLSGKVPD  668 (779)
Q Consensus       656 ~ls~N~l~~~~p~  668 (779)
                      ++++|++.|.++.
T Consensus       551 ~l~~N~~~c~c~~  563 (606)
T 3vq2_A          551 NLTNNSVACICEH  563 (606)
T ss_dssp             ECCSCCCCCSSTT
T ss_pred             EccCCCcccCCcc
Confidence            8888888887775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.9e-53  Score=484.46  Aligned_cols=530  Identities=18%  Similarity=0.157  Sum_probs=439.8

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      .-++++.+++.+. .+|. .+.  ++|++|++++|.+++..+..|+++++|++|++++|+++ .+++..|+++++|++|+
T Consensus        12 ~~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           12 PNITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence            3468999999885 4553 343  78999999999999888889999999999999999999 55554899999999999


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL  217 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l  217 (779)
                      +++|++++..+                          ..+..+.+|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus        87 Ls~n~l~~~~p--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  140 (606)
T 3vq2_A           87 LTGNPIQSFSP--------------------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI  140 (606)
T ss_dssp             CTTCCCCCCCT--------------------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccCh--------------------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence            99999874222                          3344555777888888888877778899999999999999999


Q ss_pred             CC-cCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCcc----EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050          218 RG-EFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT----TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN  292 (779)
Q Consensus       218 ~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~  292 (779)
                      ++ .+|..+ +++++|++|++++|++++..+..+..+.+|+    +|++++|.++ .++...+.. .+|+.|++++|.+.
T Consensus       141 ~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          141 HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNS  217 (606)
T ss_dssp             CCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSC
T ss_pred             cceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccc
Confidence            85 567765 7999999999999999998888887776655    8999999998 777777764 48999999999887


Q ss_pred             c-ccCcccccccCCccccEEEccCCcCCc------cccccccCCC--CCCEEEc-cCCcCccccCccccCCCCCCEEEcc
Q 046050          293 G-SIPCSLHMTMGCFSLQILALSNNSLQG------HIFSRSFNLT--NLVTLQL-DANQFTGGIPENLLNCSLLGGLYLS  362 (779)
Q Consensus       293 ~-~~~~~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~  362 (779)
                      + ..|..+   .++..++.+++..+.+.+      .....+..+.  .++.+++ ..+.+.+..|. +..+++|+.|+++
T Consensus       218 ~~~~~~~~---~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~  293 (606)
T 3vq2_A          218 SNIMKTCL---QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLA  293 (606)
T ss_dssp             HHHHHHHH---HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEE
T ss_pred             hhHHHHHh---ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEec
Confidence            4 333333   344478877776544332      1112222222  4667777 67788877776 8999999999999


Q ss_pred             CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccc-
Q 046050          363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQL-  441 (779)
Q Consensus       363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-  441 (779)
                      +|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.. ....+++|++|++++|.+++.. 
T Consensus       294 ~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~  367 (606)
T 3vq2_A          294 GVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGC  367 (606)
T ss_dssp             SCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEE
T ss_pred             Cccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcc
Confidence            99997 455 788999999999999999 5777 45 9999999999999766544 3345889999999999999874 


Q ss_pred             -hhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCCchhhh
Q 046050          442 -EDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIPSCLYK  517 (779)
Q Consensus       442 -~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  517 (779)
                       +..+...  |++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+  
T Consensus       368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--  444 (606)
T 3vq2_A          368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--  444 (606)
T ss_dssp             CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--
T ss_pred             hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--
Confidence             5566555  9999999999985 56788999999999999999998877 789999999999999999997777655  


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC-CCCc
Q 046050          518 TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG-EIPF  596 (779)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~  596 (779)
                           +                                                    .+++|++|++++|++++ .+|.
T Consensus       445 -----~----------------------------------------------------~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          445 -----L----------------------------------------------------GLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             -----T----------------------------------------------------TCTTCCEEECTTCEEGGGEECS
T ss_pred             -----c----------------------------------------------------CCCCCCEEECCCCcCCCcchHH
Confidence                 1                                                    15689999999999997 4789


Q ss_pred             cccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCC-C
Q 046050          597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFA-T  675 (779)
Q Consensus       597 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~  675 (779)
                      .++.+++|+.|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|++++|+++ .+|..+..+. .
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~  546 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKS  546 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 5776677776 5


Q ss_pred             CCCCcccCCCCCCCCCC
Q 046050          676 FTENSYDGNSLLCGQPL  692 (779)
Q Consensus       676 l~~~~~~~N~~lc~~~l  692 (779)
                      ++.+.+.+||+.|+|+.
T Consensus       547 L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          547 LAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCEEECCSCCCCCSSTT
T ss_pred             CcEEEccCCCcccCCcc
Confidence            89999999999999976

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-48  Score=443.63  Aligned_cols=515  Identities=18%  Similarity=0.173  Sum_probs=348.8

Q ss_pred             cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050           36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS  115 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  115 (779)
                      ++++.++.+++. +|..+.  +++++|++++|.+.+..+ ..+..+++|++|++++|++++..+.+|+++++|++|++++
T Consensus        10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            345555555542 333332  367777777777754443 3567777777777777777766666777777777777777


Q ss_pred             CcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC
Q 046050          116 NQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF  195 (779)
Q Consensus       116 n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~  195 (779)
                      |+++ .+++..|+.+++|++|++++|++++ ++                         ...+..+.+|++|++++|.+.+
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~-------------------------~~~~~~l~~L~~L~L~~n~l~~  138 (570)
T 2z63_A           86 NPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LE-------------------------NFPIGHLKTLKELNVAHNLIQS  138 (570)
T ss_dssp             CCCC-EECTTTTTTCTTCCEEECTTSCCCC-ST-------------------------TCSCTTCTTCCEEECCSSCCCC
T ss_pred             CcCC-ccCHhhhcCcccccccccccccccc-CC-------------------------CccccccccccEEecCCCccce
Confidence            7777 4554467777777777777777652 22                         1123444466666666666665


Q ss_pred             -CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCC----CEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcC-
Q 046050          196 -TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL----ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGH-  269 (779)
Q Consensus       196 -~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-  269 (779)
                       .+|..+.++++|++|++++|.+++..+.. ++.+++|    +.+++++|.+.+..+..+... +|+.|++++|..... 
T Consensus       139 ~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~  216 (570)
T 2z63_A          139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV  216 (570)
T ss_dssp             CCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH
T ss_pred             ecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc
Confidence             46888999999999999999998544444 4667777    899999999998888777766 899999999865422 


Q ss_pred             CchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCC-cCccccCc
Q 046050          270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDAN-QFTGGIPE  348 (779)
Q Consensus       270 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  348 (779)
                      ++..+. .++.++...+....+....           .++.  +....+     ..+..+ .++.++++++ .+.+..+.
T Consensus       217 ~~~~~~-~l~~l~~~~l~~~~~~~~~-----------~l~~--~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~  276 (570)
T 2z63_A          217 MKTCIQ-GLAGLEVHRLVLGEFRNEG-----------NLEK--FDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIID  276 (570)
T ss_dssp             HHHHHH-TTTTCEEEEEEEEECCCCS-----------SCEE--CCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTT
T ss_pred             hhhhhc-CccccceeeeccccccCch-----------hhhh--cchhhh-----cccccc-chhhhhhhcchhhhhhchh
Confidence            333333 3667776655433322100           0110  000111     011111 2344455544 44444555


Q ss_pred             cccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc
Q 046050          349 NLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT  428 (779)
Q Consensus       349 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  428 (779)
                      .+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|+
T Consensus       277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~  350 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLE  350 (570)
T ss_dssp             TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCC
T ss_pred             hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCC
Confidence            5555566666666666655 345555555 6666666666655 3333  3456666666666666544443 3456666


Q ss_pred             EEEccCCcCcccc--hhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEcc
Q 046050          429 QVHLSRNKIEGQL--EDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLS  503 (779)
Q Consensus       429 ~L~l~~n~l~~~~--~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls  503 (779)
                      +|++++|.+++..  +..+...  |+.|++++|.+.+..+. +..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            6666666666553  3444433  78888888887755444 7888999999999999887665 568888999999999


Q ss_pred             CCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEE
Q 046050          504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGL  583 (779)
Q Consensus       504 ~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  583 (779)
                      +|++.+..|..+       .                                                    .+++|+.|
T Consensus       430 ~n~l~~~~~~~~-------~----------------------------------------------------~l~~L~~L  450 (570)
T 2z63_A          430 HTHTRVAFNGIF-------N----------------------------------------------------GLSSLEVL  450 (570)
T ss_dssp             TSCCEECCTTTT-------T----------------------------------------------------TCTTCCEE
T ss_pred             CCcccccchhhh-------h----------------------------------------------------cCCcCcEE
Confidence            999886666544       1                                                    14678889


Q ss_pred             eccCCccC-CCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcC
Q 046050          584 DLSCNKLT-GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL  662 (779)
Q Consensus       584 dLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  662 (779)
                      ++++|.++ +.+|..+..+++|+.|++++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999987 57888999999999999999999988899999999999999999999988888899999999999999999


Q ss_pred             cccCCCC
Q 046050          663 SGKVPDR  669 (779)
Q Consensus       663 ~~~~p~~  669 (779)
                      +|.||..
T Consensus       531 ~~~~~~~  537 (570)
T 2z63_A          531 DCSCPRI  537 (570)
T ss_dssp             CCCTTTT
T ss_pred             cCCCcch
Confidence            9999873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.6e-48  Score=438.25  Aligned_cols=485  Identities=17%  Similarity=0.193  Sum_probs=344.1

Q ss_pred             EEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCC
Q 046050           37 VLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN  116 (779)
Q Consensus        37 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  116 (779)
                      +.+.+++.++. +|..+.  ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.+|+++++|++|++++|
T Consensus         9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A            9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             eEECCCCcccc-ccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence            34555555553 333332  466777777776654444 35666777777777777776666666777777777777777


Q ss_pred             cCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC
Q 046050          117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT  196 (779)
Q Consensus       117 ~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~  196 (779)
                      +++ .++...|+.+++|++|++++|++++.                                                 .
T Consensus        85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------------------------------------------~  114 (549)
T 2z81_A           85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTL-------------------------------------------------G  114 (549)
T ss_dssp             CCC-SCCHHHHTTCTTCCEEECTTCCCSSS-------------------------------------------------C
T ss_pred             ccC-ccCHHHhccCCCCcEEECCCCccccc-------------------------------------------------c
Confidence            776 44543566677777777776665420                                                 1


Q ss_pred             cchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhh
Q 046050          197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGA  276 (779)
Q Consensus       197 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~  276 (779)
                      .|..+..+++|++|++++|.+.+.+|...+.++++|++|++++|++++..+..+..+++|++|++++|.+. .+|..++.
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~  193 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD  193 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHH
T ss_pred             hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHh
Confidence            23455667778888888887544666544578888888889888888888888889999999999999887 77877766


Q ss_pred             cCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccc----cccCCCCCCEEEccCCcCcccc------
Q 046050          277 FLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS----RSFNLTNLVTLQLDANQFTGGI------  346 (779)
Q Consensus       277 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~------  346 (779)
                      .+++|++|++++|.+++...........+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+..      
T Consensus       194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  273 (549)
T 2z81_A          194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE  273 (549)
T ss_dssp             STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred             hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence            688999999999998864322222233455889999999988764433    3356788899999988876431      


Q ss_pred             CccccCCCCCCEEEccCCccCCC-----cchhhhCCCCCceEEccCCCCCCCcchhh-cCCCCCCEEEccCccCcccCCc
Q 046050          347 PENLLNCSLLGGLYLSDNHISGK-----IPKWLGNLSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS  420 (779)
Q Consensus       347 ~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~  420 (779)
                      ...+..+++++.|++.++.+...     .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..|.
T Consensus       274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~  352 (549)
T 2z81_A          274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK  352 (549)
T ss_dssp             TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence            12345667788888887776532     1222334456777777777766 444444 4577777777777776654321


Q ss_pred             ---CcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCc--hhhhcCCCCcEEEccCCcCcccCcccccCC
Q 046050          421 ---CFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP--NWIDKLSHLSYLILANNNLEGEVPVQLCLL  494 (779)
Q Consensus       421 ---~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  494 (779)
                         .+. +++|++                      |++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+
T Consensus       353 ~~~~~~~l~~L~~----------------------L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          353 NSACKGAWPSLQT----------------------LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHTCTTSSTTCCE----------------------EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             chhhhhccccCcE----------------------EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence               121 444444                      4555555443321  45778899999999999998 577788889


Q ss_pred             CCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecc
Q 046050          495 KQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQG  574 (779)
Q Consensus       495 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (779)
                      ++|++|++++|+++ .+|..+                                                           
T Consensus       410 ~~L~~L~Ls~N~l~-~l~~~~-----------------------------------------------------------  429 (549)
T 2z81_A          410 EKMRFLNLSSTGIR-VVKTCI-----------------------------------------------------------  429 (549)
T ss_dssp             TTCCEEECTTSCCS-CCCTTS-----------------------------------------------------------
T ss_pred             ccccEEECCCCCcc-cccchh-----------------------------------------------------------
Confidence            99999999999987 444332                                                           


Q ss_pred             cccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcE
Q 046050          575 RILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAI  654 (779)
Q Consensus       575 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  654 (779)
                        ++.|+.||+++|++++.+    ..+++|+.|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|++
T Consensus       430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  501 (549)
T 2z81_A          430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK  501 (549)
T ss_dssp             --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred             --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence              346889999999999643    57899999999999999 6776 568999999999999999999999999999999


Q ss_pred             EEccCCcCcccCCC
Q 046050          655 FSVAHNNLSGKVPD  668 (779)
Q Consensus       655 L~ls~N~l~~~~p~  668 (779)
                      |++++|+++|.||.
T Consensus       502 L~l~~N~~~~~~~~  515 (549)
T 2z81_A          502 IWLHTNPWDCSCPR  515 (549)
T ss_dssp             EECCSSCBCCCHHH
T ss_pred             EEecCCCccCCCcc
Confidence            99999999999984

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-47  Score=434.55  Aligned_cols=511  Identities=19%  Similarity=0.205  Sum_probs=375.1

Q ss_pred             cCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEc
Q 046050           59 VKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRV  138 (779)
Q Consensus        59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L  138 (779)
                      .++++.++..+. .+|. .+  .+++++|++++|.+++..+.+|.++++|++|++++|+++ .++...|+.+++|++|++
T Consensus         9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence            456777776664 3442 33  357899999999998888888999999999999999988 566557888899999999


Q ss_pred             ccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCC
Q 046050          139 SNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR  218 (779)
Q Consensus       139 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~  218 (779)
                      ++|++++                          ++...+..+.+|++|++++|.+....+..++.+++|++|++++|.++
T Consensus        84 ~~n~l~~--------------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  137 (570)
T 2z63_A           84 TGNPIQS--------------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (570)
T ss_dssp             TTCCCCE--------------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCc--------------------------cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence            9888762                          22223344446666666666665444444556666666666666655


Q ss_pred             C-cCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCc----cEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCc
Q 046050          219 G-EFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQL----TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG  293 (779)
Q Consensus       219 ~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~  293 (779)
                      + .+|..+ +++++|++|++++|++++..+..+..+++|    +.+++++|.++ .++...+... +|+.|++++|....
T Consensus       138 ~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~  214 (570)
T 2z63_A          138 SFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSL  214 (570)
T ss_dssp             CCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCT
T ss_pred             eecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccc
Confidence            3 244443 455566666666665555544444444444    45555555555 2333333212 44444444442211


Q ss_pred             ccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcC------ccccCccccCCC--CCCEEEccCC-
Q 046050          294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQF------TGGIPENLLNCS--LLGGLYLSDN-  364 (779)
Q Consensus       294 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-  364 (779)
                                                ...+..+..++.++.+.+....+      .......+.+++  .++.++++++ 
T Consensus       215 --------------------------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          215 --------------------------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             --------------------------THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             --------------------------cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence                                      12233344445544444332211      111112222222  3677888877 


Q ss_pred             ccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhh
Q 046050          365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDV  444 (779)
Q Consensus       365 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  444 (779)
                      .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+..
T Consensus       269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~  344 (570)
T 2z63_A          269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEV  344 (570)
T ss_dssp             EEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCC
T ss_pred             hhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccc
Confidence            777788999999999999999999998 678888888 9999999999998 4443 35789999999999988776653


Q ss_pred             HhhcceEEEccCccccCcC--chhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050          445 FGDILVTLDLSYNRFSGRI--PNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE  522 (779)
Q Consensus       445 ~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~  522 (779)
                      ....|++|++++|++++..  +..+..+++|++|++++|++.+..+. +..+++|+.|++++|++.+..|...+      
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~------  417 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF------  417 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT------
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh------
Confidence            3334999999999998654  78899999999999999999976555 99999999999999999865553221      


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc
Q 046050          523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN  602 (779)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  602 (779)
                                                                          ..+++|+.|++++|.+++..|..+..++
T Consensus       418 ----------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          418 ----------------------------------------------------LSLRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             ----------------------------------------------------TTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ----------------------------------------------------hcCCCCCEEeCcCCcccccchhhhhcCC
Confidence                                                                1157899999999999999999999999


Q ss_pred             cCcEEEcCCCcCC-ccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcc
Q 046050          603 MIRALNLSHNNLM-GTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSY  681 (779)
Q Consensus       603 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~  681 (779)
                      +|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..+..+..++.+.+
T Consensus       446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence            9999999999998 679999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             cCCCCCCCCCC
Q 046050          682 DGNSLLCGQPL  692 (779)
Q Consensus       682 ~~N~~lc~~~l  692 (779)
                      .+|++.|.|+.
T Consensus       526 ~~N~~~~~~~~  536 (570)
T 2z63_A          526 HTNPWDCSCPR  536 (570)
T ss_dssp             CSSCBCCCTTT
T ss_pred             cCCcccCCCcc
Confidence            99999998864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.6e-46  Score=421.78  Aligned_cols=489  Identities=15%  Similarity=0.142  Sum_probs=346.8

Q ss_pred             CCCCcEEeCCCCccc-cC--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEcc
Q 046050           14 FPNLETLELRDYHLE-LL--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIG   90 (779)
Q Consensus        14 ~~~L~~L~Ls~~~~~-~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls   90 (779)
                      |+...+.|++++.++ +.  -.++|++|++++|++++..+.+|..+++|++|++++|++.+..+ ..++.+++|++|+++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECT
T ss_pred             CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECC
Confidence            555666788887763 11  24789999999999998888999999999999999999976655 479999999999999


Q ss_pred             CcccccccChhccCCCCCCEEeCCCCcCcc-cCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCcee
Q 046050           91 YNNIGGTLPWCLVNMTSLRILDIASNQITG-NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLF  169 (779)
Q Consensus        91 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~  169 (779)
                      +|.+++..+..|+++++|++|++++|++++ .+|. .++.+++|++|++++|.+.+.++..                   
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~-------------------  142 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRI-------------------  142 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT-------------------
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHh-------------------
Confidence            999998888889999999999999999984 2344 7899999999999999854444433                   


Q ss_pred             eecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccC--C
Q 046050          170 VEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFF--Q  247 (779)
Q Consensus       170 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~  247 (779)
                            .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.++++.+++|++|++++|++.+..  +
T Consensus       143 ------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  215 (549)
T 2z81_A          143 ------DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP  215 (549)
T ss_dssp             ------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred             ------hhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc
Confidence                  3444557777777778877778888889999999999999887 778877778899999999999988752  1


Q ss_pred             -CCCCCCCCccEEEccCCCCCcCCchhhh---hcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccc
Q 046050          248 -MPVNPLKQLTTIDVSKNFIQGHIPTGIG---AFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIF  323 (779)
Q Consensus       248 -~~l~~l~~L~~L~Ls~n~l~~~i~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  323 (779)
                       .....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+...-..                     ...
T Consensus       216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------------~~~  274 (549)
T 2z81_A          216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------------SES  274 (549)
T ss_dssp             CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------------CTT
T ss_pred             cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------------cch
Confidence             2234577888899988888755444432   235678888888877654211000                     000


Q ss_pred             ccccCCCCCCEEEccCCcCccc-----cCccccCCCCCCEEEccCCccCCCcchhh-hCCCCCceEEccCCCCCCCcch-
Q 046050          324 SRSFNLTNLVTLQLDANQFTGG-----IPENLLNCSLLGGLYLSDNHISGKIPKWL-GNLSNLVDIIMPNNHLEGPIPA-  396 (779)
Q Consensus       324 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-  396 (779)
                      ..+..+++|+.|++.++.+...     .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+..|. 
T Consensus       275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~  353 (549)
T 2z81_A          275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN  353 (549)
T ss_dssp             TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc
Confidence            1122344555555555543311     1111223356677777777766 444444 4567777777777777655432 


Q ss_pred             --hhcCCCCCCEEEccCccCcccCC--cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCC
Q 046050          397 --NLCKLNFLTVLDLEVNNISGSLP--SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLS  471 (779)
Q Consensus       397 --~~~~l~~L~~L~L~~n~l~~~~~--~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  471 (779)
                        .+..+++|+.|++++|++++..+  ..+. +++                      |++|++++|+++ .+|..+..++
T Consensus       354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~----------------------L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN----------------------LTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT----------------------CCEEECTTCCCC-CCCSCCCCCT
T ss_pred             hhhhhccccCcEEEccCCcccccccchhhhhcCCC----------------------CCEEECCCCCCc-cCChhhcccc
Confidence              25566777777777777664321  1111 333                      344444444444 3455566677


Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050          472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG  551 (779)
Q Consensus       472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (779)
                      +|++|++++|++++ +|..+  .++|++|++++|++++.. .                                      
T Consensus       411 ~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~--------------------------------------  448 (549)
T 2z81_A          411 KMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-L--------------------------------------  448 (549)
T ss_dssp             TCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-C--------------------------------------
T ss_pred             cccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-c--------------------------------------
Confidence            77777777777763 33322  257888888888887421 1                                      


Q ss_pred             CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEE
Q 046050          552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL  631 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  631 (779)
                                              .++.|++||+++|+++ .+|. ...+++|+.|+|++|++++.+|..|..+++|+.|
T Consensus       449 ------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          449 ------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI  502 (549)
T ss_dssp             ------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             ------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence                                    0456888888888888 6665 4678999999999999999899999999999999


Q ss_pred             ECCCCcCcCCCc
Q 046050          632 DLSYNMLQGKIP  643 (779)
Q Consensus       632 ~Ls~N~l~~~~p  643 (779)
                      ++++|++++..|
T Consensus       503 ~l~~N~~~~~~~  514 (549)
T 2z81_A          503 WLHTNPWDCSCP  514 (549)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EecCCCccCCCc
Confidence            999999998877

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-47  Score=438.25  Aligned_cols=374  Identities=20%  Similarity=0.217  Sum_probs=236.0

Q ss_pred             CCcCCCCcchhhhCCCCCCEEEccCCCCCCc-----------------Cchhhhh--cCCCCCEEECcCCcccccCCCCC
Q 046050          190 GCRCDFTFPRFLYYQHELRYVDLSHMNLRGE-----------------FPNWLLE--NNKELETLLLANNSLSGFFQMPV  250 (779)
Q Consensus       190 ~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l  250 (779)
                      .|++++ +|..++++++|++|++++|.+++.                 +|..+ +  ++++|++|++++|++.+..|..+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHH
Confidence            456666 777777777788888877777753                 44443 3  45555555555555555555555


Q ss_pred             CCCCCccEEEccCCC-CCc-CCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccc--cc
Q 046050          251 NPLKQLTTIDVSKNF-IQG-HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS--RS  326 (779)
Q Consensus       251 ~~l~~L~~L~Ls~n~-l~~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~  326 (779)
                      ..+++|++|++++|+ +++ .+|..++. +                     .....+++|++|++++|.++ .+|.  .+
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L---------------------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQA-L---------------------ADAPVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHH-H---------------------HHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHh-h---------------------hccccCCCCCEEECCCCcCC-ccCchhhh
Confidence            555555555555554 544 44444443 1                     00112235666666666666 5555  66


Q ss_pred             cCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCC-CceEEccCCCCCCCcchhhcCCC--C
Q 046050          327 FNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN-LVDIIMPNNHLEGPIPANLCKLN--F  403 (779)
Q Consensus       327 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~  403 (779)
                      +.+++|++|++++|++++.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  +
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            677777777777777776666 6677777777777777777 66666777777 777777777776 5566555543  6


Q ss_pred             CCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcC
Q 046050          404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNL  483 (779)
Q Consensus       404 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  483 (779)
                      |+.|++++|.+++..|..+.......+.              ...|+.|++++|++++..+..+..+++|++|+|++|++
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~--------------~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFK--------------GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCC--------------CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             cCEEECcCCcCCCcchhhhccccccccc--------------CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence            7777777777766655544310000000              00155556666666543344455577777777777777


Q ss_pred             cccCcccccCCC-------CCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCc
Q 046050          484 EGEVPVQLCLLK-------QLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMR  556 (779)
Q Consensus       484 ~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (779)
                      +...+..+....       +|+.|++++|+++ .+|..++.                                       
T Consensus       470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------  509 (636)
T 4eco_A          470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------------  509 (636)
T ss_dssp             SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---------------------------------------
T ss_pred             CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---------------------------------------
Confidence            733333333322       7778888888777 56665510                                       


Q ss_pred             ccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEc------CCCcCCccCchhhhCCCCCCE
Q 046050          557 KEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNL------SHNNLMGTIPSTFSHLSQIES  630 (779)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~  630 (779)
                                        ..+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+.++++|+.
T Consensus       510 ------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~  570 (636)
T 4eco_A          510 ------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ  570 (636)
T ss_dssp             ------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             ------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence                              014567778888888875 7777777888888888      557778888888888888888


Q ss_pred             EECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050          631 LDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       631 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      |+|++|++ +.+|..+.  ++|++|++++|++.+.-+
T Consensus       571 L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          571 LQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             EECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             EECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence            88888888 47777655  788888888888775443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.3e-44  Score=415.34  Aligned_cols=514  Identities=18%  Similarity=0.167  Sum_probs=281.9

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      ++++|+|++|++++..+ .+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+++ .+|.+.|+++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence            45555555555543322 34555555555555555555555555555555555555555555 45544555555555555


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMN  216 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~  216 (779)
                      +++|++++                          ++...+..+.+|++|++++|.+.. ..|..+..+++|++|++++|+
T Consensus       131 Ls~N~l~~--------------------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          131 AVETNLAS--------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CTTSCCCC--------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCC--------------------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            55555542                          233334445566666666666654 357788888999999999999


Q ss_pred             CCCcCchhhhhcCC----CCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050          217 LRGEFPNWLLENNK----ELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN  292 (779)
Q Consensus       217 l~~~~~~~~~~~~~----~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~  292 (779)
                      +++..+..+ +.+.    ....++++.|.+..+.+..+ ....++.+++++|.....++...+..++.++...+..+...
T Consensus       185 l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  262 (635)
T 4g8a_A          185 IQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  262 (635)
T ss_dssp             CCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             ccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence            885545443 3333    34578889998887665544 34567788888887664555555555677776665443322


Q ss_pred             ccc--Cc-ccccccCCccccEEEccCCcCC---ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCcc
Q 046050          293 GSI--PC-SLHMTMGCFSLQILALSNNSLQ---GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI  366 (779)
Q Consensus       293 ~~~--~~-~~~~~~~~~~L~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  366 (779)
                      ...  .. ..........+...++..+...   ......+....+++.+++.++.+....  .+.....++.|++.+|.+
T Consensus       263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~  340 (635)
T 4g8a_A          263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKF  340 (635)
T ss_dssp             TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEE
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccc
Confidence            111  00 0011222234444444443222   122333445667777777777665322  344556777777777777


Q ss_pred             CCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC--Cc-CcCCCcccEEEccCCcCcccchh
Q 046050          367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL--PS-CFSSWLLTQVHLSRNKIEGQLED  443 (779)
Q Consensus       367 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~~~~L~~L~l~~n~l~~~~~~  443 (779)
                      .+..+.   .+..|+.+++..|.....  .....+++|+.+++++|.+....  +. .+...+++.+++..+........
T Consensus       341 ~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  415 (635)
T 4g8a_A          341 GQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN  415 (635)
T ss_dssp             SSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred             cCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence            644332   355677777777766532  22345677777777777665322  11 12245566666666655443322


Q ss_pred             hHh-hcceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc-CCchhhhhcc
Q 046050          444 VFG-DILVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT-IPSCLYKTAL  520 (779)
Q Consensus       444 ~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~l  520 (779)
                      ... ..++.++++++......+ ..+..+++++.+++++|.+.+..+..+..++.|+.|++++|++.+. .|..+     
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~-----  490 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-----  490 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-----
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh-----
Confidence            111 115555555554443322 3344555555555555555555555555555555555555553322 22211     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccC
Q 046050          521 GEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGY  600 (779)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  600 (779)
                                                                            ..+++|+.|||++|++++..|..|++
T Consensus       491 ------------------------------------------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          491 ------------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             ------------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ------------------------------------------------------hhccccCEEECCCCccCCcChHHHcC
Confidence                                                                  01344555555555555555555555


Q ss_pred             cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhc-ccCcEEEccCCcCcccCC
Q 046050          601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL-YALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p  667 (779)
                      +++|++|+|++|+|++..|..|.++++|+.|||++|++++..|..+..+ ++|++|++++|+++|.|.
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            5555555555555555555555555555555555555555555555554 355555555555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.2e-44  Score=411.99  Aligned_cols=529  Identities=19%  Similarity=0.155  Sum_probs=363.7

Q ss_pred             EEeCCCCccc-c-CCC-CCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccc
Q 046050           19 TLELRDYHLE-L-LNF-TNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIG   95 (779)
Q Consensus        19 ~L~Ls~~~~~-~-~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~   95 (779)
                      +.|-++-.++ + .++ +++++|+|++|+++...+.+|.++++|++|+|++|.+.+..+ .+|.++++|++|+|++|+++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCC
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCC
Confidence            4455554442 2 234 379999999999998888899999999999999999975544 57899999999999999999


Q ss_pred             cccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccC
Q 046050           96 GTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESH  175 (779)
Q Consensus        96 ~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  175 (779)
                      +..+..|.++++|++|+|++|+++ .++...|+++++|++|++++|.+++......+..+++|++|++++|.+....+ .
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~  191 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-T  191 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-G
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-c
Confidence            877788999999999999999999 77776799999999999999998753334566778888888888777654322 2


Q ss_pred             CCCCCc----cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCccc------cc
Q 046050          176 SLTPKF----QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLS------GF  245 (779)
Q Consensus       176 ~~~~~~----~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~------~~  245 (779)
                      .+..+.    ....++++.|.+....+..+ ....++.+++++|.....++...+..+..++...+..+...      ..
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            222211    23456666666654333333 33345666776665554444444555666655554332211      11


Q ss_pred             CCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCcccccc
Q 046050          246 FQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR  325 (779)
Q Consensus       246 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  325 (779)
                      ....+..+..+...++                         ..+.................+++.+.+.++.+...  ..
T Consensus       271 ~~~~~~~~~~l~~~~l-------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~  323 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEF-------------------------RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KD  323 (635)
T ss_dssp             CTTTTGGGGGSEEEEE-------------------------EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GG
T ss_pred             cccccccccchhhhhh-------------------------hhhhhcccccchhhhhhhhcccccccccccccccc--cc
Confidence            1112222223333333                         22222111111111122223555666666555432  22


Q ss_pred             ccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCC--CcchhhcCCCC
Q 046050          326 SFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG--PIPANLCKLNF  403 (779)
Q Consensus       326 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  403 (779)
                      +.....++.|++.+|.+....+   ..++.|+.+++..|.+...  .....+++|+.+++++|.+..  ..+..+..+.+
T Consensus       324 ~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  398 (635)
T 4g8a_A          324 FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS  398 (635)
T ss_dssp             GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred             cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhh
Confidence            3345566777777766653322   2345566777777666532  223456777777777776642  23455566777


Q ss_pred             CCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchh-hHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccC
Q 046050          404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLED-VFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN  480 (779)
Q Consensus       404 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  480 (779)
                      |+.++++.+.+....+....++.|+.+++..+......+. .+...  ++.+++++|.+.+..+..+..++++++|++++
T Consensus       399 L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~  478 (635)
T 4g8a_A          399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  478 (635)
T ss_dssp             CCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             hhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            7777777777665555544567777777777665544432 23333  88889999999888888899999999999999


Q ss_pred             CcC-cccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc
Q 046050          481 NNL-EGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEE  559 (779)
Q Consensus       481 n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (779)
                      |++ .+..|..|..+++|++|+|++|++++..|..+       +                                    
T Consensus       479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f-------~------------------------------------  515 (635)
T 4g8a_A          479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-------N------------------------------------  515 (635)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-------T------------------------------------
T ss_pred             cccccccCchhhhhccccCEEECCCCccCCcChHHH-------c------------------------------------
Confidence            985 44678899999999999999999997666655       1                                    


Q ss_pred             eEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC-CCCCEEECCCCcC
Q 046050          560 SVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL-SQIESLDLSYNML  638 (779)
Q Consensus       560 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l  638 (779)
                                      .+++|++|+|++|+|++..|..|+.+++|++|||++|++++..|+.|..+ ++|+.|+|++|++
T Consensus       516 ----------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          516 ----------------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             ----------------TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             ----------------CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence                            15789999999999998889999999999999999999999999999998 6899999999999


Q ss_pred             cCCC
Q 046050          639 QGKI  642 (779)
Q Consensus       639 ~~~~  642 (779)
                      ++.-
T Consensus       580 ~C~C  583 (635)
T 4g8a_A          580 ACTC  583 (635)
T ss_dssp             CCSG
T ss_pred             cccC
Confidence            8643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-44  Score=419.38  Aligned_cols=401  Identities=18%  Similarity=0.186  Sum_probs=265.7

Q ss_pred             CcCCCCcchhhhCCCCCCEEEccCCCCCC-cCchhhhhcCCCCCEEECcCCcccccCCCCCC--CCCCccEEEccCCCCC
Q 046050          191 CRCDFTFPRFLYYQHELRYVDLSHMNLRG-EFPNWLLENNKELETLLLANNSLSGFFQMPVN--PLKQLTTIDVSKNFIQ  267 (779)
Q Consensus       191 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~  267 (779)
                      |.+++ +|..+.++++|++|+|++|.+++ .++...   .      ..+.|...+.+|..++  .+++|++|++++|.+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~  504 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---E------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM  504 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---S------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---c------ccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence            55555 66666666666666666666664 122111   0      0111333345777766  8888888888888887


Q ss_pred             cCCchhhhhcCCCCCEEEccCCc-CCc-ccCcccc----cccCCccccEEEccCCcCCccccc--cccCCCCCCEEEccC
Q 046050          268 GHIPTGIGAFLPRLEHFNISRNV-LNG-SIPCSLH----MTMGCFSLQILALSNNSLQGHIFS--RSFNLTNLVTLQLDA  339 (779)
Q Consensus       268 ~~i~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~----~~~~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~  339 (779)
                      +.+|..+.. +++|+.|++++|+ +++ .+|..+.    ....+++|+.|++++|.++ .+|.  .+..+++|+.|++++
T Consensus       505 ~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~  582 (876)
T 4ecn_A          505 TQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH  582 (876)
T ss_dssp             CSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT
T ss_pred             ccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC
Confidence            788877766 7888888888887 777 6776552    2234457788888888777 6666  777788888888888


Q ss_pred             CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCC-CceEEccCCCCCCCcchhhcCCCC--CCEEEccCccCcc
Q 046050          340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSN-LVDIIMPNNHLEGPIPANLCKLNF--LTVLDLEVNNISG  416 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~  416 (779)
                      |+++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++.+
T Consensus       583 N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          583 NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence            8877 666 7777788888888888887 67777777777 888888888777 66666665543  7777887777776


Q ss_pred             cCCcCc------CCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccc
Q 046050          417 SLPSCF------SSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ  490 (779)
Q Consensus       417 ~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  490 (779)
                      .+|...      ..++                      |+.|++++|+++...+..+..+++|+.|+|++|+++...+..
T Consensus       659 ~ip~l~~~l~~~~~~~----------------------L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~  716 (876)
T 4ecn_A          659 EGRNISCSMDDYKGIN----------------------ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS  716 (876)
T ss_dssp             TSSSCSSCTTTCCCCC----------------------EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred             ccccchhhhccccCCC----------------------cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence            655432      1223                      555556666655332233346667777777777776322222


Q ss_pred             ccC-------CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEE
Q 046050          491 LCL-------LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEF  563 (779)
Q Consensus       491 ~~~-------l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (779)
                      +..       +++|+.|+|++|+++ .+|..++.                                              
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----------------------------------------------  749 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----------------------------------------------  749 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------------------------
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------------------------
Confidence            222       226777777777776 56655410                                              


Q ss_pred             EEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCC------CcCCccCchhhhCCCCCCEEECCCCc
Q 046050          564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSH------NNLMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       564 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                                 ..+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|.++++|+.|+|++|+
T Consensus       750 -----------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          750 -----------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             -----------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             -----------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence                       014567777777777775 677777777777777765      77778888888888888888888888


Q ss_pred             CcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC--CCC
Q 046050          638 LQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC--GQP  691 (779)
Q Consensus       638 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc--~~~  691 (779)
                      + +.+|..+.  ++|+.||+++|++...-+..+..........+.+|+..+  +|+
T Consensus       818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            8 57777655  588888888888875554433222233344555665554  553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=406.66  Aligned_cols=459  Identities=17%  Similarity=0.123  Sum_probs=329.5

Q ss_pred             cEEeCCCCcccc-C--CCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCccc
Q 046050           18 ETLELRDYHLEL-L--NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNI   94 (779)
Q Consensus        18 ~~L~Ls~~~~~~-~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i   94 (779)
                      ++||+++|.++- .  -.++|++|++++|.+++..+.+|..+++|++|++++|++.+..| ..++.+++|++|++++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCce
Confidence            355666665521 0  11456666666666655555556666666666666666544433 3555666666666666666


Q ss_pred             ccccChhccCCCCCCEEeCCCCcCcc-cCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecc
Q 046050           95 GGTLPWCLVNMTSLRILDIASNQITG-NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIE  173 (779)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~Ls~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  173 (779)
                      ++ +|..  .+++|++|++++|++++ .+|. .|+.+++|++|++++|++++    ..+                     
T Consensus        82 ~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~---------------------  132 (520)
T 2z7x_B           82 VK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSV---------------------  132 (520)
T ss_dssp             CE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGG---------------------
T ss_pred             ee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhc---------------------
Confidence            53 3333  55666666666666653 2333 55566666666666665542    122                     


Q ss_pred             cCCCCCCccc--cEEECCCCcC--CCCcchhhhCCC-CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCc-------
Q 046050          174 SHSLTPKFQL--QNISLSGCRC--DFTFPRFLYYQH-ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS-------  241 (779)
Q Consensus       174 ~~~~~~~~~L--~~L~L~~n~~--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------  241 (779)
                          ..+.+|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.       
T Consensus       133 ----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          133 ----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             ----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             ----cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence                223344  7777777777  666777766654 344677888888877777667788888899888886       


Q ss_pred             ccccCCCCCCCCCCccEEEccCCCCCcCCchhhhh--cCCCCCEEEccCCcCCcccCccccc--ccCCccccEEEccCCc
Q 046050          242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGA--FLPRLEHFNISRNVLNGSIPCSLHM--TMGCFSLQILALSNNS  317 (779)
Q Consensus       242 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~L~ls~n~  317 (779)
                      +.+..+ .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|.+++.+|..+..  ...+++|+.+++++|.
T Consensus       209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            555544 6788889999999988877543333221  1468999999999998888876621  1456689999999998


Q ss_pred             CCcccc-ccccCC---CCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCC-
Q 046050          318 LQGHIF-SRSFNL---TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEG-  392 (779)
Q Consensus       318 l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-  392 (779)
                      +  .+| ..+..+   ++|+.|++++|.+....  .+..+++|++|++++|++++..|..++.+++|++|++++|++++ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            8  344 344433   67999999999987432  13688999999999999998889999999999999999999986 


Q ss_pred             -CcchhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhc
Q 046050          393 -PIPANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDK  469 (779)
Q Consensus       393 -~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  469 (779)
                       ..|..+..+++|++|++++|.+++.+| ..+. +++|++|++++|++++..+..+...|+.|++++|+++ .+|..+..
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhc
Confidence             456789999999999999999998444 3344 7899999999999988777666556999999999999 67877889


Q ss_pred             CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhh
Q 046050          470 LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY  516 (779)
Q Consensus       470 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  516 (779)
                      +++|++|++++|++++..+..+..+++|++|++++|++++..+...+
T Consensus       443 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             CCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            99999999999999965445599999999999999999987664443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=404.72  Aligned_cols=445  Identities=20%  Similarity=0.187  Sum_probs=248.4

Q ss_pred             CCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEE
Q 046050           82 VHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKF  161 (779)
Q Consensus        82 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  161 (779)
                      ++|++|++++|.+++..|..|.++++|++|+|++|+++ .+++..|+.+++|++|++++|+++ .++.            
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------------   86 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISC------------   86 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEEC------------
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCc------------
Confidence            44455555555544444444445555555555555554 222224444555555555555443 1111            


Q ss_pred             ECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCC--CEEECc
Q 046050          162 YGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKEL--ETLLLA  238 (779)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L--~~L~L~  238 (779)
                                   .   .+.+|++|++++|.+.+ .+|..++.+++|++|++++|.+++.    .+..+++|  ++|+++
T Consensus        87 -------------~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           87 -------------H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV  146 (520)
T ss_dssp             -------------C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE
T ss_pred             -------------c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee
Confidence                         0   12234444444444443 3566777777777777777777631    13455666  777777


Q ss_pred             CCcc--cccCCCCCCCCC-CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccC
Q 046050          239 NNSL--SGFFQMPVNPLK-QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN  315 (779)
Q Consensus       239 ~n~~--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~  315 (779)
                      +|.+  .+..+..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.-.....                   
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------  207 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-------------------  207 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-------------------
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-------------------
Confidence            7776  555555554443 233456666666555554444445555555555554100000                   


Q ss_pred             CcCCccccccccCCCCCCEEEccCCcCccccCccc---cCCCCCCEEEccCCccCCCcchhh-----hCCCCCceEEccC
Q 046050          316 NSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENL---LNCSLLGGLYLSDNHISGKIPKWL-----GNLSNLVDIIMPN  387 (779)
Q Consensus       316 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~  387 (779)
                       .+.+.++ .+..+++|+.|++++|.+.+..+..+   ...++|++|++++|++++.+|..+     ..+++|+.+++++
T Consensus       208 -~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~  285 (520)
T 2z7x_B          208 -YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS  285 (520)
T ss_dssp             -HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred             -eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence             0222222 33444455555555444432211111   012355555555555555555544     5555666666666


Q ss_pred             CCCCCCcc-hhhcCC---CCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcC
Q 046050          388 NHLEGPIP-ANLCKL---NFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI  463 (779)
Q Consensus       388 n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~  463 (779)
                      |.+  .+| ..+..+   .+|+.|++++|.+..... ...+++|++|++++                      |++++..
T Consensus       286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~----------------------n~l~~~~  340 (520)
T 2z7x_B          286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN----------------------NLLTDTV  340 (520)
T ss_dssp             CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS----------------------SCCCTTT
T ss_pred             cce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeEC----------------------CccChhh
Confidence            655  222 333322   456666666666543221 01233343333333                      3333344


Q ss_pred             chhhhcCCCCcEEEccCCcCcc--cCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCc
Q 046050          464 PNWIDKLSHLSYLILANNNLEG--EVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSP  541 (779)
Q Consensus       464 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  541 (779)
                      |..+..+++|++|++++|++++  ..|..+..+++|++|++++|++++.+|...+                         
T Consensus       341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-------------------------  395 (520)
T 2z7x_B          341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-------------------------  395 (520)
T ss_dssp             TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-------------------------
T ss_pred             hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-------------------------
Confidence            5556666777777777777765  3455667777777777777777654554321                         


Q ss_pred             ccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchh
Q 046050          542 AAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPST  621 (779)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  621 (779)
                                                       ..++.|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..
T Consensus       396 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~  439 (520)
T 2z7x_B          396 ---------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ  439 (520)
T ss_dssp             ---------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred             ---------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence                                             0135677777777777766666554  78999999999998 78887


Q ss_pred             hhCCCCCCEEECCCCcCcCCCch-hhhhcccCcEEEccCCcCcccCCC
Q 046050          622 FSHLSQIESLDLSYNMLQGKIPT-QLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       622 ~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      +..+++|+.|++++|++++ +|. .+..+++|++|++++|+++|.|+.
T Consensus       440 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          440 VVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            7899999999999999994 555 488899999999999999988874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-45  Score=422.24  Aligned_cols=441  Identities=17%  Similarity=0.208  Sum_probs=340.1

Q ss_pred             cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCC------CC------cCchhhhhcCCCCCEEECcCCcccccCCCC
Q 046050          182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNL------RG------EFPNWLLENNKELETLLLANNSLSGFFQMP  249 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l------~~------~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  249 (779)
                      +++.|+|+++.+.|.+|..++++++|++|++++|.+      .+      .+|...   +..++ +++++|.+.+..+..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            788888888888888888888888888888888865      22      333322   12233 444444433332222


Q ss_pred             CC-------------------CCCCccEEEcc--CCCCCcCCchhhhhcCCCCCEEEccCCcCCcc--------------
Q 046050          250 VN-------------------PLKQLTTIDVS--KNFIQGHIPTGIGAFLPRLEHFNISRNVLNGS--------------  294 (779)
Q Consensus       250 l~-------------------~l~~L~~L~Ls--~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~--------------  294 (779)
                      +.                   ....++.+.+.  .|.+++ +|..+.. +++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence            22                   11122222222  467775 7877766 78888888888888874              


Q ss_pred             ---cCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCc-Ccc-ccCccccCC------CCCCEEEccC
Q 046050          295 ---IPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ-FTG-GIPENLLNC------SLLGGLYLSD  363 (779)
Q Consensus       295 ---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~L~~  363 (779)
                         +|..+. +.++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+      ++|++|++++
T Consensus       236 ~~~ip~~l~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCC-GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhh-hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               665543 0144588888888888888888888888888888888887 877 677777665      8888899988


Q ss_pred             CccCCCcch--hhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCc-ccEEEccCCcCcc
Q 046050          364 NHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWL-LTQVHLSRNKIEG  439 (779)
Q Consensus       364 n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~  439 (779)
                      |+++ .+|.  .++++++|++|++++|.++|.+| .+..+++|+.|++++|+++ .+|..+. +++ |++|++++|.++.
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~  391 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY  391 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc
Confidence            8888 6777  88888889999998888887778 7888888889999888888 4444444 777 8899999888885


Q ss_pred             cchhhHhh----cceEEEccCccccCcCchhhh-------cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          440 QLEDVFGD----ILVTLDLSYNRFSGRIPNWID-------KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       440 ~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      ++. .+..    .|+.|++++|++++..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       392 lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            443 3322    389999999999988888887       7889999999999999666666778999999999999998


Q ss_pred             ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050          509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN  588 (779)
Q Consensus       509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  588 (779)
                       .+|...+....                                                   .....++.|+.|+|++|
T Consensus       471 -~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          471 -EIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             -BCCSSSSEETT---------------------------------------------------EECTTGGGCCEEECCSS
T ss_pred             -CcCHHHhcccc---------------------------------------------------ccccccCCccEEECcCC
Confidence             77765522100                                                   00011358999999999


Q ss_pred             ccCCCCCcccc--CcccCcEEEcCCCcCCccCchhhhCCCCCCEEEC------CCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          589 KLTGEIPFQIG--YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDL------SYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       589 ~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      +++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|      ++|++.+.+|..+..+++|++|++++|
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            999 7888887  99999999999999997 8999999999999999      568889999999999999999999999


Q ss_pred             cCcccCCCCCCcCCCCCCCcccCCCCCCCC
Q 046050          661 NLSGKVPDRVGQFATFTENSYDGNSLLCGQ  690 (779)
Q Consensus       661 ~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~  690 (779)
                      ++ +.+|..+.  ..++.+.+++|+..|-.
T Consensus       577 ~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          577 DI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            99 68898644  78999999999998854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-44  Score=416.75  Aligned_cols=361  Identities=19%  Similarity=0.210  Sum_probs=278.2

Q ss_pred             CCCCcCCchhhhhcCCCCCEEEccCCcCCc-----------------ccCcccccccCCccccEEEccCCcCCccccccc
Q 046050          264 NFIQGHIPTGIGAFLPRLEHFNISRNVLNG-----------------SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRS  326 (779)
Q Consensus       264 n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  326 (779)
                      |.+++ +|..+.. +++|+.|++++|.+++                 .+|..+. +.++++|+.|++++|.+.+.+|..+
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~-f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC-GGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhh-hccCCCCCEEECcCCCCCccChHHH
Confidence            66664 7776665 6777777777777776                 2555442 1144578888888888777888888


Q ss_pred             cCCCCCCEEEccCCc-Ccc-ccCccccCC-------CCCCEEEccCCccCCCcch--hhhCCCCCceEEccCCCCCCCcc
Q 046050          327 FNLTNLVTLQLDANQ-FTG-GIPENLLNC-------SLLGGLYLSDNHISGKIPK--WLGNLSNLVDIIMPNNHLEGPIP  395 (779)
Q Consensus       327 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~  395 (779)
                      .++++|+.|++++|+ +++ .+|..+..+       ++|++|++++|.++ .+|.  .+.++++|+.|++++|.++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            888888888888887 776 566544443       48888888888888 6776  7888888888888888887 666


Q ss_pred             hhhcCCCCCCEEEccCccCcccCCcCcC-CCc-ccEEEccCCcCcccchhhHhhc----ceEEEccCccccCcCchhh--
Q 046050          396 ANLCKLNFLTVLDLEVNNISGSLPSCFS-SWL-LTQVHLSRNKIEGQLEDVFGDI----LVTLDLSYNRFSGRIPNWI--  467 (779)
Q Consensus       396 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~~~~~~~~~~----L~~L~L~~n~l~~~~~~~~--  467 (779)
                       .|..+++|+.|++++|+++ .+|..+. +++ |+.|++++|.++.++ ..+...    |+.|++++|++.+.+|...  
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             7788888888888888887 4454444 666 888888888887443 333322    8888888888887665322  


Q ss_pred             -h--cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050          468 -D--KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG  544 (779)
Q Consensus       468 -~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  544 (779)
                       .  .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|...+....     .                  
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----~------------------  722 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-----G------------------  722 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-----S------------------
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-----c------------------
Confidence             2  3458999999999999555555568999999999999998 77776522100     0                  


Q ss_pred             cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCcccc--CcccCcEEEcCCCcCCccCchhh
Q 046050          545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG--YLNMIRALNLSHNNLMGTIPSTF  622 (779)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~  622 (779)
                                                  ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+
T Consensus       723 ----------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          723 ----------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             ----------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             ----------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence                                        0011458999999999999 8888887  99999999999999997 79899


Q ss_pred             hCCCCCCEEECCC------CcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCC
Q 046050          623 SHLSQIESLDLSY------NMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCG  689 (779)
Q Consensus       623 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~  689 (779)
                      .++++|+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|..+.  ..++.+.+++|+...-
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            9999999999977      889999999999999999999999999 78998644  6889999999997653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-41  Score=385.65  Aligned_cols=462  Identities=20%  Similarity=0.172  Sum_probs=271.0

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      ..+++++++|.+++ +|. .+.  ++|++|++++|.+++..+..|.++++|++|+|++|+++ .++++.|+.+++|++|+
T Consensus        32 ~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             -CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEE
Confidence            34666666666653 342 232  56666677666666655566666666777777766666 34333566666666666


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCC-CcchhhhCCCCCCEEEccCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDF-TFPRFLYYQHELRYVDLSHMN  216 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~L~~L~Ls~n~  216 (779)
                      +++|+++ .++..                            .+.+|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus       107 Ls~N~l~-~lp~~----------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          107 VSHNRLQ-NISCC----------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CTTSCCC-EECSC----------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCCCcCC-ccCcc----------------------------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            6666665 22211                            12244444444454443 234566666667777777666


Q ss_pred             CCCcCchhhhhcCCCC--CEEECcCCcc--cccCCCCCCCCC-CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcC
Q 046050          217 LRGEFPNWLLENNKEL--ETLLLANNSL--SGFFQMPVNPLK-QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVL  291 (779)
Q Consensus       217 l~~~~~~~~~~~~~~L--~~L~L~~n~~--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l  291 (779)
                      +++..    +..+++|  ++|++++|.+  ++..+..+..+. +.-.+++++|.+.+.++...+..+++|+.+++++|..
T Consensus       158 l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          158 FRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             CCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             cccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence            65311    2333444  6666666665  444444443332 1113355555554444433333334444444444421


Q ss_pred             CcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccc----cCccccCCCCCCEEEccCCccC
Q 046050          292 NGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGG----IPENLLNCSLLGGLYLSDNHIS  367 (779)
Q Consensus       292 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~  367 (779)
                      .-.                      .+. .....+..+++|+.++++++.+.+.    .+..+ ..++|++|++++|.++
T Consensus       234 ~~~----------------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~  289 (562)
T 3a79_B          234 NCQ----------------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTIT  289 (562)
T ss_dssp             THH----------------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEEC
T ss_pred             ccc----------------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEee
Confidence            000                      011 1112344555555555555544321    11111 2236666666666666


Q ss_pred             CCcchhh-----hCCCCCceEEccCCCCCCCcc-hhhc---CCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCc
Q 046050          368 GKIPKWL-----GNLSNLVDIIMPNNHLEGPIP-ANLC---KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIE  438 (779)
Q Consensus       368 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  438 (779)
                      +.+|..+     ..++.|+.++++.+.+  .+| ..+.   ...+|+.|++++|.+..... ...+++|++|+++     
T Consensus       290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~-----  361 (562)
T 3a79_B          290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFT-----  361 (562)
T ss_dssp             SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECC-----
T ss_pred             ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECC-----
Confidence            6666555     5555555666666655  223 2222   22567777777777653221 0123444444444     


Q ss_pred             ccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccC--cccccCCCCCCEEEccCCcCcccCCchhh
Q 046050          439 GQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEV--PVQLCLLKQLQLIDLSHNNLSGTIPSCLY  516 (779)
Q Consensus       439 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  516 (779)
                                       +|++++..|..+..+++|++|++++|++++..  |..+..+++|++|++++|++++.+|...+
T Consensus       362 -----------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          362 -----------------QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             -----------------SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             -----------------CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence                             44444455666677778888888888877633  45677788888888888888765655321


Q ss_pred             hhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCc
Q 046050          517 KTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPF  596 (779)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  596 (779)
                      .                                                          .++.|+.|++++|++++.+|.
T Consensus       425 ~----------------------------------------------------------~l~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          425 A----------------------------------------------------------WAESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             C----------------------------------------------------------CCTTCCEEECCSSCCCGGGGS
T ss_pred             c----------------------------------------------------------CcccCCEEECCCCCCCcchhh
Confidence            0                                                          145678888888888776666


Q ss_pred             cccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchh-hhhcccCcEEEccCCcCcccCCC
Q 046050          597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       597 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      .+.  ++|+.|+|++|+++ .+|..+.++++|+.|+|++|+++ .+|.. +..+++|++|++++|+++|.||.
T Consensus       447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            554  78999999999998 67777779999999999999999 45554 88999999999999999998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-41  Score=384.72  Aligned_cols=463  Identities=19%  Similarity=0.137  Sum_probs=337.8

Q ss_pred             CccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeC
Q 046050           34 NLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDI  113 (779)
Q Consensus        34 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  113 (779)
                      ..+++++++++++. +|..+.  ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.+|.++++|++|+|
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34677777777764 343332  577777777777754433 46777777777777777777766777777777777777


Q ss_pred             CCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccc--cEEECCCC
Q 046050          114 ASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQL--QNISLSGC  191 (779)
Q Consensus       114 s~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L--~~L~L~~n  191 (779)
                      ++|+++ .+|..   .+++|++|++++|++++......+.++++|++|++++|.+..    ..+..+.+|  ++|++++|
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEES
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecc
Confidence            777777 67662   677777777777777632212466777777777777776543    223333444  88888888


Q ss_pred             cC--CCCcchhhhCCC-CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCc-----ccccCCCCCCCCCCccEEEccC
Q 046050          192 RC--DFTFPRFLYYQH-ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS-----LSGFFQMPVNPLKQLTTIDVSK  263 (779)
Q Consensus       192 ~~--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-----~~~~~~~~l~~l~~L~~L~Ls~  263 (779)
                      .+  .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+     +.+. ...+..+++|+.+++++
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence            88  777777776654 122567888888877777666778889999998885     2221 12456678888888888


Q ss_pred             CCCCcC----CchhhhhcCCCCCEEEccCCcCCcccCcccc--cccCCccccEEEccCCcCCcccc-cccc---CCCCCC
Q 046050          264 NFIQGH----IPTGIGAFLPRLEHFNISRNVLNGSIPCSLH--MTMGCFSLQILALSNNSLQGHIF-SRSF---NLTNLV  333 (779)
Q Consensus       264 n~l~~~----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~-~~~~---~l~~L~  333 (779)
                      +.+.+.    ++....  .++|++|++++|.+++.+|..+.  ....+..|+.++++.+.+  .+| ..+.   ...+|+
T Consensus       259 ~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          259 IETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred             CcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence            776632    222222  35899999999999888887651  123444666666666666  223 2222   236799


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcCCCCCCEEEccC
Q 046050          334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCKLNFLTVLDLEV  411 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~  411 (779)
                      +|++++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++.  .|..+..+++|+.|++++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            9999999886322  126789999999999999988899999999999999999999863  456789999999999999


Q ss_pred             ccCcccCC-cCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc
Q 046050          412 NNISGSLP-SCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV  489 (779)
Q Consensus       412 n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  489 (779)
                      |++++.+| ..+. +++|++|++++|++++..+..+...|+.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence            99998444 4454 7899999999999988776665556999999999999 5677677999999999999999965555


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhh
Q 046050          490 QLCLLKQLQLIDLSHNNLSGTIPSCLY  516 (779)
Q Consensus       490 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~  516 (779)
                      .+..+++|+.|++++|++.+..|...+
T Consensus       492 ~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            599999999999999999987765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-39  Score=359.84  Aligned_cols=381  Identities=19%  Similarity=0.154  Sum_probs=237.8

Q ss_pred             EEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccC
Q 046050          209 YVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR  288 (779)
Q Consensus       209 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~  288 (779)
                      .++.+++.++ .+|. +   .++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555555 5554 2   245666666666666665666666666666666666665455444444455566666655


Q ss_pred             CcCCcccCcccccccCCccccEEEccCCcCCcccccc--ccCCCCCCEEEccCCcCccccCcc-ccCCCCCCEEEccCCc
Q 046050          289 NVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR--SFNLTNLVTLQLDANQFTGGIPEN-LLNCSLLGGLYLSDNH  365 (779)
Q Consensus       289 n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~  365 (779)
                      |.+++..|..+.   ++++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +.++++|++|++++|+
T Consensus        89 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           89 NQFLQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCEECTTTTT---TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CccCccChhhcc---CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            555544443331   2224555555555554433222  445555555555555555444443 4555555555555555


Q ss_pred             cCCCcchhhhCC--CCCceEEccCCCCCCCcchh--------hcCCCCCCEEEccCccCcccCCcCcC----CCcccEEE
Q 046050          366 ISGKIPKWLGNL--SNLVDIIMPNNHLEGPIPAN--------LCKLNFLTVLDLEVNNISGSLPSCFS----SWLLTQVH  431 (779)
Q Consensus       366 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~L~~L~  431 (779)
                      +++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|+.|++++|++++..+..+.    ..+++.|+
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            555544444443  44555555555554332221        11233444444444444433332221    13344444


Q ss_pred             ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhc--CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcc
Q 046050          432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDK--LSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSG  509 (779)
Q Consensus       432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  509 (779)
                      +++|...+..            +..+.+.+..+..+..  .++|++|++++|++.+..|..+..+++|++|++++|++++
T Consensus       246 l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          246 LSNSYNMGSS------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             CTTCTTTSCC------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             eccccccccc------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence            4444332211            1111222222222322  3689999999999998888889999999999999999986


Q ss_pred             cCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCc
Q 046050          510 TIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNK  589 (779)
Q Consensus       510 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  589 (779)
                      ..|..+       +                                                    .++.|+.|++++|+
T Consensus       314 ~~~~~~-------~----------------------------------------------------~l~~L~~L~Ls~N~  334 (455)
T 3v47_A          314 IDDNAF-------W----------------------------------------------------GLTHLLKLNLSQNF  334 (455)
T ss_dssp             ECTTTT-------T----------------------------------------------------TCTTCCEEECCSSC
T ss_pred             cChhHh-------c----------------------------------------------------CcccCCEEECCCCc
Confidence            655554       1                                                    14678899999999


Q ss_pred             cCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          590 LTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       590 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      +++..|..++.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.||.
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9888888999999999999999999988899999999999999999999987777889999999999999999999996

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.7e-40  Score=362.21  Aligned_cols=200  Identities=26%  Similarity=0.351  Sum_probs=97.4

Q ss_pred             CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEE
Q 046050          206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN  285 (779)
Q Consensus       206 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  285 (779)
                      +|++|++++|.+++ +|..    .++|++|++++|+++++...    .++|++|++++|.++ .+| .+.. +++|++|+
T Consensus        92 ~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~-~lp-~~~~-l~~L~~L~  159 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE-KLP-ELQN-SSFLKIID  159 (454)
T ss_dssp             TCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS-SCC-CCTT-CTTCCEEE
T ss_pred             CCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC-CCc-ccCC-CCCCCEEE
Confidence            44444444444442 3321    24444555554444432110    134555555555554 344 2222 44555555


Q ss_pred             ccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc
Q 046050          286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH  365 (779)
Q Consensus       286 l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  365 (779)
                      +++|++++ +|..+      .+|++|++++|.+++ +| .++.+++|++|++++|++++ +|...   ++|++|++++|.
T Consensus       160 l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~  226 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI  226 (454)
T ss_dssp             CCSSCCSC-CCCCC------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred             CCCCcCcc-cCCCc------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc
Confidence            55555542 22211      145555555555554 23 35566666666666666653 33221   356666666666


Q ss_pred             cCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcc
Q 046050          366 ISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG  439 (779)
Q Consensus       366 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  439 (779)
                      ++ .+|. ++.+++|++|++++|++++ +|.   .+++|+.|++++|++++. |..  .++|+.|++++|++++
T Consensus       227 l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          227 LE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE
T ss_pred             CC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Ccc--cCcCCEEECcCCccCc
Confidence            66 4442 5566666666666666653 232   135566666666666542 221  2344444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-38  Score=352.19  Aligned_cols=350  Identities=22%  Similarity=0.225  Sum_probs=226.1

Q ss_pred             CCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccc-cccccCCCCCCEEEccCCcCccccCccccCCCCCCE
Q 046050          280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHI-FSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGG  358 (779)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  358 (779)
                      +|++|++++|.+++..|..+   .++++|++|++++|.+.+.+ +..+.++++|++|++++|++++..|..+.++++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTT---SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             ccCEEEecCCccCcCChhHh---ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            44444444444443333322   12224444444444443222 233444555555555555555444455555555555


Q ss_pred             EEccCCccCCCcchh--hhCCCCCceEEccCCCCCCCcchh-hcCCCCCCEEEccCccCcccCCcCcC---CCcccEEEc
Q 046050          359 LYLSDNHISGKIPKW--LGNLSNLVDIIMPNNHLEGPIPAN-LCKLNFLTVLDLEVNNISGSLPSCFS---SWLLTQVHL  432 (779)
Q Consensus       359 L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~L~~L~l  432 (779)
                      |++++|.+++..+..  +..+++|++|++++|.+++..|.. +.++++|++|++++|++++..+..+.   ...++.+++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            555555554433322  445555555555555555444433 44555555555555555544444333   134555555


Q ss_pred             cCCcCcccchhhHh----------hcceEEEccCccccCcCchhhhcC---CCCcEEEccCCcCcc----------cCcc
Q 046050          433 SRNKIEGQLEDVFG----------DILVTLDLSYNRFSGRIPNWIDKL---SHLSYLILANNNLEG----------EVPV  489 (779)
Q Consensus       433 ~~n~l~~~~~~~~~----------~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~----------~~~~  489 (779)
                      ++|.+.+..+..+.          ..|++|++++|++++..|..+...   ++|+.|++++|.+.+          ..+.
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            55555544332211          125666666666655555444332   566666666664432          2222


Q ss_pred             cccC--CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcC
Q 046050          490 QLCL--LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKN  567 (779)
Q Consensus       490 ~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (779)
                      .+..  .++|+.|++++|++++..|..+       +                                            
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~--------------------------------------------  296 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVF-------S--------------------------------------------  296 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTT-------T--------------------------------------------
T ss_pred             ccccccccCceEEEecCccccccchhhc-------c--------------------------------------------
Confidence            2222  3689999999999997766655       1                                            


Q ss_pred             ceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhh
Q 046050          568 TSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLV  647 (779)
Q Consensus       568 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  647 (779)
                              .+++|++|++++|++++..|..|+.+++|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..|.
T Consensus       297 --------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          297 --------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             --------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             --------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence                    156899999999999988899999999999999999999988899999999999999999999999999999


Q ss_pred             hcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          648 ELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       648 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      .+++|++|++++|++++..+..+..+..++.+.+++|++.|.|+
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999999998777777889999999999999999997

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-38  Score=347.24  Aligned_cols=412  Identities=21%  Similarity=0.251  Sum_probs=173.7

Q ss_pred             CCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCC-------------CEEeCCCCcCcccC
Q 046050           56 LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL-------------RILDIASNQITGNI  122 (779)
Q Consensus        56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~i  122 (779)
                      .++|++|++++|.+ +.+|. .++++++|++|++++|.+++.+|..++++++|             ++|++++|.++ .+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred             cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence            46677777777776 56663 56777777777777777776677666666654             66666666666 45


Q ss_pred             CchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhh
Q 046050          123 SSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY  202 (779)
Q Consensus       123 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  202 (779)
                      |.    ..++|++|++++|.+++ ++..    .                         .+|++|++++|.+.+ ++..  
T Consensus        87 p~----~~~~L~~L~l~~n~l~~-lp~~----~-------------------------~~L~~L~l~~n~l~~-l~~~--  129 (454)
T 1jl5_A           87 PE----LPPHLESLVASCNSLTE-LPEL----P-------------------------QSLKSLLVDNNNLKA-LSDL--  129 (454)
T ss_dssp             CS----CCTTCSEEECCSSCCSS-CCCC----C-------------------------TTCCEEECCSSCCSC-CCSC--
T ss_pred             CC----CcCCCCEEEccCCcCCc-cccc----c-------------------------CCCcEEECCCCccCc-ccCC--
Confidence            54    13566666666666553 2210    0                         134444444443332 1110  


Q ss_pred             CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050          203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE  282 (779)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  282 (779)
                       .++|++|++++|.++ .+|.  ++++++|++|++++|++++                         +|..    .++|+
T Consensus       130 -~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-------------------------lp~~----~~~L~  176 (454)
T 1jl5_A          130 -PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-------------------------LPDL----PPSLE  176 (454)
T ss_dssp             -CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-------------------------CCCC----CTTCC
T ss_pred             -CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-------------------------cCCC----ccccc
Confidence             134555555555554 2442  3444455555555554443                         3321    12445


Q ss_pred             EEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEcc
Q 046050          283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS  362 (779)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  362 (779)
                      +|++++|.+++ +| .+   .++++|++|++++|.+++ +|..   .++|++|++++|+++ .+|. +..+++|++|+++
T Consensus       177 ~L~L~~n~l~~-l~-~~---~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          177 FIAAGNNQLEE-LP-EL---QNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             EEECCSSCCSS-CC-CC---TTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             EEECcCCcCCc-Cc-cc---cCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence            55555554443 22 11   223355555555555543 2221   235666666666666 4443 6666666666666


Q ss_pred             CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccch
Q 046050          363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE  442 (779)
Q Consensus       363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  442 (779)
                      +|++++ +|..   .++|++|++++|++++ +|..   .++|+.|++++|++++... .  .++|+.|++++|++++...
T Consensus       246 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~~i~~  314 (454)
T 1jl5_A          246 NNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-L--PPNLYYLNASSNEIRSLCD  314 (454)
T ss_dssp             SSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-C--CTTCCEEECCSSCCSEECC
T ss_pred             CCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-c--CCcCCEEECcCCcCCcccC
Confidence            666664 3332   3567777777777664 3332   3677777777777775321 1  1345555555555543211


Q ss_pred             hhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050          443 DVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE  522 (779)
Q Consensus       443 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~  522 (779)
                        +                        .++|++|++++|++++ +|..   +++|++|++++|+++ .+|. .       
T Consensus       315 --~------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-~-------  355 (454)
T 1jl5_A          315 --L------------------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-L-------  355 (454)
T ss_dssp             --C------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-C-------
T ss_pred             --C------------------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-h-------
Confidence              0                        1355555555555553 3322   355666666666665 3333 1       


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC--CCCccccC
Q 046050          523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG--EIPFQIGY  600 (779)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~  600 (779)
                                                                            +++|++|++++|++++  .+|..+..
T Consensus       356 ------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          356 ------------------------------------------------------PQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             ------------------------------------------------------hhhccEEECCCCCCCcCCCChHHHHh
Confidence                                                                  2445666666666665  44544432


Q ss_pred             cccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC--CCchhhhhcccCcEEEccCCcCcccCCCCCCc
Q 046050          601 LNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG--KIPTQLVELYALAIFSVAHNNLSGKVPDRVGQ  672 (779)
Q Consensus       601 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  672 (779)
                              |+.|.+.+.+|..   +++|+.||+++|++++  .+|.      +++.|.+.+|.+.+.+|.....
T Consensus       382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             --------EECCC-------------------------------------------------------------
T ss_pred             --------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence                    2345566666653   4778888888888886  5554      3566678888888777764333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=334.68  Aligned_cols=325  Identities=18%  Similarity=0.153  Sum_probs=234.4

Q ss_pred             ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050          308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN  387 (779)
Q Consensus       308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  387 (779)
                      ++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  113 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE  113 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence            44444444444444444555556666666666666555555566666666666666666644444556666666666666


Q ss_pred             CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCc
Q 046050          388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIP  464 (779)
Q Consensus       388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~  464 (779)
                      |.+.+..+..|..+++|+.|++++|.+++..+..+. +++|++|++++|.+++.++..+...  |+.|++++|.+.+..+
T Consensus       114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            666655555666666666666666666655555554 5566666666666666666555544  7777888887777777


Q ss_pred             hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050          465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG  544 (779)
Q Consensus       465 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  544 (779)
                      ..+..+++|+.|++++|+..+.+|.......+|+.|++++|+++ .+|...+.                           
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~---------------------------  245 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR---------------------------  245 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHT---------------------------
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhc---------------------------
Confidence            77888999999999998887777776666779999999999998 55543321                           


Q ss_pred             cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC
Q 046050          545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH  624 (779)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  624 (779)
                                                     .++.|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|.+
T Consensus       246 -------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          246 -------------------------------HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             -------------------------------TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             -------------------------------CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence                                           1467899999999999888888999999999999999999999999999


Q ss_pred             CCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       625 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      +++|+.|+|++|++++..+..|..+++|++|++++|++.|.++.. ..+.......+.++...|..|.
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence            999999999999999888888899999999999999999887652 1223334456788888887664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.9e-35  Score=321.70  Aligned_cols=346  Identities=23%  Similarity=0.288  Sum_probs=215.8

Q ss_pred             CCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCE
Q 046050          204 QHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH  283 (779)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  283 (779)
                      +++++.|+++++.+. .+|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++. +. .+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCCE
Confidence            345666666666665 4554  3556666666666666665433  666666666666666666 3333 32 2556666


Q ss_pred             EEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccC
Q 046050          284 FNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSD  363 (779)
Q Consensus       284 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  363 (779)
                      |++++|.+++..+     ...+++|++|++++|.+.+.  ..+..+++|++|+++                         
T Consensus       117 L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-------------------------  164 (466)
T 1o6v_A          117 LTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-------------------------  164 (466)
T ss_dssp             EECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-------------------------
T ss_pred             EECCCCCCCCChH-----HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-------------------------
Confidence            6666665553211     22333555555555554432  124444555555543                         


Q ss_pred             CccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchh
Q 046050          364 NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLED  443 (779)
Q Consensus       364 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  443 (779)
                      |.+.+..  .+.++++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+++...-
T Consensus       165 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l  239 (466)
T 1o6v_A          165 NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTL  239 (466)
T ss_dssp             ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred             CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhh
Confidence            2222211  144444444444444444422  124444455555555554443333 12244455555555555443211


Q ss_pred             hHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050          444 VFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEG  523 (779)
Q Consensus       444 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~  523 (779)
                      .....|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +        
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~--------  305 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I--------  305 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G--------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h--------
Confidence            111226777777777765543  7788899999999999886544  7888999999999998875322  1        


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCccc
Q 046050          524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNM  603 (779)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  603 (779)
                                                                         ..+++|+.|++++|++++..|  +..+++
T Consensus       306 ---------------------------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~  332 (466)
T 1o6v_A          306 ---------------------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTK  332 (466)
T ss_dssp             ---------------------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             ---------------------------------------------------cCCCCCCEEECcCCcCCCchh--hccCcc
Confidence                                                               115678899999999987655  788999


Q ss_pred             CcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050          604 IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK  665 (779)
Q Consensus       604 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  665 (779)
                      |+.|++++|++++.  ..+.++++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999865  468899999999999999998777  88999999999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.9e-35  Score=319.14  Aligned_cols=352  Identities=19%  Similarity=0.168  Sum_probs=191.6

Q ss_pred             cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEc
Q 046050          182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDV  261 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  261 (779)
                      +|++|++++|.+.+. | .+..+++|++|++++|.+++ +|   ++.+++|++|++++|++++.   .++.+++|++|++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L  113 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC  113 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCEEEC
Confidence            444555555544432 2 34555555555555555552 33   24455555555555555543   2455555555555


Q ss_pred             cCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCc
Q 046050          262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ  341 (779)
Q Consensus       262 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  341 (779)
                      ++|.++ .+|  +. .+++|++|++++|.+++. +     ...+++|++|++++|...+.+  .+..+++|+.|++++|+
T Consensus       114 ~~N~l~-~l~--~~-~l~~L~~L~l~~N~l~~l-~-----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          114 DTNKLT-KLD--VS-QNPLLTYLNCARNTLTEI-D-----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CSSCCS-CCC--CT-TCTTCCEEECTTSCCSCC-C-----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             CCCcCC-eec--CC-CCCcCCEEECCCCcccee-c-----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            555555 233  22 245555555555555432 1     122334555555555333222  23445555555555555


Q ss_pred             CccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcC
Q 046050          342 FTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSC  421 (779)
Q Consensus       342 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  421 (779)
                      +++ +|  +..+++|+.|++++|++++.   .++.+++|++|++++|++++ +|  +..+++|+.|++++|++++..+  
T Consensus       182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--  250 (457)
T 3bz5_A          182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--  250 (457)
T ss_dssp             CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC--
T ss_pred             cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH--
Confidence            553 22  44455555555555555532   14445555555555555553 23  4455555555555555554321  


Q ss_pred             cCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEE
Q 046050          422 FSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLID  501 (779)
Q Consensus       422 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  501 (779)
                      ..+++|+.|+++.|.            ++.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|.   ..++|+.|+
T Consensus       251 ~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~  313 (457)
T 3bz5_A          251 STLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD  313 (457)
T ss_dssp             TTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC
T ss_pred             HHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEec
Confidence            123344444444432            2234444444443333  23344444444444444333332   122233332


Q ss_pred             ccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceee
Q 046050          502 LSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMF  581 (779)
Q Consensus       502 Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  581 (779)
                      +++                                                                        .+.|+
T Consensus       314 l~~------------------------------------------------------------------------~~~L~  321 (457)
T 3bz5_A          314 LSQ------------------------------------------------------------------------NPKLV  321 (457)
T ss_dssp             CTT------------------------------------------------------------------------CTTCC
T ss_pred             hhh------------------------------------------------------------------------cccCC
Confidence            222                                                                        24688


Q ss_pred             EEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCc
Q 046050          582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN  661 (779)
Q Consensus       582 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  661 (779)
                      .|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|.++|.     ..+..|..+++++|+
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~  385 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS  385 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc
Confidence            899999999974 3  8999999999999999985        35677788999999976     356788999999999


Q ss_pred             CcccCCCCC
Q 046050          662 LSGKVPDRV  670 (779)
Q Consensus       662 l~~~~p~~~  670 (779)
                      ++|.+|..+
T Consensus       386 l~g~ip~~~  394 (457)
T 3bz5_A          386 LTIAVSPDL  394 (457)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEcChhH
Confidence            999999853

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=329.67  Aligned_cols=322  Identities=20%  Similarity=0.180  Sum_probs=290.3

Q ss_pred             cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050          309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN  388 (779)
Q Consensus       309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  388 (779)
                      +.++.+++.++ .+|..+  .++++.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56777777777 445443  368999999999999888889999999999999999999888999999999999999999


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCch
Q 046050          389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPN  465 (779)
Q Consensus       389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~  465 (779)
                      .+++..+..|.++++|++|++++|++.+..+..+. +++|++|++++|.+++..+..|...  |+.|++++|++++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            99977777889999999999999999998888777 8999999999999999888877766  99999999999988888


Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050          466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE  545 (779)
Q Consensus       466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  545 (779)
                      .+..+++|+.|++++|++.+..+..|..+++|+.|++++|+..+.+|...+.                            
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------  222 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----------------------------  222 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----------------------------
Confidence            8999999999999999999988889999999999999999988777765411                            


Q ss_pred             ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050          546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  625 (779)
                                                     ..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++
T Consensus       223 -------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          223 -------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             -------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             -------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence                                           2368999999999996555789999999999999999998888999999


Q ss_pred             CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      ++|+.|+|++|++++..|..|..+++|++|++++|++++..+..+..+..++.+.+++||+.|+|.+
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            9999999999999999999999999999999999999987777778889999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.9e-34  Score=316.57  Aligned_cols=349  Identities=28%  Similarity=0.349  Sum_probs=274.2

Q ss_pred             CccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEE
Q 046050          180 KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTI  259 (779)
Q Consensus       180 ~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  259 (779)
                      +.+++.|+++++.+.. +| .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            3489999999999874 44 4788999999999999998 5555  5899999999999999998755  8999999999


Q ss_pred             EccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccC
Q 046050          260 DVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDA  339 (779)
Q Consensus       260 ~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  339 (779)
                      ++++|.++ .++. +. .+++|++|++++|.+.+ ++    ...++++|+.|+++ |.+.+..  .+..+++|++|++++
T Consensus       118 ~L~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~-~~----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          118 TLFNNQIT-DIDP-LK-NLTNLNRLELSSNTISD-IS----ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISS  186 (466)
T ss_dssp             ECCSSCCC-CCGG-GT-TCTTCSEEEEEEEEECC-CG----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCS
T ss_pred             ECCCCCCC-CChH-Hc-CCCCCCEEECCCCccCC-Ch----hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcC
Confidence            99999998 5665 44 48999999999999874 23    23456699999997 4555332  378899999999999


Q ss_pred             CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCC
Q 046050          340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP  419 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  419 (779)
                      |.+.+.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+
T Consensus       187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence            998743  347888999999999999986655  77788999999999988753  357788888888888888875544


Q ss_pred             cCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 046050          420 SCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQL  499 (779)
Q Consensus       420 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  499 (779)
                       ...+++|+.|++++|.                      +++..+  +..+++|+.|++++|++++..+  +..+++|+.
T Consensus       261 -~~~l~~L~~L~l~~n~----------------------l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQ----------------------ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             -GTTCTTCSEEECCSSC----------------------CCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             -hhcCCCCCEEECCCCc----------------------cCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence             2225555555555554                      443322  6677888888888888876544  677888888


Q ss_pred             EEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccce
Q 046050          500 IDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKI  579 (779)
Q Consensus       500 L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  579 (779)
                      |++++|++++..|  +                                                           ..++.
T Consensus       314 L~L~~n~l~~~~~--~-----------------------------------------------------------~~l~~  332 (466)
T 1o6v_A          314 LTLYFNNISDISP--V-----------------------------------------------------------SSLTK  332 (466)
T ss_dssp             EECCSSCCSCCGG--G-----------------------------------------------------------GGCTT
T ss_pred             EECcCCcCCCchh--h-----------------------------------------------------------ccCcc
Confidence            8888888875443  1                                                           11467


Q ss_pred             eeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchh
Q 046050          580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQ  645 (779)
Q Consensus       580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  645 (779)
                      |+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++ .|..
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence            88888888888854  468889999999999999998777  8999999999999999996 4433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-34  Score=316.69  Aligned_cols=315  Identities=19%  Similarity=0.171  Sum_probs=159.3

Q ss_pred             cCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCC
Q 046050           29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL  108 (779)
Q Consensus        29 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  108 (779)
                      +.++++|++|++++|.+++. | .+..+++|++|++++|.+.+. +   ++.+++|++|++++|.+++. +  ++++++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            44556666666666666543 2 455666666666666665442 2   55566666666666666543 2  5566666


Q ss_pred             CEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEEC
Q 046050          109 RILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL  188 (779)
Q Consensus       109 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L  188 (779)
                      ++|++++|+++ .++   ++.+++|++|++++|++++ +   .+.+++                         +|++|++
T Consensus       109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~-------------------------~L~~L~l  155 (457)
T 3bz5_A          109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNT-------------------------QLTELDC  155 (457)
T ss_dssp             CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCT-------------------------TCCEEEC
T ss_pred             CEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCC-------------------------cCCEEEC
Confidence            66666666665 342   5556666666666666553 1   133344                         4444444


Q ss_pred             CCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCc
Q 046050          189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQG  268 (779)
Q Consensus       189 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  268 (779)
                      ++|...+.+  .+..+++|++|++++|+++ .+|   +..+++|++|++++|++++.   .+..+++|++|++++|+++ 
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-  225 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-  225 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-
Confidence            444322222  2444555666666666555 243   24555666666666665553   3555566666666666665 


Q ss_pred             CCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCc
Q 046050          269 HIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPE  348 (779)
Q Consensus       269 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  348 (779)
                      .+|  +. .+++|+.|++++|++++..+      ..+++|+.|++++|              +|+.|++++|.+.+.+| 
T Consensus       226 ~ip--~~-~l~~L~~L~l~~N~l~~~~~------~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          226 EID--VT-PLTQLTYFDCSVNPLTELDV------STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ-  281 (457)
T ss_dssp             CCC--CT-TCTTCSEEECCSSCCSCCCC------TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred             ccC--cc-ccCCCCEEEeeCCcCCCcCH------HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence            344  22 24555566665555554321      12224555554433              23344455555444433 


Q ss_pred             cccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc
Q 046050          349 NLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT  428 (779)
Q Consensus       349 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  428 (779)
                       +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|+.|++++|++++. + ...++.|+
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~  342 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLK  342 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCS
T ss_pred             -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCc
Confidence             33455555555555554444442   2233333333322             4555555555555542 1 22244444


Q ss_pred             EEEccCCcCc
Q 046050          429 QVHLSRNKIE  438 (779)
Q Consensus       429 ~L~l~~n~l~  438 (779)
                      .|++++|+++
T Consensus       343 ~L~l~~N~l~  352 (457)
T 3bz5_A          343 SLSCVNAHIQ  352 (457)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            4444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-34  Score=311.77  Aligned_cols=335  Identities=18%  Similarity=0.186  Sum_probs=222.0

Q ss_pred             CCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCC
Q 046050          253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNL  332 (779)
Q Consensus       253 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  332 (779)
                      +++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+   .++++|++|++++|.+++..+..+..+++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhc---cCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            467777777777776 6777766657778888777777765444333   233367777777777766666666677777


Q ss_pred             CEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCc
Q 046050          333 VTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVN  412 (779)
Q Consensus       333 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  412 (779)
                      ++|++++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            7777777777744334456677777777777777766666677777777777777776643   2345666777777777


Q ss_pred             cCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc
Q 046050          413 NISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC  492 (779)
Q Consensus       413 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  492 (779)
                      .+++..    ....|++|++++|.+...+..                         ..++|+.|++++|++++.  ..+.
T Consensus       197 ~l~~~~----~~~~L~~L~l~~n~l~~~~~~-------------------------~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          197 LLSTLA----IPIAVEELDASHNSINVVRGP-------------------------VNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             CCSEEE----CCSSCSEEECCSSCCCEEECC-------------------------CCSSCCEEECCSSCCCCC--GGGG
T ss_pred             cccccC----CCCcceEEECCCCeeeecccc-------------------------ccccccEEECCCCCCccc--HHHc
Confidence            665321    123455555555555443221                         124555555555555532  3455


Q ss_pred             CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeee
Q 046050          493 LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYY  572 (779)
Q Consensus       493 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (779)
                      .+++|++|++++|++++..|..+       +                                                 
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~-------~-------------------------------------------------  269 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPF-------V-------------------------------------------------  269 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGG-------T-------------------------------------------------
T ss_pred             CCCCccEEECCCCcCCCcChhHc-------c-------------------------------------------------
Confidence            55555555555555554444333       0                                                 


Q ss_pred             cccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccC
Q 046050          573 QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL  652 (779)
Q Consensus       573 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  652 (779)
                         .+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++.. |  +..+++|
T Consensus       270 ---~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L  341 (390)
T 3o6n_A          270 ---KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  341 (390)
T ss_dssp             ---TCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             ---ccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence               1344555666666655 34555677889999999999998 5777788999999999999999854 3  6778899


Q ss_pred             cEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          653 AIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       653 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +.|++++|+++|.+..  ..+..+....+.+++..|.++
T Consensus       342 ~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          342 KNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            9999999999987665  456777777888888888754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-33  Score=322.84  Aligned_cols=335  Identities=19%  Similarity=0.189  Sum_probs=225.7

Q ss_pred             CCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCC
Q 046050          253 LKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNL  332 (779)
Q Consensus       253 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  332 (779)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..+   ..+++|+.|++++|.+++..+..++++++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHh---cCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            456777777777776 6777666667777777777777775554444   233467777777777776666666677777


Q ss_pred             CEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCc
Q 046050          333 VTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVN  412 (779)
Q Consensus       333 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  412 (779)
                      ++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.|++++|
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence            77777777777444445567777777777777777666666777777777777777766432   344566777777777


Q ss_pred             cCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc
Q 046050          413 NISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC  492 (779)
Q Consensus       413 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  492 (779)
                      .+++..    ....|+.|++++|.+...++..                         .++|+.|+|++|.+++  +..+.
T Consensus       203 ~l~~l~----~~~~L~~L~ls~n~l~~~~~~~-------------------------~~~L~~L~L~~n~l~~--~~~l~  251 (597)
T 3oja_B          203 LLSTLA----IPIAVEELDASHNSINVVRGPV-------------------------NVELTILKLQHNNLTD--TAWLL  251 (597)
T ss_dssp             CCSEEE----CCTTCSEEECCSSCCCEEECSC-------------------------CSCCCEEECCSSCCCC--CGGGG
T ss_pred             cccccc----CCchhheeeccCCccccccccc-------------------------CCCCCEEECCCCCCCC--Chhhc
Confidence            665321    1234555555555554433211                         1345555555555553  23455


Q ss_pred             CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeee
Q 046050          493 LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYY  572 (779)
Q Consensus       493 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (779)
                      .+++|+.|++++|.+++..|..+       +.                                                
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~-------~~------------------------------------------------  276 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPF-------VK------------------------------------------------  276 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGG-------TT------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCCCHHHh-------cC------------------------------------------------
Confidence            55555555555555554444443       11                                                


Q ss_pred             cccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccC
Q 046050          573 QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYAL  652 (779)
Q Consensus       573 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  652 (779)
                          ++.|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. |  +..+++|
T Consensus       277 ----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L  347 (597)
T 3oja_B          277 ----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  347 (597)
T ss_dssp             ----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             ----ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence                3455556666666653 4556677889999999999998 6788889999999999999999855 3  6678899


Q ss_pred             cEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          653 AIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       653 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +.|++++|+++|.++.  ..+..+....+.+++..|+.+
T Consensus       348 ~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          348 KNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            9999999999988765  467778888889999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.4e-33  Score=292.51  Aligned_cols=258  Identities=32%  Similarity=0.522  Sum_probs=224.8

Q ss_pred             CCCCEEEccCCccCC--CcchhhhCCCCCceEEccC-CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccE
Q 046050          354 SLLGGLYLSDNHISG--KIPKWLGNLSNLVDIIMPN-NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQ  429 (779)
Q Consensus       354 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~  429 (779)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+. +++   
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT---  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT---
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC---
Confidence            568888888888887  7888888888888888884 888888888888888888888888888876666543 444   


Q ss_pred             EEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCC-CCCEEEccCCcCc
Q 046050          430 VHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLK-QLQLIDLSHNNLS  508 (779)
Q Consensus       430 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  508 (779)
                                         |++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus       127 -------------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          127 -------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             -------------------CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             -------------------CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence                               55566666666667888899999999999999999999999999998 9999999999999


Q ss_pred             ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050          509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN  588 (779)
Q Consensus       509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  588 (779)
                      +.+|..+..                                                           ++ |+.|++++|
T Consensus       188 ~~~~~~~~~-----------------------------------------------------------l~-L~~L~Ls~N  207 (313)
T 1ogq_A          188 GKIPPTFAN-----------------------------------------------------------LN-LAFVDLSRN  207 (313)
T ss_dssp             EECCGGGGG-----------------------------------------------------------CC-CSEEECCSS
T ss_pred             ccCChHHhC-----------------------------------------------------------Cc-ccEEECcCC
Confidence            888877611                                                           23 889999999


Q ss_pred             ccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       589 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ++++.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999977666 88999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcccCCCCCCCCCCCCCC
Q 046050          669 RVGQFATFTENSYDGNSLLCGQPLSESC  696 (779)
Q Consensus       669 ~~~~~~~l~~~~~~~N~~lc~~~l~~~c  696 (779)
                      . +++.+++.+.+.+||++||.|+. .|
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             C-ccccccChHHhcCCCCccCCCCC-CC
Confidence            6 88999999999999999998876 46

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=298.02  Aligned_cols=310  Identities=19%  Similarity=0.194  Sum_probs=220.9

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      +++.|++++|.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            45555555555554433344555666666666666655444556666666666666666665555556666666666666


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN  465 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  465 (779)
                      +|.++...+..|..+++|++|++++|++++..+..+. +++|++|++++|++++.....+ ..|+.|++++|.+++.   
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~L~~L~l~~n~l~~~---  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLLSTL---  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGC-TTCSEEECCSSCCSEE---
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccc-cccceeeccccccccc---
Confidence            6666644334455666666666666666655555444 5566666666666665432222 2277777777776632   


Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050          466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE  545 (779)
Q Consensus       466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  545 (779)
                        ...++|++|++++|++... |.  ...++|+.|++++|++++.  +.+                              
T Consensus       202 --~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l------------------------------  244 (390)
T 3o6n_A          202 --AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWL------------------------------  244 (390)
T ss_dssp             --ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGG------------------------------
T ss_pred             --CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHH------------------------------
Confidence              3446899999999999865 33  2357899999999999842  222                              


Q ss_pred             ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050          546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  625 (779)
                                                   ..++.|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+
T Consensus       245 -----------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l  294 (390)
T 3o6n_A          245 -----------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI  294 (390)
T ss_dssp             -----------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred             -----------------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence                                         125789999999999998889999999999999999999995 67777889


Q ss_pred             CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      ++|+.|++++|+++ .+|..+..+++|++|++++|+++.. |  +..+..++.+.+++||+.|.+.
T Consensus       295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence            99999999999998 6788899999999999999999854 4  4678899999999999999763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-31  Score=281.69  Aligned_cols=306  Identities=23%  Similarity=0.286  Sum_probs=187.9

Q ss_pred             CCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCC
Q 046050          251 NPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLT  330 (779)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  330 (779)
                      ..+++|++|+++++.+. .++. +.. +++|++|++++|.+++..+     ..++++|++|++++|.+++.  ..+..++
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~--~~~~~l~  110 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDI--SALQNLT  110 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             hhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCc--hHHcCCC
Confidence            35567777777777776 5543 332 5666666666666653221     22333555555555555432  2344555


Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      +|++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus       111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            555555555555422 21 4445555555555553332222 24445555555555554443222  4444444444444


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ  490 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  490 (779)
                      +                       |.+.+..+......|+.|++++|.+.+..+  +..+++|++|++++|++++..+  
T Consensus       186 ~-----------------------n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          186 Y-----------------------NQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             T-----------------------SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             C-----------------------CcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence            4                       444443331111226666666666664433  6778888888888888875444  


Q ss_pred             ccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCcee
Q 046050          491 LCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSY  570 (779)
Q Consensus       491 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      +..+++|++|++++|++++ ++ .+                                                       
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~~-~~-------------------------------------------------------  261 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-IN-AV-------------------------------------------------------  261 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GG-------------------------------------------------------
T ss_pred             hhcCCCCCEEECCCCccCC-Ch-hH-------------------------------------------------------
Confidence            7788888888888888863 22 12                                                       


Q ss_pred             eecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc
Q 046050          571 YYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY  650 (779)
Q Consensus       571 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  650 (779)
                          ..+++|+.|++++|++++.  +.+..+++|+.|++++|++++..|..++++++|+.|++++|++++..|  +..++
T Consensus       262 ----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          262 ----KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             ----TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             ----hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence                1146788888888888853  457888999999999999988888889999999999999999987666  78889


Q ss_pred             cCcEEEccCCcCc
Q 046050          651 ALAIFSVAHNNLS  663 (779)
Q Consensus       651 ~L~~L~ls~N~l~  663 (779)
                      +|++|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            9999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-32  Score=310.60  Aligned_cols=310  Identities=19%  Similarity=0.195  Sum_probs=226.5

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      +++.+++++|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            45555555555554444445556666666666666665555566666666666666666666555566666666666666


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN  465 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  465 (779)
                      +|.+++..+..|.++++|++|++++|.+++..|..+. +++|+.|++++|.+++.....+ ..|+.|++++|.+++    
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~L~l~~n~l~~----  206 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLLST----  206 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGC-TTCSEEECCSSCCSE----
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhh-hhhhhhhcccCcccc----
Confidence            6666644444456666666666666666666555554 5666666666666665543322 227777777777764    


Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050          466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE  545 (779)
Q Consensus       466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  545 (779)
                       +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+                              
T Consensus       207 -l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l------------------------------  250 (597)
T 3oja_B          207 -LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWL------------------------------  250 (597)
T ss_dssp             -EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGG------------------------------
T ss_pred             -ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhh------------------------------
Confidence             234568999999999998554432   3689999999999985  2322                              


Q ss_pred             ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050          546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  625 (779)
                                                   ..++.|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..+..+
T Consensus       251 -----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  300 (597)
T 3oja_B          251 -----------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI  300 (597)
T ss_dssp             -----------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred             -----------------------------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence                                         125789999999999999999999999999999999999995 67778889


Q ss_pred             CCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          626 SQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      ++|+.|+|++|+++ .+|..+..+++|++|++++|++++. |  +..+..+..+.+++||+.|.+.
T Consensus       301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence            99999999999999 6888899999999999999999865 3  3578889999999999999763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.5e-31  Score=280.62  Aligned_cols=306  Identities=25%  Similarity=0.347  Sum_probs=153.3

Q ss_pred             cCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCC
Q 046050           54 AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL  133 (779)
Q Consensus        54 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  133 (779)
                      ..+++|++|+++++.+.. ++  .+..+++|++|++++|.+++..+  +.++++|++|++++|.++ .++  .+..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTC
T ss_pred             hhcccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcC
Confidence            344556666666665532 22  35556666666666666553322  556666666666666665 343  35566666


Q ss_pred             CEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEcc
Q 046050          134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLS  213 (779)
Q Consensus       134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls  213 (779)
                      ++|++++|.+++ ++  .+..++                         +|++|++++|...... ..+..+++|++|+++
T Consensus       113 ~~L~l~~n~i~~-~~--~~~~l~-------------------------~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~  163 (347)
T 4fmz_A          113 RELYLNEDNISD-IS--PLANLT-------------------------KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT  163 (347)
T ss_dssp             SEEECTTSCCCC-CG--GGTTCT-------------------------TCCEEECTTCTTCCCC-GGGTTCTTCCEEECC
T ss_pred             CEEECcCCcccC-ch--hhccCC-------------------------ceeEEECCCCCCcccc-cchhhCCCCcEEEec
Confidence            666666665542 11  122222                         3333333333222122 224555556666666


Q ss_pred             CCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCc
Q 046050          214 HMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNG  293 (779)
Q Consensus       214 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~  293 (779)
                      +|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.+++++|.++ .++. + ..+++|++|++++|.+++
T Consensus       164 ~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          164 ESKVK-DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-V-ANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             SSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC
T ss_pred             CCCcC-Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-h-hcCCcCCEEEccCCccCC
Confidence            66555 2332  3455556666666655554322  455555566666665555 3322 2 224555555555555542


Q ss_pred             ccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchh
Q 046050          294 SIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKW  373 (779)
Q Consensus       294 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  373 (779)
                      ..+     ...+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..+..
T Consensus       236 ~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          236 LSP-----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             CGG-----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             Ccc-----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence            221     12233455555555555432  2344555555555555555532  23455555555555555555555555


Q ss_pred             hhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050          374 LGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       374 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      +..+++|++|++++|++++..|  +..+++|+.|++++|.++
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            5555555555555555554433  455555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9e-31  Score=276.12  Aligned_cols=267  Identities=21%  Similarity=0.256  Sum_probs=153.5

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      +++.|++++|.+++..+..+.++++|++|++++|++++..|..+.++++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            4555555555555554555666666666666666666555666666666666666666666 3333332  566667777


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcc--cCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCc
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISG--SLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP  464 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  464 (779)
                      +|.+++..+..|..+++|+.|++++|.++.  ..+..+...+|+.|++++|++++.+.                      
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~----------------------  189 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK----------------------  189 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS----------------------
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc----------------------
Confidence            666665555556666777777777776642  44444442255555555555443222                      


Q ss_pred             hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccc
Q 046050          465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAG  544 (779)
Q Consensus       465 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  544 (779)
                       .+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+                             
T Consensus       190 -~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-----------------------------  237 (332)
T 2ft3_A          190 -DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-----------------------------  237 (332)
T ss_dssp             -SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-----------------------------
T ss_pred             -ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-----------------------------
Confidence             111  355555555555555555555555555555555555553322222                             


Q ss_pred             cccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC
Q 046050          545 EAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH  624 (779)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  624 (779)
                                                    ..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus       238 ------------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          238 ------------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             ------------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             ------------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence                                          01344555555555555 55556666677777777777776655555554


Q ss_pred             C------CCCCEEECCCCcCc--CCCchhhhhcccCcEEEccCCc
Q 046050          625 L------SQIESLDLSYNMLQ--GKIPTQLVELYALAIFSVAHNN  661 (779)
Q Consensus       625 l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  661 (779)
                      .      ++|+.|++++|++.  +..|.+|..+++|+.+++++|+
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            3      56777777777776  5666777777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.9e-31  Score=278.07  Aligned_cols=254  Identities=28%  Similarity=0.461  Sum_probs=214.4

Q ss_pred             CCCCEEEccCCcCcc--ccCccccCCCCCCEEEccC-CccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCE
Q 046050          330 TNLVTLQLDANQFTG--GIPENLLNCSLLGGLYLSD-NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTV  406 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  406 (779)
                      .+++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|.+++..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8999999999999999995 9999999999999999999999999999899999999999999


Q ss_pred             EEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCC-CCcEEEccCCcCc
Q 046050          407 LDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLS-HLSYLILANNNLE  484 (779)
Q Consensus       407 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  484 (779)
                      |++++|.+++..|..+. +++|++|++++|+++                      +.+|..+..++ +|++|++++|+++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----------------------~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRIS----------------------GAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCE----------------------EECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCccc----------------------CcCCHHHhhhhhcCcEEECcCCeee
Confidence            99999999987776655 556665555555544                      45666677776 7888888888888


Q ss_pred             ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEE
Q 046050          485 GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFR  564 (779)
Q Consensus       485 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (779)
                      +..|..+..++ |++|++++|++++..|..+       +                                         
T Consensus       188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~-------~-----------------------------------------  218 (313)
T 1ogq_A          188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLF-------G-----------------------------------------  218 (313)
T ss_dssp             EECCGGGGGCC-CSEEECCSSEEEECCGGGC-------C-----------------------------------------
T ss_pred             ccCChHHhCCc-ccEEECcCCcccCcCCHHH-------h-----------------------------------------
Confidence            77787777776 8888888888876655544       1                                         


Q ss_pred             EcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCch
Q 046050          565 TKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT  644 (779)
Q Consensus       565 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  644 (779)
                                 .+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|.
T Consensus       219 -----------~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          219 -----------SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             -----------TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             -----------cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence                       146778888888888866555 78899999999999999999999999999999999999999999998


Q ss_pred             hhhhcccCcEEEccCCcCcccCC
Q 046050          645 QLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       645 ~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      . ..+++|+.+++++|+.-+..|
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEESTT
T ss_pred             C-ccccccChHHhcCCCCccCCC
Confidence            7 889999999999999443333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.5e-30  Score=268.94  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhC------CCCCCEEECCCCcCcC--CCchhhhhc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH------LSQIESLDLSYNMLQG--KIPTQLVEL  649 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l  649 (779)
                      ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..      .+.|+.|++++|++..  ..|..|..+
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~  318 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  318 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence            34444555555554 45555566666666666666666555555543      2566777777777653  556667777


Q ss_pred             ccCcEEEccCCc
Q 046050          650 YALAIFSVAHNN  661 (779)
Q Consensus       650 ~~L~~L~ls~N~  661 (779)
                      ..++.+++++|+
T Consensus       319 ~~l~~l~L~~N~  330 (330)
T 1xku_A          319 YVRAAVQLGNYK  330 (330)
T ss_dssp             CCGGGEEC----
T ss_pred             cceeEEEecccC
Confidence            777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.6e-33  Score=309.28  Aligned_cols=62  Identities=19%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             cccEEECCCCcCCCCcch-hhhCCCCCCEEEccCCCCCCc----CchhhhhcCCCCCEEECcCCcccc
Q 046050          182 QLQNISLSGCRCDFTFPR-FLYYQHELRYVDLSHMNLRGE----FPNWLLENNKELETLLLANNSLSG  244 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~~~~  244 (779)
                      +|++|++++|+++..... .+..+++|++|++++|.+++.    ++.. +..+++|++|++++|.+.+
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh
Confidence            556666666655433222 245556666666666665521    1222 2444555555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.3e-33  Score=307.32  Aligned_cols=357  Identities=16%  Similarity=0.117  Sum_probs=204.8

Q ss_pred             CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCcccccccc-CCC--
Q 046050          255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSF-NLT--  330 (779)
Q Consensus       255 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~--  330 (779)
                      +|++||+++|.++......++..+++|++|++++|.++......+ .....+++|++|++++|.+.+..+..+. .++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            445555555555422222223334555555555555543221111 1222334555555555555433222221 233  


Q ss_pred             --CCCEEEccCCcCcc----ccCccccCCCCCCEEEccCCccCCCcchhhh-----CCCCCceEEccCCCCCCCc----c
Q 046050          331 --NLVTLQLDANQFTG----GIPENLLNCSLLGGLYLSDNHISGKIPKWLG-----NLSNLVDIIMPNNHLEGPI----P  395 (779)
Q Consensus       331 --~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~----~  395 (779)
                        +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              46666666666553    2355556666666666666665533332222     2345666666666665432    4


Q ss_pred             hhhcCCCCCCEEEccCccCcccCCcCcC------CCcccEEEccCCcCcccc----hhhHhhc--ceEEEccCccccCcC
Q 046050          396 ANLCKLNFLTVLDLEVNNISGSLPSCFS------SWLLTQVHLSRNKIEGQL----EDVFGDI--LVTLDLSYNRFSGRI  463 (779)
Q Consensus       396 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~----~~~~~~~--L~~L~L~~n~l~~~~  463 (779)
                      ..+..+++|++|++++|.++...+..+.      .++|++|++++|.++...    +..+...  |+.|++++|.+++..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            4445566666666666666543222211      336666677666666543    2222222  777777777665432


Q ss_pred             -----chhhhcCCCCcEEEccCCcCccc----CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCC
Q 046050          464 -----PNWIDKLSHLSYLILANNNLEGE----VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG  534 (779)
Q Consensus       464 -----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~  534 (779)
                           +..+..+++|++|++++|++++.    ++..+..+++|++|++++|++.+..+..+.....              
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--------------  309 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL--------------  309 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT--------------
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc--------------
Confidence                 22223577888888888887754    4566667788888888888776433333211000              


Q ss_pred             CCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCC----CCccccCcccCcEEEcC
Q 046050          535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGE----IPFQIGYLNMIRALNLS  610 (779)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls  610 (779)
                                                              ...+.|+.|++++|.+++.    ++..+..+++|+.|+++
T Consensus       310 ----------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  349 (461)
T 1z7x_W          310 ----------------------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS  349 (461)
T ss_dssp             ----------------------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred             ----------------------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence                                                    0024677888888887754    35556667888888888


Q ss_pred             CCcCCccCchhhhC-----CCCCCEEECCCCcCcC----CCchhhhhcccCcEEEccCCcCccc
Q 046050          611 HNNLMGTIPSTFSH-----LSQIESLDLSYNMLQG----KIPTQLVELYALAIFSVAHNNLSGK  665 (779)
Q Consensus       611 ~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~  665 (779)
                      +|.+++..+..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            88887665555543     6788888888888875    6777888888888888888888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=266.85  Aligned_cols=265  Identities=21%  Similarity=0.245  Sum_probs=139.2

Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      +++.++++++.++ .+|..+.  +.+++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4555666665555 3444332  456667777777666555566677777777777777766666667777777777777


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccC--cCchhhhcCCCCcEEEccCCcCccc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSG--RIPNWIDKLSHLSYLILANNNLEGE  486 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~  486 (779)
                      +|+++......+  ++|++|++++|.+++..+..+...  |++|++++|.+..  ..+..+..+++|++|++++|+++. 
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            777663332222  445555555555554444433332  4444444444431  334445555555555555555543 


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050          487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK  566 (779)
Q Consensus       487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                      +|..+.  ++|++|++++|++++..|..+       .                                           
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~-------~-------------------------------------------  213 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASL-------K-------------------------------------------  213 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGG-------T-------------------------------------------
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHh-------c-------------------------------------------
Confidence            222221  455555555555543333332       0                                           


Q ss_pred             CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh
Q 046050          567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL  646 (779)
Q Consensus       567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  646 (779)
                               .+++|+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|
T Consensus       214 ---------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          214 ---------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             ---------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ---------CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence                     0234555555555555444445555555555555555555 444455555555555555555554444444


Q ss_pred             hh------cccCcEEEccCCcCc
Q 046050          647 VE------LYALAIFSVAHNNLS  663 (779)
Q Consensus       647 ~~------l~~L~~L~ls~N~l~  663 (779)
                      ..      .+.|+.+++++|++.
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCcccccccccccceEeecCccc
Confidence            22      244555555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.1e-30  Score=269.22  Aligned_cols=285  Identities=19%  Similarity=0.250  Sum_probs=137.6

Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      +++.++++++.++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3555555555554 3443332  455566666666554445555566666666666666655555556666666666666


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCcccc--CcCchhhhcCCCCcEEEccCCcCccc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDKLSHLSYLILANNNLEGE  486 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~  486 (779)
                      +|+++...+..+  ++|++|++++|++++.++..+...  |+.|++++|.++  +..+..+..+ +|++|++++|++++ 
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            666553322222  334444444444433332222221  333333333332  1333444444 55555555555553 


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050          487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK  566 (779)
Q Consensus       487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                      +|..+.  ++|+.|++++|++++..|..+       .                                           
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l-------~-------------------------------------------  214 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDL-------L-------------------------------------------  214 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSS-------T-------------------------------------------
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHh-------c-------------------------------------------
Confidence            232222  455555555555553322222       0                                           


Q ss_pred             CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh
Q 046050          567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL  646 (779)
Q Consensus       567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  646 (779)
                               .+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus       215 ---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          215 ---------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             ---------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             ---------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence                     0234555555555555544445555555555555555555 455555555555555555555554444444


Q ss_pred             hhc------ccCcEEEccCCcCc--ccCCCCCCcCCCCCCCcccCC
Q 046050          647 VEL------YALAIFSVAHNNLS--GKVPDRVGQFATFTENSYDGN  684 (779)
Q Consensus       647 ~~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~~~~N  684 (779)
                      ...      ..|+.|++++|++.  +..|.++..+..++.+.+++|
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            332      34555555555554  333343444444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=260.63  Aligned_cols=275  Identities=19%  Similarity=0.159  Sum_probs=158.3

Q ss_pred             cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050          309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN  388 (779)
Q Consensus       309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  388 (779)
                      ...+.+++.++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus        34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            34455555555 2333222  35666666666666444445666666666666666666555555666666666666666


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCccCcccCC-cCcC-CCcccEEEccCC-cCcccchhhHhhcceEEEccCccccCcCch
Q 046050          389 HLEGPIPANLCKLNFLTVLDLEVNNISGSLP-SCFS-SWLLTQVHLSRN-KIEGQLEDVFGDILVTLDLSYNRFSGRIPN  465 (779)
Q Consensus       389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  465 (779)
                      ++++..+..|.++++|++|++++|++++..+ ..+. +++|++|++++| .+...                      .+.
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------~~~  168 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----------------------QRK  168 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------------------CTT
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc----------------------CHH
Confidence            6665444446666666666666666664433 2333 455555555554 23322                      233


Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050          466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE  545 (779)
Q Consensus       466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  545 (779)
                      .+.++++|++|++++|++++..|..+..+++|++|++++|++. .+|...+.                            
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~----------------------------  219 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD----------------------------  219 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH----------------------------
T ss_pred             HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh----------------------------
Confidence            3444445555555555555444555555555555555555543 22322211                            


Q ss_pred             ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccc---cCcccCcEEEcCCCcCCc----cC
Q 046050          546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQI---GYLNMIRALNLSHNNLMG----TI  618 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~----~~  618 (779)
                                                    .+++|+.|++++|++++..+..+   .....++.++|+++.+++    .+
T Consensus       220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                          02345555555555554333322   234556677777777765    46


Q ss_pred             chhhhCCCCCCEEECCCCcCcCCCchh-hhhcccCcEEEccCCcCcccCCC
Q 046050          619 PSTFSHLSQIESLDLSYNMLQGKIPTQ-LVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       619 p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      |+.+.++++|+.|++++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            788889999999999999998 45544 58889999999999999988874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=252.00  Aligned_cols=256  Identities=17%  Similarity=0.197  Sum_probs=152.5

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELR  137 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~  137 (779)
                      +|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..|+++++|++|++++|+++ .++...|+.+++|++|+
T Consensus        53 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            45555555555533222 24445555555555555555444444555555555555555554 44443345555555555


Q ss_pred             cccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcc-hhhhCCCCCCEEEccCCC
Q 046050          138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFP-RFLYYQHELRYVDLSHMN  216 (779)
Q Consensus       138 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n~  216 (779)
                      +++|+++                                                  ...+ ..+..+++|++|++++|.
T Consensus       131 L~~n~l~--------------------------------------------------~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          131 LLGNPYK--------------------------------------------------TLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             CTTCCCS--------------------------------------------------SSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCCCc--------------------------------------------------ccCchhhhccCCCCcEEECCCCc
Confidence            5555443                                                  1111 245667778888888874


Q ss_pred             -CCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCccc
Q 046050          217 -LRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSI  295 (779)
Q Consensus       217 -l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~  295 (779)
                       +. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.++ .+|..++..+++|+.|++++|.+++..
T Consensus       161 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          161 TFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             SCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence             54 554444577888999999999888888888999999999999999997 788877766889999999999998665


Q ss_pred             CcccccccCCccccEEEccCCcCCc----cccccccCCCCCCEEEccCCcCccccCcc-ccCCCCCCEEEccCCccCC
Q 046050          296 PCSLHMTMGCFSLQILALSNNSLQG----HIFSRSFNLTNLVTLQLDANQFTGGIPEN-LLNCSLLGGLYLSDNHISG  368 (779)
Q Consensus       296 ~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~  368 (779)
                      +..+........++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+
T Consensus       239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            5544333333456666666665553    23344445555555555555555 23322 3455555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-27  Score=248.80  Aligned_cols=234  Identities=20%  Similarity=0.233  Sum_probs=133.5

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC--cchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEE
Q 046050          354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP--IPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVH  431 (779)
Q Consensus       354 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  431 (779)
                      +++++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.+....+....+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            3455555555555433333344555555555555554421  13444445555555555555543222222233344333


Q ss_pred             ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcc-c
Q 046050          432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSG-T  510 (779)
Q Consensus       432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~  510 (779)
                      +++|++++..+                     ...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ .
T Consensus       108 l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A          108 FQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CTTSEEESSTT---------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CCCCccccccc---------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            33333332211                     1334555666666666666665556666666666666666666654 2


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                      +|..+                                                           ..+++|++|++++|++
T Consensus       167 ~~~~~-----------------------------------------------------------~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          167 LPDIF-----------------------------------------------------------TELRNLTFLDLSQCQL  187 (306)
T ss_dssp             ECSCC-----------------------------------------------------------TTCTTCCEEECTTSCC
T ss_pred             chhHH-----------------------------------------------------------hhCcCCCEEECCCCCc
Confidence            33322                                                           0134566666666666


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc-cCcEEEccCCcCcccCC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY-ALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p  667 (779)
                      ++..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.++
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            666666777777777777777777766666777777777777777777777777777763 77777777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.4e-29  Score=286.64  Aligned_cols=300  Identities=16%  Similarity=0.082  Sum_probs=186.4

Q ss_pred             hCCCCCCEEEccCCCCCCcCchhhhhcCCC-CCEEECcCCc-cccc-CCCCCCCCCCccEEEccCCCCCcCCch---hhh
Q 046050          202 YYQHELRYVDLSHMNLRGEFPNWLLENNKE-LETLLLANNS-LSGF-FQMPVNPLKQLTTIDVSKNFIQGHIPT---GIG  275 (779)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~  275 (779)
                      ..+++|++|++++|.+++..+.++...++. |++|++++|. +... .+.....+++|++|++++|.+++.-..   .+.
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            367888888888887775555555333444 8888888876 2211 111123577888888888877644211   233


Q ss_pred             hcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCc---cccCcccc
Q 046050          276 AFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT---GGIPENLL  351 (779)
Q Consensus       276 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~  351 (779)
                      ..+++|++|++++|.+++.....+ ....++++|+.|++++|.+.+ ++..+..+++|++|+++.....   ...+..+.
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            347888888888888764333333 334456688888888888775 5567778888888888754322   23334567


Q ss_pred             CCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcc-hhhcCCCCCCEEEccCccCcc-cCCcCcC-CCccc
Q 046050          352 NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIP-ANLCKLNFLTVLDLEVNNISG-SLPSCFS-SWLLT  428 (779)
Q Consensus       352 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-~~~L~  428 (779)
                      .+++|+.++++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|+++ +.+.. .++.... +++|+
T Consensus       268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence            7788888888876443 567777788888888888888664433 345778888888888 33332 2222222 56788


Q ss_pred             EEEcc-----------CCcCcccchhhHh---hcceEEEccCccccCcCchhhhc-CCCCcEEEcc----CCcCccc---
Q 046050          429 QVHLS-----------RNKIEGQLEDVFG---DILVTLDLSYNRFSGRIPNWIDK-LSHLSYLILA----NNNLEGE---  486 (779)
Q Consensus       429 ~L~l~-----------~n~l~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---  486 (779)
                      +|+++           .|.+++.....+.   ..|+.|+++.|.+++..+..+.. +++|+.|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            88877           3455543322221   12666666666666554444444 6666666664    4455542   


Q ss_pred             --CcccccCCCCCCEEEccC
Q 046050          487 --VPVQLCLLKQLQLIDLSH  504 (779)
Q Consensus       487 --~~~~~~~l~~L~~L~Ls~  504 (779)
                        ++..+.++++|+.|++++
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHHHhCCCCCEEEEec
Confidence              223345566666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.7e-28  Score=253.12  Aligned_cols=251  Identities=21%  Similarity=0.222  Sum_probs=196.9

Q ss_pred             CEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccC---CcCcCCCcccEEEcc
Q 046050          357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL---PSCFSSWLLTQVHLS  433 (779)
Q Consensus       357 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~L~~L~l~  433 (779)
                      +.++.+++.++ .+|..+  .+++++|++++|.++...+..|.++++|+.|++++|.++...   ...+.+++       
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-------   79 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-------   79 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-------
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc-------
Confidence            45666666665 344333  246667777777666444444566666666666666665221   11111223       


Q ss_pred             CCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCC
Q 046050          434 RNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIP  512 (779)
Q Consensus       434 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p  512 (779)
                                     |++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus        80 ---------------L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           80 ---------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             ---------------CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             ---------------cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence                           666666666666 355568889999999999999997665 678999999999999999986665


Q ss_pred             chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050          513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG  592 (779)
Q Consensus       513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  592 (779)
                      ..+       +                                                    .++.|++|++++|.+++
T Consensus       144 ~~~-------~----------------------------------------------------~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A          144 GIF-------N----------------------------------------------------GLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             TTT-------T----------------------------------------------------TCTTCCEEECTTCEEGG
T ss_pred             hhc-------c----------------------------------------------------cCcCCCEEECCCCcccc
Confidence            544       1                                                    15689999999999986


Q ss_pred             -CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCC
Q 046050          593 -EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVG  671 (779)
Q Consensus       593 -~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  671 (779)
                       ..|..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             5789999999999999999999988899999999999999999999988888999999999999999999999998888


Q ss_pred             cC-CCCCCCcccCCCCCCCCCC
Q 046050          672 QF-ATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       672 ~~-~~l~~~~~~~N~~lc~~~l  692 (779)
                      .+ ..++.+.+++|++.|+|+.
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGG
T ss_pred             hhhccCCEEEccCCCeecccCh
Confidence            87 4899999999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.3e-27  Score=258.02  Aligned_cols=250  Identities=20%  Similarity=0.176  Sum_probs=213.6

Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEcc
Q 046050          355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLS  433 (779)
Q Consensus       355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~  433 (779)
                      ..+.++.++..++ .+|..+.  ++++.|++++|++++..+..|.++++|+.|++++|.+++..+..|. +++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4678899998888 5666554  6899999999999988888999999999999999999988877777 8899999999


Q ss_pred             CCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          434 RNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       434 ~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                      +|+++..++..|...  |++|++++|++++..+..+..+++|++|++++| .+....+..|..+++|++|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999998888777655  999999999998777778889999999999985 455555667889999999999999987 4


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                      +|. +                                                           ..+++|+.|||++|++
T Consensus       200 ~~~-~-----------------------------------------------------------~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          200 IPN-L-----------------------------------------------------------TPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CCC-C-----------------------------------------------------------TTCSSCCEEECTTSCC
T ss_pred             ccc-c-----------------------------------------------------------CCCcccCEEECCCCcc
Confidence            442 1                                                           1146788999999999


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|.-
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            988888999999999999999999988888999999999999999999988888888899999999999999887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.6e-29  Score=289.38  Aligned_cols=403  Identities=17%  Similarity=0.128  Sum_probs=231.3

Q ss_pred             chhhhhCCCCCCcEEeCCCCcc---------cc------------CCCCCccEEEccccccccccchhhcCC--CCcCEE
Q 046050            6 LLQSLWTPFPNLETLELRDYHL---------EL------------LNFTNLEVLILDGSALHIRFLQSIAVL--TSVKHL   62 (779)
Q Consensus         6 ~~~~~~~~~~~L~~L~Ls~~~~---------~~------------~~l~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L   62 (779)
                      .++.++..+++|++|+|+++..         ..            ..+++|++|+|++|.+++..+..+...  ++|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            4567788999999999988643         11            168899999999998887666666553  359999


Q ss_pred             ECCCCCCcccCCc-ccccCCCCCcEEEccCcccccc----cChhccCCCCCCEEeCCCCcCc----ccCCchhhcCCCCC
Q 046050           63 SMRNCYLYGTSDF-QGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDIASNQIT----GNISSSPLRYLTSL  133 (779)
Q Consensus        63 ~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~----~~i~~~~~~~l~~L  133 (779)
                      ++++|........ .....+++|++|+|++|.+++.    ++..+..+++|++|++++|.++    +.++. .+..+++|
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSL  222 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCC
Confidence            9999862111111 1223689999999999988765    3445678899999999999987    23333 45678999


Q ss_pred             CEEEcccccccccCCcccccCCCCCcEEECcCCceee--ecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEE
Q 046050          134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFV--EIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVD  211 (779)
Q Consensus       134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~  211 (779)
                      ++|++++|.+.+ ++ ..+.++++|+.|+++......  ......+..+.+|+.++++.+. ...+|..+..+++|++|+
T Consensus       223 ~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          223 VSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEE
T ss_pred             cEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEe
Confidence            999999998874 33 457778888888887532211  0111234445567777776643 234566666677777777


Q ss_pred             ccCCCCCCcCchhhhhcCCCCCEEECcCCcccc-cCCCCCCCCCCccEEEccC-----------CCCCcCCchhhhhcCC
Q 046050          212 LSHMNLRGEFPNWLLENNKELETLLLANNSLSG-FFQMPVNPLKQLTTIDVSK-----------NFIQGHIPTGIGAFLP  279 (779)
Q Consensus       212 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~-----------n~l~~~i~~~~~~~l~  279 (779)
                      +++|.+++.....++..+++|++|+++ +.+.. ..+.....+++|++|++++           +.+++.....+...++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            777776544443444666777777776 33322 1111223456666666662           3444222222233356


Q ss_pred             CCCEEEccCCcCCcccCcccccccCCccccEEEcc----CCcCCcc-----ccccccCCCCCCEEEccCCc--CccccCc
Q 046050          280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS----NNSLQGH-----IFSRSFNLTNLVTLQLDANQ--FTGGIPE  348 (779)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~  348 (779)
                      +|++|+++.|.+++..+..+  ...+++|+.|+++    .|.+++.     ++..+.++++|+.|++++|.  +++..+.
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            66666665555554332222  1123355666654    3344432     22223345555555554322  3322222


Q ss_pred             cc-cCCCCCCEEEccCCccCC-CcchhhhCCCCCceEEccCCCCCCC-cchhhcCCCCCCEEEccCccCc
Q 046050          349 NL-LNCSLLGGLYLSDNHISG-KIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       349 ~~-~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      .+ ..+++|++|++++|++++ .++..+..+++|++|++++|.+++. .+.....+++|+.|++++|+++
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            22 224555555555555543 1233334455555555555554322 2222234555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6e-27  Score=257.81  Aligned_cols=250  Identities=20%  Similarity=0.163  Sum_probs=213.3

Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEcc
Q 046050          355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLS  433 (779)
Q Consensus       355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~  433 (779)
                      ....++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|. +++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4578888888888 5665543  6899999999999988899999999999999999999988888777 8899999999


Q ss_pred             CCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          434 RNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       434 ~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                      +|+++..++..|...  |++|++++|++++..+..+.++++|++|++++| .+....+..|..+++|++|++++|++++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            999998888777655  999999999998777778889999999999984 5555556678899999999999999873 


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                      +|. +                                                           ..+++|+.|+|++|++
T Consensus       211 ~~~-~-----------------------------------------------------------~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          211 MPN-L-----------------------------------------------------------TPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCC-C-----------------------------------------------------------TTCTTCCEEECTTSCC
T ss_pred             ccc-c-----------------------------------------------------------cccccccEEECcCCcC
Confidence            332 1                                                           1146788999999999


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++.|.|.-
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            988888999999999999999999988888999999999999999999987778888899999999999999888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=7.8e-29  Score=259.11  Aligned_cols=247  Identities=20%  Similarity=0.156  Sum_probs=171.9

Q ss_pred             CCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEE
Q 046050          352 NCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVH  431 (779)
Q Consensus       352 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  431 (779)
                      .+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|++++..+    .++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence            34445555555555554444455555555555555555543332  5555555555555555553322    24566666


Q ss_pred             ccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccc-cCCCCCCEEEccCCcCccc
Q 046050          432 LSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQL-CLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       432 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~  510 (779)
                      +++|++++..+..+ ..|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++.
T Consensus       106 l~~n~l~~~~~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          106 AANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             CCSSCCSEEEECCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCCccCCcCcccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            66666655544432 227788888888887767778888899999999999987777666 4688999999999988743


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                       |...                                                            .+++|++|++++|++
T Consensus       185 -~~~~------------------------------------------------------------~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          185 -KGQV------------------------------------------------------------VFAKLKTLDLSSNKL  203 (317)
T ss_dssp             -ECCC------------------------------------------------------------CCTTCCEEECCSSCC
T ss_pred             -cccc------------------------------------------------------------ccccCCEEECCCCcC
Confidence             2111                                                            146788899999999


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc-CCCchhhhhcccCcEEEccCC-cCcccCCC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ-GKIPTQLVELYALAIFSVAHN-NLSGKVPD  668 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~  668 (779)
                      ++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++| .++|..|.
T Consensus       204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            84 5556888999999999999998 57888889999999999999998 778888889999999999844 56666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1e-26  Score=256.03  Aligned_cols=248  Identities=21%  Similarity=0.201  Sum_probs=217.0

Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      ....++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888888 6776654  689999999999998888999999999999999999998888999999999999999


Q ss_pred             CccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc--ceEEEccC-ccccCcCchhhhcCCCCcEEEccCCcCccc
Q 046050          411 VNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSY-NRFSGRIPNWIDKLSHLSYLILANNNLEGE  486 (779)
Q Consensus       411 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  486 (779)
                      +|++++..+..+. +++|++|++++|.++..++..|...  |+.|++++ |.+....+..+.++++|++|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9999988887777 8899999999999998888777766  99999998 455544556789999999999999999854


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050          487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK  566 (779)
Q Consensus       487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                       | .+..+++|+.|++++|++++..|..+       .                                           
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~-------------------------------------------  239 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSF-------H-------------------------------------------  239 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGG-------T-------------------------------------------
T ss_pred             -c-cccccccccEEECcCCcCcccCcccc-------c-------------------------------------------
Confidence             4 47889999999999999997666655       1                                           


Q ss_pred             CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC
Q 046050          567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI  642 (779)
Q Consensus       567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  642 (779)
                               .+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...-
T Consensus       240 ---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          240 ---------GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             ---------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             ---------CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence                     1568999999999999888999999999999999999999888888999999999999999987543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=252.98  Aligned_cols=249  Identities=26%  Similarity=0.208  Sum_probs=183.6

Q ss_pred             ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050          308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN  387 (779)
Q Consensus       308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  387 (779)
                      ...++.++..++ .+|..+  .++++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456666666666 334433  24667777777777665566666777777777777777665556666677777777777


Q ss_pred             CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050          388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW  466 (779)
Q Consensus       388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  466 (779)
                      |++++..+..|..+++|+.|++++|+++...+..+. +++|++|++++|                     +.+....+..
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~---------------------~~l~~i~~~~  180 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL---------------------KRLSYISEGA  180 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC---------------------TTCCEECTTT
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC---------------------CCcceeCcch
Confidence            766655555666666677777666666655554444 445555554442                     2333334457


Q ss_pred             hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 046050          467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA  546 (779)
Q Consensus       467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (779)
                      +.++++|++|++++|+++. +| .+..+++|+.|+|++|++++..|..+       .                       
T Consensus       181 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~-----------------------  228 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSF-------Q-----------------------  228 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTT-------T-----------------------
T ss_pred             hhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhh-------c-----------------------
Confidence            8889999999999999984 44 47899999999999999996656554       1                       


Q ss_pred             cCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCC
Q 046050          547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLS  626 (779)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  626 (779)
                                                   .+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..++
T Consensus       229 -----------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          229 -----------------------------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             -----------------------------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             -----------------------------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence                                         157899999999999998899999999999999999999988888999999


Q ss_pred             CCCEEECCCCcCcCC
Q 046050          627 QIESLDLSYNMLQGK  641 (779)
Q Consensus       627 ~L~~L~Ls~N~l~~~  641 (779)
                      +|+.|+|++|++...
T Consensus       280 ~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          280 HLERIHLHHNPWNCN  294 (440)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             CCCEEEcCCCCccCC
Confidence            999999999998753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.2e-26  Score=241.12  Aligned_cols=235  Identities=21%  Similarity=0.283  Sum_probs=182.0

Q ss_pred             CCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEE
Q 046050          329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLD  408 (779)
Q Consensus       329 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  408 (779)
                      .++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467788888888877 66777777888888888888887 67777888888888888888887 6677788888888888


Q ss_pred             ccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc
Q 046050          409 LEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP  488 (779)
Q Consensus       409 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  488 (779)
                      +++|++.+.+|..+..                           .         ..+..+.++++|++|++++|+++ .+|
T Consensus       157 L~~n~~~~~~p~~~~~---------------------------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp  199 (328)
T 4fcg_A          157 IRACPELTELPEPLAS---------------------------T---------DASGEHQGLVNLQSLRLEWTGIR-SLP  199 (328)
T ss_dssp             EEEETTCCCCCSCSEE---------------------------E---------C-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred             CCCCCCccccChhHhh---------------------------c---------cchhhhccCCCCCEEECcCCCcC-cch
Confidence            8887776666653221                           0         11123556777788888888777 666


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCc
Q 046050          489 VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT  568 (779)
Q Consensus       489 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (779)
                      ..+..+++|++|++++|+++ .+|+.+                                                     
T Consensus       200 ~~l~~l~~L~~L~L~~N~l~-~l~~~l-----------------------------------------------------  225 (328)
T 4fcg_A          200 ASIANLQNLKSLKIRNSPLS-ALGPAI-----------------------------------------------------  225 (328)
T ss_dssp             GGGGGCTTCCEEEEESSCCC-CCCGGG-----------------------------------------------------
T ss_pred             HhhcCCCCCCEEEccCCCCC-cCchhh-----------------------------------------------------
Confidence            77777788888888888877 355444                                                     


Q ss_pred             eeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhh
Q 046050          569 SYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVE  648 (779)
Q Consensus       569 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  648 (779)
                            ..+++|+.|++++|++.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|++|++.+.+|..+.+
T Consensus       226 ------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          226 ------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             ------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             ------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence                  11456778888888888788888888999999999999988899988999999999999999999999999999


Q ss_pred             cccCcEEEccCCcCc
Q 046050          649 LYALAIFSVAHNNLS  663 (779)
Q Consensus       649 l~~L~~L~ls~N~l~  663 (779)
                      +++|+.+++..|.+.
T Consensus       300 L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          300 LPANCIILVPPHLQA  314 (328)
T ss_dssp             SCTTCEEECCGGGSC
T ss_pred             ccCceEEeCCHHHHH
Confidence            999999998877665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.5e-26  Score=234.57  Aligned_cols=233  Identities=23%  Similarity=0.195  Sum_probs=129.1

Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc-CcccCCcCcC-CCcccEEEc
Q 046050          355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN-ISGSLPSCFS-SWLLTQVHL  432 (779)
Q Consensus       355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~L~~L~l  432 (779)
                      ++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+. +++|+    
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~----  108 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH----  108 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC----
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC----
Confidence            44444444444443333344444444444444444443334444444444444444443 3333233222 22233    


Q ss_pred             cCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCC
Q 046050          433 SRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIP  512 (779)
Q Consensus       433 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  512 (779)
                                        +|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus       109 ------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A          109 ------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             ------------------EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ------------------EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence                              23333333333344556666777777777777776666667777777777777777763222


Q ss_pred             chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050          513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG  592 (779)
Q Consensus       513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  592 (779)
                      ..+       .                                                    .++.|+.|++++|++++
T Consensus       171 ~~~-------~----------------------------------------------------~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          171 RAF-------R----------------------------------------------------GLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TTT-------T----------------------------------------------------TCTTCCEEECCSSCCCE
T ss_pred             HHh-------c----------------------------------------------------CccccCEEECCCCcccc
Confidence            112       0                                                    03455566666666665


Q ss_pred             CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCC
Q 046050          593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDR  669 (779)
Q Consensus       593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  669 (779)
                      ..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.+.+.|..|..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            56666777777778888888777666667777778888888888777544432 12234455556777777777764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-26  Score=238.20  Aligned_cols=250  Identities=22%  Similarity=0.190  Sum_probs=193.4

Q ss_pred             CEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCC
Q 046050          357 GGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRN  435 (779)
Q Consensus       357 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n  435 (779)
                      ++++.+++.++ .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++         
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---------   81 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL---------   81 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC---------
Confidence            56777777776 344433  45777777777777765556677777777777777777766555444 444         


Q ss_pred             cCcccchhhHhhcceEEEccCcc-ccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCch
Q 046050          436 KIEGQLEDVFGDILVTLDLSYNR-FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC  514 (779)
Q Consensus       436 ~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  514 (779)
                                   |++|++++|+ ++...+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus        82 -------------L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           82 -------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             -------------CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -------------CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence                         4555555554 55455777889999999999999999888999999999999999999998433332


Q ss_pred             hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCC
Q 046050          515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI  594 (779)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  594 (779)
                      +                                                           ..+++|+.|++++|++++..
T Consensus       149 ~-----------------------------------------------------------~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A          149 F-----------------------------------------------------------RDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             T-----------------------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred             h-----------------------------------------------------------ccCCCccEEECCCCcccccC
Confidence            3                                                           11567999999999999777


Q ss_pred             CccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCC
Q 046050          595 PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFA  674 (779)
Q Consensus       595 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  674 (779)
                      +..+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|++|++++|++.|.++.. ..+.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            778999999999999999999988999999999999999999999888888999999999999999999888752 2223


Q ss_pred             CCCCCcccCCCCCCCCC
Q 046050          675 TFTENSYDGNSLLCGQP  691 (779)
Q Consensus       675 ~l~~~~~~~N~~lc~~~  691 (779)
                      +++......+...|..|
T Consensus       249 ~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             HHHHCCSEECCCBEEES
T ss_pred             HHHhcccccCccccCCc
Confidence            44444555666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.8e-25  Score=250.29  Aligned_cols=263  Identities=24%  Similarity=0.285  Sum_probs=142.3

Q ss_pred             CCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEE
Q 046050          280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL  359 (779)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  359 (779)
                      +++.|++++|.++ .+|..+.     ++|+.|++++|.++. +|.   .+++|++|++++|+++ .+|.   .+++|++|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~-----~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP-----AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC-----TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred             CCcEEEecCCCcC-ccChhhC-----CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence            4667777777666 4444332     256666666666663 333   3556666666666665 3333   44566666


Q ss_pred             EccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcc
Q 046050          360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG  439 (779)
Q Consensus       360 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  439 (779)
                      ++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++.. .  ...+             
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~--~~~~-------------  162 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A--LPSE-------------  162 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C--CCTT-------------
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C--ccCC-------------
Confidence            666666653 222   34556666666666553 3321   355556666655555322 1  1233             


Q ss_pred             cchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhc
Q 046050          440 QLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTA  519 (779)
Q Consensus       440 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  519 (779)
                               |+.|++++|.+++ +|   ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++ .+|..     
T Consensus       163 ---------L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~-----  219 (622)
T 3g06_A          163 ---------LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL-----  219 (622)
T ss_dssp             ---------CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC-----
T ss_pred             ---------CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC-----
Confidence                     4455555555543 23   234556666666666553 222   1345666666666655 22221     


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCcccc
Q 046050          520 LGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIG  599 (779)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~  599 (779)
                                                                               +++|+.|++++|++++ +|   .
T Consensus       220 ---------------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          220 ---------------------------------------------------------PSGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCSC-CC---C
T ss_pred             ---------------------------------------------------------CCCCCEEEccCCccCc-CC---C
Confidence                                                                     2345566666666663 44   3


Q ss_pred             CcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCC
Q 046050          600 YLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDR  669 (779)
Q Consensus       600 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  669 (779)
                      .+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            3456666666666666 3443   4556666666666666 55666666666666666666666655553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.4e-26  Score=237.14  Aligned_cols=233  Identities=19%  Similarity=0.250  Sum_probs=169.0

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      +++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            5667777777776 55666777888888888888888 77777888888888888888888 677788888888888888


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCch
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN  465 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  465 (779)
                      +|++.+.+|..+..      .++         ++.+. +++                      |++|++++|+++ .+|.
T Consensus       159 ~n~~~~~~p~~~~~------~~~---------~~~~~~l~~----------------------L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          159 ACPELTELPEPLAS------TDA---------SGEHQGLVN----------------------LQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             EETTCCCCCSCSEE------EC----------CCCEEESTT----------------------CCEEEEEEECCC-CCCG
T ss_pred             CCCCccccChhHhh------ccc---------hhhhccCCC----------------------CCEEECcCCCcC-cchH
Confidence            88777777765543      000         01111 222                      333334444444 4555


Q ss_pred             hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 046050          466 WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGE  545 (779)
Q Consensus       466 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  545 (779)
                      .+..+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+       +.                     
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-------~~---------------------  251 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF-------GG---------------------  251 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT-------TC---------------------
T ss_pred             hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh-------cC---------------------
Confidence            66677777777777777774 44457777777777777777776666554       11                     


Q ss_pred             ccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCC
Q 046050          546 AVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHL  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  625 (779)
                                                     +++|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|+.++++
T Consensus       252 -------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          252 -------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             -------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             -------------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence                                           4567778888877777888888889999999999999999999999999


Q ss_pred             CCCCEEECCCCcCcC
Q 046050          626 SQIESLDLSYNMLQG  640 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~~  640 (779)
                      ++|+.+++..|.+..
T Consensus       301 ~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          301 PANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCEEECCGGGSCC
T ss_pred             cCceEEeCCHHHHHH
Confidence            999999998887763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.8e-27  Score=260.60  Aligned_cols=235  Identities=20%  Similarity=0.141  Sum_probs=131.0

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEcc
Q 046050          354 SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLS  433 (779)
Q Consensus       354 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~  433 (779)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|+.|++++|.+++..+.    ++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence            356666666666665555566666666666666666654443  56666666666666666543322    455566666


Q ss_pred             CCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEccCCcCcccCC
Q 046050          434 RNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLSHNNLSGTIP  512 (779)
Q Consensus       434 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p  512 (779)
                      +|.+++.++..+ ..|+.|++++|.+++..|..+..+++|+.|+|++|++++..|..+. .+++|+.|+|++|.+++. |
T Consensus       108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence            655555444322 2256666666666655555666666666666666666665555554 566666666666666532 1


Q ss_pred             chhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCC
Q 046050          513 SCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG  592 (779)
Q Consensus       513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  592 (779)
                      ...                                                            .++.|+.|+|++|.+++
T Consensus       186 ~~~------------------------------------------------------------~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          186 GQV------------------------------------------------------------VFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CCC------------------------------------------------------------CCTTCCEEECCSSCCCE
T ss_pred             ccc------------------------------------------------------------cCCCCCEEECCCCCCCC
Confidence            100                                                            03445555555555553


Q ss_pred             CCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCc-CCCchhhhhcccCcEEEcc
Q 046050          593 EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ-GKIPTQLVELYALAIFSVA  658 (779)
Q Consensus       593 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  658 (779)
                       +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       206 -~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          206 -MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             23335555555555555555553 4444555555555555555555 3444455555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=8.9e-28  Score=251.08  Aligned_cols=264  Identities=19%  Similarity=0.140  Sum_probs=217.4

Q ss_pred             CCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCC
Q 046050          356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN  435 (779)
Q Consensus       356 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  435 (779)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+ ...+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence            4556677777765555666778899999999999998888999999999999999999997665 444889999999999


Q ss_pred             cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050          436 KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL  515 (779)
Q Consensus       436 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  515 (779)
                      .+++.++.   ..|++|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|++++..|..+
T Consensus        91 ~l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           91 YVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             ccccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            99987643   4499999999999976544   46889999999999998888899999999999999999986555544


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050          516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP  595 (779)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  595 (779)
                      ..                                                          .++.|++|++++|++++. |
T Consensus       165 ~~----------------------------------------------------------~l~~L~~L~L~~N~l~~~-~  185 (317)
T 3o53_A          165 AA----------------------------------------------------------SSDTLEHLNLQYNFIYDV-K  185 (317)
T ss_dssp             GG----------------------------------------------------------GTTTCCEEECTTSCCCEE-E
T ss_pred             hh----------------------------------------------------------ccCcCCEEECCCCcCccc-c
Confidence            11                                                          146799999999999954 3


Q ss_pred             ccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc-ccCCCCCCcCC
Q 046050          596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS-GKVPDRVGQFA  674 (779)
Q Consensus       596 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~  674 (779)
                       ....+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..+.
T Consensus       186 -~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          186 -GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             -CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             -cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence             33459999999999999995 5555999999999999999999 57888999999999999999999 55666556666


Q ss_pred             CCCCCcccCCCCCC
Q 046050          675 TFTENSYDGNSLLC  688 (779)
Q Consensus       675 ~l~~~~~~~N~~lc  688 (779)
                      .++.+...+++.+.
T Consensus       263 ~L~~l~l~~~~~l~  276 (317)
T 3o53_A          263 RVQTVAKQTVKKLT  276 (317)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cceEEECCCchhcc
Confidence            66666666544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.9e-27  Score=257.23  Aligned_cols=253  Identities=21%  Similarity=0.179  Sum_probs=210.5

Q ss_pred             cchhhhCC----CCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhH
Q 046050          370 IPKWLGNL----SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVF  445 (779)
Q Consensus       370 ~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  445 (779)
                      +|..+..+    ++|++|++++|.+++..|..|..+++|+.|++++|.+++..| ...+++|+.|++++|.+++.++.  
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--   98 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG--   98 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC--
Confidence            34445444    489999999999999888999999999999999999997776 44489999999999999987754  


Q ss_pred             hhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCC
Q 046050          446 GDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNY  525 (779)
Q Consensus       446 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~  525 (779)
                       ..|+.|++++|.+++..+.   .+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+..        
T Consensus        99 -~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------  166 (487)
T 3oja_A           99 -PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------  166 (487)
T ss_dssp             -TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------
T ss_pred             -CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------
Confidence             4599999999999976654   4689999999999999998999999999999999999999877766521        


Q ss_pred             CCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCc
Q 046050          526 DSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIR  605 (779)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~  605 (779)
                                                                        .++.|+.|+|++|.+++. | ....+++|+
T Consensus       167 --------------------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~  194 (487)
T 3oja_A          167 --------------------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLK  194 (487)
T ss_dssp             --------------------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred             --------------------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCC
Confidence                                                              157899999999999965 3 344699999


Q ss_pred             EEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc-ccCCCCCCcCCCCCCCccc--
Q 046050          606 ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS-GKVPDRVGQFATFTENSYD--  682 (779)
Q Consensus       606 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~~~~~--  682 (779)
                      .|+|++|.+++..| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..+..+...  
T Consensus       195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence            99999999996544 59999999999999999995 7778999999999999999998 4555545555555555554  


Q ss_pred             -----CCCCCCCCC
Q 046050          683 -----GNSLLCGQP  691 (779)
Q Consensus       683 -----~N~~lc~~~  691 (779)
                           +|+..|.++
T Consensus       273 ~~~~~~~~~~c~~~  286 (487)
T 3oja_A          273 KKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHTSSSSCCCSST
T ss_pred             ccccCCCcccccCC
Confidence                 778777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.8e-27  Score=246.63  Aligned_cols=252  Identities=22%  Similarity=0.234  Sum_probs=166.2

Q ss_pred             CCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccC-CCcchhhh-------CCCCCceEEccCCCCCCCcchhh-
Q 046050          328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHIS-GKIPKWLG-------NLSNLVDIIMPNNHLEGPIPANL-  398 (779)
Q Consensus       328 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-  398 (779)
                      ..++|+.|++++|.+  .+|..+...  |+.|++++|.++ ..+|..+.       ++++|++|++++|.+++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344555666666655  344433322  555555555552 23333333       44555555555555554444443 


Q ss_pred             -cCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEE
Q 046050          399 -CKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYL  476 (779)
Q Consensus       399 -~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  476 (779)
                       ..+++|++|++++|++++. |..+. +..                 .....|++|++++|++++..+..+..+++|++|
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-----------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  178 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQ-----------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL  178 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHT-----------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHH-----------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence             4445555555555554433 22111 100                 000237788888888887777888899999999


Q ss_pred             EccCCcCccc--Ccccc--cCCCCCCEEEccCCcCcc--cCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 046050          477 ILANNNLEGE--VPVQL--CLLKQLQLIDLSHNNLSG--TIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPS  550 (779)
Q Consensus       477 ~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (779)
                      ++++|++.+.  .+..+  ..+++|++|++++|++++  .++..++.                                 
T Consensus       179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------------------------  225 (312)
T 1wwl_A          179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---------------------------------  225 (312)
T ss_dssp             ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---------------------------------
T ss_pred             ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh---------------------------------
Confidence            9999998765  23334  788999999999999873  12222211                                 


Q ss_pred             CCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC-ccccCcccCcEEEcCCCcCCccCchhhhCCCCCC
Q 046050          551 GSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP-FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE  629 (779)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  629 (779)
                                               .++.|+.||+++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|+
T Consensus       226 -------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~  277 (312)
T 1wwl_A          226 -------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS  277 (312)
T ss_dssp             -------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred             -------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence                                     14678899999999998775 56677899999999999998 7777766  8999


Q ss_pred             EEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050          630 SLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       630 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  664 (779)
                      .|||++|++++. |. +..+++|++|++++|++++
T Consensus       278 ~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          278 VLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             EEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999999999866 66 8899999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1e-24  Score=245.62  Aligned_cols=270  Identities=24%  Similarity=0.316  Sum_probs=211.8

Q ss_pred             CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050          254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV  333 (779)
Q Consensus       254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  333 (779)
                      .+++.|++++|.++ .+|..++   ++|+.|++++|.++ .+|.      .+++|++|++++|.+++ +|.   .+++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA------LPPELRTLEVSGNQLTS-LPV---LPPGLL  104 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC------CCTTCCEEEECSCCCSC-CCC---CCTTCC
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC------cCCCCCEEEcCCCcCCc-CCC---CCCCCC
Confidence            35899999999999 8998765   69999999999998 4554      23589999999999985 444   689999


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050          334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN  413 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  413 (779)
                      +|++++|++++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.
T Consensus       105 ~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          105 ELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             EEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence            99999999984 454   56889999999999995 5543   5899999999999985 343   45789999999999


Q ss_pred             CcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccC
Q 046050          414 ISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCL  493 (779)
Q Consensus       414 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  493 (779)
                      +++. |  ..+++|+.|++++|.++++                       |.   .+++|+.|++++|.++. +|.   .
T Consensus       173 l~~l-~--~~~~~L~~L~Ls~N~l~~l-----------------------~~---~~~~L~~L~L~~N~l~~-l~~---~  219 (622)
T 3g06_A          173 LTSL-P--MLPSGLQELSVSDNQLASL-----------------------PT---LPSELYKLWAYNNRLTS-LPA---L  219 (622)
T ss_dssp             CSCC-C--CCCTTCCEEECCSSCCSCC-----------------------CC---CCTTCCEEECCSSCCSS-CCC---C
T ss_pred             CCCC-c--ccCCCCcEEECCCCCCCCC-----------------------CC---ccchhhEEECcCCcccc-cCC---C
Confidence            9864 3  2245566666655555432                       22   23677788888887773 333   2


Q ss_pred             CCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeec
Q 046050          494 LKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQ  573 (779)
Q Consensus       494 l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (779)
                      +++|+.|++++|++++ +|..                                                           
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp~~-----------------------------------------------------------  239 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LPVL-----------------------------------------------------------  239 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC-----------------------------------------------------------
T ss_pred             CCCCCEEEccCCccCc-CCCC-----------------------------------------------------------
Confidence            4678888888888873 4421                                                           


Q ss_pred             ccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhccc
Q 046050          574 GRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYA  651 (779)
Q Consensus       574 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  651 (779)
                         +++|+.|++++|+|+ .+|.   .+++|+.|+|++|+++ .+|..|.++++|+.|+|++|++++.+|..+..++.
T Consensus       240 ---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          240 ---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             ---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             ---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence               356888899999888 5665   5788999999999999 77889999999999999999999999998887763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2e-27  Score=272.14  Aligned_cols=378  Identities=15%  Similarity=0.055  Sum_probs=204.4

Q ss_pred             hcCCCCCEEECcCCcccccCCCCCC-CCCCccEEEccCC-CCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-cccc
Q 046050          227 ENNKELETLLLANNSLSGFFQMPVN-PLKQLTTIDVSKN-FIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTM  303 (779)
Q Consensus       227 ~~~~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~  303 (779)
                      ..+++|++|++++|.+++.....+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+ ....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4456666666666665543333332 3566666666666 33311122233235666666666666554444444 3333


Q ss_pred             CCccccEEEccCCc--CCcc-ccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc-------cCCCcchh
Q 046050          304 GCFSLQILALSNNS--LQGH-IFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH-------ISGKIPKW  373 (779)
Q Consensus       304 ~~~~L~~L~ls~n~--l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~  373 (779)
                      .+++|++|++++|.  +... +......+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ ++..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence            55566666666665  2211 11112345667777776662222345555566666666644332       221 3335


Q ss_pred             hhCCCCCceE-EccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc-Cc-CCCcccEEEccCCcCcccchhhHh---h
Q 046050          374 LGNLSNLVDI-IMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS-CF-SSWLLTQVHLSRNKIEGQLEDVFG---D  447 (779)
Q Consensus       374 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~---~  447 (779)
                      +.++++|+.+ .+.+... +.++..+..+++|+.|++++|.+++.... .. .+++|++|++++| +.......+.   .
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            6666666666 3332221 13344444566677777776665432211 11 2566777777666 3322222221   1


Q ss_pred             cceEEEcc---------CccccCcCchhh-hcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEcc--C----CcCccc
Q 046050          448 ILVTLDLS---------YNRFSGRIPNWI-DKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLS--H----NNLSGT  510 (779)
Q Consensus       448 ~L~~L~L~---------~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~  510 (779)
                      .|+.|+++         .+.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++  +    +.++ .
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~  417 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-L  417 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-C
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-C
Confidence            26777663         234443222222 3477788887777777765555444 47778888887  3    3443 1


Q ss_pred             CCch-hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCc
Q 046050          511 IPSC-LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNK  589 (779)
Q Consensus       511 ~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  589 (779)
                      .|.. -+..                                                      ....+++|+.|++++ .
T Consensus       418 ~~~~~~~~~------------------------------------------------------l~~~~~~L~~L~L~~-~  442 (594)
T 2p1m_B          418 EPLDIGFGA------------------------------------------------------IVEHCKDLRRLSLSG-L  442 (594)
T ss_dssp             CCTHHHHHH------------------------------------------------------HHHHCTTCCEEECCS-S
T ss_pred             CchhhHHHH------------------------------------------------------HHhhCCCccEEeecC-c
Confidence            1110 0000                                                      001145677788866 5


Q ss_pred             cCCCCCccccC-cccCcEEEcCCCcCCccCchhh-hCCCCCCEEECCCCcCcCCCch-hhhhcccCcEEEccCCcCc
Q 046050          590 LTGEIPFQIGY-LNMIRALNLSHNNLMGTIPSTF-SHLSQIESLDLSYNMLQGKIPT-QLVELYALAIFSVAHNNLS  663 (779)
Q Consensus       590 l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~  663 (779)
                      +++..+..+.. +++|+.|+|++|.+++..+..+ .++++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            66544445544 7778888888888876555555 6678888888888888644443 3344778888888888774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5e-26  Score=237.20  Aligned_cols=130  Identities=21%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCC-cccccccc-------CCCCCCEEEccCCcCccccCcc
Q 046050          278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ-GHIFSRSF-------NLTNLVTLQLDANQFTGGIPEN  349 (779)
Q Consensus       278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~  349 (779)
                      .++|+.|++++|.+  .+|..+..     .|+.|++++|.++ ..++..+.       ++++|++|++++|++++..|..
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             CCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34666777777776  45544321     2666666666663 33344333       4666667777766666666655


Q ss_pred             c--cCCCCCCEEEccCCccCCCcchhhhCC-----CCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050          350 L--LNCSLLGGLYLSDNHISGKIPKWLGNL-----SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       350 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      +  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            4  5666666666666666654 5555554     56666666666666555556666666666666666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2e-27  Score=272.15  Aligned_cols=409  Identities=15%  Similarity=0.121  Sum_probs=232.9

Q ss_pred             hhhhCCCCCCcEEeCCCCcc----c-----------------cCCCCCccEEEccccccccccchhhc-CCCCcCEEECC
Q 046050            8 QSLWTPFPNLETLELRDYHL----E-----------------LLNFTNLEVLILDGSALHIRFLQSIA-VLTSVKHLSMR   65 (779)
Q Consensus         8 ~~~~~~~~~L~~L~Ls~~~~----~-----------------~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~   65 (779)
                      ..++..|++|++|+|+++..    .                 ...+++|++|++++|.+++..+..+. .+++|++|+++
T Consensus        59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS  138 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence            44567778888888887652    1                 11355666666666666555444443 45666666666


Q ss_pred             CC-CCcccCCcccccCCCCCcEEEccCcccccccChhc----cCCCCCCEEeCCCCcCcccCCchh----hcCCCCCCEE
Q 046050           66 NC-YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCL----VNMTSLRILDIASNQITGNISSSP----LRYLTSLEEL  136 (779)
Q Consensus        66 ~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~i~~~~----~~~l~~L~~L  136 (779)
                      +| .+........+..+++|++|++++|.+++..+..+    ..+++|++|++++|. . .+....    +..+++|++|
T Consensus       139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEE
T ss_pred             CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEE
Confidence            66 22211011122346666666666666554333322    245566666666665 1 222211    2334666666


Q ss_pred             Ecccc-cccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEE-EccC
Q 046050          137 RVSNN-QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYV-DLSH  214 (779)
Q Consensus       137 ~Ls~n-~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L-~Ls~  214 (779)
                      ++++| .+++ + ...+..+++|+.|+++.+..                  ++..+.+. .++..+.++++|+.| .+.+
T Consensus       217 ~L~~~~~~~~-l-~~~~~~~~~L~~L~l~~~~~------------------~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~  275 (594)
T 2p1m_B          217 KLNRAVPLEK-L-ATLLQRAPQLEELGTGGYTA------------------EVRPDVYS-GLSVALSGCKELRCLSGFWD  275 (594)
T ss_dssp             ECCTTSCHHH-H-HHHHHHCTTCSEEECSBCCC------------------CCCHHHHH-HHHHHHHTCTTCCEEECCBT
T ss_pred             ecCCCCcHHH-H-HHHHhcCCcceEcccccccC------------------ccchhhHH-HHHHHHhcCCCcccccCCcc
Confidence            66665 2221 1 12233444444444333211                  01111122 134466777777777 3443


Q ss_pred             CCCCCcCchhhhhcCCCCCEEECcCCcccccCCC-CCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccC-----
Q 046050          215 MNLRGEFPNWLLENNKELETLLLANNSLSGFFQM-PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISR-----  288 (779)
Q Consensus       215 n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~-----  288 (779)
                      .... .++.. +..+++|++|++++|.+++.... .+..+++|++|++++| +.+.....+...+++|++|++.+     
T Consensus       276 ~~~~-~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g  352 (594)
T 2p1m_B          276 AVPA-YLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV  352 (594)
T ss_dssp             CCGG-GGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred             cchh-hHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence            3222 34433 24567788888888775542211 2346778888888877 43222223333477888888743     


Q ss_pred             ----CcCCcccCcccccccCCccccEEEccCCcCCcccccccc-CCCCCCEEEcc--C----CcCccc-----cCccccC
Q 046050          289 ----NVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSF-NLTNLVTLQLD--A----NQFTGG-----IPENLLN  352 (779)
Q Consensus       289 ----n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~  352 (779)
                          +.+++....  ....++++|+.|.++.+.+++.....+. .+++|+.|+++  +    +.+++.     ++..+..
T Consensus       353 ~~~~~~l~~~~l~--~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~  430 (594)
T 2p1m_B          353 MEPNVALTEQGLV--SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH  430 (594)
T ss_dssp             SSCSSCCCHHHHH--HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred             cccCCCCCHHHHH--HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence                233321111  1223456888888888888765555554 57888888888  3    445421     1122567


Q ss_pred             CCCCCEEEccCCccCCCcchhhhC-CCCCceEEccCCCCCCCcchhh-cCCCCCCEEEccCccCcccCCc-CcC-CCccc
Q 046050          353 CSLLGGLYLSDNHISGKIPKWLGN-LSNLVDIIMPNNHLEGPIPANL-CKLNFLTVLDLEVNNISGSLPS-CFS-SWLLT  428 (779)
Q Consensus       353 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~-~~~L~  428 (779)
                      +++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ... +++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            78899999977 666555555555 8889999999998876555555 6688999999999988644332 222 67899


Q ss_pred             EEEccCCcCcccchhhH
Q 046050          429 QVHLSRNKIEGQLEDVF  445 (779)
Q Consensus       429 ~L~l~~n~l~~~~~~~~  445 (779)
                      .|++++|.++......+
T Consensus       510 ~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             EEEEESSCCBHHHHHHH
T ss_pred             EEeeeCCCCCHHHHHHH
Confidence            99999998855444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.3e-24  Score=216.90  Aligned_cols=226  Identities=22%  Similarity=0.206  Sum_probs=151.6

Q ss_pred             EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCc
Q 046050          358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNK  436 (779)
Q Consensus       358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~  436 (779)
                      .++..+..+. .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|++++..+..+. +++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3444555554 3444332  4677777777777755555677777777777777777665554444 4455555444444


Q ss_pred             CcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc-CCchh
Q 046050          437 IEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT-IPSCL  515 (779)
Q Consensus       437 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~  515 (779)
                                            +++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+
T Consensus        88 ----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~  145 (276)
T 2z62_A           88 ----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (276)
T ss_dssp             ----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence                                  4444455566677777777777777766665677777777777777777642 34444


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050          516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP  595 (779)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  595 (779)
                                                                                 ..+++|++|++++|++++..+
T Consensus       146 -----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          146 -----------------------------------------------------------SNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             -----------------------------------------------------------GGCTTCCEEECCSSCCCEECG
T ss_pred             -----------------------------------------------------------ccCCCCCEEECCCCCCCcCCH
Confidence                                                                       114567777777777776666


Q ss_pred             ccccCcccCc----EEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          596 FQIGYLNMIR----ALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       596 ~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ..+..+++|+    .|++++|++++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            6666666666    788888888865555544 44788888888888877666778888888888888888888875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2e-23  Score=212.63  Aligned_cols=204  Identities=20%  Similarity=0.218  Sum_probs=122.7

Q ss_pred             CCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccC
Q 046050          403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILAN  480 (779)
Q Consensus       403 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  480 (779)
                      ..+.++++++.++.+ |..+ .+.+++|++++|++++.++..+...  |++|++++|.++...+..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            467778887777743 3322 2456777777777666655555443  66666666666655445556666666666666


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccce
Q 046050          481 NNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEES  560 (779)
Q Consensus       481 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (779)
                      |++++..+..|..+++|++|++++|++++..|..+                                             
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------  129 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---------------------------------------------  129 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---------------------------------------------
Confidence            66665555556666666666666666653322222                                             


Q ss_pred             EEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC
Q 046050          561 VEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG  640 (779)
Q Consensus       561 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  640 (779)
                                    ..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++
T Consensus       130 --------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          130 --------------DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             --------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence                          013456666666666665444556666666666666666665555556666666666666666665


Q ss_pred             CCchhhhhcccCcEEEccCCcCcccCC
Q 046050          641 KIPTQLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       641 ~~p~~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      ..+..+..+++|+.|++++|++.|.++
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCHHHhccccCCCEEEecCCCeeCCCc
Confidence            555556666666666666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.1e-23  Score=214.26  Aligned_cols=106  Identities=23%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             hcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcE
Q 046050          398 LCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSY  475 (779)
Q Consensus       398 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~  475 (779)
                      +.++++++.++++++.++..++...  +.++.|++++|.+++..+..+...  |+.|++++|.+++..+.  ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            4567778888888888775443322  456666666666655544444333  44455555444432211  34444444


Q ss_pred             EEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          476 LILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       476 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      |++++|+++ .+|..+..+++|++|++++|+++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT  113 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCc
Confidence            444444444 33334444444444444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.8e-23  Score=214.00  Aligned_cols=205  Identities=23%  Similarity=0.215  Sum_probs=164.4

Q ss_pred             ccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccC
Q 046050          427 LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSH  504 (779)
Q Consensus       427 L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  504 (779)
                      +++|++++|.+++..+..+...  |++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            4444444444444333333322  56666666666656667788999999999999999988889999999999999999


Q ss_pred             CcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEe
Q 046050          505 NNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLD  584 (779)
Q Consensus       505 N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  584 (779)
                      |++++..+..+                                                           ..++.|++|+
T Consensus       110 n~l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~  130 (276)
T 2z62_A          110 TNLASLENFPI-----------------------------------------------------------GHLKTLKELN  130 (276)
T ss_dssp             SCCCCSTTCCC-----------------------------------------------------------TTCTTCCEEE
T ss_pred             CCccccCchhc-----------------------------------------------------------ccCCCCCEEE
Confidence            99985433222                                                           1157899999


Q ss_pred             ccCCccCCC-CCccccCcccCcEEEcCCCcCCccCchhhhCCCCCC----EEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050          585 LSCNKLTGE-IPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIE----SLDLSYNMLQGKIPTQLVELYALAIFSVAH  659 (779)
Q Consensus       585 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  659 (779)
                      +++|++++. +|..++.+++|+.|++++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~  209 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDT  209 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCS
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCC
Confidence            999999974 699999999999999999999988888888888887    999999999976666554 45899999999


Q ss_pred             CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      |++++..+..+..+..++.+.+.+||+.|+|+
T Consensus       210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99998777767889999999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.8e-23  Score=208.31  Aligned_cols=206  Identities=21%  Similarity=0.216  Sum_probs=168.7

Q ss_pred             cccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050          426 LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN  505 (779)
Q Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  505 (779)
                      ..+.++++++.++.++. .+...++.|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            47788999998887554 33345889999999998777778888999999999999998777777888899999999999


Q ss_pred             cCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEec
Q 046050          506 NLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDL  585 (779)
Q Consensus       506 ~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  585 (779)
                      ++++ +|...+.                                                          .+++|++|++
T Consensus        96 ~l~~-~~~~~~~----------------------------------------------------------~l~~L~~L~l  116 (270)
T 2o6q_A           96 KLQA-LPIGVFD----------------------------------------------------------QLVNLAELRL  116 (270)
T ss_dssp             CCCC-CCTTTTT----------------------------------------------------------TCSSCCEEEC
T ss_pred             cCCc-CCHhHcc----------------------------------------------------------cccCCCEEEC
Confidence            8874 3332211                                                          1467888999


Q ss_pred             cCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050          586 SCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK  665 (779)
Q Consensus       586 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  665 (779)
                      ++|++++..+..|+.+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            99999987778888899999999999999877777788899999999999999877777788889999999999999876


Q ss_pred             CCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          666 VPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       666 ~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      .+..+..+..++.+.+.+||+.|+|.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CHHHhccccCCCEEEecCCCeeCCCc
Confidence            66667778888888899999998875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2e-22  Score=207.00  Aligned_cols=130  Identities=25%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             hCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEE
Q 046050          375 GNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLD  453 (779)
Q Consensus       375 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  453 (779)
                      .+++++++++++++.++ .+|..+.  +.++.|++++|.+++..+..+. +++|+.|++++|.+++..+......|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            34444555555555444 2332221  3445555555555444443333 444555555555544443321111255555


Q ss_pred             ccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          454 LSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       454 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      +++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence            5555544 33444444455555555555554444444444444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1e-22  Score=207.55  Aligned_cols=225  Identities=22%  Similarity=0.208  Sum_probs=164.5

Q ss_pred             CCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCC
Q 046050          356 LGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRN  435 (779)
Q Consensus       356 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  435 (779)
                      +..+++..+.+.+.  .....+++|+.|++++|.+.. + ..+..+++|+.|++++|.+++. +....+++         
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~---------   86 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTN---------   86 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTT---------
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCC---------
Confidence            33444555554432  224456677777777776652 2 2356667777777777766642 22222333         


Q ss_pred             cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050          436 KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL  515 (779)
Q Consensus       436 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  515 (779)
                                   |++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus        87 -------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           87 -------------LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             -------------CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence                         5566666666665666667888889999999999887777778888999999999998884333322


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC
Q 046050          516 YKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP  595 (779)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  595 (779)
                                                                                 ..+++|+.|++++|++++..+
T Consensus       154 -----------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          154 -----------------------------------------------------------DKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             -----------------------------------------------------------TTCTTCCEEECCSSCCCCCCT
T ss_pred             -----------------------------------------------------------ccCccCCEEECCCCCcCccCH
Confidence                                                                       114678889999999997777


Q ss_pred             ccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC
Q 046050          596 FQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF  673 (779)
Q Consensus       596 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  673 (779)
                      ..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.+..       +.|++++++.|.++|.+|..++.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCccccc
Confidence            77899999999999999999888888999999999999999998654       468899999999999999865543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.7e-23  Score=221.34  Aligned_cols=265  Identities=19%  Similarity=0.180  Sum_probs=137.5

Q ss_pred             EEccCCcCCccccccccCCCCCCEEEccCCcCccccC----ccccCCC-CCCEEEccCCccCCCcchhhhCC-----CCC
Q 046050          311 LALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIP----ENLLNCS-LLGGLYLSDNHISGKIPKWLGNL-----SNL  380 (779)
Q Consensus       311 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L  380 (779)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    ..+.+++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555544444446666666666554433    4445555 56666666666655444444443     556


Q ss_pred             ceEEccCCCCCCCcchhh----cCC-CCCCEEEccCccCcccCCcCcC------CCcccEEEccCCcCcccchhhHhhcc
Q 046050          381 VDIIMPNNHLEGPIPANL----CKL-NFLTVLDLEVNNISGSLPSCFS------SWLLTQVHLSRNKIEGQLEDVFGDIL  449 (779)
Q Consensus       381 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~~~~~~L  449 (779)
                      ++|++++|.+++..+..+    ..+ ++|++|++++|++++..+..+.      ..+|++|++++|.+++.....     
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-----  157 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE-----  157 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence            666666666554444322    222 5556666665555543332211      124444444444444322222     


Q ss_pred             eEEEccCccccCcCchhhhcCC-CCcEEEccCCcCcccCcccc----cCC-CCCCEEEccCCcCcccCCchhhhhccCCC
Q 046050          450 VTLDLSYNRFSGRIPNWIDKLS-HLSYLILANNNLEGEVPVQL----CLL-KQLQLIDLSHNNLSGTIPSCLYKTALGEG  523 (779)
Q Consensus       450 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~  523 (779)
                                   ++..+..++ +|++|+|++|++++..+..+    ..+ ++|++|||++|++++.....+....    
T Consensus       158 -------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l----  220 (362)
T 3goz_A          158 -------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF----  220 (362)
T ss_dssp             -------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----
T ss_pred             -------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH----
Confidence                         122333443 67777777776665554333    333 4677777777776632211110000    


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCC----cccc
Q 046050          524 NYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIP----FQIG  599 (779)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p----~~l~  599 (779)
                                                                        ....+.|++|||++|.+++..+    ..+.
T Consensus       221 --------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          221 --------------------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             --------------------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             --------------------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence                                                              0001356666666666664433    2345


Q ss_pred             CcccCcEEEcCCCcCCccCc-------hhhhCCCCCCEEECCCCcCcCCCchhhh
Q 046050          600 YLNMIRALNLSHNNLMGTIP-------STFSHLSQIESLDLSYNMLQGKIPTQLV  647 (779)
Q Consensus       600 ~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  647 (779)
                      .+++|+.|+|++|.+.+..+       ..+..+++|+.||+++|++....+..+.
T Consensus       251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred             cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence            56777777777777443333       3456677777788888877766554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.3e-23  Score=220.70  Aligned_cols=255  Identities=19%  Similarity=0.190  Sum_probs=164.2

Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccCCccCCCcc----hhhhCCC-CCceEEccCCCCCCCcchhhcCC-----CCC
Q 046050          335 LQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIP----KWLGNLS-NLVDIIMPNNHLEGPIPANLCKL-----NFL  404 (779)
Q Consensus       335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L  404 (779)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4455555555555544444446666666665554444    4455555 55555555555554444444432     555


Q ss_pred             CEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHh-------hcceEEEccCccccCcCchhh----hc-CCC
Q 046050          405 TVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG-------DILVTLDLSYNRFSGRIPNWI----DK-LSH  472 (779)
Q Consensus       405 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~----~~-l~~  472 (779)
                      ++|++++|.++                       +..+..+.       ..|++|++++|++++..+..+    .. .++
T Consensus        83 ~~L~Ls~n~l~-----------------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  139 (362)
T 3goz_A           83 TSLNLSGNFLS-----------------------YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS  139 (362)
T ss_dssp             CEEECCSSCGG-----------------------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred             cEEECcCCcCC-----------------------hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence            55555555554                       43333221       126666666666665444333    33 368


Q ss_pred             CcEEEccCCcCcccC----cccccCCC-CCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCccccccc
Q 046050          473 LSYLILANNNLEGEV----PVQLCLLK-QLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAV  547 (779)
Q Consensus       473 L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (779)
                      |++|+|++|++++..    +..+..++ +|++|++++|++++..+..+....                            
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------  191 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------  191 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------
Confidence            999999999998644    34445665 999999999999866554442110                            


Q ss_pred             CCCCCCCCcccceEEEEEcCceeeeccccc-ceeeEEeccCCccCCC----CCccccC-cccCcEEEcCCCcCCccCc--
Q 046050          548 SPSGSSTMRKEESVEFRTKNTSYYYQGRIL-KIMFGLDLSCNKLTGE----IPFQIGY-LNMIRALNLSHNNLMGTIP--  619 (779)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p--  619 (779)
                                                 ... +.|++|||++|.+++.    ++..+.. .++|+.|+|++|.+++..+  
T Consensus       192 ---------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          192 ---------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             ---------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             ---------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence                                       002 4799999999999963    4445555 4599999999999997655  


Q ss_pred             --hhhhCCCCCCEEECCCCcCcCCCch-------hhhhcccCcEEEccCCcCcccCC
Q 046050          620 --STFSHLSQIESLDLSYNMLQGKIPT-------QLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       620 --~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                        ..+..+++|+.|+|++|++.+..+.       .+..+++|++||+++|++.+..|
T Consensus       245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence              3456779999999999997655443       45677889999999999987633

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=6.3e-22  Score=199.21  Aligned_cols=211  Identities=19%  Similarity=0.191  Sum_probs=159.1

Q ss_pred             ccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 046050          427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN  506 (779)
Q Consensus       427 L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  506 (779)
                      .++++++++.++.++.. +...++.|++++|.+++..+..+.++++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus        16 ~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            45555555555544432 22347888888888887778888999999999999999998888889999999999999999


Q ss_pred             CcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEecc
Q 046050          507 LSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLS  586 (779)
Q Consensus       507 l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  586 (779)
                      +++..+..+                                                           ..+++|++|+|+
T Consensus        95 l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~  115 (251)
T 3m19_A           95 LASLPLGVF-----------------------------------------------------------DHLTQLDKLYLG  115 (251)
T ss_dssp             CCCCCTTTT-----------------------------------------------------------TTCTTCCEEECC
T ss_pred             ccccChhHh-----------------------------------------------------------cccCCCCEEEcC
Confidence            984333332                                                           115678999999


Q ss_pred             CCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccC
Q 046050          587 CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKV  666 (779)
Q Consensus       587 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  666 (779)
                      +|++++..+..+..+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|+++|.+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            99999777777899999999999999999877778999999999999999999888889999999999999999999874


Q ss_pred             CCCCCcCCCC------CCCcccCCCCCCCCCCCCCCCCC
Q 046050          667 PDRVGQFATF------TENSYDGNSLLCGQPLSESCYPN  699 (779)
Q Consensus       667 p~~~~~~~~l------~~~~~~~N~~lc~~~l~~~c~~~  699 (779)
                      .+ +..+..+      ......|+. .|+.+....|..+
T Consensus       196 ~~-~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          196 CE-ILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             TT-HHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             cc-cHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            43 2222211      111233443 5666666677544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7.3e-23  Score=220.38  Aligned_cols=94  Identities=21%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             ccccccCCCCCCEEEccCCcCccccC----ccccCCCCCCEEEccCCcc---CCCcchhh-------hCCCCCceEEccC
Q 046050          322 IFSRSFNLTNLVTLQLDANQFTGGIP----ENLLNCSLLGGLYLSDNHI---SGKIPKWL-------GNLSNLVDIIMPN  387 (779)
Q Consensus       322 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~  387 (779)
                      ++..+..+++|++|++++|.++...+    ..+..+++|++|++++|.+   ++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            34455566777777777777765422    3355667777777776533   33334333       4566666666666


Q ss_pred             CCCCC----CcchhhcCCCCCCEEEccCccCc
Q 046050          388 NHLEG----PIPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       388 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      |.+.+    .++..+..+++|++|++++|.++
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            66664    24555555666666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2.2e-21  Score=197.69  Aligned_cols=201  Identities=25%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCC
Q 046050          278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG  357 (779)
Q Consensus       278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  357 (779)
                      +++|+.|++++|.+.. ++    ....+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+.++++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-VQ----GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECTTSCCCC-CT----TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccceeeeeeCCCCccc-cc----ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4566666666665541 11    112233455555555555432  2344455555555555555444444444455555


Q ss_pred             EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcC
Q 046050          358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKI  437 (779)
Q Consensus       358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l  437 (779)
                      +|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+                       +++|++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-----------------------l~~n~l  169 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD-----------------------LSYNQL  169 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE-----------------------CCCCCc
Confidence            555555555444444444445555555555544444444444444444444                       444444


Q ss_pred             cccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchh
Q 046050          438 EGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCL  515 (779)
Q Consensus       438 ~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  515 (779)
                      ++.++..+...  |+.|++++|++++..+..+..+++|+.|++++|++.       +.+++|+.++++.|+++|.+|.++
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcc
Confidence            44444333322  666677777777667777888999999999999887       346678899999999999998877

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=203.81  Aligned_cols=87  Identities=20%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             CCCCCEEEccCCcCccccCccc--cCCCCCCEEEccCCccCCCcc----hhhhCCCCCceEEccCCCCCCCcchhhcCCC
Q 046050          329 LTNLVTLQLDANQFTGGIPENL--LNCSLLGGLYLSDNHISGKIP----KWLGNLSNLVDIIMPNNHLEGPIPANLCKLN  402 (779)
Q Consensus       329 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  402 (779)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3456777777777666666665  666777777777777765433    2334566677777777766666666666666


Q ss_pred             CCCEEEccCccCc
Q 046050          403 FLTVLDLEVNNIS  415 (779)
Q Consensus       403 ~L~~L~L~~n~l~  415 (779)
                      +|++|++++|++.
T Consensus       170 ~L~~L~Ls~N~l~  182 (310)
T 4glp_A          170 ALTSLDLSDNPGL  182 (310)
T ss_dssp             TCCEEECCSCTTC
T ss_pred             CCCEEECCCCCCc
Confidence            6666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=5.4e-21  Score=192.36  Aligned_cols=179  Identities=20%  Similarity=0.209  Sum_probs=160.6

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      .+.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|++++..|..+             
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------   79 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-------------   79 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------------
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-------------
Confidence            678999999998 4565554  689999999999999889999999999999999999986554433             


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                    ..++.|+.|++++|++++..+..|..+++|+.|+
T Consensus        80 ----------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           80 ----------------------------------------------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             ----------------------------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ----------------------------------------------ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence                                                          1157899999999999988888899999999999


Q ss_pred             cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC
Q 046050          609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC  688 (779)
Q Consensus       609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc  688 (779)
                      |++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+..+..++.+.+.+|++.|
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99999998888889999999999999999998888789999999999999999998888788899999999999999999


Q ss_pred             C
Q 046050          689 G  689 (779)
Q Consensus       689 ~  689 (779)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.4e-22  Score=218.17  Aligned_cols=161  Identities=19%  Similarity=0.202  Sum_probs=79.4

Q ss_pred             ccccCCCCCCEEEccCCccCCCcc----hhhhCCCCCceEEccCCCC---CCCcchhh-------cCCCCCCEEEccCcc
Q 046050          348 ENLLNCSLLGGLYLSDNHISGKIP----KWLGNLSNLVDIIMPNNHL---EGPIPANL-------CKLNFLTVLDLEVNN  413 (779)
Q Consensus       348 ~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~~n~  413 (779)
                      ..+..+++|++|++++|.+++..+    ..+..+++|++|++++|.+   .+.+|..+       ..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            334444455555555555443322    2233445555555554322   22223222       344555555555555


Q ss_pred             Ccc----cCCcCcC-CCcccEEEccCCcCcccchhhHh---------------hcceEEEccCcccc-CcCc---hhhhc
Q 046050          414 ISG----SLPSCFS-SWLLTQVHLSRNKIEGQLEDVFG---------------DILVTLDLSYNRFS-GRIP---NWIDK  469 (779)
Q Consensus       414 l~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~---------------~~L~~L~L~~n~l~-~~~~---~~~~~  469 (779)
                      ++.    .++..+. +++|++|++++|.++...+..+.               ..|++|++++|+++ +.++   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            443    1222222 44455555555554433322222               23555555555554 2223   34556


Q ss_pred             CCCCcEEEccCCcCcc-----cCcccccCCCCCCEEEccCCcCc
Q 046050          470 LSHLSYLILANNNLEG-----EVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       470 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      +++|++|++++|+++.     ..+..+..+++|+.|+|++|.++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            7777777777777762     23336667777777777777775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=7.6e-22  Score=208.37  Aligned_cols=253  Identities=16%  Similarity=0.165  Sum_probs=173.6

Q ss_pred             CCCEEEccCCcCccccCccccCC--CCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCC-cchhhcCCCCCCEE
Q 046050          331 NLVTLQLDANQFTGGIPENLLNC--SLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGP-IPANLCKLNFLTVL  407 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  407 (779)
                      .++.++++++.+.   +..+..+  ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4678888888765   3445555  6788888888888766554 44678888888888877654 66677777788888


Q ss_pred             EccCccCcccCCcCcC-CCcccEEEccCC-cCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCC-cCc
Q 046050          408 DLEVNNISGSLPSCFS-SWLLTQVHLSRN-KIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN-NLE  484 (779)
Q Consensus       408 ~L~~n~l~~~~~~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~  484 (779)
                      ++++|.+++..+..+. +++|++|++++| .+++.                     .++..+..+++|++|++++| .++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence            8877777654444333 555555555555 33321                     23455667777888888888 776


Q ss_pred             cc-CcccccCCC-CCCEEEccCCc--Cc-ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc
Q 046050          485 GE-VPVQLCLLK-QLQLIDLSHNN--LS-GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEE  559 (779)
Q Consensus       485 ~~-~~~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (779)
                      +. .+..+..++ +|++|++++|.  ++ +.+|..+                                            
T Consensus       183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--------------------------------------------  218 (336)
T 2ast_B          183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--------------------------------------------  218 (336)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--------------------------------------------
T ss_pred             hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--------------------------------------------
Confidence            54 466677777 88888888873  43 2233322                                            


Q ss_pred             eEEEEEcCceeeecccccceeeEEeccCCc-cCCCCCccccCcccCcEEEcCCCc-CCccCchhhhCCCCCCEEECCCCc
Q 046050          560 SVEFRTKNTSYYYQGRILKIMFGLDLSCNK-LTGEIPFQIGYLNMIRALNLSHNN-LMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       560 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                                     ..+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| 
T Consensus       219 ---------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          219 ---------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             ---------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             ---------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence                           114677888888888 666777788889999999999995 33222236888999999999999 


Q ss_pred             CcCCCchhhhhc-ccCcEEEccCCcCcccCCCCCC
Q 046050          638 LQGKIPTQLVEL-YALAIFSVAHNNLSGKVPDRVG  671 (779)
Q Consensus       638 l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~  671 (779)
                      ++.   ..+..+ .++..|++++|++++..|..++
T Consensus       283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            442   244444 3477888999999999887543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.4e-21  Score=206.29  Aligned_cols=255  Identities=16%  Similarity=0.170  Sum_probs=169.0

Q ss_pred             CCccEEEccccccccccchhhcCC--CCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccc-cChhccCCCCCC
Q 046050           33 TNLEVLILDGSALHIRFLQSIAVL--TSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGT-LPWCLVNMTSLR  109 (779)
Q Consensus        33 ~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~  109 (779)
                      ..++.++++++.+.   +..+..+  +++++|++++|.+.+..+  .+..+++|++|++++|.+++. ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            34788888888765   4555666  788999999998876654  366788999999999988765 777888899999


Q ss_pred             EEeCCCCcCcccCCchhhcCCCCCCEEEcccc-cccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEEC
Q 046050          110 ILDIASNQITGNISSSPLRYLTSLEELRVSNN-QFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISL  188 (779)
Q Consensus       110 ~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L  188 (779)
                      +|++++|.+++..+. .++.+++|++|++++| .+++......+.+++                         +|++|++
T Consensus       122 ~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-------------------------~L~~L~l  175 (336)
T 2ast_B          122 NLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-------------------------RLDELNL  175 (336)
T ss_dssp             EEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-------------------------TCCEEEC
T ss_pred             EEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-------------------------CCCEEcC
Confidence            999999988866665 6888899999999988 565321112233344                         4555555


Q ss_pred             CCC-cCCCC-cchhhhCCC-CCCEEEccCC--CCC-CcCchhhhhcCCCCCEEECcCCc-ccccCCCCCCCCCCccEEEc
Q 046050          189 SGC-RCDFT-FPRFLYYQH-ELRYVDLSHM--NLR-GEFPNWLLENNKELETLLLANNS-LSGFFQMPVNPLKQLTTIDV  261 (779)
Q Consensus       189 ~~n-~~~~~-~~~~l~~~~-~L~~L~Ls~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L  261 (779)
                      ++| .+++. ++..+..++ +|++|++++|  .++ +.++.. +..+++|++|++++|. +++..+..+..+++|++|++
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            555 55543 456666777 7777777777  344 234443 3567777777777777 55555556677777777777


Q ss_pred             cCCC-CCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccccCCccccEEEccCCcCCcccccccc
Q 046050          262 SKNF-IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMTMGCFSLQILALSNNSLQGHIFSRSF  327 (779)
Q Consensus       262 s~n~-l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~  327 (779)
                      ++|. +.......+.. +++|+.|++++| ++..   .+ ....   +++.|++++|.+++..|..++
T Consensus       255 ~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~---~~~~l~~---~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          255 SRCYDIIPETLLELGE-IPTLKTLQVFGI-VPDG---TLQLLKE---ALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TTCTTCCGGGGGGGGG-CTTCCEEECTTS-SCTT---CHHHHHH---HSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCCCCHHHHHHHhc-CCCCCEEeccCc-cCHH---HHHHHHh---hCcceEEecccCccccCCccc
Confidence            7774 22111112333 677888888777 3311   12 1111   356666778888777766554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=201.50  Aligned_cols=227  Identities=17%  Similarity=0.170  Sum_probs=137.5

Q ss_pred             CccEEEccccccccccch---hhcCCCCcCEEECCCCCCcccCCcccc--cCCCCCcEEEccCcccccccC----hhccC
Q 046050           34 NLEVLILDGSALHIRFLQ---SIAVLTSVKHLSMRNCYLYGTSDFQGL--CELVHLQELHIGYNNIGGTLP----WCLVN  104 (779)
Q Consensus        34 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~~~~  104 (779)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+.+..+. .+  ..+++|++|++++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            345555555554321111   112234566666666666555443 33  556666666666666654333    23345


Q ss_pred             CCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCcccc
Q 046050          105 MTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQ  184 (779)
Q Consensus       105 l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~  184 (779)
                      +++|++|++++|+++ .++...++.+++|++|++++|++.+...                      ......+..+++|+
T Consensus       144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~~~~l~~L~  200 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERG----------------------LMAALCPHKFPAIQ  200 (310)
T ss_dssp             CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHH----------------------HHTTSCTTSSCCCC
T ss_pred             ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchh----------------------hhHHHhhhcCCCCC
Confidence            666666666666665 3333355666666666666665542100                      00111223455777


Q ss_pred             EEECCCCcCCCCcch----hhhCCCCCCEEEccCCCCCCcCchhhhhcC---CCCCEEECcCCcccccCCCCCCCCCCcc
Q 046050          185 NISLSGCRCDFTFPR----FLYYQHELRYVDLSHMNLRGEFPNWLLENN---KELETLLLANNSLSGFFQMPVNPLKQLT  257 (779)
Q Consensus       185 ~L~L~~n~~~~~~~~----~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~l~~L~  257 (779)
                      +|++++|+++. ++.    .+..+++|++|++++|.+++..|..+ ..+   ++|++|++++|+++.+ |..+.  ++|+
T Consensus       201 ~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~  275 (310)
T 4glp_A          201 NLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLR  275 (310)
T ss_dssp             SCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCS
T ss_pred             EEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCch-hhhhc--CCCC
Confidence            77788777752 222    35677889999999999886656654 344   6899999999998854 44443  7899


Q ss_pred             EEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCC
Q 046050          258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLN  292 (779)
Q Consensus       258 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~  292 (779)
                      +|++++|+++ .+|.  ...+++|+.|++++|+++
T Consensus       276 ~L~Ls~N~l~-~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          276 VLDLSSNRLN-RAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CEECCSCCCC-SCCC--TTSCCCCSCEECSSTTTS
T ss_pred             EEECCCCcCC-CCch--hhhCCCccEEECcCCCCC
Confidence            9999999998 5554  234789999999999886

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.4e-20  Score=192.37  Aligned_cols=81  Identities=15%  Similarity=0.286  Sum_probs=56.3

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.|+.|++++|++++ ++. +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..|  +..+++|+.|++
T Consensus       151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l  224 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence            455666666666663 332 6677777888888887775443  7777888888888888875443  677788888888


Q ss_pred             cCCcCcc
Q 046050          658 AHNNLSG  664 (779)
Q Consensus       658 s~N~l~~  664 (779)
                      ++|++++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            8888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.9e-20  Score=185.58  Aligned_cols=196  Identities=12%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc-cccccChhccCCCCCCEEeCCC-CcCcccCCchhhcCCCCCCE
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN-IGGTLPWCLVNMTSLRILDIAS-NQITGNISSSPLRYLTSLEE  135 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~i~~~~~~~l~~L~~  135 (779)
                      +|++|++++|.+.+..+ ..+..+++|++|++++|+ +++..+.+|.++++|++|++++ |+++ .++...|..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            45555555555543222 244455555555555554 4444444555555555555554 5555 444334555555555


Q ss_pred             EEcccccccccCCcccccCCCCCc---EEECcCC-ceeeecccCCCCCCcccc-EEECCCCcCCCCcchhhhCCCCCCEE
Q 046050          136 LRVSNNQFQIPISFEPFFNHSKLK---KFYGQKN-RLFVEIESHSLTPKFQLQ-NISLSGCRCDFTFPRFLYYQHELRYV  210 (779)
Q Consensus       136 L~Ls~n~l~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~~~~~L~~L  210 (779)
                      |++++|++++ ++.  +..+++|+   .|++++| .+ ..++...+..+.+|+ +|++++|++. .+|......++|+.|
T Consensus       110 L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L  184 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV  184 (239)
T ss_dssp             EEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred             EeCCCCCCcc-ccc--cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence            5555555543 221  44444444   5555555 33 234444555566666 6677666666 333333233677777


Q ss_pred             EccCCC-CCCcCchhhhhcC-CCCCEEECcCCcccccCCCCCCCCCCccEEEccCC
Q 046050          211 DLSHMN-LRGEFPNWLLENN-KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN  264 (779)
Q Consensus       211 ~Ls~n~-l~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n  264 (779)
                      ++++|+ ++ .+|...+..+ ++|++|++++|+++.+.+.   .+++|+.|+++++
T Consensus       185 ~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          185 YLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             EcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            777774 66 5555555666 7777777777777654332   5667777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2.2e-20  Score=186.48  Aligned_cols=196  Identities=15%  Similarity=0.103  Sum_probs=104.7

Q ss_pred             CCCCEEEccCCcCCcccCcccccccCCccccEEEccCCc-CCccccccccCCCCCCEEEccC-CcCccccCccccCCCCC
Q 046050          279 PRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS-LQGHIFSRSFNLTNLVTLQLDA-NQFTGGIPENLLNCSLL  356 (779)
Q Consensus       279 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L  356 (779)
                      +++++|++++|.+++..+..+   .++++|++|++++|. ++...+..+.++++|++|++++ |++++..+..|.++++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~---~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAF---SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTT---TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHHHc---cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            356666666666553333222   122345555555554 4444334444555555555554 45543333444445555


Q ss_pred             CEEEccCCccCCCcchhhhCCCCCc---eEEccCC-CCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCccc-EEE
Q 046050          357 GGLYLSDNHISGKIPKWLGNLSNLV---DIIMPNN-HLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT-QVH  431 (779)
Q Consensus       357 ~~L~L~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~-~L~  431 (779)
                      ++|++++|++++ +|. +..+++|+   +|++++| .+++..+..|.+++                       +|+ .|+
T Consensus       108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----------------------~L~~~L~  162 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----------------------NETLTLK  162 (239)
T ss_dssp             CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----------------------SSEEEEE
T ss_pred             CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-----------------------cceeEEE
Confidence            555555555443 332 44444444   4444444 44433333344444                       444 555


Q ss_pred             ccCCcCcccchhhHhhc-ceEEEccCcc-ccCcCchhhhcC-CCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050          432 LSRNKIEGQLEDVFGDI-LVTLDLSYNR-FSGRIPNWIDKL-SHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN  505 (779)
Q Consensus       432 l~~n~l~~~~~~~~~~~-L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  505 (779)
                      +++|+++.+++..+... |+.|++++|+ +++..+..+..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       163 l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             cCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            55555544443333322 6667777774 665556677778 8888888888888854443   5677888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2.6e-19  Score=185.68  Aligned_cols=192  Identities=22%  Similarity=0.288  Sum_probs=107.8

Q ss_pred             CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050          203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE  282 (779)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  282 (779)
                      .+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++ .+.. +++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCC
T ss_pred             HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCC
Confidence            3456666666666665 4443  3556666666666666665433  666666666666666665 343 2322 55666


Q ss_pred             EEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEcc
Q 046050          283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS  362 (779)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  362 (779)
                      +|++++|.+++. +.    ...+++|++|++++|.+++..+  +..+++|+.|++++|++++. +. +..+++|++|+++
T Consensus       111 ~L~l~~n~l~~~-~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          111 TLDLTSTQITDV-TP----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD  181 (308)
T ss_dssp             EEECTTSCCCCC-GG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred             EEECCCCCCCCc-hh----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence            666666665532 11    2233355555555555554322  55566666666666666532 22 5566666666666


Q ss_pred             CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050          363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      +|++++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|+++
T Consensus       182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          182 DNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            666654332  555666666666666665433  2555666666666666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.7e-19  Score=190.91  Aligned_cols=196  Identities=18%  Similarity=0.099  Sum_probs=107.7

Q ss_pred             cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCce-EEcc
Q 046050          309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIP-KWLGNLSNLVD-IIMP  386 (779)
Q Consensus       309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L~  386 (779)
                      +.++.++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            44555666665 334433  2466777777777764444566777777777777777655443 45666666554 4445


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccC-CcCcccchhhHhhc---ceEEEccCccccC
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSR-NKIEGQLEDVFGDI---LVTLDLSYNRFSG  461 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~~~~~---L~~L~L~~n~l~~  461 (779)
                      .|+++...|..|..+++|++|++++|+++...+..+. ...+..+++.+ +.+....+..|...   ++.|++++|+|+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            5667655666677777777777777777655444333 44455555543 34544444333322   4455555555553


Q ss_pred             cCchhhhcCCCCcEEEccC-CcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          462 RIPNWIDKLSHLSYLILAN-NNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       462 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      ..+..+ ...+|+++++.+ |.++...++.|..+++|++||+++|+++
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            222222 334455555543 3444333344555555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.5e-19  Score=174.59  Aligned_cols=178  Identities=21%  Similarity=0.191  Sum_probs=140.3

Q ss_pred             EEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCc
Q 046050          429 QVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       429 ~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      .++.+++.++..+... ...+++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            4444455444443222 223777888888887666777888999999999999999777777889999999999999998


Q ss_pred             ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050          509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN  588 (779)
Q Consensus       509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  588 (779)
                      +..+..+                                                           ..+++|++|++++|
T Consensus        90 ~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           90 SLPNGVF-----------------------------------------------------------DKLTQLKELALNTN  110 (208)
T ss_dssp             CCCTTTT-----------------------------------------------------------TTCTTCCEEECCSS
T ss_pred             ccCHhHh-----------------------------------------------------------cCccCCCEEEcCCC
Confidence            4333222                                                           11567899999999


Q ss_pred             ccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       589 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ++++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.       ++.|++|+++.|+++|.+|.
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBC
T ss_pred             cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeec
Confidence            99977777789999999999999999987777799999999999999998854       35789999999999999998


Q ss_pred             CCCcC
Q 046050          669 RVGQF  673 (779)
Q Consensus       669 ~~~~~  673 (779)
                      .++.+
T Consensus       184 ~~~~l  188 (208)
T 2o6s_A          184 SAGSV  188 (208)
T ss_dssp             TTSSB
T ss_pred             cCccc
Confidence            65543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.5e-19  Score=201.02  Aligned_cols=189  Identities=25%  Similarity=0.334  Sum_probs=113.3

Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccC
Q 046050          355 LLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSR  434 (779)
Q Consensus       355 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  434 (779)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|++++ +|. +.. +        
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~--------  121 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-S--------  121 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-T--------
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-C--------
Confidence            67777777777764 44433  256667777776666 444   335666666666666665 333 211 3        


Q ss_pred             CcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCch
Q 046050          435 NKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC  514 (779)
Q Consensus       435 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  514 (779)
                                    |+.|++++|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +|. 
T Consensus       122 --------------L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-  177 (571)
T 3cvr_A          122 --------------LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-  177 (571)
T ss_dssp             --------------CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred             --------------CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence                          4455555555544 333   45666666666666664 333   35566666666666653 443 


Q ss_pred             hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCC
Q 046050          515 LYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI  594 (779)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  594 (779)
                      +                                                             .++|+.|+|++|+|+ .+
T Consensus       178 l-------------------------------------------------------------~~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          178 L-------------------------------------------------------------PESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             C-------------------------------------------------------------CTTCCEEECCSSCCS-SC
T ss_pred             h-------------------------------------------------------------hCCCCEEECcCCCCC-ch
Confidence            2                                                             124566666666666 45


Q ss_pred             CccccCcccC-------cEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhccc
Q 046050          595 PFQIGYLNMI-------RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYA  651 (779)
Q Consensus       595 p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  651 (779)
                      |. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            54 443  55       77888888777 56776777888888888888888777777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.5e-19  Score=201.05  Aligned_cols=187  Identities=24%  Similarity=0.295  Sum_probs=140.4

Q ss_pred             CCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCc
Q 046050          403 FLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN  482 (779)
Q Consensus       403 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  482 (779)
                      +++.|++++|.++++++..  .++|+.|++++|.++.++  .+...|+.|++++|++++ +|. +.+  +|++|++++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence            4555555555555422222  244555555555555433  222337788888888886 555 544  99999999999


Q ss_pred             CcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEE
Q 046050          483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVE  562 (779)
Q Consensus       483 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (779)
                      +++ +|.   .+++|+.|++++|++++ +|. .                                               
T Consensus       132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~-----------------------------------------------  158 (571)
T 3cvr_A          132 LTM-LPE---LPALLEYINADNNQLTM-LPE-L-----------------------------------------------  158 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CCC-C-----------------------------------------------
T ss_pred             CCC-CCC---cCccccEEeCCCCccCc-CCC-c-----------------------------------------------
Confidence            997 555   68999999999999984 554 1                                               


Q ss_pred             EEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCC-------CEEECCC
Q 046050          563 FRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQI-------ESLDLSY  635 (779)
Q Consensus       563 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~  635 (779)
                                    +++|+.|+|++|++++ +|. +.  ++|+.|+|++|+|+ .+|. |..  +|       +.|+|++
T Consensus       159 --------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          159 --------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             --------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             --------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence                          4678999999999996 776 66  99999999999999 6676 654  77       9999999


Q ss_pred             CcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC
Q 046050          636 NMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF  673 (779)
Q Consensus       636 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  673 (779)
                      |+|+ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus       217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            9999 688888889999999999999999988765544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=9.3e-19  Score=185.24  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCE-EEc
Q 046050           60 KHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEE-LRV  138 (779)
Q Consensus        60 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~-L~L  138 (779)
                      ++++.++++++ .+|. .+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|.++|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666664 3442 33  3567777777777775555567777777777777777655666656677766654 444


Q ss_pred             cccccc
Q 046050          139 SNNQFQ  144 (779)
Q Consensus       139 s~n~l~  144 (779)
                      +.|+++
T Consensus        88 ~~N~l~   93 (350)
T 4ay9_X           88 KANNLL   93 (350)
T ss_dssp             EETTCC
T ss_pred             cCCccc
Confidence            556655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=173.68  Aligned_cols=157  Identities=21%  Similarity=0.184  Sum_probs=121.5

Q ss_pred             eEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc-ccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP-VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      +.+++++|.++. +|..+  ...+++|+|++|++++..+ ..|..+++|++|++++|++++..+..+       +     
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------~-----   78 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-------E-----   78 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-------T-----
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-------C-----
Confidence            456666666663 44433  2345777888887776643 456777888888888888774433333       1     


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                     .++.|++|+|++|++++..+..|..+++|+.|+
T Consensus        79 -----------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           79 -----------------------------------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             -----------------------------------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             -----------------------------------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence                                                           145677888888888877777788899999999


Q ss_pred             cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      |++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|+++|.++-
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999999988899999999999999999999988899999999999999999999988874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=5.9e-19  Score=173.13  Aligned_cols=156  Identities=23%  Similarity=0.225  Sum_probs=121.8

Q ss_pred             eEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCC
Q 046050          450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAA  529 (779)
Q Consensus       450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~  529 (779)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+       .      
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-------~------   77 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-------Q------   77 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-------T------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-------h------
Confidence            35566666666 3444332  577888888888877777777788888888888888875555544       1      


Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEc
Q 046050          530 PTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNL  609 (779)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L  609 (779)
                                                                    .++.|++|+|++|++++..+..|..+++|+.|+|
T Consensus        78 ----------------------------------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           78 ----------------------------------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             ----------------------------------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ----------------------------------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence                                                          1456778888888888555666788999999999


Q ss_pred             CCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCC
Q 046050          610 SHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       610 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  667 (779)
                      ++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999998888999999999999999999998888889999999999999999988765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=4.3e-19  Score=174.11  Aligned_cols=159  Identities=16%  Similarity=0.202  Sum_probs=140.7

Q ss_pred             CcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 046050          473 LSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGS  552 (779)
Q Consensus       473 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (779)
                      -+.+++++|.++. +|..+.  +.+++|++++|++++..|...+.                                   
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~-----------------------------------   54 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFK-----------------------------------   54 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGG-----------------------------------
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhc-----------------------------------
Confidence            3589999999985 565443  46799999999998654543211                                   


Q ss_pred             CCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEE
Q 046050          553 STMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLD  632 (779)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  632 (779)
                                             .++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+
T Consensus        55 -----------------------~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           55 -----------------------KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             -----------------------GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             -----------------------cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence                                   257899999999999988888999999999999999999988899999999999999


Q ss_pred             CCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          633 LSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       633 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      |++|++++..|..|..+++|++|++++|++++..|..+..+..++.+.+.+|++.|+|++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999999999999999999999999999999999899899999999999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5e-19  Score=188.11  Aligned_cols=180  Identities=23%  Similarity=0.202  Sum_probs=139.4

Q ss_pred             cEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhh-cCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 046050          428 TQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWID-KLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNN  506 (779)
Q Consensus       428 ~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  506 (779)
                      +.++++++.++.++. .+...++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            455555555555433 2233367778888888777677776 88999999999999988888888999999999999999


Q ss_pred             CcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEecc
Q 046050          507 LSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLS  586 (779)
Q Consensus       507 l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  586 (779)
                      +++..+..+                                                           ..++.|+.|+|+
T Consensus       100 l~~~~~~~~-----------------------------------------------------------~~l~~L~~L~L~  120 (361)
T 2xot_A          100 LHTLDEFLF-----------------------------------------------------------SDLQALEVLLLY  120 (361)
T ss_dssp             CCEECTTTT-----------------------------------------------------------TTCTTCCEEECC
T ss_pred             CCcCCHHHh-----------------------------------------------------------CCCcCCCEEECC
Confidence            874333322                                                           115678889999


Q ss_pred             CCccCCCCCccccCcccCcEEEcCCCcCCccCchhh---hCCCCCCEEECCCCcCcCCCchhhhhccc--CcEEEccCCc
Q 046050          587 CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF---SHLSQIESLDLSYNMLQGKIPTQLVELYA--LAIFSVAHNN  661 (779)
Q Consensus       587 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~  661 (779)
                      +|++++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|||++|++++..+..+..++.  ++.|++++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            999998788899999999999999999996555555   67899999999999999777778888887  4889999999


Q ss_pred             CcccCC
Q 046050          662 LSGKVP  667 (779)
Q Consensus       662 l~~~~p  667 (779)
                      +.|.|.
T Consensus       201 ~~C~C~  206 (361)
T 2xot_A          201 LECDCK  206 (361)
T ss_dssp             EECCHH
T ss_pred             ccCCcC
Confidence            988764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=8.1e-19  Score=172.15  Aligned_cols=157  Identities=20%  Similarity=0.245  Sum_probs=138.5

Q ss_pred             cEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 046050          474 SYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSS  553 (779)
Q Consensus       474 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (779)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..+                                      
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~--------------------------------------   52 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF--------------------------------------   52 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--------------------------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--------------------------------------
Confidence            67999999998 4555443  689999999999985433333                                      


Q ss_pred             CCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEEC
Q 046050          554 TMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDL  633 (779)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  633 (779)
                                           ..++.|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|
T Consensus        53 ---------------------~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           53 ---------------------SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             ---------------------TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ---------------------hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence                                 11568999999999999888999999999999999999999777778899999999999


Q ss_pred             CCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          634 SYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       634 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      ++|++++..|..|..+++|++|++++|++++..+..+..+..++.+.+.+||+.|+|.+
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999999999999999999999999999988888788899999999999999999865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=189.89  Aligned_cols=182  Identities=23%  Similarity=0.205  Sum_probs=151.7

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEccCCcCcccCCchhhhhccCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC-LLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDS  527 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~  527 (779)
                      -+.++++++.++. +|..+.  +.++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..+       .    
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------~----   85 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-------V----   85 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-------T----
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-------c----
Confidence            4689999999984 565443  4689999999999988888887 99999999999999985444434       1    


Q ss_pred             CCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEE
Q 046050          528 AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRAL  607 (779)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  607 (779)
                                                                      .++.|+.|||++|+|++..+..|..+++|+.|
T Consensus        86 ------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           86 ------------------------------------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             ------------------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ------------------------------------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence                                                            15789999999999998778889999999999


Q ss_pred             EcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh---hhcccCcEEEccCCcCcccCCCCCCcCCC--CCCCccc
Q 046050          608 NLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL---VELYALAIFSVAHNNLSGKVPDRVGQFAT--FTENSYD  682 (779)
Q Consensus       608 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~~~~p~~~~~~~~--l~~~~~~  682 (779)
                      +|++|+|++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|++++|++++..+..+..+..  +..+.+.
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            999999998889999999999999999999996555555   67999999999999999655444455554  3678899


Q ss_pred             CCCCCCCCCC
Q 046050          683 GNSLLCGQPL  692 (779)
Q Consensus       683 ~N~~lc~~~l  692 (779)
                      +||+.|+|.+
T Consensus       198 ~N~~~C~C~l  207 (361)
T 2xot_A          198 NNPLECDCKL  207 (361)
T ss_dssp             SSCEECCHHH
T ss_pred             CCCccCCcCc
Confidence            9999999853

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=3.3e-18  Score=169.01  Aligned_cols=186  Identities=22%  Similarity=0.275  Sum_probs=140.3

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      .+.++.+++.++ .+|..+  .++|++|+|++|++++..|..|..+++|++|+|++|+++ .+|...+.           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~-----------   85 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFD-----------   85 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcc-----------
Confidence            456677777766 444433  278888888888888888888888888899999888886 44433211           


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                     .++.|+.|+|++|++++..+..|..+++|+.|+
T Consensus        86 -----------------------------------------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           86 -----------------------------------------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             -----------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             -----------------------------------------------cCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence                                                           146788899999999877777789999999999


Q ss_pred             cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCC------CCccc
Q 046050          609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFT------ENSYD  682 (779)
Q Consensus       609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~------~~~~~  682 (779)
                      |++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++. +..+..+.      ...++
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~-~~~l~~~~~~~~~~~~~~~  196 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD-IMYLRNWVADHTSIAMRWD  196 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG-GHHHHHHHHHCGGGEEEES
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch-hHHHHHHHHhCcccccccc
Confidence            9999999 7888899999999999999999987778899999999999999999988873 12222211      12345


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 046050          683 GNSLLCGQPLSESCYPNG  700 (779)
Q Consensus       683 ~N~~lc~~~l~~~c~~~~  700 (779)
                      |++  +..+-...|..++
T Consensus       197 g~~--v~~~~~~~C~~~~  212 (229)
T 3e6j_A          197 GKA--VNDPDSAKCAGTN  212 (229)
T ss_dssp             SSE--EECTTCSBBTTTC
T ss_pred             Ccc--cCCCCcCccCCCC
Confidence            554  3445556775543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=5.3e-18  Score=165.16  Aligned_cols=160  Identities=22%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             ccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccC
Q 046050          308 LQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN  387 (779)
Q Consensus       308 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  387 (779)
                      |++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            44444444444433333344555555555555555544344455555566666665555544444455556666666666


Q ss_pred             CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050          388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW  466 (779)
Q Consensus       388 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  466 (779)
                      |++++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+.+..+     .++.|+++.|+++|.+|..
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-----TTHHHHHHHHHCTTTBBCT
T ss_pred             CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-----CHHHHHHHHHhCCceeecc
Confidence            665554444555566666666666666554444443 4555555555555443322     1556666666666666666


Q ss_pred             hhcCCC
Q 046050          467 IDKLSH  472 (779)
Q Consensus       467 ~~~l~~  472 (779)
                      ++.++.
T Consensus       185 ~~~l~~  190 (208)
T 2o6s_A          185 AGSVAP  190 (208)
T ss_dssp             TSSBCT
T ss_pred             CccccC
Confidence            655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=8.6e-18  Score=166.00  Aligned_cols=157  Identities=19%  Similarity=0.227  Sum_probs=137.6

Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050          472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG  551 (779)
Q Consensus       472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (779)
                      +.+.++.++++++ .+|..+.  ++|++|++++|++++..|..+       +                            
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~-------~----------------------------   61 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF-------D----------------------------   61 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-------T----------------------------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh-------h----------------------------
Confidence            3578999999998 4555443  899999999999997666554       1                            


Q ss_pred             CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEE
Q 046050          552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESL  631 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  631 (779)
                                              .++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus        62 ------------------------~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           62 ------------------------SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             ------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ------------------------CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence                                    15689999999999997666778999999999999999998888889999999999


Q ss_pred             ECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          632 DLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       632 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +|++|+++ .+|..+..+++|++|++++|++++..+..+..+..++.+.+.+||+.|.|+
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999 789999999999999999999998777778889999999999999999885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.6e-17  Score=168.95  Aligned_cols=186  Identities=22%  Similarity=0.283  Sum_probs=128.7

Q ss_pred             EEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCc
Q 046050          383 IIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGR  462 (779)
Q Consensus       383 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~  462 (779)
                      +.+..+.+.+..+  +..+++|+.|++++|.+... +....+++                      |++|++++|++++.
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~----------------------L~~L~L~~n~l~~~   83 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPN----------------------VTKLFLNGNKLTDI   83 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTT----------------------CCEEECCSSCCCCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCC----------------------CCEEEccCCccCCC
Confidence            3444444443222  23566677777777766633 32222444                      44555555555543


Q ss_pred             CchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcc
Q 046050          463 IPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPA  542 (779)
Q Consensus       463 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  542 (779)
                      .+  +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++ .+                           
T Consensus        84 ~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~-~~-~l---------------------------  130 (291)
T 1h6t_A           84 KP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GL---------------------------  130 (291)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC-CG-GG---------------------------
T ss_pred             cc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCC-Ch-hh---------------------------
Confidence            33  67778888888888888752 2 37788888888888888874 22 12                           


Q ss_pred             cccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhh
Q 046050          543 AGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF  622 (779)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  622 (779)
                                                      ..++.|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +
T Consensus       131 --------------------------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          131 --------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             --------------------------------GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             --------------------------------cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence                                            1146788888888888854  578888999999999999986555  8


Q ss_pred             hCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050          623 SHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       623 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  664 (779)
                      ..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            889999999999999985 44 48889999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=5.7e-20  Score=205.72  Aligned_cols=122  Identities=24%  Similarity=0.230  Sum_probs=88.6

Q ss_pred             CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 046050          472 HLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSG  551 (779)
Q Consensus       472 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (779)
                      .|+.|+|++|++++ +|. +..+++|+.|+|++|+++ .+|..+.                                   
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-----------------------------------  483 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-----------------------------------  483 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-----------------------------------
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-----------------------------------
Confidence            47778888888775 454 777788888888888877 6666541                                   


Q ss_pred             CCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC-chhhhCCCCCCE
Q 046050          552 SSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI-PSTFSHLSQIES  630 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~  630 (779)
                                              .+++|+.|+|++|+|++ +| .++.+++|+.|+|++|++++.. |..|+.+++|+.
T Consensus       484 ------------------------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          484 ------------------------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             ------------------------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ------------------------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence                                    14566777777777774 55 6777888888888888888766 888888888888


Q ss_pred             EECCCCcCcCCCch---hhhhcccCcEEEc
Q 046050          631 LDLSYNMLQGKIPT---QLVELYALAIFSV  657 (779)
Q Consensus       631 L~Ls~N~l~~~~p~---~l~~l~~L~~L~l  657 (779)
                      |+|++|++++.+|.   .+..+++|+.||+
T Consensus       538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888888866543   2344778887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=2.4e-17  Score=157.86  Aligned_cols=90  Identities=24%  Similarity=0.318  Sum_probs=53.3

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34455555555555455555555666666666666666555555666666666666666666655666666666666666


Q ss_pred             cCCcCcccCC
Q 046050          658 AHNNLSGKVP  667 (779)
Q Consensus       658 s~N~l~~~~p  667 (779)
                      ++|+++|.++
T Consensus       134 ~~N~l~c~c~  143 (192)
T 1w8a_A          134 ASNPFNCNCH  143 (192)
T ss_dssp             TTCCBCCSGG
T ss_pred             CCCCccCcCc
Confidence            6666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=9.9e-18  Score=160.60  Aligned_cols=182  Identities=23%  Similarity=0.268  Sum_probs=138.1

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc-cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV-QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDS  527 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~  527 (779)
                      -+.+++++|.++ .+|..+.  .++++|++++|++++..+. .|..+++|++|+|++|++++..|..+       +    
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~----   75 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-------E----   75 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-------T----
T ss_pred             CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-------C----
Confidence            468999999997 5665443  3899999999999977764 58999999999999999997666655       1    


Q ss_pred             CCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEE
Q 046050          528 AAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRAL  607 (779)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  607 (779)
                                                                      .++.|++|+|++|++++..|..|..+++|+.|
T Consensus        76 ------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           76 ------------------------------------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             ------------------------------------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             ------------------------------------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence                                                            15679999999999998888889999999999


Q ss_pred             EcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCC
Q 046050          608 NLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLL  687 (779)
Q Consensus       608 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~l  687 (779)
                      +|++|++++..|..|..+++|+.|+|++|++++..+...- ...++...+.++...|..|..+   ......++..+...
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~l---~~~~l~~l~~~~~~  183 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChHH---cCCChhhCcHhhcC
Confidence            9999999999999999999999999999999987663211 1123334556677777777643   33344456666666


Q ss_pred             CCCCCCCCC
Q 046050          688 CGQPLSESC  696 (779)
Q Consensus       688 c~~~l~~~c  696 (779)
                      |..+.+..|
T Consensus       184 C~~~~~~~c  192 (192)
T 1w8a_A          184 CSSENSEGC  192 (192)
T ss_dssp             CCCC---CC
T ss_pred             cCCCCCCCC
Confidence            765444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=4.8e-17  Score=183.02  Aligned_cols=191  Identities=22%  Similarity=0.282  Sum_probs=117.7

Q ss_pred             CCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCcc
Q 046050          379 NLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNR  458 (779)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~  458 (779)
                      .+..+.+..+.+....+  +..+++|+.|++++|.+... +....+++|+.|+|++|.+++.++                
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~----------------   82 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP----------------   82 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG----------------
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh----------------
Confidence            34455666666664333  45677788888888887643 333335566666665555554332                


Q ss_pred             ccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCC
Q 046050          459 FSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGA  538 (779)
Q Consensus       459 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  538 (779)
                              +..+++|+.|+|++|++.+. | .+..+++|+.|+|++|++.+ ++ .+                       
T Consensus        83 --------l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~-~l-----------------------  127 (605)
T 1m9s_A           83 --------LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GL-----------------------  127 (605)
T ss_dssp             --------GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-CG-GG-----------------------
T ss_pred             --------hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCC-Cc-cc-----------------------
Confidence                    55566666666666666532 2 45666666666666666653 21 11                       


Q ss_pred             CCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC
Q 046050          539 SSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI  618 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  618 (779)
                                                          ..++.|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..
T Consensus       128 ------------------------------------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A          128 ------------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             ------------------------------------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             ------------------------------------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence                                                0135566666666666643  45666777777777777777555


Q ss_pred             chhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCccc
Q 046050          619 PSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGK  665 (779)
Q Consensus       619 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  665 (779)
                      |  +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            5  67777777777777777653 3 466777777777777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.2e-16  Score=162.02  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             CCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccc
Q 046050          229 NKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL  308 (779)
Q Consensus       229 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  308 (779)
                      +++|++|++++|.+...  ..+..+++|++|++++|.++ .++. +. .+++|++|++++|.+++ ++.    ...+++|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~----l~~l~~L  114 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LSS----LKDLKKL  114 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GGG----GTTCTTC
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Chh----hccCCCC
Confidence            34455555555544433  12444555555555555554 3333 22 24555555555555442 111    2223355


Q ss_pred             cEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCC
Q 046050          309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNN  388 (779)
Q Consensus       309 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  388 (779)
                      +.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|++++..+  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            5555555555532  3455667777777777777643  456677777777777777775443  667777777777777


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCccCcc
Q 046050          389 HLEGPIPANLCKLNFLTVLDLEVNNISG  416 (779)
Q Consensus       389 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~  416 (779)
                      .+++ ++ .+..+++|+.|++++|+++.
T Consensus       189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            7764 33 36677777777777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=6.1e-17  Score=163.41  Aligned_cols=171  Identities=16%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEcc
Q 046050          424 SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS  503 (779)
Q Consensus       424 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  503 (779)
                      +..+..+++++|.+++.....-...|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            34566677777777766633223338888999888884 44 68889999999999999986555  8999999999999


Q ss_pred             CCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEE
Q 046050          504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGL  583 (779)
Q Consensus       504 ~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  583 (779)
                      +|++++ +|...                                                             .+.|+.|
T Consensus        94 ~N~l~~-l~~~~-------------------------------------------------------------~~~L~~L  111 (263)
T 1xeu_A           94 RNRLKN-LNGIP-------------------------------------------------------------SACLSRL  111 (263)
T ss_dssp             SSCCSC-CTTCC-------------------------------------------------------------CSSCCEE
T ss_pred             CCccCC-cCccc-------------------------------------------------------------cCcccEE
Confidence            999974 33211                                                             1468899


Q ss_pred             eccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCc
Q 046050          584 DLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLS  663 (779)
Q Consensus       584 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  663 (779)
                      ++++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++.  ..+..+++|++|++++|+++
T Consensus       112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            999999995 43 589999999999999999964 4 689999999999999999976  67889999999999999998


Q ss_pred             ccC
Q 046050          664 GKV  666 (779)
Q Consensus       664 ~~~  666 (779)
                      +..
T Consensus       186 ~~~  188 (263)
T 1xeu_A          186 NEP  188 (263)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=5.2e-17  Score=155.49  Aligned_cols=114  Identities=23%  Similarity=0.343  Sum_probs=105.8

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.++.|++++|+++ .+|..|..+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            56889999999999 78899999999999999999999888899999999999999999999988889999999999999


Q ss_pred             cCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          658 AHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       658 s~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      ++|++++..+..+..+..++.+.+.+||+.|+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999977776788899999999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=3.6e-17  Score=184.10  Aligned_cols=82  Identities=24%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCC
Q 046050           55 VLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLE  134 (779)
Q Consensus        55 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~  134 (779)
                      .+++|+.|++++|.+.. ++  .+..+++|++|+|++|.+++..+  +..+++|++|+|++|+++ .++  .+..+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred             cCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence            34444445555544432 12  24444555555555555443322  444555555555555554 333  244455555


Q ss_pred             EEEccccccc
Q 046050          135 ELRVSNNQFQ  144 (779)
Q Consensus       135 ~L~Ls~n~l~  144 (779)
                      +|+|++|+++
T Consensus       113 ~L~Ls~N~l~  122 (605)
T 1m9s_A          113 SLSLEHNGIS  122 (605)
T ss_dssp             EEECTTSCCC
T ss_pred             EEEecCCCCC
Confidence            5555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-16  Score=153.70  Aligned_cols=149  Identities=16%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      ++.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+       +     
T Consensus        46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-------~-----  109 (197)
T 4ezg_A           46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-------S-----  109 (197)
T ss_dssp             CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-------T-----
T ss_pred             ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-------c-----
Confidence            677777777776 344 4677777777777777654  23356777777777777777765444433       1     


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                     .+++|+.|++++|++++..|..++.+++|+.|+
T Consensus       110 -----------------------------------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A          110 -----------------------------------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             -----------------------------------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             -----------------------------------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence                                                           145677777777777766677777777777777


Q ss_pred             cCCCc-CCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050          609 LSHNN-LMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       609 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  664 (779)
                      +++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            77777 54 444 57777777777777777774 33 56777777777777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.7e-19  Score=199.16  Aligned_cols=89  Identities=27%  Similarity=0.332  Sum_probs=83.8

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC-chhhhhcccCcEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI-PTQLVELYALAIF  655 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  655 (779)
                      ++.|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            578999999999999 889999999999999999999996 67 8999999999999999999887 9999999999999


Q ss_pred             EccCCcCcccCCC
Q 046050          656 SVAHNNLSGKVPD  668 (779)
Q Consensus       656 ~ls~N~l~~~~p~  668 (779)
                      ++++|++++.+|.
T Consensus       539 ~L~~N~l~~~~~~  551 (567)
T 1dce_A          539 NLQGNSLCQEEGI  551 (567)
T ss_dssp             ECTTSGGGGSSSC
T ss_pred             EecCCcCCCCccH
Confidence            9999999988775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.4e-16  Score=165.12  Aligned_cols=283  Identities=11%  Similarity=0.068  Sum_probs=154.5

Q ss_pred             CCCCcEEeCCCCcc-----ccCC-CCCccEEEccccccc--cccchhhcCCCCcCEEECCCCCCcccCCcccccC-----
Q 046050           14 FPNLETLELRDYHL-----ELLN-FTNLEVLILDGSALH--IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCE-----   80 (779)
Q Consensus        14 ~~~L~~L~Ls~~~~-----~~~~-l~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----   80 (779)
                      +++++.|.++++--     .+.. +++|++|+|++|++.  ......+   +.++.+.+..+.+    +...|..     
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I----~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV----PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE----CTTTTEEEETTE
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc----CHHHhccccccc
Confidence            44566666655321     1222 556666666666655  2111111   1234444444422    2234445     


Q ss_pred             ---CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCC
Q 046050           81 ---LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSK  157 (779)
Q Consensus        81 ---l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  157 (779)
                         +++|++|+|++ +++.+.+.+|.+|++|+.+++++|.++ .++..+|..+.++.++..+.+.....           
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~-----------  163 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRF-----------  163 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHT-----------
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhc-----------
Confidence               66666666666 555555556666666666666666665 55555566555555554443221000           


Q ss_pred             CcEEECcCCceeeecccCCCCCCcccc-EEECCCCcCCCCcchhhh----CCCCCCEEEccCCCCCCcCchhhhhcCCCC
Q 046050          158 LKKFYGQKNRLFVEIESHSLTPKFQLQ-NISLSGCRCDFTFPRFLY----YQHELRYVDLSHMNLRGEFPNWLLENNKEL  232 (779)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  232 (779)
                                 ...+....|..+..|+ .+.+....   .++..+.    ...+++.+.+.++-.. .-...+...+++|
T Consensus       164 -----------~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L  228 (329)
T 3sb4_A          164 -----------KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL  228 (329)
T ss_dssp             -----------STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred             -----------cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence                       0011122222233333 23332211   2222221    2345666666654222 2222233346777


Q ss_pred             CEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC-EEEccCCcCCcccCcccccccCCccccEE
Q 046050          233 ETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE-HFNISRNVLNGSIPCSLHMTMGCFSLQIL  311 (779)
Q Consensus       233 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~L~~L  311 (779)
                      +++++++|+++.+.+.+|..+.+|+.+++++| ++ .|+...|..+++|+ .+++.+ .++...+.   .+.+|.+|+.+
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~L~~l  302 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDNLRYV  302 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTTEEEE
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchh---hhhCCccCCEE
Confidence            88888777777777777777788888888776 65 67777777777787 777776 55433332   34566688888


Q ss_pred             EccCCcCCccccccccCCCCCCEEEc
Q 046050          312 ALSNNSLQGHIFSRSFNLTNLVTLQL  337 (779)
Q Consensus       312 ~ls~n~l~~~~~~~~~~l~~L~~L~l  337 (779)
                      +++.|.++......|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88888888777778888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.8e-16  Score=164.67  Aligned_cols=287  Identities=16%  Similarity=0.127  Sum_probs=181.5

Q ss_pred             CCCccEEEccccccccccchhhcC-CCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccC------
Q 046050           32 FTNLEVLILDGSALHIRFLQSIAV-LTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVN------  104 (779)
Q Consensus        32 l~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------  104 (779)
                      +.+++.|.++++ +.......+.. +++|++|||++|++.....  .-+.++.++.+.+..|.|   .+.+|.+      
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFV---PAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC--cccccccccccccccccc---CHHHhcccccccc
Confidence            445666666653 22222233333 5667777777776641100  011222234444444422   2345555      


Q ss_pred             --CCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCcc
Q 046050          105 --MTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQ  182 (779)
Q Consensus       105 --l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (779)
                        |++|+.|+|.+ .++ .|+..+|.++++|+.+++++|.++ .++..+|.++                         .+
T Consensus        98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~-------------------------~~  149 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADS-------------------------VT  149 (329)
T ss_dssp             EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTT-------------------------TC
T ss_pred             cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCC-------------------------Cc
Confidence              77777777777 666 677667777777777777777665 3443444443                         34


Q ss_pred             ccEEECCCCc----CCCCcchhhhCCCCCC-EEEccCCCCCCcCchhhhhc---CCCCCEEECcCCcccccCCCCCCCCC
Q 046050          183 LQNISLSGCR----CDFTFPRFLYYQHELR-YVDLSHMNLRGEFPNWLLEN---NKELETLLLANNSLSGFFQMPVNPLK  254 (779)
Q Consensus       183 L~~L~L~~n~----~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~L~~n~~~~~~~~~l~~l~  254 (779)
                      +..+......    ........|..+..|+ .+.+...   +.++..++..   ..+++.+.+.++-...........++
T Consensus       150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~  226 (329)
T 3sb4_A          150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP  226 (329)
T ss_dssp             EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred             eEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC
Confidence            4444443321    1112234456667777 5666543   2455555433   34567777766532211110112378


Q ss_pred             CccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCcccc-EEEccCCcCCccccccccCCCCCC
Q 046050          255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ-ILALSNNSLQGHIFSRSFNLTNLV  333 (779)
Q Consensus       255 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~  333 (779)
                      +|+.+++++|.++ .+|...|..+++|+.+++.+| ++...+   ..+.+|.+|+ .+++.+ .++...+..|.++++|+
T Consensus       227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~---~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQ---RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehH---HHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            9999999999999 999999998999999999998 653333   3346777999 999998 78877788999999999


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEc
Q 046050          334 TLQLDANQFTGGIPENLLNCSLLGGLYL  361 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L  361 (779)
                      .++++.|.+....+.+|.++++|+.++.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999777889999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=7.9e-16  Score=148.15  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=41.6

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCc-cCCCcchhhhCCCCCceEEc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNH-ISGKIPKWLGNLSNLVDIIM  385 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L  385 (779)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI  166 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence            33333333333333333333344444444444444443333344444444444444443 32 222 2444444444444


Q ss_pred             cCCCCCCCcchhhcCCCCCCEEEccCccC
Q 046050          386 PNNHLEGPIPANLCKLNFLTVLDLEVNNI  414 (779)
Q Consensus       386 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  414 (779)
                      ++|.+++. + .+..+++|+.|++++|++
T Consensus       167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             CCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            44444421 1 334444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=145.30  Aligned_cols=92  Identities=24%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS  656 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  656 (779)
                      ++.|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            45677778888888777777899999999999999999988888999999999999999999977777899999999999


Q ss_pred             ccCCcCcccCCC
Q 046050          657 VAHNNLSGKVPD  668 (779)
Q Consensus       657 ls~N~l~~~~p~  668 (779)
                      +++|++.|.++-
T Consensus       133 L~~N~~~C~c~l  144 (193)
T 2wfh_A          133 IGANPLYCDCNM  144 (193)
T ss_dssp             CCSSCEECSGGG
T ss_pred             eCCCCeecCCcC
Confidence            999999987763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=6.2e-16  Score=156.03  Aligned_cols=168  Identities=22%  Similarity=0.249  Sum_probs=105.1

Q ss_pred             cccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       307 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      ++..++++++.+++..  .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            5566666777666432  3556667777777777666 333 45666666666666666664433  6666666666666


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchh
Q 046050          387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNW  466 (779)
Q Consensus       387 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  466 (779)
                      +|++++. +. +.. ++|+.|++++|++++. +....+++                      |+.|++++|++++. + .
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~----------------------L~~L~Ls~N~i~~~-~-~  145 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-DSLIHLKN----------------------LEILSIRNNKLKSI-V-M  145 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-GGGTTCTT----------------------CCEEECTTSCCCBC-G-G
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCCC-hhhcCccc----------------------ccEEECCCCcCCCC-h-H
Confidence            6666532 22 122 5555566655555532 22222333                      55666666666543 3 5


Q ss_pred             hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                      +..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77788888888888888865  5678888888888888888743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=1.6e-16  Score=183.66  Aligned_cols=188  Identities=22%  Similarity=0.233  Sum_probs=90.1

Q ss_pred             CCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCC
Q 046050          402 NFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN  481 (779)
Q Consensus       402 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  481 (779)
                      +.++.|++.+|.+......     .++.++|+.|.+.            .++++.|.+. ..+..+..+++|+.|+|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-----~l~~l~Ls~~~i~------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n  234 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-----LLQHKKLSQYSID------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNL  234 (727)
T ss_dssp             -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred             CccceEEeeCCCCCcchhh-----HhhcCccCccccc------------Ccccccccee-cChhhhccCCCCcEEECCCC
Confidence            5577788887777653222     2444555555443            2344445444 44566666777777777777


Q ss_pred             cCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceE
Q 046050          482 NLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESV  561 (779)
Q Consensus       482 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (779)
                      ++. .+|..+..+++|++|+|++|.++ .+|..+                                              
T Consensus       235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~----------------------------------------------  266 (727)
T 4b8c_D          235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI----------------------------------------------  266 (727)
T ss_dssp             CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG----------------------------------------------
T ss_pred             CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh----------------------------------------------
Confidence            766 44545556777777777777776 566554                                              


Q ss_pred             EEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCC
Q 046050          562 EFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK  641 (779)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  641 (779)
                                   ..+++|+.|||++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..|+++++|+.|+|++|++++.
T Consensus       267 -------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          267 -------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             -------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             -------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence                         11456677777777777 66777777777777777777776 5566677777777777777777776


Q ss_pred             Cchhhhhccc-CcEEEccCCcCcccCCCCC
Q 046050          642 IPTQLVELYA-LAIFSVAHNNLSGKVPDRV  670 (779)
Q Consensus       642 ~p~~l~~l~~-L~~L~ls~N~l~~~~p~~~  670 (779)
                      +|..+..+.. +..+++++|.++|.+|..+
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             ChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            6666654422 2235666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=3.2e-16  Score=181.07  Aligned_cols=220  Identities=20%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050          254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV  333 (779)
Q Consensus       254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  333 (779)
                      ++++.|++.+|.+. .++.      ..++.++|+.|.+                 ..++++.|.+. ..+..+..++.|+
T Consensus       173 ~~~~~l~L~~n~~~-~~~~------~~l~~l~Ls~~~i-----------------~~~~~~~n~~~-~~~~~~~~l~~L~  227 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQ------ALLQHKKLSQYSI-----------------DEDDDIENRMV-MPKDSKYDDQLWH  227 (727)
T ss_dssp             --------------------------------------------------------------------------CCCCCC
T ss_pred             CccceEEeeCCCCC-cchh------hHhhcCccCcccc-----------------cCcccccccee-cChhhhccCCCCc
Confidence            44566666666665 3332      2344445555533                 33344445544 4566677788888


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050          334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN  413 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  413 (779)
                      .|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.
T Consensus       228 ~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          228 ALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             EEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred             EEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC
Confidence            8888888887 66666677888888888888888 67777888888888888888888 668888888888888888888


Q ss_pred             CcccCCcCcC-CCcccEEEccCCcCcccchhhHhhc---ceEEEccCccccCcCchhhhcCCCCcEEEccCC--------
Q 046050          414 ISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDI---LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANN--------  481 (779)
Q Consensus       414 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--------  481 (779)
                      ++.+ |..+. +++|+.|+|++|.+++.++..+...   ...+++++|.+++.+|.      .|+.|++++|        
T Consensus       305 l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~  377 (727)
T 4b8c_D          305 VTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYD  377 (727)
T ss_dssp             CCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------
T ss_pred             CCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccC
Confidence            8744 44444 7788888888888888877776543   34578888988887765      4556667666        


Q ss_pred             cCcccCcccccCCCCCCEEEccCCcCc
Q 046050          482 NLEGEVPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       482 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      .+.+..+..+..+..+....+++|-+.
T Consensus       378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          378 SLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------------------CCC
T ss_pred             Cccccccchhhcccccceeeeeccccc
Confidence            344444445566667777778888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.5e-15  Score=142.07  Aligned_cols=137  Identities=23%  Similarity=0.222  Sum_probs=105.9

Q ss_pred             CCCCcEEEccCCcCc-ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccC
Q 046050          470 LSHLSYLILANNNLE-GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVS  548 (779)
Q Consensus       470 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (779)
                      .++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+                                 
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~---------------------------------   67 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL---------------------------------   67 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC---------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh---------------------------------
Confidence            367888888888877 56677777788888888888887642  211                                 


Q ss_pred             CCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccC-chhhhCCCC
Q 046050          549 PSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTI-PSTFSHLSQ  627 (779)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~  627 (779)
                                                ..++.|+.|++++|++++.+|..+..+++|+.|++++|.+++.. +..+..+++
T Consensus        68 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           68 --------------------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             --------------------------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             --------------------------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence                                      11467788888888888767777777899999999999998543 278889999


Q ss_pred             CCEEECCCCcCcCCCc---hhhhhcccCcEEEccCCcCcccCCC
Q 046050          628 IESLDLSYNMLQGKIP---TQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       628 L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      |+.|++++|++++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999999999986665   57888999999999999887 4444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=2.9e-15  Score=141.51  Aligned_cols=115  Identities=21%  Similarity=0.202  Sum_probs=102.4

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS  656 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  656 (779)
                      .+.++.|++++|++++..+..++.+++|+.|++++|++++..+..|.++++|+.|++++|++++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            35688999999999977777889999999999999999977778889999999999999999988888889999999999


Q ss_pred             ccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          657 VAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       657 ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      +++|++++..+..+..+..++.+.+.+|++.|.++
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999997666666778899999999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=6.5e-14  Score=149.64  Aligned_cols=270  Identities=13%  Similarity=0.091  Sum_probs=144.4

Q ss_pred             CCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcE
Q 046050           81 LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKK  160 (779)
Q Consensus        81 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  160 (779)
                      +..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ .|+..+|.+. +|+.+.+.. .++ .+...+|.+|++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            46677777754 3555666677775 6888887766 65 6777677763 677777765 333 222233333333333


Q ss_pred             EECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050          161 FYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN  240 (779)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n  240 (779)
                                               +++..|.+.......|. +.+|+.+.+..+ ++ .++...|.++++|+.+.+..+
T Consensus       185 -------------------------l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          185 -------------------------ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             -------------------------EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred             -------------------------eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence                                     33333333222222222 345555555432 33 444444555555555555543


Q ss_pred             cccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCc
Q 046050          241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQG  320 (779)
Q Consensus       241 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  320 (779)
                       ++.+...+|.. .+|+.+++. +.++ .++...|..+++|+.+.+.+|.+...                      ....
T Consensus       237 -l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~----------------------~~~~  290 (401)
T 4fdw_A          237 -VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDD----------------------PEAM  290 (401)
T ss_dssp             -CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCC----------------------TTCE
T ss_pred             -ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCC----------------------cccE
Confidence             44444445544 455555553 3344 45555555455555555555443210                      0011


Q ss_pred             cccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcC
Q 046050          321 HIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCK  400 (779)
Q Consensus       321 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  400 (779)
                      .....|.++++|+.+++.+ .+......+|.+|++|+.+.+..+ ++...+.+|.++ +|+.+++.+|......+..|.+
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            2334455566666666663 344444556666666666666444 444455666666 6777777776666555566666


Q ss_pred             CC-CCCEEEccCccC
Q 046050          401 LN-FLTVLDLEVNNI  414 (779)
Q Consensus       401 l~-~L~~L~L~~n~l  414 (779)
                      ++ .++.|.+..+.+
T Consensus       368 ~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          368 FPDDITVIRVPAESV  382 (401)
T ss_dssp             SCTTCCEEEECGGGH
T ss_pred             CCCCccEEEeCHHHH
Confidence            63 566777666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.7e-15  Score=137.29  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=96.2

Q ss_pred             CCCcEEEccCCcCc-ccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 046050          471 SHLSYLILANNNLE-GEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSP  549 (779)
Q Consensus       471 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (779)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+                                  
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~----------------------------------   60 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL----------------------------------   60 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC----------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh----------------------------------
Confidence            56777777777776 56666777777788888877777642  111                                  


Q ss_pred             CCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCcc-CchhhhCCCCC
Q 046050          550 SGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGT-IPSTFSHLSQI  628 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L  628 (779)
                                               ..++.|+.|++++|.+++.+|..+..+++|+.|++++|++++. .|..+..+++|
T Consensus        61 -------------------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           61 -------------------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             -------------------------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             -------------------------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence                                     0145677788888887766777777788889999999988864 34778888999


Q ss_pred             CEEECCCCcCcCCCc---hhhhhcccCcEEEccC
Q 046050          629 ESLDLSYNMLQGKIP---TQLVELYALAIFSVAH  659 (779)
Q Consensus       629 ~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  659 (779)
                      +.|++++|++++..+   ..+..+++|++||+++
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999887666   5788888999888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2.2e-15  Score=141.04  Aligned_cols=109  Identities=25%  Similarity=0.329  Sum_probs=56.7

Q ss_pred             CCCccEEEccccccc-cccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCE
Q 046050           32 FTNLEVLILDGSALH-IRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRI  110 (779)
Q Consensus        32 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  110 (779)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.   ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            345555555555554 34444455555555555555555433   24555555555555555555445555555555555


Q ss_pred             EeCCCCcCcccCCc-hhhcCCCCCCEEEccccccc
Q 046050          111 LDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       111 L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~  144 (779)
                      |++++|+++ .++. ..+..+++|++|++++|.++
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence            555555555 3331 24555555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=8e-15  Score=138.46  Aligned_cols=91  Identities=22%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.|++|++++|++++..+..++.+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            45566666666666555556777888888888888888777777888888888888888888666666788888888888


Q ss_pred             cCCcCcccCCC
Q 046050          658 AHNNLSGKVPD  668 (779)
Q Consensus       658 s~N~l~~~~p~  668 (779)
                      ++|+++|.+|.
T Consensus       132 ~~N~~~~~~~~  142 (177)
T 2o6r_A          132 HTNPWDCSCPR  142 (177)
T ss_dssp             CSSCBCCCHHH
T ss_pred             cCCCeeccCcc
Confidence            88888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=8.4e-14  Score=148.80  Aligned_cols=264  Identities=13%  Similarity=0.126  Sum_probs=189.2

Q ss_pred             hCCCCCCcEEeCCCCcc-----ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCc
Q 046050           11 WTPFPNLETLELRDYHL-----ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQ   85 (779)
Q Consensus        11 ~~~~~~L~~L~Ls~~~~-----~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   85 (779)
                      +.-+..++.+.+...--     +|.+. +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++..+|..|++|+
T Consensus       109 ~~~~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence            44456667776655332     34443 6777777665 555666677764 688888876 443 33334677788888


Q ss_pred             EEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcC
Q 046050           86 ELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK  165 (779)
Q Consensus        86 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~  165 (779)
                      .++++.|+++.....+|. +.+|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++ .+...+|.+ .+|+.+.+..
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~  257 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN  257 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC
Confidence            888888877766666666 578888888744 65 677777888888888888765 33 455566666 6788777744


Q ss_pred             CceeeecccCCCCCCccccEEECCCCcCC-----CCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCC
Q 046050          166 NRLFVEIESHSLTPKFQLQNISLSGCRCD-----FTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANN  240 (779)
Q Consensus       166 ~~l~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n  240 (779)
                      +  ...++..+|..+.+|+.+.+.++.+.     ...+..|..+++|+.+++. +.++ .++...|.++++|+.+.+..+
T Consensus       258 ~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          258 G--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             T--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT
T ss_pred             C--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc
Confidence            3  24567777888888888888777654     3456788899999999998 4576 777777889999999999655


Q ss_pred             cccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCC-CCCEEEccCCcCC
Q 046050          241 SLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLP-RLEHFNISRNVLN  292 (779)
Q Consensus       241 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-~L~~L~l~~n~l~  292 (779)
                       ++.+...+|..+ +|+.+++++|.+. .++...|..++ .++.|.+..+.+.
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHHH
Confidence             777888899999 9999999999887 66666665554 6888888776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=2e-13  Score=146.79  Aligned_cols=238  Identities=13%  Similarity=0.082  Sum_probs=134.6

Q ss_pred             cCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCC
Q 046050          174 SHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPL  253 (779)
Q Consensus       174 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l  253 (779)
                      ..+|..+.+|+.+.+..+. .......|..+.+|+.+++..+ ++ .++...|.++..|+.+.+..+...  ........
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~  229 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSK  229 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhccc
Confidence            3445555555555554332 2223345555666666666544 33 445555566666666665554322  11223334


Q ss_pred             CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCC
Q 046050          254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLV  333 (779)
Q Consensus       254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  333 (779)
                      .+|+.+.+... ++ .+....+..+..++.+.+..+... ...   ..+..+..++.+......+.   ...+..+.+|+
T Consensus       230 ~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~---~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~  300 (394)
T 4fs7_A          230 TGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGG---SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLT  300 (394)
T ss_dssp             CCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECS---CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCC
T ss_pred             CCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eec---cccccccccceeccCceeec---ccccccccccc
Confidence            56666666543 22 344445555666666666554322 111   22234446666666554432   23455677788


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCcc
Q 046050          334 TLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNN  413 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  413 (779)
                      .+.+..+ +......+|.++++|+.+++..+ ++.....+|.++++|+.+.+..+ ++.....+|.++++|+.+++..+ 
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-  376 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-  376 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred             ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence            8877655 44355567778888888888644 55455677888888888888766 55556677888888888888654 


Q ss_pred             CcccCCcCcC-CCcccEE
Q 046050          414 ISGSLPSCFS-SWLLTQV  430 (779)
Q Consensus       414 l~~~~~~~~~-~~~L~~L  430 (779)
                      +... ...|. +.+|+.+
T Consensus       377 ~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGG-GGGBCTTCEEEEE
T ss_pred             CEEh-hheecCCCCCcEE
Confidence            2212 23343 6666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=2.3e-13  Score=146.30  Aligned_cols=221  Identities=16%  Similarity=0.158  Sum_probs=145.6

Q ss_pred             chhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhc
Q 046050          198 PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAF  277 (779)
Q Consensus       198 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~  277 (779)
                      ..+|.++++|+.+.+..+. . .++...|.++++|+.+.+..+ ++.+....|..+..|+.+.+..+..  .+....+. 
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~-  228 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALS-  228 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTT-
T ss_pred             hhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhcc-
Confidence            4567777888888886543 3 566666777888888888765 5566667777888888877766543  23333443 


Q ss_pred             CCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCC
Q 046050          278 LPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLG  357 (779)
Q Consensus       278 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  357 (779)
                      ...|+.+.+.... +....   ..+.+|..++.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+
T Consensus       229 ~~~l~~i~ip~~~-~~i~~---~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~  300 (394)
T 4fs7_A          229 KTGVKNIIIPDSF-TELGK---SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLT  300 (394)
T ss_dssp             TCCCCEEEECTTC-CEECS---STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCC
T ss_pred             cCCCceEEECCCc-eeccc---ccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccc
Confidence            4577777765432 11111   23345567788877766443 4455666777787777766543   234577778888


Q ss_pred             EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCC
Q 046050          358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRN  435 (779)
Q Consensus       358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n  435 (779)
                      .+.+..+ ++.....+|.++++|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|. +.+|+.+++..+
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8888654 44455667888888888888654 55455677888888888888766 6656666776 678888887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=1.8e-14  Score=134.73  Aligned_cols=91  Identities=23%  Similarity=0.200  Sum_probs=81.1

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.++.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            56788999999999888888999999999999999999877788899999999999999999877778999999999999


Q ss_pred             cCCcCcccCCC
Q 046050          658 AHNNLSGKVPD  668 (779)
Q Consensus       658 s~N~l~~~~p~  668 (779)
                      ++|+++|.++.
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            99999988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=2.8e-14  Score=133.32  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=100.5

Q ss_pred             eeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050          580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH  659 (779)
Q Consensus       580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  659 (779)
                      .+.+|+++|+++ .+|..+.  ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467999999999 6777664  8999999999999998899999999999999999999988888889999999999999


Q ss_pred             CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      |++++..|..+..+..++.+.+++||+.|.|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99998877778899999999999999999985

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=6.1e-14  Score=131.47  Aligned_cols=91  Identities=23%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSV  657 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  657 (779)
                      +.++.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            46788999999999888888999999999999999998776777888999999999999998766667888999999999


Q ss_pred             cCCcCcccCCC
Q 046050          658 AHNNLSGKVPD  668 (779)
Q Consensus       658 s~N~l~~~~p~  668 (779)
                      ++|++.+.++.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999877653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=5.4e-14  Score=128.55  Aligned_cols=125  Identities=24%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             cccEEEccCCcCC-ccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEc
Q 046050          307 SLQILALSNNSLQ-GHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIM  385 (779)
Q Consensus       307 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  385 (779)
                      +++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            6777777777776 55666667777788888888877744  56777778888888888887667777777788888888


Q ss_pred             cCCCCCCC-cchhhcCCCCCCEEEccCccCcccCC---cCcC-CCcccEEEcc
Q 046050          386 PNNHLEGP-IPANLCKLNFLTVLDLEVNNISGSLP---SCFS-SWLLTQVHLS  433 (779)
Q Consensus       386 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~-~~~L~~L~l~  433 (779)
                      ++|.+++. .+..+..+++|+.|++++|++++..+   ..+. +++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88887753 33667777888888888887776554   2333 6667776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=8.8e-16  Score=147.95  Aligned_cols=149  Identities=21%  Similarity=0.270  Sum_probs=105.7

Q ss_pred             ceEEEccCccccCcCch------hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050          449 LVTLDLSYNRFSGRIPN------WIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE  522 (779)
Q Consensus       449 L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~  522 (779)
                      ++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+.      
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~------   90 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA------   90 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH------
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh------
Confidence            55566666666655554      77888888888888888875 45 7777888888888888887 5555431      


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc
Q 046050          523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN  602 (779)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  602 (779)
                                                                           .++.|+.|++++|++++ +| .+..++
T Consensus        91 -----------------------------------------------------~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           91 -----------------------------------------------------VADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             -----------------------------------------------------HHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             -----------------------------------------------------cCCcCCEEECcCCcCCc-CC-ccccCC
Confidence                                                                 14677788888888874 44 577778


Q ss_pred             cCcEEEcCCCcCCccCc-hhhhCCCCCCEEECCCCcCcCCCchh----------hhhcccCcEEEccCCcCc
Q 046050          603 MIRALNLSHNNLMGTIP-STFSHLSQIESLDLSYNMLQGKIPTQ----------LVELYALAIFSVAHNNLS  663 (779)
Q Consensus       603 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  663 (779)
                      +|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|++||  +|+++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            88888888888874333 46777888888888888887665542          67777787776  66655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=7.3e-14  Score=130.94  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             eEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          581 FGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       581 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57999999998 7787765  89999999999999988999999999999999999999877777899999999999999


Q ss_pred             cCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          661 NLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       661 ~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      ++++..+..+..+..++.+.+.+|++.|.|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9997777668889999999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=7.3e-14  Score=131.63  Aligned_cols=134  Identities=15%  Similarity=0.106  Sum_probs=98.0

Q ss_pred             hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 046050          467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA  546 (779)
Q Consensus       467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (779)
                      +.++++|+.|++++|+++.. |......++|++|++++|++++.  ..+                               
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l-------------------------------   60 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGF-------------------------------   60 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCC-------------------------------
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccc-------------------------------
Confidence            45667788888888887743 44333334788888888887642  111                               


Q ss_pred             cCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCch--hhhC
Q 046050          547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS--TFSH  624 (779)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~  624 (779)
                                                  ..++.|+.|++++|++++..+..+..+++|+.|++++|+++ .+|.  .+..
T Consensus        61 ----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~  111 (176)
T 1a9n_A           61 ----------------------------PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLAS  111 (176)
T ss_dssp             ----------------------------CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGG
T ss_pred             ----------------------------ccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhc
Confidence                                        11466788888888888554455588899999999999996 4565  7888


Q ss_pred             CCCCCEEECCCCcCcCCCch----hhhhcccCcEEEccCCcCcc
Q 046050          625 LSQIESLDLSYNMLQGKIPT----QLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       625 l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~ls~N~l~~  664 (779)
                      +++|+.|++++|+++ .+|.    .+..+++|++||+++|+...
T Consensus       112 l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999999998 4555    48889999999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=1.3e-13  Score=129.98  Aligned_cols=134  Identities=17%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             cCCCCCccEEEccccccccccchhhcCCC-CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCC
Q 046050           29 LLNFTNLEVLILDGSALHIRFLQSIAVLT-SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTS  107 (779)
Q Consensus        29 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  107 (779)
                      +.++++|++|++++|+++.. +. +..+. +|++|++++|.+.+.   ..+..+++|++|++++|.+++..+..+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            33455566666666655532 22 33333 666666666666543   24666666666666666666544444566666


Q ss_pred             CCEEeCCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCCcc---cccCCCCCcEEECcCCcee
Q 046050          108 LRILDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPISFE---PFFNHSKLKKFYGQKNRLF  169 (779)
Q Consensus       108 L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~l~~L~~L~l~~~~l~  169 (779)
                      |++|++++|+++ .+|. ..+..+++|++|++++|.++ .++..   .+..+++|+.|+++.|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666666665 4543 24556666666666666665 23322   3556666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.8e-15  Score=145.77  Aligned_cols=138  Identities=21%  Similarity=0.214  Sum_probs=119.6

Q ss_pred             hhcCCCCcEEEccCCcCcccCcc------cccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCC
Q 046050          467 IDKLSHLSYLILANNNLEGEVPV------QLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASS  540 (779)
Q Consensus       467 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~  540 (779)
                      +.....++.++++++.+.+..|.      .+..+++|++|++++|++++ +| .+                         
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~-------------------------   66 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL-------------------------   66 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH-------------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc-------------------------
Confidence            55677888889999998887776      89999999999999999985 66 33                         


Q ss_pred             cccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCch
Q 046050          541 PAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS  620 (779)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  620 (779)
                                                        ..++.|+.|++++|+++ .+|..+..+++|+.|++++|++++ +| 
T Consensus        67 ----------------------------------~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-  109 (198)
T 1ds9_A           67 ----------------------------------SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-  109 (198)
T ss_dssp             ----------------------------------HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-
T ss_pred             ----------------------------------ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-
Confidence                                              12578999999999999 788888889999999999999996 55 


Q ss_pred             hhhCCCCCCEEECCCCcCcCCCc-hhhhhcccCcEEEccCCcCcccCCC
Q 046050          621 TFSHLSQIESLDLSYNMLQGKIP-TQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       621 ~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            68999999999999999985433 5789999999999999999998876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=9.4e-11  Score=125.79  Aligned_cols=132  Identities=13%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             CccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CC
Q 046050          347 PENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SW  425 (779)
Q Consensus       347 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~  425 (779)
                      ..+|.++..|+.+.+..+..+ ....+|.++++|+.+.+.. .++.....+|.++.+|+.+++..+ ++.+...+|. +.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            344555556666655544332 3344555556666655542 333334445555666666665432 3334444444 44


Q ss_pred             cccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 046050          426 LLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN  505 (779)
Q Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  505 (779)
                      +|+.+.+..+ ++                      ......|.++++|+.+++.++....   ..+..+.+|+.+.+..+
T Consensus       335 ~L~~i~ip~s-v~----------------------~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          335 QLERIAIPSS-VT----------------------KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCCEEEECTT-CC----------------------BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             CCCEEEECcc-cC----------------------EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            4554444322 22                      2333455666666666666554321   23455566666665555


Q ss_pred             cC
Q 046050          506 NL  507 (779)
Q Consensus       506 ~l  507 (779)
                      .+
T Consensus       389 ~~  390 (394)
T 4gt6_A          389 SI  390 (394)
T ss_dssp             --
T ss_pred             CE
Confidence            43

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=2e-12  Score=136.50  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             EEeccCC-ccCCCCCccccCcccCcEEEcCC-CcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccC
Q 046050          582 GLDLSCN-KLTGEIPFQIGYLNMIRALNLSH-NNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAH  659 (779)
Q Consensus       582 ~LdLs~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  659 (779)
                      .++++++ +++ .+|. +..+++|+.|+|++ |.|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 777 5676 88888888888885 888877777788888888888888888887777888888888888888


Q ss_pred             CcCcccCCCCCCcCCCCCCCcccCCCCCCCCC
Q 046050          660 NNLSGKVPDRVGQFATFTENSYDGNSLLCGQP  691 (779)
Q Consensus       660 N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~  691 (779)
                      |+|++..|..+..+. ++.+.+.+|++.|.|.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            888866555544444 7777788888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=1.1e-10  Score=125.33  Aligned_cols=158  Identities=11%  Similarity=0.051  Sum_probs=85.8

Q ss_pred             ccchhhcCCC-CcCEEECCCCCCcccCCcccccCCCCCcEEEccCcc---cccccChhccCCCCCCEEeCCCCcCcccCC
Q 046050           48 RFLQSIAVLT-SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNN---IGGTLPWCLVNMTSLRILDIASNQITGNIS  123 (779)
Q Consensus        48 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~  123 (779)
                      +...+|.+++ .|+.+.+..+ +. .+...+|.++.+|+.+.++.|.   ++.+...+|..+.+|+.+.+..+ ++ .++
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~  129 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EID  129 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EEC
T ss_pred             cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eeh
Confidence            3345566653 4777777654 32 3333466677777777776553   55555566777777776666544 34 555


Q ss_pred             chhhcCCCCCCEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhC
Q 046050          124 SSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYY  203 (779)
Q Consensus       124 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  203 (779)
                      ..+|..+.+|+.+.+..+.-  .+....|..+..|+.+.+..+-  ..+...+|.. ..|+.+.+..+- .......+..
T Consensus       130 ~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~  203 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDSV--TAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSE  203 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC--CEECTTTTTT-CCCSEEEECTTC-CEECTTTTTT
T ss_pred             hhhhhhhcccccccccceee--eecccceeccccccccccccee--eEeccccccc-cceeEEEECCcc-cccccchhhh
Confidence            55667777777777765422  3444556666666666665442  2333334432 345555554331 1122344445


Q ss_pred             CCCCCEEEccCC
Q 046050          204 QHELRYVDLSHM  215 (779)
Q Consensus       204 ~~~L~~L~Ls~n  215 (779)
                      +.+++.......
T Consensus       204 c~~l~~~~~~~~  215 (394)
T 4gt6_A          204 CFALSTITSDSE  215 (394)
T ss_dssp             CTTCCEEEECCS
T ss_pred             ccccceeccccc
Confidence            555555554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=4e-12  Score=134.15  Aligned_cols=112  Identities=17%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             cceeeEEeccC-CccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEE
Q 046050          577 LKIMFGLDLSC-NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIF  655 (779)
Q Consensus       577 l~~L~~LdLs~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  655 (779)
                      +++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            45799999996 999988889999999999999999999999999999999999999999999977777777666 9999


Q ss_pred             EccCCcCcccCCCCCCcCCCC---CCCcccCCCCCCCCC
Q 046050          656 SVAHNNLSGKVPDRVGQFATF---TENSYDGNSLLCGQP  691 (779)
Q Consensus       656 ~ls~N~l~~~~p~~~~~~~~l---~~~~~~~N~~lc~~~  691 (779)
                      ++++|++.|.++-  .+|..+   ....+..+...|..+
T Consensus       109 ~l~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          109 VLSGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             ECCSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             EeeCCCccCCCcc--HHHHHHHHhCcccccccCCCCCCC
Confidence            9999999987763  233222   222345566677654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.6e-12  Score=137.50  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             cccCcccCcEEEcCCCcCCcc----CchhhhCCCCCCEEECCCCcCcCCCchhhhhc
Q 046050          597 QIGYLNMIRALNLSHNNLMGT----IPSTFSHLSQIESLDLSYNMLQGKIPTQLVEL  649 (779)
Q Consensus       597 ~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  649 (779)
                      .+...++|+.|+|++|.|++.    ++..+...++|++|||++|.|+......+..+
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            344456677777777777643    33444556777777777777765544455443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=7.9e-13  Score=139.86  Aligned_cols=138  Identities=15%  Similarity=0.102  Sum_probs=59.5

Q ss_pred             CCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCccc-ccc-cCCccccEEEccCCcCCcc----cccccc
Q 046050          254 KQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL-HMT-MGCFSLQILALSNNSLQGH----IFSRSF  327 (779)
Q Consensus       254 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~-~~~~~L~~L~ls~n~l~~~----~~~~~~  327 (779)
                      ++|++|++++|.+++.....+...+++|+.|++++|.++......+ ... ..+++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4555555555555422222222223455555555555543222222 111 1223455555555555432    222233


Q ss_pred             CCCCCCEEEccCCcCcccc----CccccCCCCCCEEEccCCccCCC----cchhhhCCCCCceEEccCCCCC
Q 046050          328 NLTNLVTLQLDANQFTGGI----PENLLNCSLLGGLYLSDNHISGK----IPKWLGNLSNLVDIIMPNNHLE  391 (779)
Q Consensus       328 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~  391 (779)
                      ..++|++|++++|.+++..    +..+...++|++|+|++|.+++.    ++..+...++|++|++++|.++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4555555555555554321    22333444555555555555431    1222333444555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=2.7e-08  Score=106.08  Aligned_cols=148  Identities=15%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCcccc
Q 046050          230 KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQ  309 (779)
Q Consensus       230 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~  309 (779)
                      ..+..+.+... ........+..+.+|+.+.+..+ +. .+....+..+..|+.+.+..+ ++....   ..+.+|.+|+
T Consensus       194 ~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~---~aF~~~~~l~  266 (379)
T 4h09_A          194 KTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGS---FLLQNCTALK  266 (379)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECT---TTTTTCTTCC
T ss_pred             ccccccccccc-eeEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCc---cccceeehhc
Confidence            34444444332 22233445566666777766544 33 444555544566666665443 221111   1122333455


Q ss_pred             EEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEcc
Q 046050          310 ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP  386 (779)
Q Consensus       310 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  386 (779)
                      .+.+..+ ++......|.++++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+.
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            5444322 22233334445555555555555544334445555555555555432 332333445555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=3.9e-08  Score=104.79  Aligned_cols=140  Identities=15%  Similarity=0.043  Sum_probs=61.0

Q ss_pred             ccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCccc
Q 046050          350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLT  428 (779)
Q Consensus       350 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~  428 (779)
                      +..+.+++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|. +.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334444444444332 11122334444444444444433 22233344444445555544322 2223333333 44444


Q ss_pred             EEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCC
Q 046050          429 QVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLL  494 (779)
Q Consensus       429 ~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  494 (779)
                      .+.+.++.++.+...+|..+  |+.+++..+ ++.....+|.++++|+.+.+..+ ++.+...+|.++
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            44444444444433334332  444444322 33233455666666766666543 444445555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=3.6e-08  Score=103.09  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             hhCCCCCCEEEccCCCCC---------CcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCc
Q 046050          201 LYYQHELRYVDLSHMNLR---------GEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIP  271 (779)
Q Consensus       201 l~~~~~L~~L~Ls~n~l~---------~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~  271 (779)
                      ...+++|+.|.+......         +.+. .++..+|+|+.|.+++|.-... + .+ .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHH
Confidence            455678888888654321         1233 3346778899999988731121 2 23 37888888888887763322


Q ss_pred             hhhh-hcCCCCCEEEccC
Q 046050          272 TGIG-AFLPRLEHFNISR  288 (779)
Q Consensus       272 ~~~~-~~l~~L~~L~l~~  288 (779)
                      ..+. ..+|+|+.|+|+.
T Consensus       211 ~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHHHSBCTTCCEEEEEC
T ss_pred             HHHHHccCCCCcEEEEec
Confidence            2333 1378888888753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=2.7e-08  Score=103.98  Aligned_cols=81  Identities=22%  Similarity=0.285  Sum_probs=44.3

Q ss_pred             CCcccEEEccCCcCcccchhhHh-----hcceEEEccCccccCc----CchhhhcCCCCcEEEccCCcCcccCcccccC-
Q 046050          424 SWLLTQVHLSRNKIEGQLEDVFG-----DILVTLDLSYNRFSGR----IPNWIDKLSHLSYLILANNNLEGEVPVQLCL-  493 (779)
Q Consensus       424 ~~~L~~L~l~~n~l~~~~~~~~~-----~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-  493 (779)
                      +++|+.|++.+|.+.......+.     +.|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45666666666666543322222     1266666666666542    2223345677777777777776443333332 


Q ss_pred             CCCCCEEEccCCc
Q 046050          494 LKQLQLIDLSHNN  506 (779)
Q Consensus       494 l~~L~~L~Ls~N~  506 (779)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=4e-08  Score=92.57  Aligned_cols=91  Identities=26%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             hcCCCCcCEEECCCCCCcccCC---cccccCCCCCcEEEccCcccccc----cChhccCCCCCCEEeC--CCCcCccc--
Q 046050           53 IAVLTSVKHLSMRNCYLYGTSD---FQGLCELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDI--ASNQITGN--  121 (779)
Q Consensus        53 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L--s~n~i~~~--  121 (779)
                      +...++|++|+|++|.+...-.   .+.+...++|++|+|++|.|+..    +..++...+.|++|+|  ++|.|...  
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            3444555555555555421100   01233345555666666655542    3344555566666666  55666521  


Q ss_pred             --CCchhhcCCCCCCEEEccccccc
Q 046050          122 --ISSSPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       122 --i~~~~~~~l~~L~~L~Ls~n~l~  144 (779)
                        +.. .+...+.|++|++++|.+.
T Consensus       141 ~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          141 MEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HHHhCCCcCEEeccCCCCC
Confidence              112 3344466666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1.3e-07  Score=89.11  Aligned_cols=44  Identities=11%  Similarity=0.003  Sum_probs=27.5

Q ss_pred             hhhhcCCCCcEEEccCC-cCccc----CcccccCCCCCCEEEccCCcCc
Q 046050          465 NWIDKLSHLSYLILANN-NLEGE----VPVQLCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       465 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  508 (779)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|++.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            34555677777777777 66532    2344455667777777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=4.3e-07  Score=89.79  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             CcccCcEEEcCCCcCCc--cCchhhhCCCCCCEEECCCCcCcCCCchhhhhcc--cCcEEEccCCcCcccCC
Q 046050          600 YLNMIRALNLSHNNLMG--TIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELY--ALAIFSVAHNNLSGKVP  667 (779)
Q Consensus       600 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p  667 (779)
                      .+++|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            35566666666666665  2345555666666666666666643  2233333  66666666666665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=2.4e-07  Score=91.57  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=50.2

Q ss_pred             cceeeEEeccCCccCC--CCCccccCcccCcEEEcCCCcCCccCchhhhCCC--CCCEEECCCCcCcCCCc-------hh
Q 046050          577 LKIMFGLDLSCNKLTG--EIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLS--QIESLDLSYNMLQGKIP-------TQ  645 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~~  645 (779)
                      ++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|++.+.+|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5667777777777775  3345556677777777777777754  2233343  77777777777776554       23


Q ss_pred             hhhcccCcEEE
Q 046050          646 LVELYALAIFS  656 (779)
Q Consensus       646 l~~l~~L~~L~  656 (779)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55667776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.7e-06  Score=77.78  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=41.8

Q ss_pred             CcCEEECCCCCCcccCCcccccCCCCCcEEEccCc-ccccccChhccCC----CCCCEEeCCCCc-CcccCCchhhcCCC
Q 046050           58 SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYN-NIGGTLPWCLVNM----TSLRILDIASNQ-ITGNISSSPLRYLT  131 (779)
Q Consensus        58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~i~~~~~~~l~  131 (779)
                      .|++||+++|.++.. ....+..+++|++|+|++| .|+...-..++.+    ++|++|+|++|. |+..-- ..+..++
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            456666666654322 1224455666666666666 3554333344443    356666666653 442111 1344556


Q ss_pred             CCCEEEccccc
Q 046050          132 SLEELRVSNNQ  142 (779)
Q Consensus       132 ~L~~L~Ls~n~  142 (779)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.87  E-value=4.6e-06  Score=76.21  Aligned_cols=84  Identities=10%  Similarity=0.026  Sum_probs=69.2

Q ss_pred             ceeeEEeccCCccCCCCCccccCcccCcEEEcCCCc-CCccCchhhhCC----CCCCEEECCCCc-CcCCCchhhhhccc
Q 046050          578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNN-LMGTIPSTFSHL----SQIESLDLSYNM-LQGKIPTQLVELYA  651 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  651 (779)
                      ..|+.||++++.++..--..+.++++|+.|+|++|. +++.--..++.+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            368999999999987767778899999999999995 776555566665    379999999985 87655567788999


Q ss_pred             CcEEEccCCc
Q 046050          652 LAIFSVAHNN  661 (779)
Q Consensus       652 L~~L~ls~N~  661 (779)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.37  E-value=0.00026  Score=61.63  Aligned_cols=40  Identities=25%  Similarity=0.135  Sum_probs=22.2

Q ss_pred             CCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccC
Q 046050          627 QIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKV  666 (779)
Q Consensus       627 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  666 (779)
                      +|+.|+|++|+|+...+..|..+++|++|+|++|++.+.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            4555555555555444445555555666666666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.23  E-value=0.00028  Score=65.64  Aligned_cols=113  Identities=11%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             CCCCccEEEcccc-cccc----ccchhhcCCCCcCEEECCCCCCcccCC---cccccCCCCCcEEEccCcccccc----c
Q 046050           31 NFTNLEVLILDGS-ALHI----RFLQSIAVLTSVKHLSMRNCYLYGTSD---FQGLCELVHLQELHIGYNNIGGT----L   98 (779)
Q Consensus        31 ~l~~L~~L~L~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~   98 (779)
                      +-+.|+.|+|+++ .+..    .+..++..-+.|++|+|++|.+...-.   .+.+..-+.|++|+|++|.|+..    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4456666666664 4432    234555666777777777777742110   12233446677788887777653    3


Q ss_pred             ChhccCCCCCCEEeCCCCc---Ccc----cCCchhhcCCCCCCEEEccccccc
Q 046050           99 PWCLVNMTSLRILDIASNQ---ITG----NISSSPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus        99 ~~~~~~l~~L~~L~Ls~n~---i~~----~i~~~~~~~l~~L~~L~Ls~n~l~  144 (779)
                      .+++..-+.|++|+|++|.   +..    .+.. .+..-+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence            3455566678888887653   321    1222 3445577888888877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.00084  Score=58.35  Aligned_cols=58  Identities=22%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             eEEeccCCccC-CCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC
Q 046050          581 FGLDLSCNKLT-GEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG  640 (779)
Q Consensus       581 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  640 (779)
                      ..+|.++++++ ..+|..+.  ++|+.|+|++|+|+...++.|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36899999997 46665543  579999999999998888889999999999999999874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.83  E-value=0.00084  Score=62.46  Aligned_cols=38  Identities=11%  Similarity=0.112  Sum_probs=18.5

Q ss_pred             CCCCcEEEccCC---cCcc----cCcccccCCCCCCEEEccCCcC
Q 046050          470 LSHLSYLILANN---NLEG----EVPVQLCLLKQLQLIDLSHNNL  507 (779)
Q Consensus       470 l~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~Ls~N~l  507 (779)
                      -+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus       125 N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          125 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            344566666543   2221    1223344455666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	779
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 5e-17
 Identities = 77/375 (20%), Positives = 130/375 (34%), Gaps = 36/375 (9%)

Query: 72  TSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLT 131
            +D     +L  +  L      I       +  + +L  ++ ++NQ+T     +PL+ LT
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLT 88

Query: 132 SLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGC 191
            L ++ ++NNQ           N + L  F  Q   +       +L       N      
Sbjct: 89  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148

Query: 192 RCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENN----------KELETLLLANNS 241
                                   NL       +  N             LE+L+  NN 
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 242 LSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHM 301
           +S     P+  L  L  + ++ N ++     G  A L  L   +++ N ++   P S   
Sbjct: 209 ISDIT--PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLS--- 260

Query: 302 TMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYL 361
             G   L  L L  N +          LT L  L+L+ NQ     P + L    L  L L
Sbjct: 261 --GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTL 314

Query: 362 SDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP-S 420
             N+IS   P  + +L+ L  +   NN +     ++L  L  +  L    N IS   P +
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 421 CFSSWLLTQVHLSRN 435
             +   +TQ+ L+  
Sbjct: 371 NLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 4e-16
 Identities = 61/402 (15%), Positives = 128/402 (31%), Gaps = 38/402 (9%)

Query: 104 NMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
            +       +    +T  +S + L     +  L+      +   S +     + L +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIK---SIDGVEYLNNLTQINF 73

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
             N+L       +LT   +L +I ++  +     P           +  + +       N
Sbjct: 74  SNNQLTDITPLKNLT---KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 224 WLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH 283
               N                  ++  N +  ++ +    +  Q      +    P    
Sbjct: 131 LTNLN----------------RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174

Query: 284 FNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFT 343
             + R  ++ +    + +     +L+ L  +NN +          LTNL  L L+ NQ  
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 232

Query: 344 GGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNF 403
                 L + + L  L L++N IS   P  L  L+ L ++ +  N +    P        
Sbjct: 233 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL- 287

Query: 404 LTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRI 463
                    N    +    +   LT + L  N I           L  L  + N+ S   
Sbjct: 288 --TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-- 343

Query: 464 PNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHN 505
            + +  L+++++L   +N +    P  L  L ++  + L+  
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.7 bits (182), Expect = 9e-15
 Identities = 64/382 (16%), Positives = 122/382 (31%), Gaps = 40/382 (10%)

Query: 31  NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIG 90
           +   +  L  D     I+ +  +  L ++  ++  N  L   +  + L +LV +   +  
Sbjct: 42  DLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 99

Query: 91  YNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFE 150
             +I        +   +L    I       N+++             +S+N      +  
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--------LSSNTISDISALS 151

Query: 151 PFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYV 210
              +  +L       +   +   +           +S        T    L         
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA------- 204

Query: 211 DLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHI 270
             ++  +    P  +L N   L+ L L  N L     +    L  LT +D++ N I    
Sbjct: 205 --TNNQISDITPLGILTN---LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLA 257

Query: 271 PTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLT 330
           P      L +L    +  N ++   P +    +            N  Q    S   NL 
Sbjct: 258 PLS---GLTKLTELKLGANQISNISPLAGLTALTNL-------ELNENQLEDISPISNLK 307

Query: 331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHL 390
           NL  L L  N  +   P  + + + L  L+ ++N +S      L NL+N+  +   +N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 391 EGPIPANLCKLNFLTVLDLEVN 412
               P  L  L  +T L L   
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 70/436 (16%), Positives = 133/436 (30%), Gaps = 73/436 (16%)

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNI 286
               E    +L   +++    +    L Q+TT+   +  I+     G+  +L  L   N 
Sbjct: 19  TALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKS--IDGVE-YLNNLTQINF 73

Query: 287 SRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGI 346
           S N L    P           L  + ++NN +       +      +TL  +       +
Sbjct: 74  SNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 347 PENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTV 406
                         L++ +        + ++S L  +        G    +L  L  LT 
Sbjct: 129 K------------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 407 LDLEVNNISGSLPSCFSSWLLTQVHL--SRNKIEGQLEDVFGDILVTLDLSYNRFSGRIP 464
           L+    + +        + L     L  + N+I           L  L L+ N+      
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--I 234

Query: 465 NWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGN 524
             +  L++L+ L LANN +    P  L  L +L  + L  N +S   P            
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---------- 282

Query: 525 YDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLD 584
                                         +    ++E              LK +  L 
Sbjct: 283 -----------------------------GLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 585 LSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
           L  N ++   P     L  ++ L  ++N +  +  S+ ++L+ I  L   +N +    P 
Sbjct: 314 LYFNNISDISPV--SSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP- 368

Query: 645 QLVELYALAIFSVAHN 660
            L  L  +    +   
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 11  WTPFPNLETLELRDYHL-ELLNFTNLEVLIL-DGSALHIRFLQSIAVLTSVKHLSMRNCY 68
            +    L  L+L    +  +     L  L   + +   +  +  I+ L ++ +L++    
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLR 128
           +   SD   +  L  LQ L    N +       L N+T++  L    NQI+      PL 
Sbjct: 319 I---SDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT---PLA 370

Query: 129 YLTSLEELRVSNN 141
            LT + +L +++ 
Sbjct: 371 NLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 53/321 (16%), Positives = 86/321 (26%), Gaps = 41/321 (12%)

Query: 189 SGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQM 248
             C C         Y             L+   P  +       + + L  N +S     
Sbjct: 4   GACVC---------YNEPKVTTSCPQQGLQ-AVPVGIPAA---SQRIFLHGNRISHVPAA 50

Query: 249 PVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSL 308
                + LT + +  N +               +        L    P + H       L
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG---LGRL 107

Query: 309 QILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISG 368
             L L    LQ         L  L  L L  N       +   +   L  L+L  N IS 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 369 KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLT 428
              +    L +L  +++  N +    P     L  L  L L  NN+S       +     
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--- 224

Query: 429 QVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488
                               L  L L+ N +           + L     +++ +   +P
Sbjct: 225 ------------------RALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265

Query: 489 VQLCLLKQLQLIDLSHNNLSG 509
            +   L    L  L+ N+L G
Sbjct: 266 QR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 7e-11
 Identities = 55/278 (19%), Positives = 83/278 (29%), Gaps = 27/278 (9%)

Query: 244 GFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTM 303
           G   +PV        I +  N I   +P         L    +  NVL      +     
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 304 GCFSLQILALSNNSLQGHIFSRSFN-LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS 362
               L +   S+N+    +   +F+ L  L TL LD        P      + L  LYL 
Sbjct: 81  LLEQLDL---SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCF 422
           DN +         +L NL  + +  N +          L+ L  L L  N ++   P  F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 423 SSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNN 482
                                          L  N  S      +  L  L YL L +N 
Sbjct: 198 RDLGRLMTL---------------------YLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTAL 520
              +   +  L   LQ    S + +  ++P  L    L
Sbjct: 237 WVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 47/286 (16%), Positives = 80/286 (27%), Gaps = 43/286 (15%)

Query: 359 LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
           ++L  N IS           NL  + + +N L     A    L  L  LDL  N    S+
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 419 PSCFSSWL--LTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLS 474
                  L  L  +HL R  ++     +F  +  L  L L  N       +    L +L+
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG 534
           +L L  N +          L  L  + L  N ++   P                      
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL---------------- 200

Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI 594
                                     +     +         L+ +  L L+ N    + 
Sbjct: 201 -------------------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 595 PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG 640
                    ++    S + +  ++P   +         L+ N LQG
Sbjct: 242 RA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 38/248 (15%), Positives = 64/248 (25%), Gaps = 13/248 (5%)

Query: 445 FGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSH 504
           + +  VT           +P  I   +    + L  N +           + L ++ L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 505 NNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFR 564
           N L+    +     AL E    S                    +            ++  
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----------ATFHGLGRLHTLHLDRC 115

Query: 565 TKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSH 624
                     R L  +  L L  N L          L  +  L L  N +       F  
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 625 LSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGN 684
           L  ++ L L  N +    P    +L  L    +  NNLS    + +           + N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 685 SLLCGQPL 692
             +C    
Sbjct: 236 PWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 16/262 (6%)

Query: 14  FPNLETLELRDYHLELL------NFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNC 67
               + + L    +  +         NL +L L  + L      +   L  ++ L + + 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 68  YLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPL 127
               + D      L  L  LH+    +    P     + +L+ L +  N +      +  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-F 149

Query: 128 RYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
           R L +L  L +  N+    +    F     L +    +NR    +  H+     +L  + 
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207

Query: 188 LSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN-WLLENNKELETLLLANNSLSGFF 246
           L            L     L+Y+ L+      +     L      L+    +++ +    
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW---LQKFRGSSSEVPC-- 262

Query: 247 QMPVNPLKQLTTIDVSKNFIQG 268
            +P   L       ++ N +QG
Sbjct: 263 SLPQR-LAGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 54/261 (20%), Positives = 86/261 (32%), Gaps = 13/261 (4%)

Query: 255 QLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALS 314
            L  +  S   ++  +P  +    P     ++  N +               +L  L L 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 63

Query: 315 NNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWL 374
           NN +          L  L  L L  NQ      +       L         +   +   L
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 375 GNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSR 434
            N   +V++        G        +  L+ + +   NI+        S  LT++HL  
Sbjct: 124 -NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDG 180

Query: 435 NKIEGQLEDVFGD--ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLC 492
           NKI             L  L LS+N  S      +    HL  L L NN L  +VP  L 
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 239

Query: 493 LLKQLQLIDLSHNNLSGTIPS 513
             K +Q++ L +NN+S    +
Sbjct: 240 DHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 7e-14
 Identities = 55/298 (18%), Positives = 98/298 (32%), Gaps = 27/298 (9%)

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFI 266
              +DL +  +     +   +N K L TL+L NN +S        PL +L  + +SKN +
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 267 QGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRS 326
           +  +P  +   L  L             +  S+   +    +  L  +     G      
Sbjct: 92  K-ELPEKMPKTLQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 327 FNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMP 386
             +  L  +++     T  IP+ L     L  L+L  N I+      L  L+NL  + + 
Sbjct: 147 QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG 446
            N +      +L     L  L L  N +            +  V+L  N I     + F 
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF- 262

Query: 447 DILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE--VPVQLCLLKQLQLIDL 502
                            P +  K +  S + L +N ++     P     +     + L
Sbjct: 263 ---------------CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 29/287 (10%)

Query: 359 LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
           L L +N I+        NL NL  +I+ NN +    P     L  L  L L  N +   L
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 94

Query: 419 PSCFSSWLLTQVHLSRNKIEGQLEDVFG----DILVTLDLSYNRFSGRIPNWIDKLSHLS 474
           P      L  ++ +  N+I    + VF      I+V L  +  + SG        +  LS
Sbjct: 95  PEKMPKTL-QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG 534
           Y+ +A+ N+     +   L   L  + L  N ++    + L           S    S  
Sbjct: 154 YIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTG-- 592
           + G+ +           ++ + K        K                + L  N ++   
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV------------VYLHNNNISAIG 258

Query: 593 ----EIPFQIGYLNMIRALNLSHNNL--MGTIPSTFSHLSQIESLDL 633
                 P           ++L  N +      PSTF  +    ++ L
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 6e-13
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 1/208 (0%)

Query: 307 SLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHI 366
              +L L NN +         NL NL TL L  N+ +   P        L  LYLS N +
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 367 SGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWL 426
                K    L  L         +   +   L ++  + +    + +      +      
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 427 LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGE 486
           L+ + ++   I    + +    L  L L  N+ +      +  L++L+ L L+ N++   
Sbjct: 152 LSYIRIADTNITTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 487 VPVQLCLLKQLQLIDLSHNNLSGTIPSC 514
               L     L+ + L++N L       
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 16/286 (5%)

Query: 57  TSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASN 116
                L ++N  +    D      L +L  L +  N I    P     +  L  L ++ N
Sbjct: 31  PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 117 QITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHS 176
           Q+       P +   +L+ELRV  N+            +  +    G        IE+ +
Sbjct: 90  QLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 177 LTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLL 236
                +L  I ++                 L  + L    +        L+    L  L 
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAAS-LKGLNNLAKLG 201

Query: 237 LANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN---VLNG 293
           L+ NS+S      +     L  + ++ N +              ++   +  N    +  
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGS 259

Query: 294 SIPCSLHMTMGCFSLQILALSNNSLQ-GHIFSRSFN-LTNLVTLQL 337
           +  C         S   ++L +N +Q   I   +F  +     +QL
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 8e-10
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 10/262 (3%)

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
              LDL  N+ +         L +L  LIL NN +    P     L +L+ + LS N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT 568
                          + +      +  +   +      +  +   +   E       K  
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 569 SYYY---------QGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP 619
           SY              +   +  L L  NK+T      +  LN +  L LS N++     
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 620 STFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTEN 679
            + ++   +  L L+ N L  K+P  L +   + +  + +NN+S    +        T+ 
Sbjct: 213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 680 SYDGNSLLCGQPLSESCYPNGS 701
           +      L   P+        +
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 7e-08
 Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 24/266 (9%)

Query: 15  PNLETLELRDYHL------ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCY 68
           P+   L+L++  +      +  N  NL  LIL  + +      + A L  ++ L +    
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 69  LYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITG-NISSSPL 127
           L    +          QEL +  N I          +  + ++++ +N +    I +   
Sbjct: 91  LKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 128 RYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNIS 187
           + +  L  +R+++      I+  P      L + +   N++     + SL     L  + 
Sbjct: 147 QGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLG 201

Query: 188 LSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQ 247
           LS           L     LR + L++  L          ++K ++ + L NN++S    
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGS 259

Query: 248 MPVNP------LKQLTTIDVSKNFIQ 267
               P          + + +  N +Q
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 34/221 (15%), Positives = 57/221 (25%), Gaps = 21/221 (9%)

Query: 471 SHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYK-TALGEGNYDSAA 529
              + L L NN +          LK L  + L +N +S   P        L         
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 530 PTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSC-- 587
                              P       +E  V               L  M  ++L    
Sbjct: 91  LKE---------------LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 588 NKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLV 647
            K +G        +  +  + ++  N+          L     L L  N +       L 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLK 192

Query: 648 ELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC 688
            L  LA   ++ N++S      +       E   + N L+ 
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 19/268 (7%)

Query: 375 GNLSNLVDIIMPNNHLEG--PIPANLCKLNFLTVLDLE--VNNISGSLPSCFSSWLLTQV 430
                + ++ +   +L    PIP++L  L +L  L +    N +    P+      L  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 431 HLSRNKIEGQL--EDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP 488
           +++   + G +         LVTLD SYN  SG +P  I  L +L  +    N + G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 489 VQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVS 548
                  +L        N             L      + A  +      S        S
Sbjct: 167 DSYGSFSKLFTSMTISRNR------------LTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 549 PSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN 608
               S    ++    +        +  + K + GLDL  N++ G +P  +  L  + +LN
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 609 LSHNNLMGTIPSTFSHLSQIESLDLSYN 636
           +S NNL G IP    +L + +    + N
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 56/238 (23%), Positives = 83/238 (34%), Gaps = 4/238 (1%)

Query: 280 RLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN-SLQGHIFSRSFNLTNLVTLQLD 338
           R+ + ++S   L    P    +      L  L +    +L G I      LT L  L + 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 339 ANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANL 398
               +G IP+ L     L  L  S N +SG +P  + +L NLV I    N + G IP + 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 399 CKLNFLTVLDLEVNN--ISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSY 456
              + L        N       P+  +  L                    D         
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 457 NRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSC 514
                     +    +L+ L L NN + G +P  L  LK L  +++S NNL G IP  
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 54/296 (18%), Positives = 94/296 (31%), Gaps = 43/296 (14%)

Query: 404 LTVLDLEVNNISG--SLPSCFSSW-LLTQVHLSRNK---IEGQLEDVFGDILVTLDLSYN 457
           +  LDL   N+     +PS  ++   L  +++                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 458 RFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYK 517
             SG IP+++ ++  L  L  + N L G +P  +  L  L  I    N +SG IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 518 TALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRIL 577
            +    +   +     G    +               +        R             
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFA------------NLNLAFVDLSRNMLEGDASVLFGS 219

Query: 578 KIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM 637
                              ++G    +  L+L +N + GT+P   + L  + SL++S+N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 638 LQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
           L G+IP                           G    F  ++Y  N  LCG PL 
Sbjct: 280 LCGEIPQ-------------------------GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 41/269 (15%), Positives = 72/269 (26%), Gaps = 29/269 (10%)

Query: 108 LRILDIASNQITGNISSSP-LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKN 166
           +  LD++   +         L  L  L  L +      +          ++L   Y    
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 167 RLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLL 226
                     L+    L  +  S      T P  +     L  +      + G  P+   
Sbjct: 112 N-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 227 ENNKELETLLLANNSLSGFFQMPVNPLKQLTTID---------------------VSKNF 265
             +K   ++ ++ N L+G        L                            +    
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 266 IQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSR 325
                  G       L   ++  N + G++P  L        L  L +S N+L G I  +
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEI-PQ 286

Query: 326 SFNLTNLVTLQLDANQFTGGIPENLLNCS 354
             NL          N+   G P  L  C+
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 7/257 (2%)

Query: 182 QLQNISLSGCRC--DFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
           ++ N+ LSG      +  P  L     L ++ +  +N         +    +L  L + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSL 299
            ++SG     ++ +K L T+D S N + G +P  I +  P L       N ++G+IP S 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDS- 168

Query: 300 HMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGL 359
                      + +S N L G I     NL                      + +     
Sbjct: 169 -YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN--TQK 225

Query: 360 YLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP 419
                +        +G   NL  + + NN + G +P  L +L FL  L++  NN+ G +P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 420 SCFSSWLLTQVHLSRNK 436
              +         + NK
Sbjct: 286 QGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 88  HIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
            +  N I GTLP  L  +  L  L+++ N + G I       L   +    +NN+ 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 6e-09
 Identities = 49/447 (10%), Positives = 108/447 (24%), Gaps = 15/447 (3%)

Query: 82  VHLQELHIGYNNIGGT-LPWCLVNMTSLRILDIASNQITGNIS---SSPLRYLTSLEELR 137
           + +Q L I    +        L  +   +++ +    +T       SS LR   +L EL 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 138 VSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTF 197
           + +N+    +         +      QK  L     + +          +L   +     
Sbjct: 62  LRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 198 PRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLT 257
              L         +             L   +    +     + L          +    
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
             +     +   +          L+  +      N    C +  +        L  +   
Sbjct: 181 INEAGVRVLCQGLKDSPCQL-EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 318 LQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNL 377
             G        L     L+       G   +   +   +     S   +S    +     
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 378 SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKI 437
           + L+   +     +                    + ++ +           ++  +  + 
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 438 EGQLEDVFGDILVTLDLSYNRFSGR----IPNWIDKLSHLSYLILANNNLEGEVPVQLC- 492
             Q     G +L  L L+    S      +   +     L  L L+NN L     +QL  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 493 ----LLKQLQLIDLSHNNLSGTIPSCL 515
                   L+ + L     S  +   L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 52/458 (11%), Positives = 102/458 (22%), Gaps = 28/458 (6%)

Query: 58  SVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGG----TLPWCLVNMTSLRILDI 113
            ++ L ++   L      + L  L   Q + +    +       +   L    +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 114 ASNQITG----NISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLF 169
            SN++       +          +++L + N                 L           
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 170 VEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENN 229
           +  ++        L +      +    +        E     L       E      + N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 230 KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
           +           L    +     L+ L                GI A    L    +  N
Sbjct: 183 EA------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 290 VLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEN 349
            L       L   +   S ++  L                  L   +        G    
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDL 409
                LL    L        +     + +        +   +      L   N       
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 410 EVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI------LVTLDLSYNRFSGRI 463
                 G         +L  + L+   +                 L  LDLS N      
Sbjct: 357 VRELCQGLGQPG---SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 464 PNWI-----DKLSHLSYLILANNNLEGEVPVQLCLLKQ 496
              +          L  L+L +     E+  +L  L++
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 583 LDLSCNKLTGEIPFQI-GYLNMIRALNLSHNNL----MGTIPSTFSHLSQIESLDLSYNM 637
           LD+ C +L+     ++   L   + + L    L       I S       +  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 638 LQGKIPTQLVELYALAIFSVAHNNLSG 664
           L       +++        +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 27/178 (15%), Positives = 49/178 (27%), Gaps = 1/178 (0%)

Query: 330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH 389
            +   L L  N         L+  + L  L L    ++         +   +D+      
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 390 LEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDIL 449
               +   L  L  L V    + ++               +  +  K            L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
             L L+ N  +      ++ L +L  L+L  N+L   +P        L    L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 42/223 (18%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 419 PSCFSSWL--LTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYL 476
           P C  S +    +V+  +  +     D+  D    L LS N         +   + L+ L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 477 ILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNY 536
            L  +  E         L  L  +DLSHN L           AL   +      TS    
Sbjct: 61  NL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 537 GASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPF 596
                   + +   G+        +   T                    + N LT     
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL------------ANNNLTELPAG 166

Query: 597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
            +  L  +  L L  N+L  TIP  F     +    L  N   
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 7/206 (3%)

Query: 230 KELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRN 289
            ++ + L  N        +P +  K  T + +S+N +             RL   N+ R 
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRA 65

Query: 290 VLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPEN 349
                   +     G   +      +++    +      L  L  L +  N+ T      
Sbjct: 66  ------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 350 LLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDL 409
           L     L  LYL  N +    P  L     L  + + NN+L       L  L  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 410 EVNNISGSLPSCFSSWLLTQVHLSRN 435
           + N++       F S LL    L  N
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/214 (16%), Positives = 62/214 (28%), Gaps = 18/214 (8%)

Query: 449 LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLS 508
            + ++      +  +P  + K    + L L+ N L       L    +L  ++L    L+
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNT 568
                                    G    S            +        V F    +
Sbjct: 69  KLQVDGTL--------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 569 SYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQI 628
                 R L  +  L L  N+L    P  +     +  L+L++NNL        + L  +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 629 ESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNL 662
           ++L L  N L   IP      + L    +  N  
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 37/190 (19%), Positives = 58/190 (30%), Gaps = 4/190 (2%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
            + + + +  D    T  +P +L        L+LS+N +       L   + L  + +  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGD 447
             L          +     L          L     +  +  V  +R             
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 448 ILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNL 507
            L  L L  N      P  +     L  L LANNNL       L  L+ L  + L  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 508 SGTIPSCLYK 517
             TIP   + 
Sbjct: 185 Y-TIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 33/182 (18%), Positives = 49/182 (26%), Gaps = 8/182 (4%)

Query: 83  HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQ 142
               LH+  N +       L+  T L  L++   ++T       L  L +       +  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT------LDLS 85

Query: 143 FQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLY 202
                S                       +   +L    +LQ + L G       P  L 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LL 144

Query: 203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVS 262
                        N   E P  LL   + L+TLLL  NSL             L    + 
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 263 KN 264
            N
Sbjct: 204 GN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 9/187 (4%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
               IL ++ N +    S + L   T L +L +   +               L       
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLD 83

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
                      L        +         + P                 N     P  L
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
           L    +LE L LANN+L+      +N L+ L T+ + +N +   IP G       L    
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAF 201

Query: 286 ISRNVLN 292
           +  N   
Sbjct: 202 LHGNPWL 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 26/235 (11%)

Query: 81  LVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
           L +  ++  G +N+  T+     ++  +  L      +T   +   ++YL +L  L + +
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 141 NQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRF 200
           NQ       +     ++L+        +       S+                       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTID 260
           + Y    +  ++S +          + N +  +   LAN               +LTT+ 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-------------SKLTTLK 179

Query: 261 VSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSN 315
              N I    P      LP L   ++  N ++   P +        +L I+ L+N
Sbjct: 180 ADDNKISDISPLA---SLPNLIEVHLKNNQISDVSPLA-----NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 23/202 (11%)

Query: 328 NLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPN 387
            L N + +    +  T  + +  L+   +  L      ++    + +  L+NL+ + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 388 NHLEGPIPANLCKLNFLTVLDLEVNNISGS-----------------LPSCFSSWLLTQV 430
           N +    P           L         +                       + L    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQ 490
            L  +  +         +     LS           +  LS L+ L   +N +    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 491 LCLLKQLQLIDLSHNNLSGTIP 512
           L  L  L  + L +N +S   P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 104 NMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG 163
            + +   +    + +T  ++      L  +  L           + E     + L     
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLEL 70

Query: 164 QKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPN 223
           + N++       +L              +           ++      L  +        
Sbjct: 71  KDNQITDLAPLKNL-------------TKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 224 WLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEH 283
            + +         L    L       ++PL  LT +                A L +L  
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 284 FNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQ 341
                N ++   P +        +L  + L NN +         N +NL  + L  NQ
Sbjct: 178 LKADDNKISDISPLA-----SLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 46  HIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNM 105
            +  + +I+ L  + +L   +      SD   L  L  L  L    N I    P  L ++
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSN 140
            +L  + + +NQI+     SPL   ++L  + ++N
Sbjct: 195 PNLIEVHLKNNQISD---VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 29/201 (14%), Positives = 51/201 (25%), Gaps = 18/201 (8%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
           +D     +L  +  L      +  T    +  + +L  L++  NQIT       L  +T 
Sbjct: 32  TDTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITE 89

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTP-----------KF 181
           LE               +                 L        L               
Sbjct: 90  LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG 149

Query: 182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNS 241
                 LS      +    L    +L  +      +    P   L +   L  + L NN 
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQ 206

Query: 242 LSGFFQMPVNPLKQLTTIDVS 262
           +S     P+     L  + ++
Sbjct: 207 ISDV--SPLANTSNLFIVTLT 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG 446
           +  L   +  +L +L  +T LDL  N +    P+  +   L  +  S N +E        
Sbjct: 7   HKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64

Query: 447 DILVTLDLSYNRF-SGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497
             L  L L  NR         +     L  L L  N+L  E  +Q  L + L
Sbjct: 65  PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 406 VLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPN 465
           VL L   +++  L       L+T + LS N++      +     + +  + +     +  
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 466 WIDKLSHLSYLILANNNLEG-EVPVQLCLLKQLQLIDLSHNNLSG 509
             +    L  L+L NN L+       L    +L L++L  N+L  
Sbjct: 61  VANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 39  ILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTL 98
           +L  +   +  L  +  L  V HL + +  L   +    L  L  L+ L    N +    
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD 59

Query: 99  PWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQF 143
               +     + L + +N++  + +  PL     L  L +  N  
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 28  ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQEL 87
            L     +  L L  + L          L +++ L +         +  G+  L  LQEL
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALP----PALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 88  HIGYNNI-GGTLPWCLVNMTSLRILDIASNQITG--NISSSPLRYLTSLEEL 136
            +  N +        LV+   L +L++  N +     I       L S+  +
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 85  QELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQ 144
           + LH+ + ++  T+   L  +  +  LD++ N++     +     L +L  L V      
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN 53

Query: 145 IPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRC 193
              + +   N  +L++     NRL        L    +L  ++L G   
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 605 RALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPT 644
           R L+L+H +L  T+      L  +  LDLS+N L+   P 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA 38

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 34/274 (12%), Positives = 80/274 (29%), Gaps = 23/274 (8%)

Query: 257 TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN 316
            T+D++   +   +   +      +  F   R+ ++  +          F +Q + LSN+
Sbjct: 3   QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHF----SPFRVQHMDLSNS 56

Query: 317 SLQGHIFSRSF-NLTNLVTLQLDANQFTGGIPENLLNCSLLGGL--YLSDNHISGKIPKW 373
            ++           + L  L L+  + +  I   L   S L  L            +   
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 374 LGNLSNLVDIIMPNNHLEG------PIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLL 427
           L + S L ++ +              +      +  L +     N     L +       
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 428 TQVHLS----RNKIEGQLEDVFGDILVTLDLSY-NRFSGRIPNWIDKLSHLSYLILANNN 482
                       K +   E    + L  L LS            + ++  L  L +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 483 LEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY 516
            +G + +   L + L  + ++ ++ +      + 
Sbjct: 237 PDGTLQL---LKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 37/257 (14%), Positives = 77/257 (29%), Gaps = 16/257 (6%)

Query: 10  LWTPFPNLETLELRDYHL---ELLNFTNLEVLILDGSALHIRF-LQSIAVLTSVKHLSMR 65
           LW       TL+L   +L         +  V+        +   L        V+H+ + 
Sbjct: 1   LWQ------TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 54

Query: 66  NCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQ-ITGNISS 124
           N  +  ++    L +   LQ L +    +   +   L   ++L  L+++     +     
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 125 SPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYG-----QKNRLFVEIESHSLTP 179
           + L   + L+EL +S          +    H             +KN    ++ +     
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 180 KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN 239
              +               +  +  + L+++ LS            L     L+TL +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 240 NSLSGFFQMPVNPLKQL 256
               G  Q+    L  L
Sbjct: 235 IVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 7/247 (2%)

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEG-QLEDVF 445
             +L   +   L     +       + +   L   FS + +  + LS + IE   L  + 
Sbjct: 9   GKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 446 GDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLS 503
                L  L L   R S  I N + K S+L  L L+  +   E  +Q  L    +L +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 504 HNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEF 563
            +           + A+   +         G       +    +     + +  + S   
Sbjct: 128 LSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 564 RTKNTSYYYQGRILKIMFGLDLS-CNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTF 622
             KN  +    ++   +  L LS C  +  E   ++G +  ++ L +      GT+    
Sbjct: 187 MLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 245

Query: 623 SHLSQIE 629
             L  ++
Sbjct: 246 EALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 583 LDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGK- 641
           LDL+   L  ++  ++     + A     + +   +   FS   +++ +DLS ++++   
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 642 IPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLSESCYP 698
           +   L +   L   S+    LS  + + + + +     +  G S      L      
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 39/304 (12%), Positives = 79/304 (25%), Gaps = 24/304 (7%)

Query: 102 LVNMTSLRILDIASNQITGNIS---SSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKL 158
           L+   S++ + ++ N I    +   S  +     LE    S+          P      L
Sbjct: 27  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 86

Query: 159 KKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLR 218
           +          V +  ++  P  Q   I                     +        L+
Sbjct: 87  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 146

Query: 219 GEFPNWLLENNKELETLLLANNSLS----GFFQMPVNPLKQLTTIDVSKN-----FIQGH 269
               N   +N   L +++   N L       +       + L T+ + +N      I+  
Sbjct: 147 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 206

Query: 270 IPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFS----- 324
           +  G+                 +              +L+ L L++  L     +     
Sbjct: 207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266

Query: 325 -RSFNLTNLVTLQLDANQFTGGIPENLL-----NCSLLGGLYLSDNHISGKIPKWLGNLS 378
                   L TL+L  N+        L          L  L L+ N    +    +  + 
Sbjct: 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIR 325

Query: 379 NLVD 382
            +  
Sbjct: 326 EVFS 329

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 13/304 (4%)

Query: 80  ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVS 139
              HL+ L    N++   LP    ++ SL + +     ++          +++ +  ++ 
Sbjct: 56  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 114

Query: 140 NNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSL---TPKFQLQNISLSGCRCDFT 196
             Q    +      N+S  K      +  F+   ++ L        L  ++      +  
Sbjct: 115 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 174

Query: 197 FPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQL 256
                        V  +++         L           L          +    ++  
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 257 TTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNN 316
              D+ +                 L     +   LN S      +     SL+ L +SNN
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 317 SLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGN 376
            L             L  L    N     +PE   N   L  L++  N +  + P    +
Sbjct: 295 KLI----ELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPES 345

Query: 377 LSNL 380
           + +L
Sbjct: 346 VEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 387 NNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFG 446
            N     I +       L  L++  N +   LP+      L ++  S N +  ++ ++  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR--LERLIASFNHLA-EVPELPQ 324

Query: 447 DILVTLDLSYNRFSGRIPNWIDKLSHL 473
           + L  L + YN      P+  + +  L
Sbjct: 325 N-LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 47/318 (14%), Positives = 96/318 (30%), Gaps = 23/318 (7%)

Query: 207 LRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGF---------FQMPVNPLKQLT 257
              ++L+++ L    P         LE+L+ + NSL+             +  N LK L+
Sbjct: 40  AHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 258 TIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
            +     ++             +   F    +V N S+     +      +         
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 318 LQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNL 377
           L                  L          E+++  + +        ++      +  N 
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 378 SNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKI 437
                  +P +     +  N           L   ++S ++ S  S       +L+ +  
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 438 EGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL 497
           E +        L  L++S N+    +P        L  LI + N+L  EVP    L + L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVP---ELPQNL 326

Query: 498 QLIDLSHNNLSGTIPSCL 515
           + + + +N L    P   
Sbjct: 327 KQLHVEYNPLR-EFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 48/314 (15%), Positives = 86/314 (27%), Gaps = 25/314 (7%)

Query: 7   LQSLWTPFPNLETLELRDYHLELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRN 66
           L SL    P+LE+L      L     T L  L     +L +      A+      L    
Sbjct: 50  LSSLPELPPHLESLVASCNSL-----TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLG 104

Query: 67  CYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSP 126
                      L     L+ + +  N++            SL  +   +NQ+        
Sbjct: 105 VSNNQLEKLPELQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 127 LRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNI 186
           L +LT++     S  +                      + +    + +            
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 187 SLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFF 246
                         +   +     +L       +    +     EL   L   N+ S   
Sbjct: 221 ----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 247 QMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCF 306
           +   +    L  ++VS N +       + A  PRLE    S N L   +P          
Sbjct: 277 RSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLA-EVPELPQ------ 324

Query: 307 SLQILALSNNSLQG 320
           +L+ L +  N L+ 
Sbjct: 325 NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 54/310 (17%), Positives = 90/310 (29%), Gaps = 18/310 (5%)

Query: 359 LYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSL 418
           L L++  +S  +P+   +L +L   +   N L   +P     L  L V +  +  +S   
Sbjct: 43  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 419 PS----CFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLS 474
           P       S+  L ++   +N    ++ DV  + L  L                      
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 475 YLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEG 534
              L            L  L  L L   S    +  +        L       A      
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 535 NYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEI 594
                 P+         +      E  +  T           L  +       N  + EI
Sbjct: 218 TLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 595 PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAI 654
                    +  LN+S+N L+  +P+    L   E L  S+N L  ++P     L  L  
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL-- 329

Query: 655 FSVAHNNLSG 664
             V +N L  
Sbjct: 330 -HVEYNPLRE 338

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPS-TFSHLSQIESLDLSYNMLQG 640
           GL  + +    +    +     +  L + +   +  +       L ++ +L +  + L+ 
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 641 KIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPLS 693
             P        L+  +++ N L   +  +  Q  +  E    GN L C   L 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 4/212 (1%)

Query: 106 TSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLKKFYGQK 165
            +   L     ++   I          LE++ +S N     I  + F N  KL +   +K
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 166 NRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWL 225
               + I   +      LQ + +S             +  +   +D+             
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 226 LENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFN 285
                    +L  N +             QL  +++S N     +P  +          +
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 286 ISRNVLNGSIPCSLHMTMGCFSLQILALSNNS 317
           ISR  ++      L        L+  +  N  
Sbjct: 208 ISRTRIHSLPSYGLE---NLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 18/190 (9%)

Query: 73  SDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTS 132
           +D     EL  + ++    ++I       +  + ++  L +  N++T     + L+ L  
Sbjct: 37  TDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLG- 93

Query: 133 LEELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCR 192
              L +  N+ +   S +       L   +   + +   +    L   +   N       
Sbjct: 94  --WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV 151

Query: 193 CDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNP 252
                        + +  D+             L    +L+ L L+ N +S      +  
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKNHISDL--RALAG 198

Query: 253 LKQLTTIDVS 262
           LK L  +++ 
Sbjct: 199 LKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 589 KLTGEIPFQIG-YLNM--IRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQ 639
           KLT E+  Q   Y N    R L+L    +   I +  + L Q +++D S N ++
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	779
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.6e-30  Score=265.10  Aligned_cols=258  Identities=33%  Similarity=0.517  Sum_probs=220.8

Q ss_pred             CCCCEEEccCCccCC--CcchhhhCCCCCceEEccC-CCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccE
Q 046050          354 SLLGGLYLSDNHISG--KIPKWLGNLSNLVDIIMPN-NHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQ  429 (779)
Q Consensus       354 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~  429 (779)
                      .+++.|+|+++.+++  .+|..++++++|++|++++ |.+.|.+|..|.++++|++|++++|++.+..+..+. ...   
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~---  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT---  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT---
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh---
Confidence            468888999888887  4678888888888888886 788888888888888888888888888876665443 333   


Q ss_pred             EEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCC-CEEEccCCcCc
Q 046050          430 VHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQL-QLIDLSHNNLS  508 (779)
Q Consensus       430 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~  508 (779)
                                         |+.+++++|.+.+.+|..+.+++.++.+++++|++.+.+|..+..+..+ +.+++++|+++
T Consensus       127 -------------------L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         127 -------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             -------------------CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             -------------------hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence                               5566666666667888899999999999999999999999999888876 89999999999


Q ss_pred             ccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCC
Q 046050          509 GTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCN  588 (779)
Q Consensus       509 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  588 (779)
                      +..|..+.       .                                                     .....++++++
T Consensus       188 ~~~~~~~~-------~-----------------------------------------------------l~~~~l~l~~~  207 (313)
T d1ogqa_         188 GKIPPTFA-------N-----------------------------------------------------LNLAFVDLSRN  207 (313)
T ss_dssp             EECCGGGG-------G-----------------------------------------------------CCCSEEECCSS
T ss_pred             cccccccc-------c-----------------------------------------------------ccccccccccc
Confidence            88777651       1                                                     12346899999


Q ss_pred             ccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCC
Q 046050          589 KLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPD  668 (779)
Q Consensus       589 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  668 (779)
                      ...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|..|.++++|++|+|++|+++|.+|+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999999999999997655 688999999999999999999999999999999999999999999998


Q ss_pred             CCCcCCCCCCCcccCCCCCCCCCCCCCC
Q 046050          669 RVGQFATFTENSYDGNSLLCGQPLSESC  696 (779)
Q Consensus       669 ~~~~~~~l~~~~~~~N~~lc~~~l~~~c  696 (779)
                       ++.+.+++.+++.||+.+||.|++ .|
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -cccCCCCCHHHhCCCccccCCCCC-CC
Confidence             588999999999999999999886 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.9e-28  Score=253.53  Aligned_cols=253  Identities=29%  Similarity=0.481  Sum_probs=205.9

Q ss_pred             CCCCCEEEccCCcCcc--ccCccccCCCCCCEEEccC-CccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCC
Q 046050          329 LTNLVTLQLDANQFTG--GIPENLLNCSLLGGLYLSD-NHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLT  405 (779)
Q Consensus       329 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  405 (779)
                      ..+++.|+++++.+.+  .+|..+.++++|++|+|++ |.++|.+|..++++++|++|++++|++.+..+..+..++.|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3478999999999987  4789999999999999997 899999999999999999999999999998999999999999


Q ss_pred             EEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCC-cEEEccCCcC
Q 046050          406 VLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHL-SYLILANNNL  483 (779)
Q Consensus       406 ~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l  483 (779)
                      .+++++|.+.+.+|..+. ++.++.+++++|.+                      .+.+|..+..+..+ +.+++++|++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l----------------------~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRI----------------------SGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCC----------------------EEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccccCchhhccCcccceeecccccc----------------------ccccccccccccccccccccccccc
Confidence            999999999888876655 55555555555544                      44556666666554 6777777777


Q ss_pred             cccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEE
Q 046050          484 EGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEF  563 (779)
Q Consensus       484 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (779)
                      ++..|..+..+..+ .++++++...+.+|...       +.                                       
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~-------~~---------------------------------------  219 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLF-------GS---------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGC-------CT---------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccc-------cc---------------------------------------
Confidence            77777777666443 67777777776666554       11                                       


Q ss_pred             EEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCc
Q 046050          564 RTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIP  643 (779)
Q Consensus       564 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  643 (779)
                                   ++.++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+++|.+|
T Consensus       220 -------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         220 -------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             -------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             -------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence                         3567778888888876544 67888999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCcEEEccCCc-Cccc
Q 046050          644 TQLVELYALAIFSVAHNN-LSGK  665 (779)
Q Consensus       644 ~~l~~l~~L~~L~ls~N~-l~~~  665 (779)
                      . +.++++|+.+++++|+ ++|.
T Consensus       286 ~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             C-STTGGGSCGGGTCSSSEEEST
T ss_pred             C-cccCCCCCHHHhCCCccccCC
Confidence            5 5789999999999998 4543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.5e-26  Score=242.53  Aligned_cols=342  Identities=21%  Similarity=0.243  Sum_probs=186.0

Q ss_pred             CCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050          203 YQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE  282 (779)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  282 (779)
                      .+.+|++|+++++.++ .+..  ++.+++|++|++++|++++..  .++.+++|++|++++|++. .++. +.. +++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~~-l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LAN-LTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GTT-CTTCC
T ss_pred             HhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-ccc-ccccc
Confidence            3445666666666665 3432  245666666666666666543  2556666666666666665 3332 222 55666


Q ss_pred             EEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEcc
Q 046050          283 HFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLS  362 (779)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  362 (779)
                      .|+++++.+++..+...     ...+.......+.+......................                      
T Consensus       114 ~L~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------  166 (384)
T d2omza2         114 GLTLFNNQITDIDPLKN-----LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT----------------------  166 (384)
T ss_dssp             EEECCSSCCCCCGGGTT-----CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC----------------------
T ss_pred             ccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc----------------------
Confidence            66666655543222111     113334444444333221111111111111111110                      


Q ss_pred             CCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccch
Q 046050          363 DNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLE  442 (779)
Q Consensus       363 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  442 (779)
                             ....+...+.........|...  ....+..+++++.+++++|.+++..+ ....++|+++++++|.++..+.
T Consensus       167 -------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~  236 (384)
T d2omza2         167 -------DLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT  236 (384)
T ss_dssp             -------CCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             -------hhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcch
Confidence                   1112222333333333333322  12223344444555555544443322 1223444555555554444322


Q ss_pred             hhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCC
Q 046050          443 DVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGE  522 (779)
Q Consensus       443 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~  522 (779)
                      -.....++.|++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+++++|.+++ ++. +       
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~-~-------  303 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISP-I-------  303 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGG-G-------
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-ccc-c-------
Confidence            111122666666666666433  2666778888888888877543  26677788888888887763 211 1       


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcc
Q 046050          523 GNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLN  602 (779)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  602 (779)
                                                                          ..++.++.|++++|++++..  .+..++
T Consensus       304 ----------------------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~  329 (384)
T d2omza2         304 ----------------------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLT  329 (384)
T ss_dssp             ----------------------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCT
T ss_pred             ----------------------------------------------------chhcccCeEECCCCCCCCCc--ccccCC
Confidence                                                                11456778888888888543  377888


Q ss_pred             cCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCC
Q 046050          603 MIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHN  660 (779)
Q Consensus       603 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  660 (779)
                      +|++|++++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       330 ~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 KLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            89999999998874 44 58888999999999999886655  788889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=9.8e-26  Score=240.58  Aligned_cols=342  Identities=25%  Similarity=0.306  Sum_probs=239.6

Q ss_pred             CccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEE
Q 046050          180 KFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTI  259 (779)
Q Consensus       180 ~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  259 (779)
                      +.+|++|+++++++...  +.+..+++|++|++++|+++ .++.  ++++++|++|++++|++.++.  .++.+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccccc
Confidence            34799999999998753  56888999999999999999 6665  589999999999999998754  48899999999


Q ss_pred             EccCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccC
Q 046050          260 DVSKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDA  339 (779)
Q Consensus       260 ~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  339 (779)
                      +++++.++ .++....  ...+.......|.+....+......   ............     ...+...+.........
T Consensus       116 ~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  184 (384)
T d2omza2         116 TLFNNQIT-DIDPLKN--LTNLNRLELSSNTISDISALSGLTS---LQQLSFGNQVTD-----LKPLANLTTLERLDISS  184 (384)
T ss_dssp             ECCSSCCC-CCGGGTT--CTTCSEEEEEEEEECCCGGGTTCTT---CSEEEEEESCCC-----CGGGTTCTTCCEEECCS
T ss_pred             cccccccc-ccccccc--ccccccccccccccccccccccccc---ccccccccccch-----hhhhccccccccccccc
Confidence            99999998 4444332  4578888888777653332222110   011222222111     12344455666666666


Q ss_pred             CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCC
Q 046050          340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP  419 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  419 (779)
                      |...  ....+..+++++.+++++|.+++..|  +...++|++|++++|.++..  +.+..+++|+.+++++|.+++..+
T Consensus       185 ~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  258 (384)
T d2omza2         185 NKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  258 (384)
T ss_dssp             SCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc
Confidence            6554  34556788899999999999886554  45678899999999988742  357788888888888888875443


Q ss_pred             cCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 046050          420 SCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQL  499 (779)
Q Consensus       420 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  499 (779)
                       ...+++|++++++++++++..                        .+..++.++.+.+++|++.+.  ..+..+++++.
T Consensus       259 -~~~~~~L~~L~l~~~~l~~~~------------------------~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         259 -LSGLTKLTELKLGANQISNIS------------------------PLAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCG------------------------GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             -ccccccCCEeeccCcccCCCC------------------------ccccccccccccccccccccc--cccchhcccCe
Confidence             333556666666665554332                        244566677777777776642  23566677777


Q ss_pred             EEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccce
Q 046050          500 IDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKI  579 (779)
Q Consensus       500 L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  579 (779)
                      |++++|++++. ++ +                                                           ..+++
T Consensus       312 L~ls~n~l~~l-~~-l-----------------------------------------------------------~~l~~  330 (384)
T d2omza2         312 LTLYFNNISDI-SP-V-----------------------------------------------------------SSLTK  330 (384)
T ss_dssp             EECCSSCCSCC-GG-G-----------------------------------------------------------GGCTT
T ss_pred             EECCCCCCCCC-cc-c-----------------------------------------------------------ccCCC
Confidence            77777777642 21 1                                                           01456


Q ss_pred             eeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCc
Q 046050          580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                      |++|++++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|+|++|.
T Consensus       331 L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         331 LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            7777777777773 44 57889999999999999997655  8899999999999884

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2e-24  Score=222.13  Aligned_cols=265  Identities=21%  Similarity=0.261  Sum_probs=155.0

Q ss_pred             CCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          331 NLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      ..+.++-+++.++ .+|..+.  +++++|++++|+|+...+.+|.++++|++|++++|.+....|..|.+++.|+.|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3456666666666 4565553  567788888887775555577778888888888888776667777788888888888


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCcccc--CcCchhhhcCCCCcEEEccCCcCccc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFS--GRIPNWIDKLSHLSYLILANNNLEGE  486 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~  486 (779)
                      +|+++......  ...+..|++.+|.+.+.....+...  ...++...|...  ...+..+..+++|+.+++++|++.. 
T Consensus        88 ~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-  164 (305)
T d1xkua_          88 KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  164 (305)
T ss_dssp             SSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-
Confidence            88877443322  3456677777777766665555433  455555555332  2233455566666666666666653 


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEc
Q 046050          487 VPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTK  566 (779)
Q Consensus       487 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                      +|..  .+++|+.|++++|..++..+..+       .                                           
T Consensus       165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~-------~-------------------------------------------  192 (305)
T d1xkua_         165 IPQG--LPPSLTELHLDGNKITKVDAASL-------K-------------------------------------------  192 (305)
T ss_dssp             CCSS--CCTTCSEEECTTSCCCEECTGGG-------T-------------------------------------------
T ss_pred             cCcc--cCCccCEEECCCCcCCCCChhHh-------h-------------------------------------------
Confidence            2322  23556666666666554444333       0                                           


Q ss_pred             CceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhh
Q 046050          567 NTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQL  646 (779)
Q Consensus       567 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  646 (779)
                               .++.++.|++++|++++..+..+.++++|++|+|++|+|+ .+|++|.++++|+.|+|++|+|+......|
T Consensus       193 ---------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         193 ---------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             ---------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ---------ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence                     0234455555556555555555555555666666666555 345555555566666666655553322222


Q ss_pred             ------hhcccCcEEEccCCcCc
Q 046050          647 ------VELYALAIFSVAHNNLS  663 (779)
Q Consensus       647 ------~~l~~L~~L~ls~N~l~  663 (779)
                            ..+.+|+.|++++|+++
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cCcchhcccCCCCEEECCCCcCc
Confidence                  23445555555555553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.1e-23  Score=214.36  Aligned_cols=246  Identities=22%  Similarity=0.262  Sum_probs=160.3

Q ss_pred             cccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEc
Q 046050          182 QLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDV  261 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  261 (779)
                      ..+.++.++.+++ .+|..+.  +++++|++++|+++ .+|+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4566676666666 4454442  56888888888887 666555577788888888888887777777888888888888


Q ss_pred             cCCCCCcCCchhhhhcCCCCCEEEccCCcCCcccCcccccccCCccccEEEccCCcCC--ccccccccCCCCCCEEEccC
Q 046050          262 SKNFIQGHIPTGIGAFLPRLEHFNISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQ--GHIFSRSFNLTNLVTLQLDA  339 (779)
Q Consensus       262 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~  339 (779)
                      ++|+++ .+|...   .+.++.|.+.+|.+.+..+..+.   ....+..++...|...  ...+..+..+++|+.+++++
T Consensus        87 ~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~---~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          87 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             CSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHT---TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             cCCccC-cCccch---hhhhhhhhccccchhhhhhhhhh---ccccccccccccccccccCCCccccccccccCcccccc
Confidence            888877 676544   34677777777777643332221   2225566666666433  23344556677777777777


Q ss_pred             CcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCC
Q 046050          340 NQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLP  419 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  419 (779)
                      |.+. .+|..+  +++|+.|++++|.+++..+..|..++.++.|++++|.+.+..+..+.++++|++|+|++|+++...+
T Consensus       160 n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         160 TNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             SCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            7766 344332  4667777777777776666777777777777777777776666667777777777777777764433


Q ss_pred             cCcCCCcccEEEccCCcCcccc
Q 046050          420 SCFSSWLLTQVHLSRNKIEGQL  441 (779)
Q Consensus       420 ~~~~~~~L~~L~l~~n~l~~~~  441 (779)
                      ....+++|+.|++++|+|+.+.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCC
T ss_pred             ccccccCCCEEECCCCccCccC
Confidence            2223566666666666665443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-24  Score=215.44  Aligned_cols=248  Identities=20%  Similarity=0.188  Sum_probs=181.7

Q ss_pred             EEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCc
Q 046050          358 GLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNK  436 (779)
Q Consensus       358 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~  436 (779)
                      .++.++++++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|++....+..+. ...++.+..    
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~----   87 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL----   87 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC----
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccc----
Confidence            4455666665 4554432  4567777777777755555677777777777777777665555443 333333322    


Q ss_pred             CcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhh
Q 046050          437 IEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLY  516 (779)
Q Consensus       437 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  516 (779)
                                       ...+.++...+..+.++++|++|++++|.+....+..+...++|+.+++++|++++ +|+..+
T Consensus        88 -----------------~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~~~~f  149 (284)
T d1ozna_          88 -----------------SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF  149 (284)
T ss_dssp             -----------------CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             -----------------ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc-cChhHh
Confidence                             23445555667778888999999999999887777788888999999999999984 443221


Q ss_pred             hhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCc
Q 046050          517 KTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPF  596 (779)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  596 (779)
                      .                                                          ..+.++.|++++|++++..+.
T Consensus       150 ~----------------------------------------------------------~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_         150 R----------------------------------------------------------DLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             T----------------------------------------------------------TCTTCCEEECCSSCCCEECTT
T ss_pred             c----------------------------------------------------------cccchhhcccccCcccccchh
Confidence            1                                                          135688899999999988888


Q ss_pred             cccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcC-CC
Q 046050          597 QIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQF-AT  675 (779)
Q Consensus       597 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~  675 (779)
                      .|.++++|+.+++++|++++..|..|.++++|++||+++|++.+..|..|..+++|++|++++|++.|.|+.  .++ .+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~--~~l~~~  249 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA--RPLWAW  249 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG--HHHHHH
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc--hHHHHH
Confidence            999999999999999999998999999999999999999999998889999999999999999999988864  222 22


Q ss_pred             CCCCcccCCCCCCCC
Q 046050          676 FTENSYDGNSLLCGQ  690 (779)
Q Consensus       676 l~~~~~~~N~~lc~~  690 (779)
                      ++......+...|..
T Consensus       250 l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         250 LQKFRGSSSEVPCSL  264 (284)
T ss_dssp             HHHCCSEECCCBEEE
T ss_pred             HHhCcCCCCceEeCC
Confidence            333334445555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.1e-23  Score=205.88  Aligned_cols=202  Identities=23%  Similarity=0.202  Sum_probs=97.7

Q ss_pred             CCCCCCEEEccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhc--ceEEEccCccccCcCchhhhcCCCCcEEE
Q 046050          400 KLNFLTVLDLEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDI--LVTLDLSYNRFSGRIPNWIDKLSHLSYLI  477 (779)
Q Consensus       400 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  477 (779)
                      ....+.+.+.+++.++.+ |..+ .+.+++|+|++|+++++++..|...  |++|++++|+++. ++ .+..+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCee-CcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            344555666777766643 3222 1345666666666655554444433  5555555555542 22 133455555555


Q ss_pred             ccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcc
Q 046050          478 LANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRK  557 (779)
Q Consensus       478 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (779)
                      |++|++++ .+..+..+++|+.|++++|.+.+..+..+                                          
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------------------------------------  120 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL------------------------------------------  120 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT------------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeecccc------------------------------------------
Confidence            55555542 23344455555555555555442111111                                          


Q ss_pred             cceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCc
Q 046050          558 EESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNM  637 (779)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  637 (779)
                                       ..+..++.|++++|.+++..+..+..++.|+.|++++|++++..++.|..+++|++|+|++|+
T Consensus       121 -----------------~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         121 -----------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             -----------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -----------------ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC
Confidence                             002334445555555554444444445555555555555554444445555555555555555


Q ss_pred             CcCCCchhhhhcccCcEEEccCCcCcccC
Q 046050          638 LQGKIPTQLVELYALAIFSVAHNNLSGKV  666 (779)
Q Consensus       638 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  666 (779)
                      |+ .+|.++..+++|+.|+|++|++.|.|
T Consensus       184 L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         184 LY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             Cc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            54 44444444555555555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=206.46  Aligned_cols=205  Identities=22%  Similarity=0.221  Sum_probs=109.4

Q ss_pred             CCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEcc-CCCCCcCCchhhhhcCCCCCEE
Q 046050          206 ELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVS-KNFIQGHIPTGIGAFLPRLEHF  284 (779)
Q Consensus       206 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls-~n~l~~~i~~~~~~~l~~L~~L  284 (779)
                      ++++|+|++|+++ .+|...|.++++|++|++++|++..+.+..+..+..++.++.. .+.++ .++...+..+++|++|
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCEE
Confidence            4566666666665 4554444566666666666666666555555556666665544 33343 4444444445556666


Q ss_pred             EccCCcCCcccCcccccccCCccccEEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCC
Q 046050          285 NISRNVLNGSIPCSLHMTMGCFSLQILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDN  364 (779)
Q Consensus       285 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  364 (779)
                      ++++|.+....+..+.   ...+|+.+++++|.+++..+..+..+++|+.|++++|++++..+..|.++++|+++++++|
T Consensus       111 ~l~~n~~~~~~~~~~~---~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         111 HLDRCGLQELGPGLFR---GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             ECTTSCCCCCCTTTTT---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ecCCcccccccccccc---hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            6666555433332221   1224555555555555444444555555555555555555444455555555555555555


Q ss_pred             ccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCc
Q 046050          365 HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNIS  415 (779)
Q Consensus       365 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  415 (779)
                      ++++..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555555555555555555555555555555555555555555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.2e-22  Score=197.94  Aligned_cols=203  Identities=24%  Similarity=0.149  Sum_probs=159.3

Q ss_pred             cCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcCCCcccEE
Q 046050          351 LNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFSSWLLTQV  430 (779)
Q Consensus       351 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  430 (779)
                      .+...+.+++.+++.++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|+++... ....+++|   
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L---   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVL---   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTC---
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccc---
Confidence            34556777888888888 4565443  57888888888888666677888888888888888887432 22224444   


Q ss_pred             EccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 046050          431 HLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGT  510 (779)
Q Consensus       431 ~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  510 (779)
                                         ++|++++|++++ .+..+..+++|+.|++++|++.+..+..+..+.+++.|++++|.++ .
T Consensus        80 -------------------~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~  138 (266)
T d1p9ag_          80 -------------------GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T  138 (266)
T ss_dssp             -------------------CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-C
T ss_pred             -------------------cccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccc-e
Confidence                               455555555553 4556778899999999999999888888899999999999999998 4


Q ss_pred             CCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCcc
Q 046050          511 IPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKL  590 (779)
Q Consensus       511 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  590 (779)
                      +|+..+.                                                          .++.++.+++++|++
T Consensus       139 l~~~~~~----------------------------------------------------------~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_         139 LPPGLLT----------------------------------------------------------PTPKLEKLSLANNNL  160 (266)
T ss_dssp             CCTTTTT----------------------------------------------------------TCTTCCEEECTTSCC
T ss_pred             ecccccc----------------------------------------------------------ccccchhcccccccc
Confidence            4443311                                                          146788999999999


Q ss_pred             CCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcC
Q 046050          591 TGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQG  640 (779)
Q Consensus       591 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  640 (779)
                      ++..+..|..+++|+.|+|++|+|+ .+|+.+..+++|+.|+|++|++..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            9888888999999999999999999 788888899999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=7.4e-18  Score=176.42  Aligned_cols=74  Identities=28%  Similarity=0.407  Sum_probs=48.9

Q ss_pred             EEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCc
Q 046050          582 GLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNN  661 (779)
Q Consensus       582 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  661 (779)
                      ..++..+.+.+    ....+++|++|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..   +++|++|++++|+
T Consensus       268 ~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         268 YLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             EEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             ccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            34555555542    2233567888888888877 4554   3567888888888887 45543   4567888888888


Q ss_pred             CcccCCC
Q 046050          662 LSGKVPD  668 (779)
Q Consensus       662 l~~~~p~  668 (779)
                      ++ .+|.
T Consensus       336 L~-~lp~  341 (353)
T d1jl5a_         336 LR-EFPD  341 (353)
T ss_dssp             CS-SCCC
T ss_pred             CC-CCCc
Confidence            77 5665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.4e-17  Score=174.22  Aligned_cols=69  Identities=25%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             cceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEE
Q 046050          577 LKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFS  656 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  656 (779)
                      +++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|+++ .+|...   .+|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence            457888888888888 56643   577888999999988 56643   568899999999987 566532   3466655


Q ss_pred             c
Q 046050          657 V  657 (779)
Q Consensus       657 l  657 (779)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.8e-21  Score=207.23  Aligned_cols=377  Identities=17%  Similarity=0.147  Sum_probs=196.6

Q ss_pred             CCcEEeCCCCccc-------cCCCCCccEEEccccccccc----cchhhcCCCCcCEEECCCCCCcccCCcccc----c-
Q 046050           16 NLETLELRDYHLE-------LLNFTNLEVLILDGSALHIR----FLQSIAVLTSVKHLSMRNCYLYGTSDFQGL----C-   79 (779)
Q Consensus        16 ~L~~L~Ls~~~~~-------~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~-   79 (779)
                      +|++||+++++++       +..++++++|+|++|.++..    +..++..+++|++|+|++|.+... ....+    . 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~-~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH-HHHHHHHHHhc
Confidence            5677777777763       34566777777777766532    234455667777777777766311 10111    1 


Q ss_pred             CCCCCcEEEccCcccccc----cChhccCCCCCCEEeCCCCcCcccC----CchhhcCCCCCCEEEcccccccccC---C
Q 046050           80 ELVHLQELHIGYNNIGGT----LPWCLVNMTSLRILDIASNQITGNI----SSSPLRYLTSLEELRVSNNQFQIPI---S  148 (779)
Q Consensus        80 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~---~  148 (779)
                      ...+|++|+|++|+++..    ++..+..+++|++|++++|.++..-    ....................+....   .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            124577777777766543    3345566677777777777665210    1100111122233333332221000   0


Q ss_pred             cccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCC----cchhh-hCCCCCCEEEccCCCCCCcC--
Q 046050          149 FEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFT----FPRFL-YYQHELRYVDLSHMNLRGEF--  221 (779)
Q Consensus       149 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l-~~~~~L~~L~Ls~n~l~~~~--  221 (779)
                      ...+....                         .++.++++.+.....    ....+ ........+++..+.+...-  
T Consensus       162 ~~~l~~~~-------------------------~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  216 (460)
T d1z7xw1         162 ASVLRAKP-------------------------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  216 (460)
T ss_dssp             HHHHHHCT-------------------------TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             cccccccc-------------------------ccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            00111222                         444555554443211    11111 12234556666665543211  


Q ss_pred             -chhhhhcCCCCCEEECcCCccccc-----CCCCCCCCCCccEEEccCCCCCcCCchhh---hhcCCCCCEEEccCCcCC
Q 046050          222 -PNWLLENNKELETLLLANNSLSGF-----FQMPVNPLKQLTTIDVSKNFIQGHIPTGI---GAFLPRLEHFNISRNVLN  292 (779)
Q Consensus       222 -~~~~~~~~~~L~~L~L~~n~~~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~---~~~l~~L~~L~l~~n~l~  292 (779)
                       ........+.++.+.+.+|.+...     ..........++.+++++|.+........   ....+.++.+++++|.+.
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             011123456667777776664321     12223445667777777776652211111   122567777777777765


Q ss_pred             cccCccc--ccccCCccccEEEccCCcCCcccccc----ccCCCCCCEEEccCCcCccc----cCcccc-CCCCCCEEEc
Q 046050          293 GSIPCSL--HMTMGCFSLQILALSNNSLQGHIFSR----SFNLTNLVTLQLDANQFTGG----IPENLL-NCSLLGGLYL  361 (779)
Q Consensus       293 ~~~~~~~--~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~L  361 (779)
                      ......+  ........|+.++++++.++......    +...++|++|++++|++++.    +++.+. ..+.|++|++
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence            3222222  11122336778888887776543332    23456788888888887642    222332 4566888888


Q ss_pred             cCCccCCC----cchhhhCCCCCceEEccCCCCCCCcchhh----c-CCCCCCEEEccCccCcccC
Q 046050          362 SDNHISGK----IPKWLGNLSNLVDIIMPNNHLEGPIPANL----C-KLNFLTVLDLEVNNISGSL  418 (779)
Q Consensus       362 ~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~  418 (779)
                      ++|.++..    ++..+..+++|++|++++|+++......+    . +...|+.|++.+|.+....
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            88888742    34456667888888888888875433322    2 3446888888888776433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-20  Score=202.20  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             cccEEECCCCcCCCC-cchhhhCCCCCCEEEccCCCCCCc----CchhhhhcCCCCCEEECcCCcccccC----CCCCC-
Q 046050          182 QLQNISLSGCRCDFT-FPRFLYYQHELRYVDLSHMNLRGE----FPNWLLENNKELETLLLANNSLSGFF----QMPVN-  251 (779)
Q Consensus       182 ~L~~L~L~~n~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~-  251 (779)
                      +|++|+++.+++++. +...+..++++++|+|++|.++..    +... ++.+++|++|+|++|+++...    ...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~-L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHH-HhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            577777777777653 234455567777777777776632    1222 356667777777777664211    11121 


Q ss_pred             CCCCccEEEccCCCCCcCCchhh---hhcCCCCCEEEccCCcCC
Q 046050          252 PLKQLTTIDVSKNFIQGHIPTGI---GAFLPRLEHFNISRNVLN  292 (779)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~~i~~~~---~~~l~~L~~L~l~~n~l~  292 (779)
                      ...+|++|++++|.+++..-..+   ...+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23456666666666652211111   122456666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.8e-18  Score=163.32  Aligned_cols=181  Identities=23%  Similarity=0.265  Sum_probs=133.5

Q ss_pred             eEEEccCccccCcCchhhhcCCCCcEEEccCCcCcc-cCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCC
Q 046050          450 VTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEG-EVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSA  528 (779)
Q Consensus       450 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~  528 (779)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++ ..+..|.++++|+.|++++|++.+..+..+             
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~-------------   74 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-------------   74 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-------------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc-------------
Confidence            45666777776 4554442  578888888888875 446667888888888888888875444433             


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEE
Q 046050          529 APTSEGNYGASSPAAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALN  608 (779)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  608 (779)
                                                                    ..++.|++|+|++|+|++..|..|.++++|++|+
T Consensus        75 ----------------------------------------------~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          75 ----------------------------------------------EGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             ----------------------------------------------TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             ----------------------------------------------ccccccceeeeccccccccCHHHHhCCCcccccc
Confidence                                                          1145678888888888877788899999999999


Q ss_pred             cCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcccCCCCCCcCCCCCCCcccCCCCCC
Q 046050          609 LSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSGKVPDRVGQFATFTENSYDGNSLLC  688 (779)
Q Consensus       609 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc  688 (779)
                      |++|+|++..|++|..+++|++|+|++|++.+..+.. .-...++.+.+..|.++|..|..   +..+...++..|...|
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcC
Confidence            9999999888899999999999999999998544332 22235677788889999888864   4555566788888888


Q ss_pred             CCCCCCCC
Q 046050          689 GQPLSESC  696 (779)
Q Consensus       689 ~~~l~~~c  696 (779)
                      .++-...|
T Consensus       185 ~~~~~~g~  192 (192)
T d1w8aa_         185 SSENSEGC  192 (192)
T ss_dssp             CCC---CC
T ss_pred             CCCCCCCC
Confidence            77655444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.8e-17  Score=159.00  Aligned_cols=97  Identities=26%  Similarity=0.384  Sum_probs=49.2

Q ss_pred             EEEccCCcCCccccccccCCCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCC
Q 046050          310 ILALSNNSLQGHIFSRSFNLTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNH  389 (779)
Q Consensus       310 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  389 (779)
                      .++++.+++++..  ....+.+|+.|++.+|.++. + +.+.++++|++|++++|++++..|  +..+++++++++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3445555555432  23345566666666666652 2 235556666666666666554322  5555555555555555


Q ss_pred             CCCCcchhhcCCCCCCEEEccCccC
Q 046050          390 LEGPIPANLCKLNFLTVLDLEVNNI  414 (779)
Q Consensus       390 l~~~~~~~~~~l~~L~~L~L~~n~l  414 (779)
                      ++. ++ .+..+++|+.++++++..
T Consensus        97 ~~~-i~-~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          97 LKN-VS-AIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             CSC-CG-GGTTCTTCCEEECTTSCC
T ss_pred             ccc-cc-cccccccccccccccccc
Confidence            542 21 244455555555544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.4e-17  Score=157.85  Aligned_cols=188  Identities=22%  Similarity=0.278  Sum_probs=92.7

Q ss_pred             cCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCC
Q 046050           54 AVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSL  133 (779)
Q Consensus        54 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L  133 (779)
                      +.+.+|++|++.+|.+.. ++  .+..+++|++|++++|.+++..  .+.++++|+++++++|.++ .++.  +.++++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~--~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSA--IAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGG--GTTCTTC
T ss_pred             HHcCCcCEEECCCCCCCc-ch--hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cccc--ccccccc
Confidence            344455555555555532 22  3455555555555555554322  2455555555555555554 4432  4455555


Q ss_pred             CEEEcccccccccCCcccccCCCCCcEEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEcc
Q 046050          134 EELRVSNNQFQIPISFEPFFNHSKLKKFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLS  213 (779)
Q Consensus       134 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls  213 (779)
                      ++++++++...+.   ..+...+                         .++.+.++++.+...  ..+..+++|++|+++
T Consensus       110 ~~l~l~~~~~~~~---~~~~~~~-------------------------~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2         110 KTLDLTSTQITDV---TPLAGLS-------------------------NLQVLYLDLNQITNI--SPLAGLTNLQYLSIG  159 (227)
T ss_dssp             CEEECTTSCCCCC---GGGTTCT-------------------------TCCEEECCSSCCCCC--GGGGGCTTCCEEECC
T ss_pred             ccccccccccccc---chhcccc-------------------------chhhhhchhhhhchh--hhhcccccccccccc
Confidence            5555555544321   1122223                         344444444443322  223445556666666


Q ss_pred             CCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEEEcc
Q 046050          214 HMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHFNIS  287 (779)
Q Consensus       214 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~  287 (779)
                      +|.+. ..+.  ++++++|++|++++|+++++.  .+..+++|++|++++|+++ .++. +. .+++|+.|+++
T Consensus       160 ~n~~~-~~~~--l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt-~i~~-l~-~l~~L~~L~ls  225 (227)
T d1h6ua2         160 NAQVS-DLTP--LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVSP-LA-NTSNLFIVTLT  225 (227)
T ss_dssp             SSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC-BCGG-GT-TCTTCCEEEEE
T ss_pred             ccccc-cchh--hcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCC-CCcc-cc-cCCCCCEEEee
Confidence            66554 2222  345566666666666655432  2555666666666666665 4442 22 25666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=160.32  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=54.1

Q ss_pred             cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccc-cChhccCCCCCCEEeCC
Q 046050           36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGT-LPWCLVNMTSLRILDIA  114 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls  114 (779)
                      ++++.++..++ .+|..+.  +++++|++++|.+. .++...|.++++|++|++++|.+... .+.+|.++++++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34555555554 2333221  35666666666654 23323455566666666666655443 23345566666666554


Q ss_pred             C-CcCcccCCchhhcCCCCCCEEEccccccc
Q 046050          115 S-NQITGNISSSPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       115 ~-n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~  144 (779)
                      . |.+. .++...|..+++|+++++++|.++
T Consensus        87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLL-YINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCC-EECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccc-ccccccccccccccccccchhhhc
Confidence            2 4444 334335566666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.4e-17  Score=153.67  Aligned_cols=116  Identities=23%  Similarity=0.267  Sum_probs=102.4

Q ss_pred             cceeeEEeccCCccCCCC-CccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEE
Q 046050          577 LKIMFGLDLSCNKLTGEI-PFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIF  655 (779)
Q Consensus       577 l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  655 (779)
                      ++.+++|+|++|+|++.+ +..|.++++|+.|+|++|++++..++.|..+++|++|+|++|+|++..|.+|.++++|++|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            356788999999998644 6677889999999999999998889999999999999999999998888889999999999


Q ss_pred             EccCCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          656 SVAHNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       656 ~ls~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      +|++|+|++..|.+|..+..++.+.+.+|++.|.+..
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999999988888888888999999999999998754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=156.64  Aligned_cols=196  Identities=17%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             CCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEccc-ccccccCCcccccCCCCCcEE
Q 046050           83 HLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSN-NQFQIPISFEPFFNHSKLKKF  161 (779)
Q Consensus        83 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L  161 (779)
                      ++++|++++|+|+...+.+|.++++|++|++++|.+...++...|..+++++++++.. |.+. ..+...+.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-cccccccccccccccc
Confidence            4444444444444333334444444444444444444333333444444444444432 2222 2222334444444444


Q ss_pred             ECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCC-CCCEEEccCCCCCCcCchhhhhcCCCCCEE-ECcC
Q 046050          162 YGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQH-ELRYVDLSHMNLRGEFPNWLLENNKELETL-LLAN  239 (779)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L-~L~~  239 (779)
                      ++.++.+...........+..+..+...++.+....+..+..++ .++.|++++|+++ .++...+ ..++++++ .+++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTT-TTCCEEEEECTTC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccc-cchhhhccccccc
Confidence            44444433211111222222333333344343333333333332 4555555555555 4444333 22333333 3455


Q ss_pred             CcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCC
Q 046050          240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLE  282 (779)
Q Consensus       240 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  282 (779)
                      |+++.+.+..|.++++|++|++++|+++ .+|...+..+++|+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  228 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccc
Confidence            5555544445556666666666666665 55554433333333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=9.2e-16  Score=145.40  Aligned_cols=162  Identities=23%  Similarity=0.344  Sum_probs=85.6

Q ss_pred             CCCCCcEEEccCcccccccChhccCCCCCCEEeCCCCcCcccCCchhhcCCCCCCEEEcccccccccCCcccccCCCCCc
Q 046050           80 ELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIASNQITGNISSSPLRYLTSLEELRVSNNQFQIPISFEPFFNHSKLK  159 (779)
Q Consensus        80 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  159 (779)
                      .+.++++|++++|.|+..  +.++.+++|++|++++|+++ .+++  ++++++|++|++++|.+.. ++  .+.+++   
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~-~~--~l~~l~---  106 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD-IT--PLANLT---  106 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCT---
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccc-cc--cccccc---
Confidence            345555555555555531  23555556666666666555 3332  5555556666665555431 11  122222   


Q ss_pred             EEECcCCceeeecccCCCCCCccccEEECCCCcCCCCcchhhhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcC
Q 046050          160 KFYGQKNRLFVEIESHSLTPKFQLQNISLSGCRCDFTFPRFLYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLAN  239 (779)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~  239 (779)
                                            +|+.|++++|....  ...+..+++|+.|++++|++. .++.  +..++++++|++.+
T Consensus       107 ----------------------~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~  159 (199)
T d2omxa2         107 ----------------------NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSS  159 (199)
T ss_dssp             ----------------------TCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCS
T ss_pred             ----------------------cccccccccccccc--ccccchhhhhHHhhhhhhhhc-cccc--cccccccccccccc
Confidence                                  22333333332221  123455666777777776665 4443  35666777777777


Q ss_pred             CcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCCCCEE
Q 046050          240 NSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPRLEHF  284 (779)
Q Consensus       240 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  284 (779)
                      |++++..  .++.+++|++|++++|+++ .++. +.. +++|++|
T Consensus       160 n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~-l~~-L~~L~~L  199 (199)
T d2omxa2         160 NQVTDLK--PLANLTTLERLDISSNKVS-DISV-LAK-LTNLESL  199 (199)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCSEE
T ss_pred             ccccCCc--cccCCCCCCEEECCCCCCC-CCcc-ccC-CCCCCcC
Confidence            7666542  3666777777777777776 4542 333 5666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.1e-16  Score=147.49  Aligned_cols=79  Identities=24%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             hhCCCCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCCCCCcCCchhhhhcCCC
Q 046050          201 LYYQHELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKNFIQGHIPTGIGAFLPR  280 (779)
Q Consensus       201 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  280 (779)
                      +..+++++.+++++|.++ ..+.  +..+++|+++++++|+++++.  .+..+++|++|++++|+++ .++. +.. +++
T Consensus       130 l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~~-l~~-l~~  201 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-DLRA-LAG-LKN  201 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-BCGG-GTT-CTT
T ss_pred             cccccccccccccccccc-cccc--ccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-CChh-hcC-CCC
Confidence            334444455555555444 2221  234455555555555554322  2445555555555555554 3432 222 455


Q ss_pred             CCEEEcc
Q 046050          281 LEHFNIS  287 (779)
Q Consensus       281 L~~L~l~  287 (779)
                      |++|+++
T Consensus       202 L~~L~Ls  208 (210)
T d1h6ta2         202 LDVLELF  208 (210)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEcc
Confidence            5555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=145.91  Aligned_cols=164  Identities=24%  Similarity=0.244  Sum_probs=92.6

Q ss_pred             CCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEc
Q 046050          330 TNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDL  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  409 (779)
                      .+|++|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            3444555555544421 1 2444555555555555554322  13445555555555555542 22 3445555555555


Q ss_pred             cCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCcc
Q 046050          410 EVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVPV  489 (779)
Q Consensus       410 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  489 (779)
                      ++|.+.. ++....++.++.+++++|.+++.........|+.+++++|++++. + .+.++++|++|++++|++++ ++ 
T Consensus       120 ~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-  194 (210)
T d1h6ta2         120 EHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-  194 (210)
T ss_dssp             TTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-
Confidence            5555442 222223445555555555555443322223377777777777753 3 37889999999999999984 44 


Q ss_pred             cccCCCCCCEEEccC
Q 046050          490 QLCLLKQLQLIDLSH  504 (779)
Q Consensus       490 ~~~~l~~L~~L~Ls~  504 (779)
                      .+.++++|++|+|++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.5e-15  Score=139.95  Aligned_cols=161  Identities=27%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             CCCCCEEEccCCcCccccCccccCCCCCCEEEccCCccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEE
Q 046050          329 LTNLVTLQLDANQFTGGIPENLLNCSLLGGLYLSDNHISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLD  408 (779)
Q Consensus       329 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  408 (779)
                      ++++++|++++|.+.. + +.+..+++|++|++++|++++..+  ++++++|++|++++|.+... + .+.+++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccc
Confidence            3444444444444442 1 123444445555555554443221  44445555555555444421 1 244445555555


Q ss_pred             ccCccCcccCCcCcCCCcccEEEccCCcCcccchhhHhhcceEEEccCccccCcCchhhhcCCCCcEEEccCCcCcccCc
Q 046050          409 LEVNNISGSLPSCFSSWLLTQVHLSRNKIEGQLEDVFGDILVTLDLSYNRFSGRIPNWIDKLSHLSYLILANNNLEGEVP  488 (779)
Q Consensus       409 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  488 (779)
                      +++|.+... +....+++|+.+++++|++.....-.....++.|++++|++++. + .++++++|++|++++|++++. +
T Consensus       113 l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~  188 (199)
T d2omxa2         113 LFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S  188 (199)
T ss_dssp             CCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G
T ss_pred             ccccccccc-cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-c
Confidence            554444421 12222444445555444444332111111255566666665543 2 367778888888888887743 3


Q ss_pred             ccccCCCCCCEE
Q 046050          489 VQLCLLKQLQLI  500 (779)
Q Consensus       489 ~~~~~l~~L~~L  500 (779)
                       .++.+++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             46777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-15  Score=149.36  Aligned_cols=60  Identities=25%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             CccccEEEccCC-cCCccccccccCCCCCCEEEccCC-cCccccCccccCCCCCCEEEccCC
Q 046050          305 CFSLQILALSNN-SLQGHIFSRSFNLTNLVTLQLDAN-QFTGGIPENLLNCSLLGGLYLSDN  364 (779)
Q Consensus       305 ~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n  364 (779)
                      |++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|++|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            344555555543 244344444445555555555553 343333333444555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=151.52  Aligned_cols=212  Identities=17%  Similarity=0.130  Sum_probs=123.7

Q ss_pred             CCCCEEEccCCCCCCcCchhhhhcCCCCCEEECcCCcccccCCCCCCCCCCccEEEccCC-CCCcCCchhhhhcCCCCCE
Q 046050          205 HELRYVDLSHMNLRGEFPNWLLENNKELETLLLANNSLSGFFQMPVNPLKQLTTIDVSKN-FIQGHIPTGIGAFLPRLEH  283 (779)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~  283 (779)
                      .+|++||++++.++......++..+++|++|+++++.+.+.....+..+++|++|+++++ .+++..-..+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            467777777766654444445566777777777777666554555666777777777774 4442211223344678888


Q ss_pred             EEccCCc-CCcccCcccccccCCccccEEEccCC--cCCcc-ccccccCCCCCCEEEccCC-cCccccCccccCCCCCCE
Q 046050          284 FNISRNV-LNGSIPCSLHMTMGCFSLQILALSNN--SLQGH-IFSRSFNLTNLVTLQLDAN-QFTGGIPENLLNCSLLGG  358 (779)
Q Consensus       284 L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~ls~n--~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  358 (779)
                      |++++|. ++...... .....+++|+.|+++++  .++.. +......+++|++|++++| .+++.....+.++++|++
T Consensus       126 L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         126 LNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cccccccccccccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            8888763 32111000 11122346778887765  34322 2223346788888888876 466555666777788888


Q ss_pred             EEccCC-ccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCc
Q 046050          359 LYLSDN-HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPS  420 (779)
Q Consensus       359 L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  420 (779)
                      |++++| .+++.....++++++|+.|+++++--.+..+.....+|+|+   +..++++...+.
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~  264 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARP  264 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCC
Confidence            888874 56655555677778888888877722222232223455544   455556544433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=3.2e-14  Score=147.51  Aligned_cols=86  Identities=22%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             eeeEEeccCCccCCC----CCccccCcccCcEEEcCCCcCCccCch----hhhC--CCCCCEEECCCCcCcCC----Cch
Q 046050          579 IMFGLDLSCNKLTGE----IPFQIGYLNMIRALNLSHNNLMGTIPS----TFSH--LSQIESLDLSYNMLQGK----IPT  644 (779)
Q Consensus       579 ~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~--l~~L~~L~Ls~N~l~~~----~p~  644 (779)
                      .|+.|++++|.++..    +...+...++|++|+|++|.|++.-..    .+..  .+.|++||+++|+|+..    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            344455555544321    233455567777777777777644222    2322  35677788888777642    223


Q ss_pred             hhh-hcccCcEEEccCCcCcc
Q 046050          645 QLV-ELYALAIFSVAHNNLSG  664 (779)
Q Consensus       645 ~l~-~l~~L~~L~ls~N~l~~  664 (779)
                      .+. +.+.|++|++++|++..
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            332 45677888888887753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.3e-13  Score=115.86  Aligned_cols=82  Identities=28%  Similarity=0.381  Sum_probs=39.0

Q ss_pred             eeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCchhhhCCCCCCEEECCCCcCcCCC-chhhhhcccCcEEEc
Q 046050          579 IMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIPSTFSHLSQIESLDLSYNMLQGKI-PTQLVELYALAIFSV  657 (779)
Q Consensus       579 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l  657 (779)
                      .|++||+++|+|+ .+|..++.+++|+.|++++|.|++ +| .++.+++|+.|++++|+++... +..+..+++|++|++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            3444444444444 334444445555555555555542 22 2455555555555555554322 134445555555555


Q ss_pred             cCCcCc
Q 046050          658 AHNNLS  663 (779)
Q Consensus       658 s~N~l~  663 (779)
                      ++|+++
T Consensus        98 ~~N~i~  103 (124)
T d1dcea3          98 QGNSLC  103 (124)
T ss_dssp             TTSGGG
T ss_pred             CCCcCC
Confidence            555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.3e-14  Score=126.50  Aligned_cols=129  Identities=18%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             cCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCC
Q 046050           29 LLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSL  108 (779)
Q Consensus        29 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  108 (779)
                      +.+..++++|+|++|+++.+ +..+..+++|++|++++|.+.. ++  .+..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC--CcccCcchhhhhcccccccCCCcccccccccc
Confidence            45666777777777777654 4455667788888888887753 33  47778888888888888876656666778888


Q ss_pred             CEEeCCCCcCcccCCc-hhhcCCCCCCEEEcccccccccCC--cccccCCCCCcEEE
Q 046050          109 RILDIASNQITGNISS-SPLRYLTSLEELRVSNNQFQIPIS--FEPFFNHSKLKKFY  162 (779)
Q Consensus       109 ~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~  162 (779)
                      ++|++++|+++ .++. ..+..+++|++|++++|.++....  ...+..+++|+.|+
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888888877 5543 356777888888888887763211  12345566666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.9e-14  Score=125.92  Aligned_cols=128  Identities=16%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             hhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 046050          467 IDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSPAAGEA  546 (779)
Q Consensus       467 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (779)
                      +.+...+++|+|++|+|+. ++..+..+++|+.|++++|+++ .++. +                               
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~~-~-------------------------------   59 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDG-F-------------------------------   59 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EECC-C-------------------------------
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccCC-c-------------------------------
Confidence            4456677777777777774 3555566777777777777776 2221 1                               


Q ss_pred             cCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCc-hhhhCC
Q 046050          547 VSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP-STFSHL  625 (779)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l  625 (779)
                                                  ..+++|++|++++|++++..+..+..+++|+.|++++|+++.... ..+..+
T Consensus        60 ----------------------------~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l  111 (162)
T d1a9na_          60 ----------------------------PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL  111 (162)
T ss_dssp             ----------------------------CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred             ----------------------------ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccc
Confidence                                        014566677777777764444445667777777777777764322 456777


Q ss_pred             CCCCEEECCCCcCcCCC---chhhhhcccCcEEE
Q 046050          626 SQIESLDLSYNMLQGKI---PTQLVELYALAIFS  656 (779)
Q Consensus       626 ~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  656 (779)
                      ++|++|++++|+++...   +..++.+++|++||
T Consensus       112 ~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777777776332   13466777777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.4e-13  Score=115.08  Aligned_cols=102  Identities=23%  Similarity=0.257  Sum_probs=63.9

Q ss_pred             cEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCcccccCCCCCcEEEccCcccccccChhccCCCCCCEEeCCC
Q 046050           36 EVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDFQGLCELVHLQELHIGYNNIGGTLPWCLVNMTSLRILDIAS  115 (779)
Q Consensus        36 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  115 (779)
                      |+|+|++|+++.. + .+..+++|++|++++|.+. .+|. .++.+++|++|++++|.|++. | .++++++|++|++++
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchh-hhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            4667777776633 2 3666667777777777664 3442 466677777777777776642 2 366677777777777


Q ss_pred             CcCcccCCc-hhhcCCCCCCEEEccccccc
Q 046050          116 NQITGNISS-SPLRYLTSLEELRVSNNQFQ  144 (779)
Q Consensus       116 n~i~~~i~~-~~~~~l~~L~~L~Ls~n~l~  144 (779)
                      |+|+ .++. ..+..+++|++|++++|+++
T Consensus        75 N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            7766 4442 34566666777777776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=6e-14  Score=145.44  Aligned_cols=63  Identities=14%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             ceeeEEeccCCccCCCCCc----ccc--CcccCcEEEcCCCcCCcc----Cchhhh-CCCCCCEEECCCCcCcC
Q 046050          578 KIMFGLDLSCNKLTGEIPF----QIG--YLNMIRALNLSHNNLMGT----IPSTFS-HLSQIESLDLSYNMLQG  640 (779)
Q Consensus       578 ~~L~~LdLs~N~l~~~~p~----~l~--~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~  640 (779)
                      +.|++|+|++|.+++....    .+.  ..+.|+.|++++|+|+..    +...+. +.++|+.|+|++|++..
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            3455555555555432111    122  135688888888888643    233342 57889999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.4e-13  Score=120.39  Aligned_cols=111  Identities=17%  Similarity=0.152  Sum_probs=92.2

Q ss_pred             eeEEeccCCccCCCCCccccCcccCcEEEcCCC-cCCccCchhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEcc
Q 046050          580 MFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHN-NLMGTIPSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVA  658 (779)
Q Consensus       580 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  658 (779)
                      .+.+++++++++ ..|..+..+++|+.|++++| .++...+++|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345888888888 67888889999999999766 4887777889999999999999999998888899999999999999


Q ss_pred             CCcCcccCCCCCCcCCCCCCCcccCCCCCCCCCC
Q 046050          659 HNNLSGKVPDRVGQFATFTENSYDGNSLLCGQPL  692 (779)
Q Consensus       659 ~N~l~~~~p~~~~~~~~l~~~~~~~N~~lc~~~l  692 (779)
                      +|+++...+..+ +...+..+.++|||+.|+|.+
T Consensus        89 ~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            999984444433 444678888999999998854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=9.5e-14  Score=130.48  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=92.5

Q ss_pred             cCchhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCcccCCchhhhhccCCCCCCCCCCCCCCCCCCCCc
Q 046050          462 RIPNWIDKLSHLSYLILANNNLEGEVPVQLCLLKQLQLIDLSHNNLSGTIPSCLYKTALGEGNYDSAAPTSEGNYGASSP  541 (779)
Q Consensus       462 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  541 (779)
                      .++..+..+++|++|+|++|+|+.. + .+..+++|+.|++++|+++ .+|...                          
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~--------------------------   89 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD--------------------------   89 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH--------------------------
T ss_pred             hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc--------------------------
Confidence            4556788888888888888888743 3 4778888888888888886 454332                          


Q ss_pred             ccccccCCCCCCCCcccceEEEEEcCceeeecccccceeeEEeccCCccCCCCCccccCcccCcEEEcCCCcCCccCc-h
Q 046050          542 AAGEAVSPSGSSTMRKEESVEFRTKNTSYYYQGRILKIMFGLDLSCNKLTGEIPFQIGYLNMIRALNLSHNNLMGTIP-S  620 (779)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~  620 (779)
                                                       ..++.|+.|++++|+++. + ..+..+++|+.|++++|+++.... .
T Consensus        90 ---------------------------------~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~  134 (198)
T d1m9la_          90 ---------------------------------AVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEID  134 (198)
T ss_dssp             ---------------------------------HHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHH
T ss_pred             ---------------------------------cccccccccccccccccc-c-ccccccccccccccccchhccccccc
Confidence                                             113567788888888873 3 346777888888888888874322 4


Q ss_pred             hhhCCCCCCEEECCCCcCcCCCchh----------hhhcccCcEEE
Q 046050          621 TFSHLSQIESLDLSYNMLQGKIPTQ----------LVELYALAIFS  656 (779)
Q Consensus       621 ~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  656 (779)
                      .+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       135 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6778888888888888776443321          55677777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.1e-11  Score=105.27  Aligned_cols=106  Identities=18%  Similarity=0.159  Sum_probs=74.9

Q ss_pred             CCEEEccCCcCccccCccccCCCCCCEEEccCC-ccCCCcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 046050          332 LVTLQLDANQFTGGIPENLLNCSLLGGLYLSDN-HISGKIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLE  410 (779)
Q Consensus       332 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  410 (779)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+++...+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345666666665 45566666777777777655 3665555667777777777777777776667777777888888888


Q ss_pred             CccCcccCCcCcCCCcccEEEccCCcCc
Q 046050          411 VNNISGSLPSCFSSWLLTQVHLSRNKIE  438 (779)
Q Consensus       411 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~  438 (779)
                      +|+++...+..+....|+.|++++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            8887766666666666777777777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2e-12  Score=121.29  Aligned_cols=135  Identities=22%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             CcchhhhCCCCCceEEccCCCCCCCcchhhcCCCCCCEEEccCccCcccCCcCcC-CCcccEEEccCCcCcccchhhHhh
Q 046050          369 KIPKWLGNLSNLVDIIMPNNHLEGPIPANLCKLNFLTVLDLEVNNISGSLPSCFS-SWLLTQVHLSRNKIEGQLEDVFGD  447 (779)
Q Consensus       369 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~  447 (779)
                      .++..+..+++|++|++++|+++. ++ .+..+++|+.|++++|.++. ++..+. .+.|+.|++++|+++...+..-..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~  115 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHHHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccccccccccccccccccccccccccc
Confidence            345566677777777777777763 33 36677777777777777763 333333 456788888888777653322223


Q ss_pred             cceEEEccCccccCcCc-hhhhcCCCCcEEEccCCcCcccCccc----------ccCCCCCCEEEccCCcCc
Q 046050          448 ILVTLDLSYNRFSGRIP-NWIDKLSHLSYLILANNNLEGEVPVQ----------LCLLKQLQLIDLSHNNLS  508 (779)
Q Consensus       448 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~  508 (779)
                      .|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||  +..++
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            38888888888875422 46788999999999999886544322          56788999886  44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.4e-08  Score=89.52  Aligned_cols=121  Identities=16%  Similarity=0.127  Sum_probs=70.2

Q ss_pred             CCcEEeCCCCcc--ccCCCCCccEEEccccccccccchhhcCCCCcCEEECCCCCCcccCCc-ccccCCCCCcEEEccCc
Q 046050           16 NLETLELRDYHL--ELLNFTNLEVLILDGSALHIRFLQSIAVLTSVKHLSMRNCYLYGTSDF-QGLCELVHLQELHIGYN   92 (779)
Q Consensus        16 ~L~~L~Ls~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n   92 (779)
                      ..+.||++....  .+..+..+..++...+... .....+..+++|++|+|++|+++...+. ..+..+++|++|+|++|
T Consensus        23 ~~~~Ldls~l~~~~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          23 SQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             SSCCBCCCCCSSCTTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             hhCeeecccCCCCchhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC
Confidence            466677776653  2333334444444333322 3334445677888888888887543221 23456777888888888


Q ss_pred             ccccccChhccCCCCCCEEeCCCCcCcccCCc------hhhcCCCCCCEEE
Q 046050           93 NIGGTLPWCLVNMTSLRILDIASNQITGNISS------SPLRYLTSLEELR  137 (779)
Q Consensus        93 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~------~~~~~l~~L~~L~  137 (779)
                      .|+...+-.+.+..+|+.|++++|.+......      ..+..+|+|+.||
T Consensus       102 ~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         102 ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            77754443444455677788888877643322      1245667777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.9e-07  Score=82.17  Aligned_cols=65  Identities=25%  Similarity=0.231  Sum_probs=28.5

Q ss_pred             CcccCcEEEcCCCcCCccC--chhhhCCCCCCEEECCCCcCcCCCchhhhhcccCcEEEccCCcCcc
Q 046050          600 YLNMIRALNLSHNNLMGTI--PSTFSHLSQIESLDLSYNMLQGKIPTQLVELYALAIFSVAHNNLSG  664 (779)
Q Consensus       600 ~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  664 (779)
                      .+++|++|+||+|+|+...  +..+..+++|+.|||++|+++...+-.+.....|+.|++++|++++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3444444555555444321  2334444555555555555543222222223344555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=2.4e-06  Score=76.43  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             ccccchhhhhCCCCCCcEEeCCCC-ccc----------cCCCCCccEEEcccccccccc----chhhcCCCCcCEEECCC
Q 046050            2 NVSSLLQSLWTPFPNLETLELRDY-HLE----------LLNFTNLEVLILDGSALHIRF----LQSIAVLTSVKHLSMRN   66 (779)
Q Consensus         2 ~~~~~~~~~~~~~~~L~~L~Ls~~-~~~----------~~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~L~~   66 (779)
                      +|.+.+..+..+.+.|++|+|+++ .++          +...++|++|+|++|.+....    ..++...+.|++|+|++
T Consensus         2 dv~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           2 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             CHHHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeeh
Confidence            455667777777788888888764 331          334455666666665554211    12333344555555555


Q ss_pred             CCC
Q 046050           67 CYL   69 (779)
Q Consensus        67 n~l   69 (779)
                      |.+
T Consensus        82 n~i   84 (167)
T d1pgva_          82 NFL   84 (167)
T ss_dssp             SBC
T ss_pred             hhc
Confidence            544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=1.1e-05  Score=71.98  Aligned_cols=116  Identities=20%  Similarity=0.260  Sum_probs=67.3

Q ss_pred             ccccchhhhhCCCCCCcEEeCCCC-cc----------ccCCCCCccEEEcccccccccc----chhhcCCCCcCEEECCC
Q 046050            2 NVSSLLQSLWTPFPNLETLELRDY-HL----------ELLNFTNLEVLILDGSALHIRF----LQSIAVLTSVKHLSMRN   66 (779)
Q Consensus         2 ~~~~~~~~~~~~~~~L~~L~Ls~~-~~----------~~~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~L~~   66 (779)
                      +|.+.+..+..+.|.|++|+|+++ .+          .+...++|++|++++|.+....    ..++...+.++.+++++
T Consensus         4 ~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_           4 DVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             CHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             cHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcc
Confidence            566777888888889999988873 44          2446677777777777765432    23445566777777777


Q ss_pred             CCCcccCC---cccccCCCCCcEEEc--cCccccc----ccChhccCCCCCCEEeCCCCc
Q 046050           67 CYLYGTSD---FQGLCELVHLQELHI--GYNNIGG----TLPWCLVNMTSLRILDIASNQ  117 (779)
Q Consensus        67 n~l~~~~~---~~~~~~l~~L~~L~L--s~n~i~~----~~~~~~~~l~~L~~L~Ls~n~  117 (779)
                      |.+.....   .+.+...+.|+.++|  ++|.+..    .+...+...++|++|+++.+.
T Consensus        84 ~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          84 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            76532210   123444555655443  3444433    233344455566666655443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=3.6e-05  Score=68.49  Aligned_cols=112  Identities=11%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             CCCCccEEEcccc-ccccc----cchhhcCCCCcCEEECCCCCCccc--CC-cccccCCCCCcEEEccCcccccc----c
Q 046050           31 NFTNLEVLILDGS-ALHIR----FLQSIAVLTSVKHLSMRNCYLYGT--SD-FQGLCELVHLQELHIGYNNIGGT----L   98 (779)
Q Consensus        31 ~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~~l~~L~~L~Ls~n~i~~~----~   98 (779)
                      +.++|+.|+|+++ .++..    +..++...++|++|+|++|.+...  .. .+.+...+.|++|++++|.|+..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4577888888864 35432    234566777888888888877421  11 12344567788888888887753    3


Q ss_pred             ChhccCCCCCCEEeCCCCcCcccCCc-------hhhcCCCCCCEEEcccccc
Q 046050           99 PWCLVNMTSLRILDIASNQITGNISS-------SPLRYLTSLEELRVSNNQF  143 (779)
Q Consensus        99 ~~~~~~l~~L~~L~Ls~n~i~~~i~~-------~~~~~l~~L~~L~Ls~n~l  143 (779)
                      ..++...+.|++|++++|.+. .+..       ..+...+.|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            345666777888888877654 2221       1334457777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00015  Score=64.38  Aligned_cols=111  Identities=24%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             CCCCccEEEccc-cccccc----cchhhcCCCCcCEEECCCCCCcccCC---cccccCCCCCcEEEccCcccccc----c
Q 046050           31 NFTNLEVLILDG-SALHIR----FLQSIAVLTSVKHLSMRNCYLYGTSD---FQGLCELVHLQELHIGYNNIGGT----L   98 (779)
Q Consensus        31 ~l~~L~~L~L~~-~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~   98 (779)
                      +.++|++|++++ +.++..    +..++...++|++|++++|.+.....   .+.+...+.++.+++++|.++..    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456677777765 334321    23445566667777777766532211   01233456666666666665432    2


Q ss_pred             ChhccCCCCCCEEeC--CCCcCcc----cCCchhhcCCCCCCEEEccccc
Q 046050           99 PWCLVNMTSLRILDI--ASNQITG----NISSSPLRYLTSLEELRVSNNQ  142 (779)
Q Consensus        99 ~~~~~~l~~L~~L~L--s~n~i~~----~i~~~~~~~l~~L~~L~Ls~n~  142 (779)
                      ..++...++|+.++|  ++|.+..    .+.. .+...++|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCC
Confidence            234555666665444  3444432    1222 33445666666665543