Citrus Sinensis ID: 046055

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MTFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccccccccccccccccccccHHccccccccEEEccccccEEcccHHccccccccEEEEcccEEEEEccHHHHcccccccccccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccHHccccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHcccccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHHcccccccEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEccccccccccHHHHHccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccEEEccccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEcccccccccccccHHHHccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mtfdnwsslskpkmslkvlnisgngfqdyfpgqivvGMTELEVLDAfnnnftgplpVEIVSLKnlkhlsfggnyfsgeipesysEIQSLEYlglngiglngtAPVFLSLLKNLREMYIGYFntytggippefgtlsklrvldmascnisgeipasLSQLKLLDALFLQMNkltghihpelsglisltqldlslncltgevpesfSALKNLSLVQLFKnnlrgpfpsfvgdypnlEVLQVWGnnftgelpenlgrNRKLLLLDvssnqiegkiprdlckgeRLKSLILMQNlfsgpipeelgaCESLTKFRAMKNqlngtipagifnlPLLKMIELDhnllsgeipenlsisdSLNQLKVAYNniagkippsignltnlnvlslqnnrfngelpeeMFNLKVISLINVssnnisgeiptsisgcislttvdfsrnslsgeiPKAISQLRDLSILNlsrnqltgpiptdmqdmMSLTTLDLSynnlngevpsgghfpafdeasfagnpnlclprnvtclpsiysaqhshassfsTSKLLITAMALVSALLI
Flexible Loop (DISEMBL)
mtfdnwsslskpkMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVssnqiegkiprdlckGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI
Low Complexity Region (SEG)
MTFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKvislinvssnnisGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI
Disordered region (IsUnstruct)
***************LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT**********MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSAL**
Disordered Region (DISOPRED)
MTFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRN**********************LLITAMALVSALLI
Disordered Region (DISEMBL)
**********KPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYS*********STSKLLITAMALVSALLI
Disordered Region (DISPRO)
*TFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	549	2.2.26 [Sep-21-2011]
Q9SYQ8	980	Receptor protein kinase C	yes	no	0.978	0.547	0.594	0.0
O49545	1003	Leucine-rich repeat recep	no	no	0.934	0.511	0.484	1e-133
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.903	0.495	0.480	1e-129
O65440	992	Leucine-rich repeat recep	no	no	0.897	0.496	0.463	1e-119
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.892	0.470	0.412	1e-94
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.821	0.438	0.414	6e-94
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.899	0.487	0.388	2e-86
O82318	960	Probably inactive leucine	no	no	0.888	0.508	0.381	1e-84
Q9SGP2	996	Receptor-like protein kin	no	no	0.861	0.474	0.371	9e-84
C0LGX3	993	LRR receptor-like serine/	no	no	0.899	0.497	0.361	3e-78

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/542 (59%), Positives = 407/542 (75%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct: 115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 174

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct: 175 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 234

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
           PEFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 235 PEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 294

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 295 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 354

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct: 355 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 414

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G +P E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 533

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 534 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 593

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct: 594 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 652

Query: 548 LI 549
           ++
Sbjct: 653 IL 654

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/514 (48%), Positives = 332/514 (64%), Gaps = 1/514 (0%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
           L+ LN+S N F   FP +I  G+  L VLD +NNN TG LPV + +L  L+HL  GGNYF
Sbjct: 119 LRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYF 178

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
           +G+IP SY     +EYL ++G  L G  P  +  L  LRE+YIGY+N +  G+PPE G L
Sbjct: 179 AGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNL 238

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
           S+L   D A+C ++GEIP  + +L+ LD LFLQ+N  +G +  EL  L SL  +DLS N 
Sbjct: 239 SELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNM 298

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
            TGE+P SF+ LKNL+L+ LF+N L G  P F+GD P LEVLQ+W NNFTG +P+ LG N
Sbjct: 299 FTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGEN 358

Query: 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
            KL L+D+SSN++ G +P ++C G +L++LI + N   G IP+ LG CESLT+ R  +N 
Sbjct: 359 GKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENF 418

Query: 316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL 375
           LNG+IP G+F LP L  +EL  N LSGE+P    +S +L Q+ ++ N ++G +PP+IGN 
Sbjct: 419 LNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNF 478

Query: 376 TNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
           T +  L L  N+F G +P E+  L+ +S I+ S N  SG I   IS C  LT VD SRN 
Sbjct: 479 TGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNE 538

Query: 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP 495
           LSGEIP  I+ ++ L+ LNLSRN L G IP  +  M SLT+LD SYNNL+G VP  G F 
Sbjct: 539 LSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFS 598

Query: 496 AFDEASFAGNPNLCLPRNVTCLPSIYSAQH-SHA 528
            F+  SF GNP+LC P    C   +    H SH+
Sbjct: 599 YFNYTSFLGNPDLCGPYLGPCKDGVAKGGHQSHS 632

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/497 (48%), Positives = 325/497 (65%), Gaps = 1/497 (0%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
           L+ LN+S N F   FP ++  G+  L VLD +NNN TG LPV + +L  L+HL  GGNYF
Sbjct: 119 LRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYF 178

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
           SG+IP +Y     LEYL ++G  L G  P  +  L  LRE+YIGY+N +  G+PPE G L
Sbjct: 179 SGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNL 238

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
           S+L   D A+C ++GEIP  + +L+ LD LFLQ+N  TG I  EL  + SL  +DLS N 
Sbjct: 239 SELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNM 298

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
            TGE+P SFS LKNL+L+ LF+N L G  P F+G+ P LEVLQ+W NNFTG +P+ LG N
Sbjct: 299 FTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGEN 358

Query: 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
            +L++LD+SSN++ G +P ++C G RL +LI + N   G IP+ LG CESLT+ R  +N 
Sbjct: 359 GRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENF 418

Query: 316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
           LNG+IP  +F LP L  +EL  N L+GE+P     +S  L Q+ ++ N ++G +P +IGN
Sbjct: 419 LNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGN 478

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L+ +  L L  N+F+G +P E+  L+ +S ++ S N  SG I   IS C  LT VD SRN
Sbjct: 479 LSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRN 538

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
            LSG+IP  ++ ++ L+ LNLSRN L G IP  +  M SLT++D SYNNL+G VPS G F
Sbjct: 539 ELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQF 598

Query: 495 PAFDEASFAGNPNLCLP 511
             F+  SF GN +LC P
Sbjct: 599 SYFNYTSFVGNSHLCGP 615

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/498 (46%), Positives = 317/498 (63%), Gaps = 5/498 (1%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
           L+VLNIS N F+     +    MT+L  LDA++N+F G LP+ + +L  L+HL  GGNYF
Sbjct: 127 LEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYF 186

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
            GEIP SY    SL++L L+G  L G  P  L+ +  L ++Y+GY+N Y GGIP +FG L
Sbjct: 187 DGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRL 246

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
             L  LD+A+C++ G IPA L  LK L+ LFLQ N+LTG +  EL  + SL  LDLS N 
Sbjct: 247 INLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNF 306

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
           L GE+P   S L+ L L  LF N L G  P FV + P+L++L++W NNFTG++P  LG N
Sbjct: 307 LEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSN 366

Query: 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
             L+ +D+S+N++ G IP  LC G RLK LIL  N   GP+PE+LG CE L +FR  +N 
Sbjct: 367 GNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNF 426

Query: 316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKVAYNNIAGKIPPS 371
           L   +P G+  LP L ++EL +N L+GEIPE    N   S SL Q+ ++ N ++G IP S
Sbjct: 427 LTSKLPKGLIYLPNLSLLELQNNFLTGEIPEEEAGNAQFS-SLTQINLSNNRLSGPIPGS 485

Query: 372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
           I NL +L +L L  NR +G++P E+ +LK +  I++S NN SG+ P     C+SLT +D 
Sbjct: 486 IRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDL 545

Query: 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
           S N +SG+IP  ISQ+R L+ LN+S N     +P ++  M SLT+ D S+NN +G VP+ 
Sbjct: 546 SHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTS 605

Query: 492 GHFPAFDEASFAGNPNLC 509
           G F  F+  SF GNP LC
Sbjct: 606 GQFSYFNNTSFLGNPFLC 623

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 204/494 (41%), Positives = 284/494 (57%), Gaps = 4/494 (0%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
           L  L+IS N F   FP  I   +  L+V +AF+NNF G LP ++  L+ L+ L+FGG+YF
Sbjct: 131 LTTLDISRNSFDSSFPPGIS-KLKFLKVFNAFSNNFEGLLPSDVSRLRFLEELNFGGSYF 189

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
            GEIP +Y  +Q L+++ L G  L G  P  L LL  L+ M IGY N + G IP EF  L
Sbjct: 190 EGEIPAAYGGLQRLKFIHLAGNVLGGKLPPRLGLLTELQHMEIGY-NHFNGNIPSEFALL 248

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
           S L+  D+++C++SG +P  L  L  L+ LFL  N  TG I    S L SL  LD S N 
Sbjct: 249 SNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQ 308

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
           L+G +P  FS LKNL+ + L  NNL G  P  +G+ P L  L +W NNFTG LP  LG N
Sbjct: 309 LSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSN 368

Query: 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
            KL  +DVS+N   G IP  LC G +L  LIL  N+F G +P+ L  CESL +FR+  N+
Sbjct: 369 GKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEGELPKSLTRCESLWRFRSQNNR 428

Query: 316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL 375
           LNGTIP G  +L  L  ++L +N  + +IP + + +  L  L ++ N    K+P +I   
Sbjct: 429 LNGTIPIGFGSLRNLTFVDLSNNRFTDQIPADFATAPVLQYLNLSTNFFHRKLPENIWKA 488

Query: 376 TNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
            NL + S   +   GE+P  +   K    I +  N+++G IP  I  C  L  ++ S+N 
Sbjct: 489 PNLQIFSASFSNLIGEIPNYV-GCKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNH 547

Query: 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP 495
           L+G IP  IS L  ++ ++LS N LTG IP+D     ++TT ++SYN L G +PSG  F 
Sbjct: 548 LNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGS-FA 606

Query: 496 AFDEASFAGNPNLC 509
             + + F+ N  LC
Sbjct: 607 HLNPSFFSSNEGLC 620

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  345 bits (885), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 198/478 (41%), Positives = 295/478 (61%), Gaps = 27/478 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGM-TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
           SLKV+++S N F   FP  +  GM T L  ++A +NNF+G LP ++ +   L+ L F G 
Sbjct: 126 SLKVIDVSVNSFFGTFPYGL--GMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGG 183

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
           YF G +P S+  +++L++LGL+G    G  P  +  L +L  + +GY N + G IP EFG
Sbjct: 184 YFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGY-NGFMGEIPEEFG 242

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            L++L+ LD+A  N++G+IP+SL QLK L  ++L  N+LTG +  EL G+ SL  LDLS 
Sbjct: 243 KLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSD 302

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
           N +TGE+P     LKNL L+ L +N L G  PS + + PNLEVL++W N+  G LP +LG
Sbjct: 303 NQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLG 362

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
           +N  L  LDVSSN++ G IP  LC    L  LIL  N FSG IPEE+ +C +L + R  K
Sbjct: 363 KNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQK 422

Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV-------------- 359
           N ++G+IPAG  +LP+L+ +EL  N L+G+IP+++++S SL+ + +              
Sbjct: 423 NHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFS 482

Query: 360 ---------AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSN 410
                    ++NN AGKIP  I +  +L+VL L  N F+G +PE + + + +  +N+ SN
Sbjct: 483 SPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSN 542

Query: 411 NISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468
            + GEIP +++G   L  +D S NSL+G IP  +     L +LN+S N+L GPIP++M
Sbjct: 543 QLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNM 600

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 289/515 (56%), Gaps = 21/515 (4%)

Query: 15  SLKVLNISGNGF-----------------QDYFPGQIVVGMTE---LEVLDAFNNNFTGP 54
           SL   NIS NGF                 Q+ F G + +   E   L  L+A  NN +G 
Sbjct: 96  SLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGN 155

Query: 55  LPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLR 114
           L  ++ +L +L+ L   GN+F G +P S+  +Q L +LGL+G  L G  P  L  L +L 
Sbjct: 156 LTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLE 215

Query: 115 EMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG 174
              +GY N + G IPPEFG ++ L+ LD+A   +SGEIP+ L +LK L+ L L  N  TG
Sbjct: 216 TAILGY-NEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTG 274

Query: 175 HIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNL 234
            I  E+  + +L  LD S N LTGE+P   + LKNL L+ L +N L G  P  +     L
Sbjct: 275 TIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQL 334

Query: 235 EVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294
           +VL++W N  +GELP +LG+N  L  LDVSSN   G+IP  LC    L  LIL  N F+G
Sbjct: 335 QVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTG 394

Query: 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSL 354
            IP  L  C+SL + R   N LNG+IP G   L  L+ +EL  N LSG IP ++S S SL
Sbjct: 395 QIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSL 454

Query: 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG 414
           + +  + N I   +P +I ++ NL    + +N  +GE+P++  +   +S +++SSN ++G
Sbjct: 455 SFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTG 514

Query: 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL 474
            IP+SI+ C  L +++   N+L+GEIP+ I+ +  L++L+LS N LTG +P  +    +L
Sbjct: 515 TIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPAL 574

Query: 475 TTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509
             L++SYN L G VP  G     +     GN  LC
Sbjct: 575 ELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLC 609

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  314 bits (804), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/495 (38%), Positives = 276/495 (55%), Gaps = 7/495 (1%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL+ LN+S N F    P      +  L  LD  NN FTG +  +I    NL+ L  GGN 
Sbjct: 124 SLRYLNLSNNNFSGSIPRGF---LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNV 180

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +G +P     +  LE+L L    L G  PV L  +KNL+ +Y+GY N  +G IP + G 
Sbjct: 181 LTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGY-NNLSGEIPYQIGG 239

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           LS L  LD+   N+SG IP SL  LK L+ +FL  NKL+G I P +  L +L  LD S N
Sbjct: 240 LSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDN 299

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            L+GE+PE  + +++L ++ LF NNL G  P  V   P L+VLQ+W N F+G +P NLG+
Sbjct: 300 SLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGK 359

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           +  L +LD+S+N + GK+P  LC    L  LIL  N     IP  LG C+SL + R   N
Sbjct: 360 HNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNN 419

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
             +G +P G   L L+  ++L +N L G I  N      L  L ++ N   G++ P    
Sbjct: 420 GFSGKLPRGFTKLQLVNFLDLSNNNLQGNI--NTWDMPQLEMLDLSVNKFFGEL-PDFSR 476

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
              L  L L  N+ +G +P+ +     I  +++S N I+G IP  +S C +L  +D S N
Sbjct: 477 SKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHN 536

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           + +GEIP + ++ + LS L+LS NQL+G IP ++ ++ SL  +++S+N L+G +P  G F
Sbjct: 537 NFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAF 596

Query: 495 PAFDEASFAGNPNLC 509
            A +  +  GN +LC
Sbjct: 597 LAINATAVEGNIDLC 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  311 bits (797), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/498 (37%), Positives = 276/498 (55%), Gaps = 25/498 (5%)

Query: 35  VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL 94
           +     L+ LD   N  TG LP  +  +  L HL   GN FSG+IP S+ + ++LE L L
Sbjct: 104 IAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSL 163

Query: 95  NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA 154
               L+GT P FL  +  L+ + + Y       IPPEFG L+ L V+ +  C++ G+IP 
Sbjct: 164 VYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPD 223

Query: 155 SLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214
           SL QL  L  L L +N L GHI P L GL ++ Q++L  N LTGE+P     LK+L L+ 
Sbjct: 224 SLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLD 283

Query: 215 -----------------------LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN 251
                                  L++NNL G  P+ +   PNL  ++++GN  TG LP++
Sbjct: 284 ASMNQLTGKIPDELCRVPLESLNLYENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKD 343

Query: 252 LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA 311
           LG N  L  LDVS N+  G +P DLC    L+ L+++ N FSG IPE L  C SLT+ R 
Sbjct: 344 LGLNSPLRWLDVSENEFSGDLPADLCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRL 403

Query: 312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS 371
             N+ +G++P G + LP + ++EL +N  SGEI +++  + +L+ L ++ N   G +P  
Sbjct: 404 AYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNEFTGSLPEE 463

Query: 372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
           IG+L NLN LS   N+F+G LP+ + +L  +  +++  N  SGE+ + I     L  ++ 
Sbjct: 464 IGSLDNLNQLSASGNKFSGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNL 523

Query: 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
           + N  +G+IP  I  L  L+ L+LS N  +G IP  +Q  + L  L+LSYN L+G++P  
Sbjct: 524 ADNEFTGKIPDEIGSLSVLNYLDLSGNMFSGKIPVSLQS-LKLNQLNLSYNRLSGDLPPS 582

Query: 492 GHFPAFDEASFAGNPNLC 509
                + + SF GNP LC
Sbjct: 583 LAKDMY-KNSFIGNPGLC 599

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  293 bits (749), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 275/523 (52%), Gaps = 29/523 (5%)

Query: 49  NNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLS 108
           NNF+G LP      + L+ L    N F+GEIP+SY  + +L+ L LNG  L+G  P FL 
Sbjct: 133 NNFSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLG 192

Query: 109 LLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQ 168
            L  L  + + Y +     IP   G LS L  L +   N+ GEIP S+  L LL+ L L 
Sbjct: 193 YLTELTRLDLAYISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLA 252

Query: 169 MNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS-- 226
           MN LTG I   +  L S+ Q++L  N L+G++PES   L  L    + +NNL G  P   
Sbjct: 253 MNSLTGEIPESIGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKI 312

Query: 227 --------------FVGDYP-------NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS 265
                         F G  P       NL   +++ N+FTG LP NLG+  ++   DVS+
Sbjct: 313 AALQLISFNLNDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVST 372

Query: 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF 325
           N+  G++P  LC   +L+ +I   N  SG IPE  G C SL   R   N+L+G +PA  +
Sbjct: 373 NRFSGELPPYLCYRRKLQKIITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFW 432

Query: 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN 385
            LPL ++   ++N L G IP ++S +  L+QL+++ NN +G IP  + +L +L V+ L  
Sbjct: 433 ELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSR 492

Query: 386 NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS 445
           N F G +P  +  LK +  + +  N + GEIP+S+S C  LT ++ S N L G IP  + 
Sbjct: 493 NSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELG 552

Query: 446 QLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGN 505
            L  L+ L+LS NQLTG IP ++   + L   ++S N L G++PSG     F   SF GN
Sbjct: 553 DLPVLNYLDLSNNQLTGEIPAELL-RLKLNQFNVSDNKLYGKIPSGFQQDIF-RPSFLGN 610

Query: 506 PNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALL 548
           PNLC P     L  I   +    + +     ++  +AL  AL+
Sbjct: 611 PNLCAPN----LDPIRPCRSKRETRYILPISILCIVALTGALV 649

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
224085908	973	predicted protein [Populus trichocarpa]	0.952	0.537	0.633	0.0
224061985	939	predicted protein [Populus trichocarpa]	0.965	0.564	0.620	0.0
255538984	985	Receptor protein kinase CLAVATA1 precurs	0.970	0.541	0.605	0.0
225457925	984	PREDICTED: receptor protein kinase CLAVA	0.969	0.540	0.606	0.0
15222877	980	receptor protein kinase CLAVATA1 [Arabid	0.978	0.547	0.594	1e-179
25287710	978	protein T4O12.5 [imported] - Arabidopsis	0.978	0.549	0.594	1e-179
297842329	980	hypothetical protein ARALYDRAFT_476729 [	0.978	0.547	0.597	1e-179
2160756	980	CLV1 receptor kinase [Arabidopsis thalia	0.978	0.547	0.592	1e-178
4105699	980	receptor kinase [Arabidopsis thaliana]	0.978	0.547	0.592	1e-178
290796119	987	CLAVATA1 [Brassica napus]	0.979	0.545	0.591	1e-176

>gi|224085908|ref|XP_002307734.1| predicted protein [Populus trichocarpa] gi|224144099|ref|XP_002336108.1| predicted protein [Populus trichocarpa] gi|222857183|gb|EEE94730.1| predicted protein [Populus trichocarpa] gi|222872880|gb|EEF10011.1| predicted protein [Populus trichocarpa]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/529 (63%), Positives = 403/529 (76%), Gaps = 6/529 (1%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL++LNIS N     FPG+I +GM  LEVLD +NNNFTG LP EIV LKNLKH+  GGN+
Sbjct: 116 SLRILNISNNVIAGNFPGKITLGMALLEVLDVYNNNFTGALPTEIVKLKNLKHVHLGGNF 175

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
           FSG IPE YSEI SLEYLGLNG  L+G  P  LS LKNL+ + +GYFN Y G IPPEFG+
Sbjct: 176 FSGTIPEEYSEILSLEYLGLNGNALSGKVPSSLSRLKNLKSLCVGYFNRYEGSIPPEFGS 235

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           LS L +LDMASCN+ GEIP++LSQL  L +LFLQ+N LTGHI PELSGLISL  LDLS+N
Sbjct: 236 LSNLELLDMASCNLDGEIPSALSQLTHLHSLFLQVNNLTGHIPPELSGLISLKSLDLSIN 295

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            LTGE+PESFS LKN+ L+ LF+N L GP P F GD+PNLEVLQVWGNNFT ELP+NLGR
Sbjct: 296 NLTGEIPESFSDLKNIELINLFQNKLHGPIPEFFGDFPNLEVLQVWGNNFTFELPQNLGR 355

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           N KL++LDVS N + G +PRDLCKG +L +LILM N F G +P+E+G C+SL K R M N
Sbjct: 356 NGKLMMLDVSINHLTGLVPRDLCKGGKLTTLILMNNFFLGSLPDEIGQCKSLLKIRIMNN 415

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
             +GTIPAGIFNLPL  ++EL +NL SGE+P  +S  D+L  L V+ N I GKIPP+IGN
Sbjct: 416 MFSGTIPAGIFNLPLATLVELSNNLFSGELPPEIS-GDALGLLSVSNNRITGKIPPAIGN 474

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L NL  LSL  NR +GE+PEE++ LK ++ IN+ +NNI GEIP SIS C SLT+VDFS+N
Sbjct: 475 LKNLQTLSLDTNRLSGEIPEEIWGLKSLTKINIRANNIRGEIPASISHCTSLTSVDFSQN 534

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           SLSGEIPK I++L DLS L+LSRNQLTG +P ++  M SLT+L+LSYNNL G +PS G F
Sbjct: 535 SLSGEIPKKIAKLNDLSFLDLSRNQLTGQLPGEIGYMRSLTSLNLSYNNLFGRIPSAGQF 594

Query: 495 PAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSH-ASSFSTSKLLITAMA 542
            AF+++SF GNPNLC  RN TC        H H   SFSTSKL+IT +A
Sbjct: 595 LAFNDSSFLGNPNLCAARNNTC----SFGDHGHRGGSFSTSKLIITVIA 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061985|ref|XP_002300697.1| predicted protein [Populus trichocarpa] gi|222842423|gb|EEE79970.1| predicted protein [Populus trichocarpa]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/535 (62%), Positives = 416/535 (77%), Gaps = 5/535 (0%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL++LNISGN     F G+I  GMT+LEVLD +NNN +GPLP+EI +LK LKHL  GGN+
Sbjct: 83  SLRILNISGNAIGGNFSGKITPGMTQLEVLDIYNNNCSGPLPIEIANLKKLKHLHLGGNF 142

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
           FSG+IPE YSEI  LE+LGLNG  L+G  P  LS LKNL+ + IGY+N Y GGIPPEFG+
Sbjct: 143 FSGKIPEEYSEIMILEFLGLNGNDLSGKVPSSLSKLKNLKSLCIGYYNHYEGGIPPEFGS 202

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           LS L +LDM SCN++GEIP++L QL  L +LFLQ N LTG+I  ELSGLISL  LDLS+N
Sbjct: 203 LSNLELLDMGSCNLNGEIPSTLGQLTHLHSLFLQFNNLTGYIPSELSGLISLKSLDLSIN 262

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            LTGE+PESFSALKNL+L+ LF+N L GP P FVGD+PNLEVLQVWGNNFT ELP+ LGR
Sbjct: 263 NLTGEIPESFSALKNLTLLNLFQNKLHGPIPDFVGDFPNLEVLQVWGNNFTFELPKQLGR 322

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           N KL+ LDVS N + G +PRDLCKG +LK+LILM N F G +PEE+G C+SL K R + N
Sbjct: 323 NGKLMYLDVSYNHLTGLVPRDLCKGGKLKTLILMNNFFIGSLPEEIGQCKSLLKIRIICN 382

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
              GTIPAGIFNLPL+  IEL HN  SGE+P  +S  D+L  L V+ N I G+IP +IGN
Sbjct: 383 LFTGTIPAGIFNLPLVTQIELSHNYFSGELPPEIS-GDALGSLSVSDNRITGRIPRAIGN 441

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L +L  LSL+ NR +GE+P+E+F+L+++S I++ +NNISGEIP S+  C SLT+VDFS+N
Sbjct: 442 LKSLQFLSLEMNRLSGEIPDEIFSLEILSKISIRANNISGEIPASMFHCTSLTSVDFSQN 501

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           S+SGEIPK I++L+DLSIL+LSRNQLTG +P++++ M SLTTL+LSYNNL G +PS G F
Sbjct: 502 SISGEIPKEITKLKDLSILDLSRNQLTGQLPSEIRYMTSLTTLNLSYNNLFGRIPSVGQF 561

Query: 495 PAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI 549
            AF+++SF GNPNLC+ RN +C        H H  SF+TSKL+IT +ALV+ALL+
Sbjct: 562 LAFNDSSFLGNPNLCVARNDSC----SFGGHGHRRSFNTSKLMITVIALVTALLL 612

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538984|ref|XP_002510557.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gi|223551258|gb|EEF52744.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/535 (60%), Positives = 416/535 (77%), Gaps = 2/535 (0%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL++ NIS N F   FPG+I + MT+L++LD +NNNF+G LP+E++ LKNLKHL  GGNY
Sbjct: 121 SLRIFNISNNAFIGNFPGEITLVMTQLQILDIYNNNFSGLLPLELIKLKNLKHLHLGGNY 180

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
           FSG IPESYS I+SLEYLGLNG  L+G  P  L+ LKNLR++Y+GYFN++ GGIPPEFG+
Sbjct: 181 FSGTIPESYSAIESLEYLGLNGNSLSGKVPASLAKLKNLRKLYLGYFNSWEGGIPPEFGS 240

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           LS L +LDMA  N+SGEIP SL QLK L++LFLQMN+L+GHI PELS LISL  LDLS+N
Sbjct: 241 LSSLEILDMAQSNLSGEIPPSLGQLKNLNSLFLQMNRLSGHIPPELSDLISLQSLDLSIN 300

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            L GE+P SFS LKN++L+ LF+NNL G  P F+GD+PNLEVL VW NNFT ELP+NLG 
Sbjct: 301 SLKGEIPASFSKLKNITLIHLFQNNLGGEIPEFIGDFPNLEVLHVWENNFTLELPKNLGS 360

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           + KL +LDVS N + G IP+DLCKG RLK L+LM+N F GP+P+ELG C+SL K R   N
Sbjct: 361 SGKLKMLDVSYNHLTGLIPKDLCKGGRLKELVLMKNFFLGPLPDELGQCKSLYKIRVANN 420

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
            L+GTIP+GIFNLP + ++EL+ N  SGE+P  +S   +L  LK++ N I+G IP ++GN
Sbjct: 421 MLSGTIPSGIFNLPSMAILELNDNYFSGELPSEMS-GIALGLLKISNNLISGSIPETLGN 479

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L NL ++ L+ NR +GE+P E+FNLK ++ IN S+NN+SG+IP SIS C SLT+VDFSRN
Sbjct: 480 LRNLQIIKLEINRLSGEIPNEIFNLKYLTAINFSANNLSGDIPPSISHCTSLTSVDFSRN 539

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           +L G+IP  I+ L+DLSILN+S+N LTG IP D++ M SLTTLDLSYNNL G VP+GG F
Sbjct: 540 NLHGQIPVEIANLKDLSILNVSQNHLTGQIPGDIRIMTSLTTLDLSYNNLLGRVPTGGQF 599

Query: 495 PAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFSTSKLLITAMALVSALLI 549
             F ++SF GNPNLC P  V+C PS++ + H H +SF T KL+IT +ALV+AL++
Sbjct: 600 LVFKDSSFIGNPNLCAPHQVSC-PSLHGSGHGHTASFGTPKLIITVIALVTALML 653

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457925|ref|XP_002279563.1| PREDICTED: receptor protein kinase CLAVATA1-like [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/539 (60%), Positives = 415/539 (76%), Gaps = 7/539 (1%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SLK++N+S N F   FPG+I+VGM ELEVLD +NNNFTGPLP E+  LK LKH+  GGNY
Sbjct: 123 SLKLVNLSNNNFNGQFPGRILVGMKELEVLDMYNNNFTGPLPTEVGKLKKLKHMHLGGNY 182

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
           FSG+IP+ +S+I SLE LGLNG  L+G  P  L  L NL+ +++GYFN Y GGIPPE G 
Sbjct: 183 FSGDIPDVFSDIHSLELLGLNGNNLSGRIPTSLVRLSNLQGLFLGYFNIYEGGIPPELGL 242

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           LS LRVLD+ SCN++GEIP SL +LK+L +LFLQ+N+L+GH+  ELSGL++L  LDLS N
Sbjct: 243 LSSLRVLDLGSCNLTGEIPPSLGRLKMLHSLFLQLNQLSGHLPQELSGLVNLKSLDLSNN 302

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            LTGE+PESFS L+ L+L+ LF N LRG  P F+GD PNLEVLQVW NNFT ELPE LGR
Sbjct: 303 VLTGEIPESFSQLRELTLINLFGNQLRGRIPEFIGDLPNLEVLQVWENNFTFELPERLGR 362

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           N KL  LDV++N + G IPRDLCKG +L +LILM+N F GPIPE+LG C+SLT+ R MKN
Sbjct: 363 NGKLKNLDVATNHLTGTIPRDLCKGGKLLTLILMENYFFGPIPEQLGECKSLTRIRIMKN 422

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
             NGTIPAG+FNLPL+ M+ELD NL +GE+P ++S  D L    V+ N I GKIPP+IGN
Sbjct: 423 FFNGTIPAGLFNLPLVNMLELDDNLFTGELPAHIS-GDVLGIFTVSNNLITGKIPPAIGN 481

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L++L  L+LQ NRF+GE+P E+FNLK++S +N+S+NN+SGEIP  I  C SLT++DFS+N
Sbjct: 482 LSSLQTLALQINRFSGEIPGEIFNLKMLSKVNISANNLSGEIPACIVSCTSLTSIDFSQN 541

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           SL+GEIPK I++L  L ILNLS N L G IP++++ M SLTTLDLSYN+ +G +P+GG F
Sbjct: 542 SLNGEIPKGIAKLGILGILNLSTNHLNGQIPSEIKSMASLTTLDLSYNDFSGVIPTGGQF 601

Query: 495 PAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHA----SSFSTSKLLITAMALVSALLI 549
           P F+ +SFAGNPNLCLPR V C  S+ +    H     SSF++SKL+IT +ALV+  L+
Sbjct: 602 PVFNSSSFAGNPNLCLPR-VPC-SSLQNITQIHGRRQTSSFTSSKLVITIIALVAFALV 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222877|ref|NP_177710.1| receptor protein kinase CLAVATA1 [Arabidopsis thaliana] gi|51338834|sp|Q9SYQ8.3|CLV1_ARATH RecName: Full=Receptor protein kinase CLAVATA1; Flags: Precursor gi|224589487|gb|ACN59277.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332197641|gb|AEE35762.1| receptor protein kinase CLAVATA1 [Arabidopsis thaliana]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/542 (59%), Positives = 407/542 (75%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct: 115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 174

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct: 175 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 234

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
           PEFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 235 PEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 294

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 295 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 354

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct: 355 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 414

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G +P E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 533

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 534 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 593

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct: 594 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 652

Query: 548 LI 549
           ++
Sbjct: 653 IL 654

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25287710|pir||E96787 protein T4O12.5 [imported] - Arabidopsis thaliana gi|6721118|gb|AAF26772.1|AC007396_21 T4O12.5 [Arabidopsis thaliana]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/542 (59%), Positives = 407/542 (75%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct: 113 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 172

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct: 173 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 232

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
           PEFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 233 PEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 292

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 293 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 352

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct: 353 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 412

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 413 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 471

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G +P E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 472 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 531

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 532 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 591

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct: 592 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 650

Query: 548 LI 549
           ++
Sbjct: 651 IL 652

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class: N/A

Phylum: Streptophyta

>gi|297842329|ref|XP_002889046.1| hypothetical protein ARALYDRAFT_476729 [Arabidopsis lyrata subsp. lyrata] gi|297334887|gb|EFH65305.1| hypothetical protein ARALYDRAFT_476729 [Arabidopsis lyrata subsp. lyrata]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/542 (59%), Positives = 405/542 (74%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+IV  M +LEVLDA+NN FTG LP EI  LK LKHLS
Sbjct: 115 KSLTSLKVLNISNNGNLNGSFPGEIVKAMVDLEVLDAYNNGFTGTLPPEIPELKKLKHLS 174

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
            GGN+F+GEIPESY +IQSLEYLGLNG G++G +P FLS LKNL+EMYIGY+N+YTGGIP
Sbjct: 175 LGGNFFNGEIPESYGDIQSLEYLGLNGAGISGKSPAFLSRLKNLKEMYIGYYNSYTGGIP 234

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
           PEFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 235 PEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHVNNLTGHIPPELSGLVSLKSL 294

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 295 DLSINQLTGEIPQSFIDLGNITLINLFRNNLYGQIPDCIGELPKLEVFEVWENNFTLQLP 354

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP DLC+GE+L+ LIL  N F GPIPEELG C+SL K 
Sbjct: 355 ANLGRNGNLIKLDVSHNHLTGLIPMDLCRGEKLEMLILTNNFFFGPIPEELGKCKSLNKI 414

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ MIEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTMIELTDNFFSGELPATMS-GDVLDQIYLSNNWFSGEIP 473

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G LP E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNLPREIFELKHLSKINTSANNITGVIPDSISRCTTLISV 533

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIP+ I+ + +L  LNLS NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 534 DLSRNRITGEIPEDINNVINLGTLNLSGNQLTGSIPTRIGNMTSLTTLDLSFNDLSGRVP 593

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S++++T +A ++AL
Sbjct: 594 LGGQFMVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVLTVIAAITAL 652

Query: 548 LI 549
           ++
Sbjct: 653 IL 654

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2160756|gb|AAB58929.1| CLV1 receptor kinase [Arabidopsis thaliana]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/542 (59%), Positives = 406/542 (74%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct: 115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 174

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct: 175 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 234

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
            EFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 235 REFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 294

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 295 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 354

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct: 355 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 414

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G +P E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 533

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 534 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 593

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct: 594 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 652

Query: 548 LI 549
           ++
Sbjct: 653 IL 654

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4105699|gb|AAD02501.1| receptor kinase [Arabidopsis thaliana]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/542 (59%), Positives = 406/542 (74%), Gaps = 5/542 (0%)

Query: 11  KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct: 115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 174

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct: 175 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 234

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
            EFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct: 235 REFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 294

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct: 295 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 354

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct: 355 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 414

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF G +P E+F LK +S IN S+NNI+G IP SIS C +L +V
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 533

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct: 534 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 593

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
            GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct: 594 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 652

Query: 548 LI 549
           ++
Sbjct: 653 IL 654

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290796119|gb|ADD64789.1| CLAVATA1 [Brassica napus]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 320/541 (59%), Positives = 400/541 (73%), Gaps = 3/541 (0%)

Query: 11  KPKMSLKVLNISGN-GFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
           K   SLKVLNIS N      FPG+I+  M +LEVLDA+NNNFTGPLP EI  LK L+HLS
Sbjct: 122 KSLTSLKVLNISNNVNLNGTFPGEILTPMVDLEVLDAYNNNFTGPLPPEIPGLKKLRHLS 181

Query: 70  FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
            GGN+ +GEIPESY +IQSLEYLGLNG GL+G +P FLS LKNL+EMY+GYFN+YTGG+P
Sbjct: 182 LGGNFLTGEIPESYGDIQSLEYLGLNGAGLSGESPAFLSRLKNLKEMYVGYFNSYTGGVP 241

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
           PEFG L+ L VLDMASC ++GEIP +LS LK L  LFL +N LTG+I PELSGLISL  L
Sbjct: 242 PEFGELTNLEVLDMASCTLTGEIPTTLSNLKHLHTLFLHINNLTGNIPPELSGLISLKSL 301

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           DLS+N LTGE+P+SF +L N++LV LF+NNL GP P F+GD PNL+VLQVW NNFT ELP
Sbjct: 302 DLSINQLTGEIPQSFISLWNITLVNLFRNNLHGPIPEFIGDMPNLQVLQVWENNFTLELP 361

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            NLGRN  L  LDVS N + G IP DLC+G +L++L+L  N F G IPE+LG C+SL K 
Sbjct: 362 ANLGRNGNLKKLDVSDNHLTGLIPMDLCRGGKLETLVLSDNFFFGSIPEKLGRCKSLNKI 421

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
           R +KN LNGT+PAG+F LPL+ +IEL  N  SGE+P  +S  D L+ + ++ N   G IP
Sbjct: 422 RIVKNLLNGTVPAGLFTLPLVTIIELTDNFFSGELPGEMS-GDLLDHIYLSNNWFTGLIP 480

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           P+IGN  NL  L L  NRF+G +P E+F LK ++ IN S+NN++G+IP SIS C SL +V
Sbjct: 481 PAIGNFKNLQDLFLDRNRFSGNIPREVFELKHLTKINTSANNLTGDIPDSISRCTSLISV 540

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           D SRN + G+IPK I  + +L  LNLS NQLTG IP  +  M SLTTLDLS+N+L+G VP
Sbjct: 541 DLSRNRIGGDIPKDIHDVINLGTLNLSGNQLTGSIPIGIGKMTSLTTLDLSFNDLSGRVP 600

Query: 490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI-YSAQHSHASSFSTSKLLITAMALVSALL 548
            GG F  F++ SFAGNP LCLPR+V+CL     ++   H + FS S++ IT +A V+AL+
Sbjct: 601 LGGQFLVFNDTSFAGNPYLCLPRHVSCLTRPGQTSDRIHTALFSPSRIAITIIAAVTALI 660

Query: 549 I 549
           +
Sbjct: 661 L 661

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
TAIR|locus:2204350	980	CLV1 "AT1G75820" [Arabidopsis	0.978	0.547	0.581	4.7e-167
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.983	0.543	0.480	2.3e-133
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.978	0.535	0.468	5.3e-127
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.965	0.528	0.456	1e-123
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.897	0.496	0.453	1.2e-113
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.894	0.477	0.405	1.1e-96
TAIR|locus:2161158	1041	PXY "PHLOEM INTERCALATED WITH	0.892	0.470	0.408	3.4e-93
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.941	0.510	0.380	3.6e-89
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.888	0.508	0.373	2.7e-84
TAIR|locus:2207036	977	AT1G72180 [Arabidopsis thalian	0.983	0.552	0.348	1.2e-79

TAIR|locus:2204350 CLV1 "AT1G75820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1625 (577.1 bits), Expect = 4.7e-167, P = 4.7e-167
 Identities = 315/542 (58%), Positives = 397/542 (73%)

Query:    11 KPKMSLKVLNISGNG-FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLS 69
             K   SLKVLNIS NG     FPG+I+  M +LEVLD +NNNF G LP E+  LK LK+LS
Sbjct:   115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLS 174

Query:    70 FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
             FGGN+FSGEIPESY +IQSLEYLGLNG GL+G +P FLS LKNLREMYIGY+N+YTGG+P
Sbjct:   175 FGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVP 234

Query:   130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
             PEFG L+KL +LDMASC ++GEIP SLS LK L  LFL +N LTGHI PELSGL+SL  L
Sbjct:   235 PEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSL 294

Query:   190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
             DLS+N LTGE+P+SF  L N++L+ LF+NNL G  P  +G+ P LEV +VW NNFT +LP
Sbjct:   295 DLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLP 354

Query:   250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
              NLGRN  L+ LDVS N + G IP+DLC+GE+L+ LIL  N F GPIPEELG C+SLTK 
Sbjct:   355 ANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKI 414

Query:   310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
             R +KN LNGT+PAG+FNLPL+ +IEL  N  SGE+P  +S  D L+Q+ ++ N  +G+IP
Sbjct:   415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query:   370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTV 429
             P+IGN  NL  L L  NRF G +P E+F LK             G IP SIS C +L +V
Sbjct:   474 PAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISV 533

Query:   430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
             D SRN ++GEIPK I+ +++L  LN+S NQLTG IPT + +M SLTTLDLS+N+L+G VP
Sbjct:   534 DLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVP 593

Query:   490 SGGHFPAFDEASFAGNPNLCLPRNVTCLPSI--YSAQHSHASSFSTSKLLITAMALVSAL 547
              GG F  F+E SFAGN  LCLP  V+C P+    ++ H+H + FS S+++IT +A ++ L
Sbjct:   594 LGGQFLVFNETSFAGNTYLCLPHRVSC-PTRPGQTSDHNHTALFSPSRIVITVIAAITGL 652

Query:   548 LI 549
             ++
Sbjct:   653 IL 654

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007172 "signal complex assembly" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0030154 "cell differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 265/552 (48%), Positives = 353/552 (63%)

Query:     9 LSKPKM-SLKVLNISGNGFQDYFP-----GQIVVGMTELEVLDAFNNNFTGPLPVEIVSL 62
             L  P + SL+ LN+S N    +FP     G        LE++DA+NNN +G LP    S 
Sbjct:   112 LELPTLPSLRHLNLSNNNLSGHFPVPDSGGGASPYFPSLELIDAYNNNLSGLLPPFSASH 171

Query:    63 KNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN 122
               L++L  GGNYF+G IP+SY ++ +LEYLGLNG  L+G  PV LS L  LREMYIGY+N
Sbjct:   172 ARLRYLHLGGNYFTGAIPDSYGDLAALEYLGLNGNTLSGHVPVSLSRLTRLREMYIGYYN 231

Query:   123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSG 182
              Y GG+PPEFG L  L  LDM+SCN++G +P  L +L+ LD LFLQ N+L+G I P+L  
Sbjct:   232 QYDGGVPPEFGDLGALLRLDMSSCNLTGPVPPELGRLQRLDTLFLQWNRLSGEIPPQLGD 291

Query:   183 LISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGN 242
             L SL  LDLS+N L GE+P S + L NL L+ LF+N+LRG  P FV  +  LEVLQ+W N
Sbjct:   292 LSSLASLDLSVNDLAGEIPPSLANLSNLKLLNLFRNHLRGSIPDFVAGFAQLEVLQLWDN 351

Query:   243 NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA 302
             N TG +P  LG+N +L  LD+++N + G IP DLC G RL+ L+LM+N   GPIP+ LG 
Sbjct:   352 NLTGNIPAGLGKNGRLKTLDLATNHLTGPIPADLCAGRRLEMLVLMENGLFGPIPDSLGD 411

Query:   303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYN 362
             C++LT+ R  KN L G +PAG+FNLP   M+EL  NLL+GE+P+ +   D +  L +  N
Sbjct:   412 CKTLTRVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIG-GDKIGMLLLGNN 470

Query:   363 NIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISG 422
              I G+IPP+IGNL  L  LSL++N F+G LP E+ NLK             G IP  +  
Sbjct:   471 GIGGRIPPAIGNLPALQTLSLESNNFSGALPPEIGNLKNLSRLNVSGNALTGAIPDELIR 530

Query:   423 CISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482
             C SL  VD SRN  SGEIP++I+ L+ L  LN+SRN+LTG +P +M +M SLTTLD+SYN
Sbjct:   531 CASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLTTLDVSYN 590

Query:   483 NLNGEVPSGGHFPAFDEASFAGNPNLCL-PRNVTCLPSIYSAQHSHASS----FSTSKLL 537
             +L+G VP  G F  F+E+SF GNP LC  P    C PS+        S     + + K+L
Sbjct:   591 SLSGPVPMQGQFLVFNESSFVGNPGLCGGPVADACPPSMAGGGGGAGSQLRLRWDSKKML 650

Query:   538 ITAMALVSALLI 549
             +  +A  +A+ +
Sbjct:   651 VALVAAFAAVAV 662

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 255/544 (46%), Positives = 339/544 (62%)

Query:     7 SSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLK 66
             SSLS     L+ LN+S N F   FP +I  G+  L VLD +NNN TG LPV + +L  L+
Sbjct:   114 SSLS----GLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLR 169

Query:    67 HLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG 126
             HL  GGNYF+G+IP SY     +EYL ++G  L G  P  +  L  LRE+YIGY+N +  
Sbjct:   170 HLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFED 229

Query:   127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
             G+PPE G LS+L   D A+C ++GEIP  + +L+ LD LFLQ+N  +G +  EL  L SL
Sbjct:   230 GLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNVFSGPLTWELGTLSSL 289

Query:   187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
               +DLS N  TGE+P SF+ LKNL+L+ LF+N L G  P F+GD P LEVLQ+W NNFTG
Sbjct:   290 KSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQLWENNFTG 349

Query:   247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESL 306
              +P+ LG N KL L+D+SSN++ G +P ++C G +L++LI + N   G IP+ LG CESL
Sbjct:   350 SIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFLFGSIPDSLGKCESL 409

Query:   307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG 366
             T+ R  +N LNG+IP G+F LP L  +EL  N LSGE+P    +S +L Q+ ++ N ++G
Sbjct:   410 TRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSG 469

Query:   367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISL 426
              +PP+IGN T +  L L  N+F G +P E+  L+             G I   IS C  L
Sbjct:   470 PLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLL 529

Query:   427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
             T VD SRN LSGEIP  I+ ++ L+ LNLSRN L G IP  +  M SLT+LD SYNNL+G
Sbjct:   530 TFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSG 589

Query:   487 EVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQH-SHASS-FSTS-KLLITAMAL 543
              VP  G F  F+  SF GNP+LC P    C   +    H SH+    S S KLL+    L
Sbjct:   590 LVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLL 649

Query:   544 VSAL 547
             V ++
Sbjct:   650 VCSI 653

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 244/535 (45%), Positives = 333/535 (62%)

Query:    16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
             L+ LN+S N F   FP ++  G+  L VLD +NNN TG LPV + +L  L+HL  GGNYF
Sbjct:   119 LRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYF 178

Query:    76 SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
             SG+IP +Y     LEYL ++G  L G  P  +  L  LRE+YIGY+N +  G+PPE G L
Sbjct:   179 SGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNL 238

Query:   136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
             S+L   D A+C ++GEIP  + +L+ LD LFLQ+N  TG I  EL  + SL  +DLS N 
Sbjct:   239 SELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNM 298

Query:   196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
              TGE+P SFS LKNL+L+ LF+N L G  P F+G+ P LEVLQ+W NNFTG +P+ LG N
Sbjct:   299 FTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGEN 358

Query:   256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
              +L++LD+SSN++ G +P ++C G RL +LI + N   G IP+ LG CESLT+ R  +N 
Sbjct:   359 GRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENF 418

Query:   316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
             LNG+IP  +F LP L  +EL  N L+GE+P     +S  L Q+ ++ N ++G +P +IGN
Sbjct:   419 LNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGN 478

Query:   375 LTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRN 434
             L+ +  L L  N+F+G +P E+  L+             G I   IS C  LT VD SRN
Sbjct:   479 LSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRN 538

Query:   435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
              LSG+IP  ++ ++ L+ LNLSRN L G IP  +  M SLT++D SYNNL+G VPS G F
Sbjct:   539 ELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQF 598

Query:   495 PAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHASSFS-TSKLLITAMALVSALL 548
               F+  SF GN +LC P    C    +    SH    S T+KLL+    L  +++
Sbjct:   599 SYFNYTSFVGNSHLCGPYLGPCGKGTHQ---SHVKPLSATTKLLLVLGLLFCSMV 650

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 226/498 (45%), Positives = 309/498 (62%)

Query:    16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
             L+VLNIS N F+     +    MT+L  LDA++N+F G LP+ + +L  L+HL  GGNYF
Sbjct:   127 LEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYF 186

Query:    76 SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
              GEIP SY    SL++L L+G  L G  P  L+ +  L ++Y+GY+N Y GGIP +FG L
Sbjct:   187 DGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRL 246

Query:   136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
               L  LD+A+C++ G IPA L  LK L+ LFLQ N+LTG +  EL  + SL  LDLS N 
Sbjct:   247 INLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNF 306

Query:   196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
             L GE+P   S L+ L L  LF N L G  P FV + P+L++L++W NNFTG++P  LG N
Sbjct:   307 LEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSN 366

Query:   256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
               L+ +D+S+N++ G IP  LC G RLK LIL  N   GP+PE+LG CE L +FR  +N 
Sbjct:   367 GNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNF 426

Query:   316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKVAYNNIAGKIPPS 371
             L   +P G+  LP L ++EL +N L+GEIPE    N   S SL Q+ ++ N ++G IP S
Sbjct:   427 LTSKLPKGLIYLPNLSLLELQNNFLTGEIPEEEAGNAQFS-SLTQINLSNNRLSGPIPGS 485

Query:   372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDF 431
             I NL +L +L L  NR +G++P E+ +LK             G+ P     C+SLT +D 
Sbjct:   486 IRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDL 545

Query:   432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
             S N +SG+IP  ISQ+R L+ LN+S N     +P ++  M SLT+ D S+NN +G VP+ 
Sbjct:   546 SHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTS 605

Query:   492 GHFPAFDEASFAGNPNLC 509
             G F  F+  SF GNP LC
Sbjct:   606 GQFSYFNNTSFLGNPFLC 623

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 201/496 (40%), Positives = 303/496 (61%)

Query:    15 SLKVLNISGNGFQDYFPGQIVVGM-TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
             SLKV+++S N F   FP  +  GM T L  ++A +NNF+G LP ++ +   L+ L F G 
Sbjct:   126 SLKVIDVSVNSFFGTFPYGL--GMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGG 183

Query:    74 YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
             YF G +P S+  +++L++LGL+G    G  P  +  L +L  + +GY N + G IP EFG
Sbjct:   184 YFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGY-NGFMGEIPEEFG 242

Query:   134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
              L++L+ LD+A  N++G+IP+SL QLK L  ++L  N+LTG +  EL G+ SL  LDLS 
Sbjct:   243 KLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSD 302

Query:   194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
             N +TGE+P     LKNL L+ L +N L G  PS + + PNLEVL++W N+  G LP +LG
Sbjct:   303 NQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLG 362

Query:   254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
             +N  L  LDVSSN++ G IP  LC    L  LIL  N FSG IPEE+ +C +L + R  K
Sbjct:   363 KNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQK 422

Query:   314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373
             N ++G+IPAG  +LP+L+ +EL  N L+G+IP+++++S SL+ + +++N+++  +  SI 
Sbjct:   423 NHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSS-LSSSIF 481

Query:   374 NLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSR 433
             +  NL      +N F G++P ++ +               G IP  I+    L +++   
Sbjct:   482 SSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKS 541

Query:   434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGH 493
             N L GEIPKA++ +  L++L+LS N LTG IP D+    +L  L++S+N L+G +PS   
Sbjct:   542 NQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNML 601

Query:   494 FPAFDEASFAGNPNLC 509
             F A D     GN  LC
Sbjct:   602 FAAIDPKDLVGNNGLC 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2161158 PXY "PHLOEM INTERCALATED WITH XYLEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 202/494 (40%), Positives = 278/494 (56%)

Query:    16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
             L  L+IS N F   FP  I   +  L+V +AF+NNF G LP ++  L+ L+ L+FGG+YF
Sbjct:   131 LTTLDISRNSFDSSFPPGISK-LKFLKVFNAFSNNFEGLLPSDVSRLRFLEELNFGGSYF 189

Query:    76 SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
              GEIP +Y  +Q L+++ L G  L G  P  L LL  L+ M IGY N + G IP EF  L
Sbjct:   190 EGEIPAAYGGLQRLKFIHLAGNVLGGKLPPRLGLLTELQHMEIGY-NHFNGNIPSEFALL 248

Query:   136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
             S L+  D+++C++SG +P  L  L  L+ LFL  N  TG I    S L SL  LD S N 
Sbjct:   249 SNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQ 308

Query:   196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
             L+G +P  FS LKNL+ + L  NNL G  P  +G+ P L  L +W NNFTG LP  LG N
Sbjct:   309 LSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSN 368

Query:   256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
              KL  +DVS+N   G IP  LC G +L  LIL  N+F G +P+ L  CESL +FR+  N+
Sbjct:   369 GKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEGELPKSLTRCESLWRFRSQNNR 428

Query:   316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL 375
             LNGTIP G  +L  L  ++L +N  + +IP + + +  L  L ++ N    K+P +I   
Sbjct:   429 LNGTIPIGFGSLRNLTFVDLSNNRFTDQIPADFATAPVLQYLNLSTNFFHRKLPENIWKA 488

Query:   376 TNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNS 435
              NL + S   +   GE+P  +   K             G IP  I  C  L  ++ S+N 
Sbjct:   489 PNLQIFSASFSNLIGEIPNYV-GCKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNH 547

Query:   436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP 495
             L+G IP  IS L  ++ ++LS N LTG IP+D     ++TT ++SYN L G +PSG  F 
Sbjct:   548 LNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGS-FA 606

Query:   496 AFDEASFAGNPNLC 509
               + + F+ N  LC
Sbjct:   607 HLNPSFFSSNEGLC 620

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 200/526 (38%), Positives = 285/526 (54%)

Query:     7 SSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTE---LEVLDAFNNNFTGPLPVEIVSLK 63
             S L K    LK ++IS N F     G + +   E   L  L+A  NN +G L  ++ +L 
Sbjct:   109 SLLPKSIPPLKSIDISQNSFS----GSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLV 164

Query:    64 NLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNT 123
             +L+ L   GN+F G +P S+  +Q L +LGL+G  L G  P  L  L +L    +GY N 
Sbjct:   165 SLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGY-NE 223

Query:   124 YTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGL 183
             + G IPPEFG ++ L+ LD+A   +SGEIP+ L +LK L+ L L  N  TG I  E+  +
Sbjct:   224 FKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSI 283

Query:   184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
              +L  LD S N LTGE+P   + LKNL L+ L +N L G  P  +     L+VL++W N 
Sbjct:   284 TTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNT 343

Query:   244 FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGAC 303
              +GELP +LG+N  L  LDVSSN   G+IP  LC    L  LIL  N F+G IP  L  C
Sbjct:   344 LSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTC 403

Query:   304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
             +SL + R   N LNG+IP G   L  L+ +EL  N LSG IP ++S S SL+ +  + N 
Sbjct:   404 QSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQ 463

Query:   364 IAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGC 423
             I   +P +I ++ NL    + +N  +GE+P++  +               G IP+SI+ C
Sbjct:   464 IRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASC 523

Query:   424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
               L +++   N+L+GEIP+ I+ +  L++L+LS N LTG +P  +    +L  L++SYN 
Sbjct:   524 EKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNK 583

Query:   484 LNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQHSHAS 529
             L G VP  G     +     GN  LC      C      A  SH+S
Sbjct:   584 LTGPVPINGFLKTINPDDLRGNSGLCGGVLPPC-SKFQRATSSHSS 628

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 185/495 (37%), Positives = 268/495 (54%)

Query:    15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
             SL+ LN+S N F    P      +  L  LD  NN FTG +  +I    NL+ L  GGN 
Sbjct:   124 SLRYLNLSNNNFSGSIPRGF---LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNV 180

Query:    75 FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
              +G +P     +  LE+L L    L G  PV L  +KNL+ +Y+GY N  +G IP + G 
Sbjct:   181 LTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGY-NNLSGEIPYQIGG 239

Query:   135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
             LS L  LD+   N+SG IP SL  LK L+ +FL  NKL+G I P +  L +L  LD S N
Sbjct:   240 LSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDN 299

Query:   195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
              L+GE+PE  + +++L ++ LF NNL G  P  V   P L+VLQ+W N F+G +P NLG+
Sbjct:   300 SLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGK 359

Query:   255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             +  L +LD+S+N + GK+P  LC    L  LIL  N     IP  LG C+SL + R   N
Sbjct:   360 HNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNN 419

Query:   315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
               +G +P G   L L+  ++L +N L G I  N      L  L ++ N   G++P     
Sbjct:   420 GFSGKLPRGFTKLQLVNFLDLSNNNLQGNI--NTWDMPQLEMLDLSVNKFFGELP-DFSR 476

Query:   375 LTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRN 434
                L  L L  N+ +G +P+ +                 G IP  +S C +L  +D S N
Sbjct:   477 SKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHN 536

Query:   435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
             + +GEIP + ++ + LS L+LS NQL+G IP ++ ++ SL  +++S+N L+G +P  G F
Sbjct:   537 NFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAF 596

Query:   495 PAFDEASFAGNPNLC 509
              A +  +  GN +LC
Sbjct:   597 LAINATAVEGNIDLC 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2207036 AT1G72180 [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 194/556 (34%), Positives = 292/556 (52%)

Query:     5 NWSSLSKPKMS----LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIV 60
             N S    P +S    L  L++  N      P +IV     L+VL+  +N  +G +P  + 
Sbjct:    85 NLSGTISPSISALTKLSTLSLPSNFISGRIPPEIV-NCKNLKVLNLTSNRLSGTIP-NLS 142

Query:    61 SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL-NGIGLNGTAPVFLSLLKNLREMYIG 119
              LK+L+ L   GN+ +GE       +  L  LGL N     G  P  +  LK L  +++ 
Sbjct:   143 PLKSLEILDISGNFLNGEFQSWIGNMNQLVSLGLGNNHYEEGIIPESIGGLKKLTWLFLA 202

Query:   120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE 179
               N  TG IP     L+ L   D+A+  IS + P  +S+L  L  + L  N LTG I PE
Sbjct:   203 RSNL-TGKIPNSIFDLNALDTFDIANNAISDDFPILISRLVNLTKIELFNNSLTGKIPPE 261

Query:   180 LSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQV 239
             +  L  L + D+S N L+G +PE    LK L +    +NN  G FPS  GD  +L  L +
Sbjct:   262 IKNLTRLREFDISSNQLSGVLPEELGVLKELRVFHCHENNFTGEFPSGFGDLSHLTSLSI 321

Query:   240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
             + NNF+GE P N+GR   L  +D+S N+  G  PR LC+ ++L+ L+ +QN FSG IP  
Sbjct:   322 YRNNFSGEFPVNIGRFSPLDTVDISENEFTGPFPRFLCQNKKLQFLLALQNEFSGEIPRS 381

Query:   300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
              G C+SL + R   N+L+G +  G ++LPL KMI+L  N L+GE+   + +S  L+QL +
Sbjct:   382 YGECKSLLRLRINNNRLSGQVVEGFWSLPLAKMIDLSDNELTGEVSPQIGLSTELSQLIL 441

Query:   360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTS 419
               N  +GKIP  +G LTN+  + L NN  +GE+P E+ +LK             G IP  
Sbjct:   442 QNNRFSGKIPRELGRLTNIERIYLSNNNLSGEIPMEVGDLKELSSLHLENNSLTGFIPKE 501

Query:   420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479
             +  C+ L  ++ ++N L+GEIP ++SQ+  L+ L+ S N+LTG IP  +  +  L+ +DL
Sbjct:   502 LKNCVKLVDLNLAKNFLTGEIPNSLSQIASLNSLDFSGNRLTGEIPASLVKL-KLSFIDL 560

Query:   480 SYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPR-----NVTCLPSIYSA-QHSHASSFST 533
             S N L+G +P           +F+ N  LC+ +     N     SI S  Q+   +S   
Sbjct:   561 SGNQLSGRIPPD-LLAVGGSTAFSRNEKLCVDKENAKTNQNLGLSICSGYQNVKRNSSLD 619

Query:   534 SKLLITAMALVSALLI 549
               LL  A+A+V  +L+
Sbjct:   620 GTLLFLALAIVVVVLV 635

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003015501 hypothetical protein (939 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	549
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-115
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-51
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  363 bits (934), Expect = e-115
 Identities = 205/504 (40%), Positives = 296/504 (58%), Gaps = 5/504 (0%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL+ LN+S N F    P   +     LE LD  NN  +G +P +I S  +LK L  GGN 
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
             G+IP S + + SLE+L L    L G  P  L  +K+L+ +Y+GY N  +G IP E G 
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY-NNLSGEIPYEIGG 234

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L+ L  LD+   N++G IP+SL  LK L  LFL  NKL+G I P +  L  L  LDLS N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            L+GE+PE    L+NL ++ LF NN  G  P  +   P L+VLQ+W N F+GE+P+NLG+
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
           +  L +LD+S+N + G+IP  LC    L  LIL  N   G IP+ LGAC SL + R   N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
             +G +P+    LPL+  +++ +N L G I        SL  L +A N   G +P S G+
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
              L  L L  N+F+G +P ++ +L  +  + +S N +SGEIP  +S C  L ++D S N
Sbjct: 475 -KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
            LSG+IP + S++  LS L+LS+NQL+G IP ++ ++ SL  +++S+N+L+G +PS G F
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 495 PAFDEASFAGNPNLCLPRNVTCLP 518
            A + ++ AGN +LC     + LP
Sbjct: 594 LAINASAVAGNIDLCGGDTTSGLP 617

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  193 bits (491), Expect = 8e-53
 Identities = 122/368 (33%), Positives = 198/368 (53%), Gaps = 5/368 (1%)

Query: 125 TGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKL-LDALFLQMNKLTGHIHPELSGL 183
           +G I      L  ++ +++++  +SG IP  +      L  L L  N  TG I     G 
Sbjct: 82  SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGS 138

Query: 184 IS-LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGN 242
           I  L  LDLS N L+GE+P    +  +L ++ L  N L G  P+ + +  +LE L +  N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 243 NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA 302
              G++P  LG+ + L  + +  N + G+IP ++     L  L L+ N  +GPIP  LG 
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYN 362
            ++L      +N+L+G IP  IF+L  L  ++L  N LSGEIPE +    +L  L +  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 363 NIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG 422
           N  GKIP ++ +L  L VL L +N+F+GE+P+ +     ++++++S+NN++GEIP  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 423 CISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482
             +L  +    NSL GEIPK++   R L  + L  N  +G +P++   +  +  LD+S N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 483 NLNGEVPS 490
           NL G + S
Sbjct: 439 NLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  193 bits (491), Expect = 8e-53
 Identities = 121/347 (34%), Positives = 179/347 (51%), Gaps = 30/347 (8%)

Query: 146 CNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPES-F 204
           C   G    + S++  +D   L    ++G I   +  L  +  ++LS N L+G +P+  F
Sbjct: 58  CLWQGITCNNSSRVVSID---LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIF 114

Query: 205 SALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS 264
           +   +L  + L  NN  G  P   G  PNLE L +  N  +GE+P ++G    L +LD+ 
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 265 SNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI 324
            N + GKIP  L     L+ L L  N   G IP ELG          MK+          
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ---------MKS---------- 213

Query: 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384
                LK I L +N LSGEIP  +    SLN L + YNN+ G IP S+GNL NL  L L 
Sbjct: 214 -----LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
            N+ +G +P  +F+L+ +  +++S N++SGEIP  +    +L  +    N+ +G+IP A+
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
           + L  L +L L  N+ +G IP ++    +LT LDLS NNL GE+P G
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  190 bits (483), Expect = 1e-51
 Identities = 124/357 (34%), Positives = 200/357 (56%), Gaps = 3/357 (0%)

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLI-SLTQLDLSLN 194
           S++  +D++  NISG+I +++ +L  +  + L  N+L+G I  ++     SL  L+LS N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
             TG +P     + NL  + L  N L G  P+ +G + +L+VL + GN   G++P +L  
Sbjct: 129 NFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
              L  L ++SNQ+ G+IPR+L + + LK + L  N  SG IP E+G   SL     + N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
            L G IP+ + NL  L+ + L  N LSG IP ++     L  L ++ N+++G+IP  +  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L NL +L L +N F G++P  + +L  + ++ + SN  SGEIP ++    +LT +D S N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
           +L+GEIP+ +    +L  L L  N L G IP  +    SL  + L  N+ +GE+PS 
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 381 LSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI 440
           L L N    G +P ++  L+ +  IN+S N+I G IP S+    SL  +D S NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 441 PKAISQLRDLSILNLSRNQLTGPIP 465
           P+++ QL  L ILNL+ N L+G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 34/88 (38%), Positives = 57/88 (64%)

Query: 335 LDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPE 394
           LD+  L G IP ++S    L  + ++ N+I G IPPS+G++T+L VL L  N FNG +PE
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 395 EMFNLKVISLINVSSNNISGEIPTSISG 422
            +  L  + ++N++ N++SG +P ++ G
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460
            I  + + +  + G IP  IS    L +++ S NS+ G IP ++  +  L +L+LS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 461 TGPIPTDMQDMMSLTTLDLSYNNLNGEVPS--GG---HFPAFDEASFAGNPNLC-LPRNV 514
            G IP  +  + SL  L+L+ N+L+G VP+  GG   H  +F+   F  N  LC +P   
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 515 TCLPSIYSA 523
            C P +   
Sbjct: 536 ACGPHLSVG 544

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 4e-10
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 312 MKNQ-LNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP 370
           + NQ L G IP  I  L  L+ I L  N + G IP +L    SL  L ++YN+  G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 371 SIGNLTNLNVLSLQNNRFNGELP 393
           S+G LT+L +L+L  N  +G +P
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 8/259 (3%)

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
                L    S+     +P  L +   L  L     + S    E L     L       N
Sbjct: 45  VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSP-SGISSLDGSENLLNLLPLPSLDLNLN 103

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
           +L   I   +  L  L  ++LD+N ++ +IP  + +  S  +     +N    +P  + N
Sbjct: 104 RLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRN 161

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L NL  L L  N  + +LP+ + NL  ++ +++S N IS ++P  I    +L  +D S N
Sbjct: 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
           S+  E+  ++S L++LS L LS N+L   +P  + ++ +L TLDLS NN    + S G  
Sbjct: 220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS-NNQISSISSLGSL 276

Query: 495 PAFDEASFAGNPNLCLPRN 513
               E   +GN        
Sbjct: 277 TNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 92  LGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE 151
           LGL+  GL G  P  +S L++L+ + +   N+  G IPP  G+++ L VLD++  + +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 152 IPASLSQLKLLDALFLQMNKLTGHIHPELSGL 183
           IP SL QL  L  L L  N L+G +   L G 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query: 150 GEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKN 209
           G IP  +S+L+ L ++ L  N + G+I P L  + SL  LDLS N   G +PES   L +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 210 LSLVQLFKNNLRGPFPSFVGDYP 232
           L ++ L  N+L G  P+ +G   
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query: 261 LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320
           L + +  + G IP D+ K   L+S+ L  N   G IP  LG+  SL       N  NG+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 321 PAGIFNLPLLKMIELDHNLLSGEIPENL 348
           P  +  L  L+++ L+ N LSG +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 30/85 (35%), Positives = 50/85 (58%)

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
           L L    L G +P   S L++L  + L  N++RG  P  +G   +LEVL +  N+F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 249 PENLGRNRKLLLLDVSSNQIEGKIP 273
           PE+LG+   L +L+++ N + G++P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 30/84 (35%), Positives = 42/84 (50%)

Query: 246 GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACES 305
           G +P ++ + R L  +++S N I G IP  L     L+ L L  N F+G IPE LG   S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPL 329
           L       N L+G +PA +    L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 25/119 (21%)

Query: 48  NNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFL 107
           N    G +P +I  L++L+ ++  GN   G IP S   I SLE L L+            
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS------------ 474

Query: 108 SLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
                        +N++ G IP   G L+ LR+L++   ++SG +PA+L    L  A F
Sbjct: 475 -------------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDLCK-GERLKSLILMQNLFSGPIPEELGACESLTKF 309
            L     L  LD+ +N I   IP  +      LK L L  N     +P  L    +L   
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
               N L+  +P  + NL  L  ++L  N +S ++P  + +  +L +L ++ N+I  ++ 
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELL 225

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
            S+ NL NL+ L L NN+   +LPE + NL  +  +++S+N IS    +S+    +L  +
Sbjct: 226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLREL 282

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
           D S NSLS  +P     L  L +L      L 
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 29/83 (34%), Positives = 43/83 (51%)

Query: 220 LRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG 279
           LRG  P+ +    +L+ + + GN+  G +P +LG    L +LD+S N   G IP  L + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 280 ERLKSLILMQNLFSGPIPEELGA 302
             L+ L L  N  SG +P  LG 
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 29/93 (31%), Positives = 49/93 (52%)

Query: 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNL 220
            +D L L    L G I  ++S L  L  ++LS N + G +P S  ++ +L ++ L  N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 221 RGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
            G  P  +G   +L +L + GN+ +G +P  LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 28/82 (34%), Positives = 41/82 (50%)

Query: 126 GGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS 185
           G IP +   L  L+ ++++  +I G IP SL  +  L+ L L  N   G I   L  L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 186 LTQLDLSLNCLTGEVPESFSAL 207
           L  L+L+ N L+G VP +    
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 23/80 (28%), Positives = 44/80 (55%)

Query: 294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353
           G IP ++     L       N + G IP  + ++  L++++L +N  +G IPE+L    S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 354 LNQLKVAYNNIAGKIPPSIG 373
           L  L +  N+++G++P ++G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 4   DNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLK 63
           ++ S L      L+ +N+SGN  +   P  +   +T LEVLD   N+F G +P  +  L 
Sbjct: 436 NDISKLRH----LQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 64  NLKHLSFGGNYFSGEIPES 82
           +L+ L+  GN  SG +P +
Sbjct: 491 SLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 19  LNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE 78
           L +   G + + P  I   +  L+ ++   N+  G +P  + S+ +L+ L    N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 79  IPESYSEIQSLEYLGLNGIGLNGTAP 104
           IPES  ++ SL  L LNG  L+G  P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +L ++D S N L+     A   L +L +L+LS N LT   P     + SL +LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 57/292 (19%)

Query: 232 PNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQIEGKIPRD-------LCKGE 280
             L+VL++ GN    E    L   L     L  L +S N+  G+IPR        L KG 
Sbjct: 23  LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGC 81

Query: 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG-------TIPAGIFNLPL-LKM 332
            L+ L L  N         L +    +  + +K   NG        +  G+ +LP  L+ 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 333 IELDHNLLSGE----IPENLSISDSLNQLKVAYNNIAG----KIPPSIGNLTNLNVLSLQ 384
           + L  N L G     + + L  +  L +L +A N I       +   +    NL VL L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 385 NNRFNGE----LPEEMFNLKVISLINVSSNNISGEI-----PTSISGCISLTTVDFSRNS 435
           NN    E    L E + +LK + ++N+  NN++           +S  ISL T+  S N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
           ++ +  K ++++                    + +  SL  LDL  N    E
Sbjct: 262 ITDDGAKDLAEV--------------------LAEKESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 64/267 (23%), Positives = 101/267 (37%), Gaps = 48/267 (17%)

Query: 159 LKLLDALFLQMNKLTGHIHPELSGLIS---LTQLDLSLNCLTGEVPESFSALKNLSLVQL 215
           LK L     +  ++   +   L GL     L +LDLS N L  +      +L   S +Q 
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112

Query: 216 FK--NNLRGPFP-SFVGD-----YPNLEVLQVWGNNFTGELPENLGR----NRKLLLLDV 263
            K  NN  G      +        P LE L +  N   G   E L +    NR L  L++
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172

Query: 264 SSNQIEGKIPRDLCKGER----LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT 319
           ++N I     R L +G +    L+ L L  N        + GA           + L  T
Sbjct: 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-----TDEGA-----------SALAET 216

Query: 320 IPAGIFNLPLLKMIELDHNLLSGEI-----PENLSISDSLNQLKVAYNNI----AGKIPP 370
           +     +L  L+++ L  N L+           LS + SL  L ++ N+I    A  +  
Sbjct: 217 LA----SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272

Query: 371 SIGNLTNLNVLSLQNNRFNGELPEEMF 397
            +    +L  L L+ N+F  E  + + 
Sbjct: 273 VLAEKESLLELDLRGNKFGEEGAQLLA 299

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 377 NLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
           NL  L L NNR    +P+  F  L  + ++++S NN++   P + SG  SL ++D S N+
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 436 L 436
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLN 194
            L+ LD+++  ++     +   L  L  L L  N LT  I PE  SGL SL  LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 398 NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
           NLK + L   S+N ++     +  G  +L  +D S N+L+   P+A S L  L  L+LS 
Sbjct: 1   NLKSLDL---SNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 458 NQL 460
           N L
Sbjct: 58  NNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	549
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
PLN03150	623	hypothetical protein; Provisional	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
PLN03150	623	hypothetical protein; Provisional	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG4341	483	consensus F-box protein containing LRR [General fu	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.7
KOG4341	483	consensus F-box protein containing LRR [General fu	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.13
KOG4308	478	consensus LRR-containing protein [Function unknown	92.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.47
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.57
KOG4308	478	consensus LRR-containing protein [Function unknown	90.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.62
smart00370	26	LRR Leucine-rich repeats, outliers.	89.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.77
smart00370	26	LRR Leucine-rich repeats, outliers.	88.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.1
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	81.53

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-57  Score=498.94  Aligned_cols=500  Identities=37%  Similarity=0.611  Sum_probs=342.1

Q ss_pred             cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055            9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS   88 (549)
Q Consensus         9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~   88 (549)
                      .+..+++|++|+|++|.+.+.+|..++..+++|++|++++|.+++.+|.  ..+++|++|++++|.+.+..|..+.++++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            3556788888888888887777877776777777777777777654442  34555555555555555555555555666


Q ss_pred             CCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEecc
Q 046055           89 LEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQ  168 (549)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  168 (549)
                      |++|++++|.+.+..|..++++++|++|++++ +.+.+..|..++++++|++|++++|.+++..|..+..+++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS-NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccC-CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            66666666555555555555555566665555 44444455555555555555555555555555555555555555555


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCcc---------------------
Q 046055          169 MNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF---------------------  227 (549)
Q Consensus       169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------------------  227 (549)
                      +|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..                     
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence            55554444444555555555555555544444444444455555555554444444444                     


Q ss_pred             ---CCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCC
Q 046055          228 ---VGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE  304 (549)
Q Consensus       228 ---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  304 (549)
                         +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++++.|++++|.+.+..+..+..++
T Consensus       325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  404 (968)
T PLN00113        325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR  404 (968)
T ss_pred             ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence               44444555555555544444444444455555555555555444444555555555555555555555555566666


Q ss_pred             CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055          305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ  384 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  384 (549)
                      +|+.+++.+|++.+..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|+++
T Consensus       405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls  483 (968)
T PLN00113        405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS  483 (968)
T ss_pred             CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence            77777777777666666666677777777777777776666666667777777777777776666554 35788889999


Q ss_pred             CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055          385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      +|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+
T Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence            99888888888889999999999999999889999999999999999999999999999999999999999999999889


Q ss_pred             CccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCC
Q 046055          465 PTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPR  512 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~  512 (549)
                      |..+..+++|+.+++++|++.+.+|..+.+.++....+.||+.+|...
T Consensus       564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.2e-55  Score=481.71  Aligned_cols=505  Identities=33%  Similarity=0.543  Sum_probs=422.4

Q ss_pred             CCCcccccc-CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccc-cCCCCcCEEEccCCcceeccC
Q 046055            3 FDNWSSLSK-PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGNYFSGEIP   80 (549)
Q Consensus         3 ~~~~~~~~~-~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~   80 (549)
                      ++.|.++.. ...+++.|+|+++.+.+..+..+. .+++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+..|
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  135 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP  135 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccccCChHHh-CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC
Confidence            456766544 356899999999999887776655 99999999999999987777765 489999999999999987777


Q ss_pred             ccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCC
Q 046055           81 ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLK  160 (549)
Q Consensus        81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~  160 (549)
                      .  ..+++|++|++++|.+.+..|..++++++|++|++++ +.+.+..|..++++++|++|++++|.+.+..|..+..++
T Consensus       136 ~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (968)
T PLN00113        136 R--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK  212 (968)
T ss_pred             c--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence            4  5688999999999999989999999999999999998 777778899999999999999999999988999999999


Q ss_pred             CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055          161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW  240 (549)
Q Consensus       161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  240 (549)
                      +|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            99999999999998888889999999999999999988889999999999999999999988888888899999999999


Q ss_pred             CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055          241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI  320 (549)
Q Consensus       241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  320 (549)
                      +|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+.+
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence            99998888888889999999999999998888888888899999999999888777777888888888888888877666


Q ss_pred             CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc--
Q 046055          321 PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN--  398 (549)
Q Consensus       321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--  398 (549)
                      |..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++..+..  
T Consensus       373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence            666666666666666666666555555555566666666666665555555555555555555555544444333322  


Q ss_pred             ---------------------CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055          399 ---------------------LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR  457 (549)
Q Consensus       399 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  457 (549)
                                           .++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  532 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH  532 (968)
T ss_pred             CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence                                 35667777777777777777888889999999999999888888999999999999999


Q ss_pred             CcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCC
Q 046055          458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       458 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~  511 (549)
                      |.+++.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|+..+..
T Consensus       533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            9999889999999999999999999999887764 67889999999999987533

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=312.06  Aligned_cols=387  Identities=23%  Similarity=0.193  Sum_probs=331.1

Q ss_pred             CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055          137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF  216 (549)
Q Consensus       137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  216 (549)
                      .-+.|++++|.+....+..|.++++|+++++..|.+. .+|.......+++.|++.+|.|+.+..+.++.++.|+.++|+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4567888888888777788888999999999988887 455555556679999999999888878888888999999999


Q ss_pred             cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      .|.+.......+..-+++++|++++|.++......|..+.+|..|.++.|+++...+..|..++.|+.|++..|.+....
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            99888655555555678999999999998777778888889999999999998655666666899999999999888666


Q ss_pred             CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                      .-.|.++++|+.+.+..|.+...-...|+.+.++++|+++.|++......++.++.+|+.|++++|.|...-+..+..++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            67889999999999999999877778888999999999999999988777888899999999999999988888899999


Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc---hhhhhCCCCCCEE
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI---PKAISQLRDLSIL  453 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~~~~L~~L  453 (549)
                      +|++|++++|+++...++.|..+..|++|+++.|++......+|..+++|+.|||++|.+...+   ...|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            9999999999999777888999999999999999998777788999999999999999987543   3457889999999


Q ss_pred             ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccccC
Q 046055          454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIYSAQ  524 (549)
Q Consensus       454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~  524 (549)
                      ++.+|++..+.-.+|.++++|+.|||.+|.|...-|.+-.-..|+++.+..-.++|+|+..+..+|++.+.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRK  468 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence            99999999677779999999999999999999777766433489999999999999999987777766543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-39  Score=301.90  Aligned_cols=368  Identities=20%  Similarity=0.202  Sum_probs=234.9

Q ss_pred             CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055           90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM  169 (549)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  169 (549)
                      +.|++++|.+....+..|.++++|+++++.+ |.++ .+|..-+...+++.|++.+|.|+....+.+..++.|+.|+++.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeecc-chhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            3455555555555555555555555555554 3332 3343333334466666666666555555555566666666666


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055          170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP  249 (549)
Q Consensus       170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  249 (549)
                      |.+..+....|..-.++++|++++|+|+......|.++.+|..|.|+.|+++...+..|..++.|+.|++..|.+...-.
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            66665555555555566666666666665555556666666666666666665555555556666666666665553323


Q ss_pred             ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCC
Q 046055          250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL  329 (549)
Q Consensus       250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  329 (549)
                      -.|.++++|+.|.+..|++...-++.|+.+..+++|++..|.+..+....+-+++.|+.|+++.|.|...-++....+++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence            44555666666666666665555555666666666666666666555555666666666666666666555566667777


Q ss_pred             CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC---ccccccCCCCCEEE
Q 046055          330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL---PEEMFNLKVISLIN  406 (549)
Q Consensus       330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  406 (549)
                      |++|++++|.++...+..|..+..|++|.|+.|++...-...|..+++|++||+++|.+...+   ...|.++++|+.|+
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            777777777777777777777777888888888877666667777788888888888765433   23466778888888


Q ss_pred             ccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055          407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i  460 (549)
                      +.||++..+...+|.++++|++|+|.+|.|..+.+++|..+ .|++|.+..-.+
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            88888775556678888888888888888877777777777 777777665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.9e-41  Score=300.06  Aligned_cols=477  Identities=26%  Similarity=0.361  Sum_probs=357.5

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      ..++.+++++|.+.. +-.++. .+..+.+|++++|++. ..|.+++.+..++.++.++|.+. .+|..+..+.+|..++
T Consensus        45 v~l~~lils~N~l~~-l~~dl~-nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLK-NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhh-cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            467778888888765 344444 7788888888888888 67888888888888888888887 7888888888888888


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT  173 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~  173 (549)
                      +++|.+. ..++.++.+..+..++..+ +.+. ..|+.+..+.++..+++.+|.+....+..+. ++.|++++...|-+.
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~-N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATN-NQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccc-cccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence            8887766 4456777888888888876 4443 4677788888888888888888744444444 888888888888776


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCcccc
Q 046055          174 GHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG  253 (549)
Q Consensus       174 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  253 (549)
                       ..|..++.+.+|+.|++..|.+. ..| .|.+|..|++++.+.|.+.....+...+++++..|++.+|+++ ..|+.+.
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence             56677888888888888888887 556 6788888888888888887444444557888888888888888 6777777


Q ss_pred             CCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccC-----CCCCcEE----Ecc---CCcCc-ccC
Q 046055          254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA-----CESLTKF----RAM---KNQLN-GTI  320 (549)
Q Consensus       254 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L----~l~---~~~l~-~~~  320 (549)
                      -+.+|..||+++|.++ ..|..++++ .|+.|.+.+|.+..+-.+.+..     +++|+.-    .++   +..-+ ...
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            7788888888888887 456677777 8888888888765321111100     1111110    000   00000 011


Q ss_pred             Cc----cCCCCCCCCEEEeecCcCccccCccccC--CCCCCEEEccCceecccCCcccccCCCCC-EEEccCCcCCCCCc
Q 046055          321 PA----GIFNLPLLKMIELDHNLLSGEIPENLSI--SDSLNQLKVAYNNIAGKIPPSIGNLTNLN-VLSLQNNRFNGELP  393 (549)
Q Consensus       321 ~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~  393 (549)
                      +.    .....-+.++|++++-+++.++.+.|..  ..-....++++|++. .+|..+..+..+. .+.+++|.+. .+|
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~  428 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP  428 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch
Confidence            11    1223456888999988888554444422  234778899999998 5666665555544 4666666665 788


Q ss_pred             cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCC
Q 046055          394 EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMS  473 (549)
Q Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~  473 (549)
                      ..+..+++|+.|++++|.+. .+|..+..+..|+.|+++.|++. ..|.++..+..+|.+-.++|++....++.+.++.+
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            88889999999999999887 78888888889999999999998 78999888889999999999999777777999999


Q ss_pred             CCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCC
Q 046055          474 LTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL  508 (549)
Q Consensus       474 L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~  508 (549)
                      |..||+.+|.+...+|..|++.+++++.++|||+.
T Consensus       507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            99999999999988888999999999999999976

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.8e-40  Score=294.01  Aligned_cols=460  Identities=26%  Similarity=0.371  Sum_probs=373.0

Q ss_pred             ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055           10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL   89 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L   89 (549)
                      ..++..+.+|++.+|++.. .|..+. .+..++.++.++|++. .+|+.+..+..|+.+++++|.+. .+|+.+..+..|
T Consensus        64 l~nL~~l~vl~~~~n~l~~-lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQ-LPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hhcccceeEEEeccchhhh-CCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            4567889999999999976 787787 8889999999999999 79999999999999999999998 888899999999


Q ss_pred             CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055           90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM  169 (549)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  169 (549)
                      +.++..+|++. ..|.++.++.++..+++.+ +...... +..-.++.|+++++..|.++ ..|..++.+.+|+-|++..
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~-n~l~~l~-~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEG-NKLKALP-ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccc-cchhhCC-HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence            99999999988 5678888999999999988 6665444 44445999999999999887 7888999999999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCccccCc-cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccC
Q 046055          170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPE-SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL  248 (549)
Q Consensus       170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  248 (549)
                      |++... | .|.++..|+++.++.|++. ..|+ ...++.++..|++.+|++. ..|..+.-+.+|..|++++|.++ ..
T Consensus       216 Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L  290 (565)
T KOG0472|consen  216 NKIRFL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL  290 (565)
T ss_pred             cccccC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC
Confidence            999844 3 7999999999999999998 4454 4458999999999999998 67777778899999999999999 78


Q ss_pred             CccccCCCCccEEECcCCcccccCCccccCCC---CccEEe-------cccccccc--------CCCccccCCCCCcEEE
Q 046055          249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGE---RLKSLI-------LMQNLFSG--------PIPEELGACESLTKFR  310 (549)
Q Consensus       249 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~-------l~~~~~~~--------~~~~~~~~~~~L~~L~  310 (549)
                      |..++++ +|+.|-+.+|.+.. +...+-+..   -|++|.       ++...-+.        ..........+.+.|+
T Consensus       291 p~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             Ccccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            8889998 99999999998752 112221111   111111       11111100        0011223344677888


Q ss_pred             ccCCcCcccCCccCCCCCC---CCEEEeecCcCccccCccccCCCCCC-EEEccCceecccCCcccccCCCCCEEEccCC
Q 046055          311 AMKNQLNGTIPAGIFNLPL---LKMIELDHNLLSGEIPENLSISDSLN-QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN  386 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~---L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  386 (549)
                      +++-+++ .+|..++....   ...++++.|++. ..|..+..+..+. .+.+++|.+. ..|..++.+++|+.|++++|
T Consensus       369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccc
Confidence            8888887 67766654444   889999999998 4555555544444 4566666666 78888999999999999999


Q ss_pred             cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055          387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT  466 (549)
Q Consensus       387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  466 (549)
                      .+. .+|..++.+..|+.|+++.|++. ..|.++.....++.+-.++|++....++.+.++.+|..||+.+|.+. .+|.
T Consensus       446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence            887 88999999999999999999998 78888888888888888889999777888999999999999999999 7788


Q ss_pred             cccCCCCCCeEeCCCCCCcccCCCC
Q 046055          467 DMQDMMSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       467 ~l~~l~~L~~L~l~~n~~~~~~p~~  491 (549)
                      .++++++|++|++++|++. .++..
T Consensus       523 ~LgnmtnL~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  523 ILGNMTNLRHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             hhccccceeEEEecCCccC-CCHHH
Confidence            8999999999999999999 55554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=293.09  Aligned_cols=465  Identities=27%  Similarity=0.357  Sum_probs=300.8

Q ss_pred             ccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEcc
Q 046055           16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLN   95 (549)
Q Consensus        16 L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~   95 (549)
                      ++.|+++.|.+.. .|-.+..++-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.+.
T Consensus        23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhcccccccc-CchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            6777777777654 34444556666888888888887 57777888888888888888877 667777788888888888


Q ss_pred             CCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccccc
Q 046055           96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH  175 (549)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~  175 (549)
                      +|... ..|..+..+++|+.|++++ +.+. ..|..+..++.+..+..++|.....    ++... ++.+++..+.+.+.
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~-N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~  171 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSF-NHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS  171 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccch-hccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence            76655 5677788888888888886 4443 4556666667777777777621111    12111 55666666666555


Q ss_pred             CCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCC
Q 046055          176 IHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN  255 (549)
Q Consensus       176 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  255 (549)
                      ...++..+.+  .+++++|.+..   ..+..+.+|+.+....|++...    ...-++++.|+.++|.++...+  -...
T Consensus       172 ~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p  240 (1081)
T KOG0618|consen  172 FLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVP  240 (1081)
T ss_pred             hhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--cccc
Confidence            4455555444  57777777651   2445667777777777766522    1134677777777777763222  2234


Q ss_pred             CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055          256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL  335 (549)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  335 (549)
                      .+|++++++.|++. .+|.++..+.+|+.+....|.+. ..+..+....+|+.+.+..|.+. .+|......++|++|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            56777777777776 34577777777777777777774 44455566667777777777776 56665666777777777


Q ss_pred             ecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc
Q 046055          336 DHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG  414 (549)
Q Consensus       336 ~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (549)
                      ..|++....+..+.... +++.|..+.|++.......=..++.|+.|.+.+|.+++...+.+.+.++|+.|++++|++..
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            77777633332222222 35566666666553222222345567777777777766655566677777777777777764


Q ss_pred             cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCC
Q 046055          415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF  494 (549)
Q Consensus       415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~  494 (549)
                      .....+.++..|++|+||+|+++ .+|+....++.|+.|...+|++. ..| .+..++.|+.+|++.|.+....-.....
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            44445667777777777777776 55666777777777777777777 555 4666777777777777776432222222


Q ss_pred             -CCCCccccCCCCCC
Q 046055          495 -PAFDEASFAGNPNL  508 (549)
Q Consensus       495 -~~l~~l~l~~n~~~  508 (549)
                       |.|+.++++||+++
T Consensus       475 ~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CcccceeeccCCccc
Confidence             67777777777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-34  Score=281.61  Aligned_cols=446  Identities=26%  Similarity=0.327  Sum_probs=346.3

Q ss_pred             ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055           10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL   89 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L   89 (549)
                      +++.-+|++||+++|.+.. .|..+- .+.+|+.|.++.|.|. ..|.+..++++|+++.|..|... .+|..+..+++|
T Consensus        41 ~~~~v~L~~l~lsnn~~~~-fp~~it-~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl  116 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQISS-FPIQIT-LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL  116 (1081)
T ss_pred             hhheeeeEEeecccccccc-CCchhh-hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence            3445569999999999865 777777 7899999999999998 68888999999999999999887 899999999999


Q ss_pred             CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055           90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM  169 (549)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  169 (549)
                      ++|++++|.+. ..|..+..+..+..+..++ |....    .++.. ..+.+++..+.+.+.++..+..++.  .+++.+
T Consensus       117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~-N~~~~----~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~  187 (1081)
T KOG0618|consen  117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASN-NEKIQ----RLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY  187 (1081)
T ss_pred             cccccchhccC-CCchhHHhhhHHHHHhhhc-chhhh----hhccc-cchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence            99999999877 5677888888888888887 42222    22232 2788888888887777777766666  689999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055          170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP  249 (549)
Q Consensus       170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  249 (549)
                      |.+. +  ..+..+++|+.+....|+++...    -.-++++.|...+|.+....+..  ...++++++++.+.+. .+|
T Consensus       188 N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp  257 (1081)
T KOG0618|consen  188 NEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP  257 (1081)
T ss_pred             chhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cch
Confidence            9887 2  45677888899888888876322    12378888888888887443322  2468899999999988 677


Q ss_pred             ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCC-CC
Q 046055          250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFN-LP  328 (549)
Q Consensus       250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~  328 (549)
                      .++..+.+|+.+++.+|.+. ..|..+....+|+.+....|.+.. .+......+.|++|++..|.+. ..|..+.. ..
T Consensus       258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~  334 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN  334 (1081)
T ss_pred             HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhh
Confidence            88888999999999999885 667777788889999888888874 4456677889999999999887 55543332 22


Q ss_pred             -CCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEc
Q 046055          329 -LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINV  407 (549)
Q Consensus       329 -~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (549)
                       +++.+..+.+++.......-.....|+.|++.+|.+++...+.+.++++|+.|++++|++.......+.+++.|++|++
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence             2666777777765332212223567888999999998887778888899999999999887344455678889999999


Q ss_pred             cCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055          408 SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL  484 (549)
Q Consensus       408 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  484 (549)
                      +||+++ .+|..+..++.|++|...+|.+. ..| .+..++.|+.+|++.|+++......-..-|.|++||+++|.-
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999988 67788888999999999999987 667 678889999999999998755333233337899999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.8e-33  Score=264.54  Aligned_cols=368  Identities=26%  Similarity=0.346  Sum_probs=228.6

Q ss_pred             cCCCcccEEEccCCCCC-CcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055           11 KPKMSLKVLNISGNGFQ-DYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL   89 (549)
Q Consensus        11 ~~~~~L~~L~Ls~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L   89 (549)
                      +-++-+|-+|+++|.+. +..|.++- .+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence            44566666777777765 34455444 6666666666666666 56666666666666666666655 333345555556


Q ss_pred             CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055           90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM  169 (549)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  169 (549)
                      +.+.++.|++.                        ...+|..+.++..|.+|+++.|.++ +.|..+..-+++-.|++++
T Consensus        81 Rsv~~R~N~LK------------------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   81 RSVIVRDNNLK------------------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY  135 (1255)
T ss_pred             HHHhhhccccc------------------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc
Confidence            66555555443                        2344555556666667777777666 5666666666677777777


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcccc-ccC
Q 046055          170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT-GEL  248 (549)
Q Consensus       170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~  248 (549)
                      |+|..+...-|.++..|-.||+++|++. .+|.....+.+|++|.+++|++.-.-...+..+.+|+.|++++++-+ ..+
T Consensus       136 N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  136 NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence            7776666666666666777777777766 45555666667777777777655322223344666677777766543 245


Q ss_pred             CccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCC
Q 046055          249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP  328 (549)
Q Consensus       249 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  328 (549)
                      |..+..+.+|+.+|++.|.+. ..|..++.+++|+.|++++|.++.. ......-.++++|+++.|+++ .+|..+..++
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            666777777777777777776 5677777777777777777776632 122333445666666666666 6666666666


Q ss_pred             CCCEEEeecCcCccc-cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEc
Q 046055          329 LLKMIELDHNLLSGE-IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINV  407 (549)
Q Consensus       329 ~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (549)
                      .|+.|...+|++.-. +|..++.+..|+.+...+|.+. ..|+.+++|..|+.|.++.|++. ..|+.+.-++.|+.||+
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence            666666666665422 3445555566666666666655 56666666666666666666665 56666666666666666


Q ss_pred             cCCcc
Q 046055          408 SSNNI  412 (549)
Q Consensus       408 ~~n~l  412 (549)
                      ..|+-
T Consensus       370 reNpn  374 (1255)
T KOG0444|consen  370 RENPN  374 (1255)
T ss_pred             cCCcC
Confidence            66653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9e-33  Score=261.98  Aligned_cols=369  Identities=25%  Similarity=0.340  Sum_probs=226.6

Q ss_pred             CCEEEccCCCCc-cccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEec
Q 046055           89 LEYLGLNGIGLN-GTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFL  167 (549)
Q Consensus        89 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l  167 (549)
                      .+-.++++|.++ ...|.....+++++.|.+.. . .-..+|+.++.+.+|++|.++.|.+. .+...+..++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t-~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-T-KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEech-h-hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence            344556666555 34455555555666555543 1 12344555555555666655555554 33444555555555555


Q ss_pred             cCcccccc-CCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc
Q 046055          168 QMNKLTGH-IHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG  246 (549)
Q Consensus       168 ~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  246 (549)
                      .+|++... +|..+..+..|+.||+++|++. ..|..+...+++-.|++++|+|.++....+.++..|-.|++++|.+. 
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence            55555432 3344455555555555555555 34444555555555555555555444444444555555555555554 


Q ss_pred             cCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCc-ccCCccCC
Q 046055          247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN-GTIPAGIF  325 (549)
Q Consensus       247 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~  325 (549)
                      .+|+....+..|++|++++|.+.                        ......+..+++|+.|.+++.+-+ ..+|..+.
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~------------------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLN------------------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhh------------------------HHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            34444445555555555555443                        222223333444444444444222 24666666


Q ss_pred             CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055          326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI  405 (549)
Q Consensus       326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (549)
                      .+.+|..+|++.|.+. ..|+.+...++|+.|++++|.++ .+....+.+.+|++|+++.|+++ ..|.++..+++|+.|
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            7777777888777776 56667777777888888888877 34444556677888888888887 778888888888888


Q ss_pred             EccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055          406 NVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL  484 (549)
Q Consensus       406 ~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  484 (549)
                      ...+|+++- -+|..+..+.+|+++..++|.+. ..|+++..+..|+.|.++.|++. .+|+.+.-++.|+.||++.|+-
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            888887652 25667777788888888888876 77888888888888888888877 6777788888888888888877


Q ss_pred             cccCCCC
Q 046055          485 NGEVPSG  491 (549)
Q Consensus       485 ~~~~p~~  491 (549)
                      ...+|..
T Consensus       375 LVMPPKP  381 (1255)
T KOG0444|consen  375 LVMPPKP  381 (1255)
T ss_pred             ccCCCCc
Confidence            6555543

>PLN03210 Resistant to P

Probab=99.92  E-value=8.8e-23  Score=225.52  Aligned_cols=341  Identities=20%  Similarity=0.222  Sum_probs=219.4

Q ss_pred             ccccCCCCCCEEEccCccC------CccCCccccCC-CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCc
Q 046055          130 PEFGTLSKLRVLDMASCNI------SGEIPASLSQL-KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPE  202 (549)
Q Consensus       130 ~~~~~~~~L~~L~l~~~~i------~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  202 (549)
                      .+|.++++|+.|.+..+..      ....|..+..+ ++|+.|.+.++.+.. .|..+ ...+|++|++.++.+. ..+.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-cccc
Confidence            3455666666666644321      11234444444 346677766666653 33333 3456777777777665 3445


Q ss_pred             cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCc
Q 046055          203 SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERL  282 (549)
Q Consensus       203 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  282 (549)
                      .+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            556667777777776554334443 5556777777777766555666667777777777777764443445433 56677


Q ss_pred             cEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcc-------ccCccccCCCCCC
Q 046055          283 KSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG-------EIPENLSISDSLN  355 (549)
Q Consensus       283 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~L~  355 (549)
                      +.|++++|......+.   ...+|+.|++.++.+. .+|..+ .+++|++|.+.++....       ..+.....+++|+
T Consensus       707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence            7777777654433332   2356777777777765 455433 46777777776643211       1111223356788


Q ss_pred             EEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCc
Q 046055          356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS  435 (549)
Q Consensus       356 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  435 (549)
                      .|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|..   ..+|+.|++++|.
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~  857 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG  857 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC
Confidence            88888887766778888888888888888886544666655 6788888888888654444432   3578888888888


Q ss_pred             CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      ++ .+|..+..+++|+.|++++|+--..++..+..+++|+.+++++|.-.
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            87 67778888888888888886544356667777888888888888644

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=2e-22  Score=222.67  Aligned_cols=346  Identities=21%  Similarity=0.241  Sum_probs=158.5

Q ss_pred             CccccCCCCCCEEEccCCCC------ccccchhccCC-CCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccC
Q 046055           80 PESYSEIQSLEYLGLNGIGL------NGTAPVFLSLL-KNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI  152 (549)
Q Consensus        80 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  152 (549)
                      +.+|.++++|+.|.+..+..      ....|..+..+ .+|+.|.+.+ +.+ ..+|..| ...+|+.|++.++.+. ..
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPL-RCMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC-CCC-CCCCCcC-CccCCcEEECcCcccc-cc
Confidence            34456666666666644321      12233334333 2455555554 222 2334444 3456666666666554 34


Q ss_pred             CccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCC
Q 046055          153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYP  232 (549)
Q Consensus       153 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  232 (549)
                      +..+..+++|+.++++++......+ .+..+++|++|++++|......|..+..+++|+.|++.+|.....+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            4445556666666665543222222 34555566666666554333455555556666666666554333444333 455


Q ss_pred             CccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEcc
Q 046055          233 NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAM  312 (549)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  312 (549)
                      +|+.|++++|......|..   .++|+.|+++++.+. .+|..+ .+++|++|.+.++.......               
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~---------------  764 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE---------------  764 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc---------------
Confidence            6666666665433333321   244555666655554 233222 34455555554422110000               


Q ss_pred             CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC
Q 046055          313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL  392 (549)
Q Consensus       313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  392 (549)
                        .+....+.....+++|+.|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+
T Consensus       765 --~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        765 --RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             --cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence              0000001111123445555555554444444444455555555555543333333332 3445555555554332233


Q ss_pred             ccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          393 PEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      |..   ..+|+.|++++|.+. .+|..+..+++|+.|++++|.-...+|.....+++|+.+++++|
T Consensus       842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            321   234555555555554 34444455555555555554333234444444555555555555

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-25  Score=199.69  Aligned_cols=147  Identities=19%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             EccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC-CC
Q 046055           20 NISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG-IG   98 (549)
Q Consensus        20 ~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~-~~   98 (549)
                      +-++..+.. +|.++.   +.-..++|..|+|+...+.+|+.+++||.||||+|.|+.+-|++|..+++|..|-+.+ |+
T Consensus        52 dCr~~GL~e-VP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLTE-VPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCccc-CcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            334444432 444333   3556677777777766666677777777777777777766677777777766666655 66


Q ss_pred             CccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc
Q 046055           99 LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK  171 (549)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  171 (549)
                      ++......|+++..|+.|.+.- +.+.....+.|..++++..|.+-+|.+.......|..+..++.+.+..|.
T Consensus       128 I~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            6666556666676666666654 44444445566666666666666666653333356666666666665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-24  Score=195.93  Aligned_cols=421  Identities=20%  Similarity=0.211  Sum_probs=253.4

Q ss_pred             EEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCcc
Q 046055           43 VLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN  122 (549)
Q Consensus        43 ~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  122 (549)
                      .++-++-.++ ++|..+-  +.-..++|..|.|+.+.+.+|+.+++|+.|++++|.++.+.|++|..+.+|-.|.+.+++
T Consensus        50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            4555666666 5665443  356788899999997777899999999999999999999999999999999999887767


Q ss_pred             ccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCcc----
Q 046055          123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG----  198 (549)
Q Consensus       123 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----  198 (549)
                      .++......|+++..++.|.+.-|++.-...+.|..++++..|.+.+|.+..+....|.++.+++.+.+..|.+..    
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            7877777789999999999999999887777889999999999999999887766788888888888888776321    


Q ss_pred             --------ccCccccCCCcCceeecccccCcccCCccCCC-CCCccEEEccCcccccc-CCccccCCCCccEEECcCCcc
Q 046055          199 --------EVPESFSALKNLSLVQLFKNNLRGPFPSFVGD-YPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQI  268 (549)
Q Consensus       199 --------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~  268 (549)
                              ..+..+++..-.....+...++....+..+.. ...+..--.+.+..... ....|..+++|+.+++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                    11222222222222222222222222111111 01111101111111111 112355666666666666666


Q ss_pred             cccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc-cCcc
Q 046055          269 EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE-IPEN  347 (549)
Q Consensus       269 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~  347 (549)
                      +++.+.+|.....+++|.+..|.+..+....|.++..|+.|++.+|+++...|..|....+|.+|.+-.|.+.-. -..+
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            666666666666666666666666655555666666666666666666655556666666666666655543200 0000


Q ss_pred             ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC---CCccc---------cccCCCCCE-EEccCCcccc
Q 046055          348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG---ELPEE---------MFNLKVISL-INVSSNNISG  414 (549)
Q Consensus       348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~---------~~~l~~L~~-L~l~~n~l~~  414 (549)
                      +.  ..     +.+.+.. ..|. -.....++.+.+++..+.+   ..|+.         -..++-+.+ ...++..+. 
T Consensus       367 l~--~W-----lr~~~~~-~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-  436 (498)
T KOG4237|consen  367 LG--EW-----LRKKSVV-GNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-  436 (498)
T ss_pred             HH--HH-----HhhCCCC-CCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-
Confidence            00  00     0000000 0010 0111233444444432210   01111         112222332 233333333 


Q ss_pred             cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055          415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+++++|++.......|.+++.|.+|-|++|
T Consensus       437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            4554433  35678899999998 45544  45677 8899999998666678888888988888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4.6e-19  Score=182.09  Aligned_cols=260  Identities=28%  Similarity=0.350  Sum_probs=139.7

Q ss_pred             CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055          186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS  265 (549)
Q Consensus       186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  265 (549)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|.   ..++|+.|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC---cccccceeeccC
Confidence            344555555554 3343332  245555555555542 222   1355666666666555 2332   124555666666


Q ss_pred             CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055          266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP  345 (549)
Q Consensus       266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  345 (549)
                      |.+.. ++.   .+..|+.|++.+|.++... .   ..++|+.|++++|++. .+|..   .++|+.|++++|.+.+. |
T Consensus       272 N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~L-P  338 (788)
T PRK15387        272 NPLTH-LPA---LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSL-P  338 (788)
T ss_pred             Cchhh-hhh---chhhcCEEECcCCcccccc-c---cccccceeECCCCccc-cCCCC---cccccccccccCccccc-c
Confidence            55542 221   1234555666666555321 1   2345666666666655 23321   23466666666666532 2


Q ss_pred             ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCC
Q 046055          346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS  425 (549)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (549)
                      .   ...+|++|++++|++.+ +|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|++.. +|..   .++
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             c---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            2   12456677777776663 3332   245666677777665 34432   2456677777776663 3322   246


Q ss_pred             CcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055          426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       426 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      |+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            7777777777763 4432   235666777777776 556666677777777777777765443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=1.6e-18  Score=178.02  Aligned_cols=263  Identities=24%  Similarity=0.323  Sum_probs=160.1

Q ss_pred             CCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccC
Q 046055          162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWG  241 (549)
Q Consensus       162 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  241 (549)
                      -..|+++.+.+.. .|..+.  ++|+.|++.+|.++. +|.   .+++|++|++++|++.. +|..   .++|+.|++.+
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            3445555555442 222232  245555555555542 222   13455555555555552 2221   34566666666


Q ss_pred             ccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCC
Q 046055          242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP  321 (549)
Q Consensus       242 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  321 (549)
                      |.+. .+|..   ..+|+.|++++|++.. +|.   ..++|+.|++++|.+.... .   ...+|+.|++.+|.+. .+|
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~-~LP  338 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLT-SLP  338 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCC-C---CcccccccccccCccc-ccc
Confidence            6555 23321   2445566666666552 232   2355666666666665431 1   1234666777777765 344


Q ss_pred             ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCC
Q 046055          322 AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV  401 (549)
Q Consensus       322 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (549)
                      ..   .++|+.|++++|.+.+. |.   ...+|+.|++++|.+.. +|..   ..+|+.|++++|.++ .+|..   .++
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~  403 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSE  403 (788)
T ss_pred             cc---ccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccC
Confidence            31   24688888888888743 32   23577888888888873 5543   357888999999887 45543   357


Q ss_pred             CCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055          402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM  468 (549)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  468 (549)
                      |+.|++++|.+.. +|..   ..+|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            8889999998873 5543   347888999999998 678888889999999999999986665555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.5e-19  Score=174.40  Aligned_cols=136  Identities=21%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             cccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCcccchhh
Q 046055          372 IGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGEIPKA  443 (549)
Q Consensus       372 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~~~~~  443 (549)
                      +..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+..    ...+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            33444555555555554421    1122233345555555555543221    223344555666666666655422222


Q ss_pred             hh-C----CCCCCEEECCCCcccc----cCCccccCCCCCCeEeCCCCCCccc----CC-CCCCC-CCCCccccCCCCC
Q 046055          444 IS-Q----LRDLSILNLSRNQLTG----PIPTDMQDMMSLTTLDLSYNNLNGE----VP-SGGHF-PAFDEASFAGNPN  507 (549)
Q Consensus       444 ~~-~----~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p-~~~~~-~~l~~l~l~~n~~  507 (549)
                      +. .    .+.|++|++++|.++.    .....+..+++|+++++++|.+...    .. ....+ +.++++++.+||+
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            11 1    2566666666666541    1222334445666666666666532    11 11223 4566666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=3.3e-19  Score=171.90  Aligned_cols=273  Identities=24%  Similarity=0.324  Sum_probs=196.5

Q ss_pred             eeecccccCc-ccCCccCCCCCCccEEEccCccccc----cCCccccCCCCccEEECcCCcccc------cCCccccCCC
Q 046055          212 LVQLFKNNLR-GPFPSFVGDYPNLEVLQVWGNNFTG----ELPENLGRNRKLLLLDVSSNQIEG------KIPRDLCKGE  280 (549)
Q Consensus       212 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~~~  280 (549)
                      .|+|..+.+. ......+..+..|+.++++++.++.    .++..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666665 3444445567789999999998853    244456677889999999987762      1233456678


Q ss_pred             CccEEeccccccccCCCccccCCC---CCcEEEccCCcCccc----CCccCCCC-CCCCEEEeecCcCccc----cCccc
Q 046055          281 RLKSLILMQNLFSGPIPEELGACE---SLTKFRAMKNQLNGT----IPAGIFNL-PLLKMIELDHNLLSGE----IPENL  348 (549)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~----~~~~~~~~-~~L~~L~l~~~~l~~~----~~~~~  348 (549)
                      +|+.|++++|.+....+..+..+.   +|++|++.+|++.+.    +...+..+ ++|++|++++|.+.+.    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            999999999988754444444444   499999999988632    22344456 8999999999998843    22345


Q ss_pred             cCCCCCCEEEccCceeccc----CCcccccCCCCCEEEccCCcCCCCC----ccccccCCCCCEEEccCCcccccCCccc
Q 046055          349 SISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGEL----PEEMFNLKVISLINVSSNNISGEIPTSI  420 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (549)
                      ..+..|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..    ...+..+++|+.|++++|.+.+.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5667899999999998742    2334556679999999999886443    3445678899999999999875333322


Q ss_pred             c-----cCCCCcEEECCCCcCcc----cchhhhhCCCCCCEEECCCCccccc----CCccccCC-CCCCeEeCCCCCC
Q 046055          421 S-----GCISLTTVDFSRNSLSG----EIPKAISQLRDLSILNLSRNQLTGP----IPTDMQDM-MSLTTLDLSYNNL  484 (549)
Q Consensus       421 ~-----~~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l-~~L~~L~l~~n~~  484 (549)
                      .     ..+.|++|++++|.+++    .+...+..+++|+++++++|.+...    ....+... +.|+++++.+|++
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2     23799999999999973    2345567778999999999999854    33444555 7899999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=2.9e-17  Score=170.11  Aligned_cols=247  Identities=25%  Similarity=0.438  Sum_probs=176.6

Q ss_pred             CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055          208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL  287 (549)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  287 (549)
                      .+...|.+.++.++. +|..+  .+.++.|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence            356788888887773 45433  357899999999888 5565443  58999999999887 345443  257889999


Q ss_pred             cccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc
Q 046055          288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK  367 (549)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  367 (549)
                      ++|.+... |..+  ..+|+.|++++|++. .+|..+.  ++|+.|++++|.+... |..+  .++|+.|++++|.+.. 
T Consensus       249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-
Confidence            99888743 3333  247888999888887 5665443  5789999999888753 3333  2578888888888873 


Q ss_pred             CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCC
Q 046055          368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL  447 (549)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~  447 (549)
                      +|..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++ .+|..+.  
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence            44433  368888899988887 4665553  68888999988887 4555443  68888999999888 4455444  


Q ss_pred             CCCCEEECCCCcccccCCccc----cCCCCCCeEeCCCCCCc
Q 046055          448 RDLSILNLSRNQLTGPIPTDM----QDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       448 ~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~n~~~  485 (549)
                      .+|+.|++++|++. .+|..+    ..++++..+++.+|++.
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            36888888998887 445433    34577888888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=4.1e-17  Score=168.95  Aligned_cols=247  Identities=26%  Similarity=0.430  Sum_probs=188.6

Q ss_pred             CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEEC
Q 046055          184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDV  263 (549)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  263 (549)
                      .+...|+++++.++ ..|..+.  ++++.|++++|++.. +|..+  .++|++|++++|.++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35788999998887 4555443  589999999999884 44443  358999999999988 5665443  57999999


Q ss_pred             cCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc
Q 046055          264 SSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE  343 (549)
Q Consensus       264 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  343 (549)
                      ++|.+. .+|..+.  .+|+.|++++|.+... +..+  +++|+.|++++|++. .+|..+  .++|+.|++++|.+...
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCccccC
Confidence            999988 4565553  5899999999988853 4433  358999999999987 455443  25799999999998854


Q ss_pred             cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055          344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC  423 (549)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (549)
                       |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.+. .+|..+.  
T Consensus       320 -P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        320 -PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             -Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence             3333  3689999999999884 565443  69999999999997 6776553  68999999999998 4565544  


Q ss_pred             CCCcEEECCCCcCcccchhh----hhCCCCCCEEECCCCccc
Q 046055          424 ISLTTVDFSRNSLSGEIPKA----ISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       424 ~~L~~L~L~~n~i~~~~~~~----~~~~~~L~~L~l~~n~i~  461 (549)
                      .+|+.|++++|++. .+|..    +..++.+..|++.+|.++
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            47999999999998 44443    444588999999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=3.9e-19  Score=142.33  Aligned_cols=180  Identities=25%  Similarity=0.441  Sum_probs=146.1

Q ss_pred             CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS  403 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (549)
                      +..+.+++.|.++.|+++.+ |..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            44566778888888888844 445777888888888888888 67778888999999999988887 8888899999999


Q ss_pred             EEEccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055          404 LINVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       404 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      .||+.+|++.+ ..|+.|-.+..|+.|++++|.+. .+|...+++++|+.|.+++|.+- ..|..++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            99999888753 47788888899999999999987 77777899999999999999988 77888888999999999999


Q ss_pred             CCcccCCCCCCCC---CCCccccCCCCCC
Q 046055          483 NLNGEVPSGGHFP---AFDEASFAGNPNL  508 (549)
Q Consensus       483 ~~~~~~p~~~~~~---~l~~l~l~~n~~~  508 (549)
                      ++.-.+|+.+.+.   .-+.+....|||.
T Consensus       184 rl~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  184 RLTVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             eeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            9997777765543   3345566667765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=4.2e-18  Score=136.49  Aligned_cols=171  Identities=26%  Similarity=0.428  Sum_probs=152.7

Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      ..+..++.|.++.|+++ ..|..+..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|..|.+++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            35577889999999999 67777889999999999999998 88999999999999999999998 89999999999999


Q ss_pred             EECCCCcCcc-cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055          429 VDFSRNSLSG-EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN  507 (549)
Q Consensus       429 L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~  507 (549)
                      ||+.+|.+.+ .+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+++|.+...+-+.+.+..|+++++.||+.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            9999999975 47888999999999999999999 888889999999999999999997777889999999999999999


Q ss_pred             CCCCCCCCCCCCcccc
Q 046055          508 LCLPRNVTCLPSIYSA  523 (549)
Q Consensus       508 ~~~~~~~~~~~~~~~~  523 (549)
                      ...|+....+.-+...
T Consensus       186 ~vlppel~~l~l~~~k  201 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNK  201 (264)
T ss_pred             eecChhhhhhhhhhhH
Confidence            9888765544444333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=1.1e-13  Score=124.20  Aligned_cols=248  Identities=24%  Similarity=0.251  Sum_probs=155.3

Q ss_pred             cccCCCcccEEEccCCCCCCcCChhhh---hCCCCCcEEEccCCC---CcCCCC-------ccccCCCCcCEEEccCCcc
Q 046055            9 LSKPKMSLKVLNISGNGFQDYFPGQIV---VGMTELEVLDAFNNN---FTGPLP-------VEIVSLKNLKHLSFGGNYF   75 (549)
Q Consensus         9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~---~~~~~L~~L~L~~~~---~~~~~~-------~~l~~l~~L~~L~ls~~~~   75 (549)
                      +.....+++.++||||.+..+-.+.+.   +.-++|+..++++-.   ....+|       .++..+++|++||||.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            345678889999999988644333333   244677777777642   122233       3345667888888888876


Q ss_pred             eeccCc----cccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCcc
Q 046055           76 SGEIPE----SYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE  151 (549)
Q Consensus        76 ~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  151 (549)
                      ...-+.    -+..++.|++|.+.+|.+....-..++.  .|.+|.          .......-+.|+++.+.+|.+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeeccccccc
Confidence            532222    2355677777777777765433222221  111111          111233456888888888877642


Q ss_pred             ----CCccccCCCCCCeEeccCccccccCC----ccccCCCCCCEEeCCCCcCccc----cCccccCCCcCceeeccccc
Q 046055          152 ----IPASLSQLKLLDALFLQMNKLTGHIH----PELSGLISLTQLDLSLNCLTGE----VPESFSALKNLSLVQLFKNN  219 (549)
Q Consensus       152 ----~~~~l~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~  219 (549)
                          ....|...+.|+.+.+..|.|.....    ..+..+++|+.|||..|.++..    +...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                23456677888898888887764322    3467788999999999987642    34556677888888888888


Q ss_pred             CcccCCccC-----CCCCCccEEEccCcccccc----CCccccCCCCccEEECcCCcc
Q 046055          220 LRGPFPSFV-----GDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQI  268 (549)
Q Consensus       220 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~  268 (549)
                      +.+.....+     ...|+|+.+.+.+|.++..    +.......+.|+.|++++|++
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            775433322     2367888888888877632    122233456777777777776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.23  E-value=1e-12  Score=118.05  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=19.5

Q ss_pred             CCCCCccEEEccCcccccc----CCccccCCCCccEEECcC
Q 046055          229 GDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSS  265 (549)
Q Consensus       229 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~  265 (549)
                      ..+.++..+++++|.+...    +...+.+.+.|+..++++
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD   67 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence            3455666666666665431    223344445555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=3.9e-12  Score=111.85  Aligned_cols=128  Identities=24%  Similarity=0.293  Sum_probs=68.8

Q ss_pred             CCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEEC
Q 046055          352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF  431 (549)
Q Consensus       352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  431 (549)
                      ..|+++++++|.|. .+.+...-.|.++.|++++|.+. .+. .+..+++|+.||+++|.+. ...+.-..+-+.+.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34555555555555 34444555556666666666554 222 2455566666666666554 22222233455666666


Q ss_pred             CCCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCc
Q 046055          432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       432 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      ++|.|.+.  .++..+-+|+.||+++|+|...- -..++++|-|+.+.+.+|++.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            66666422  34555666666666666665221 134555666666666666666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=6.7e-12  Score=110.42  Aligned_cols=137  Identities=24%  Similarity=0.316  Sum_probs=115.0

Q ss_pred             ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055          371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL  450 (549)
Q Consensus       371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  450 (549)
                      ....+..|+++|+++|.|+ .+.+++.-.|.++.|++++|.+...  +.++.+++|+.|||++|.++ ....+-..+-++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3445678999999999998 8888888899999999999999743  34889999999999999998 444555678899


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc--cCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055          451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG--EVPSGGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      +.|.+++|.|...  +.+..+-+|..||+++|+|..  .+...|.+|-|..+.+.+||..-.+..
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            9999999999844  467778899999999999974  344568999999999999998765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.18  E-value=1.4e-11  Score=130.29  Aligned_cols=108  Identities=25%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             CCCcccEEEccCCCC-CCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCC
Q 046055           12 PKMSLKVLNISGNGF-QDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLE   90 (549)
Q Consensus        12 ~~~~L~~L~Ls~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~   90 (549)
                      +++.|++|-+.++.. ...++..+|..++.|++|||++|.=...+|..++++-+||+|+++++.+. .+|..+.+++.|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            345666666666651 22345555656777777777766444466777777777777777777766 6677777777777


Q ss_pred             EEEccCCCCccccchhccCCCCCceeecCC
Q 046055           91 YLGLNGIGLNGTAPVFLSLLKNLREMYIGY  120 (549)
Q Consensus        91 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  120 (549)
                      +|++..+......+.....+++||+|.+..
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeec
Confidence            777766655444455555566777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.6e-11  Score=102.46  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             cCCCCCEEEccCCcCCCCCccccc-cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCE
Q 046055          374 NLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI  452 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  452 (549)
                      +..++++|++++|.|+ .+. .+. .+.+|+.|++++|.+...  ..+..++.|++|++++|.|++..+.....+++|++
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3445666777777665 322 233 456677777777776632  23666777777777777777432222235677777


Q ss_pred             EECCCCcccccCC-ccccCCCCCCeEeCCCCCCcccCCCC-----CCCCCCCcccc
Q 046055          453 LNLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPSG-----GHFPAFDEASF  502 (549)
Q Consensus       453 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~l~~l~l  502 (549)
                      |++++|+|.+... ..+..+++|+.|++.+|++... +..     ..+|+|+.++-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            7777777764321 3556677777777777777632 322     34566666653

>PLN03150 hypothetical protein; Provisional

Probab=99.15  E-value=1.6e-10  Score=119.89  Aligned_cols=118  Identities=31%  Similarity=0.566  Sum_probs=101.0

Q ss_pred             CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCC
Q 046055          401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS  480 (549)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  480 (549)
                      .++.|++++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788999999988889899999999999999999988888889999999999999999998889999999999999999


Q ss_pred             CCCCcccCCCC--CCCCCCCccccCCCCCCCCCCC-CCCCC
Q 046055          481 YNNLNGEVPSG--GHFPAFDEASFAGNPNLCLPRN-VTCLP  518 (549)
Q Consensus       481 ~n~~~~~~p~~--~~~~~l~~l~l~~n~~~~~~~~-~~~~~  518 (549)
                      +|.+.+.+|..  ..+..+..+++.+|+.+|..+. ..|.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~  539 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP  539 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence            99999888864  2234667889999999997643 55643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.3e-12  Score=116.29  Aligned_cols=210  Identities=18%  Similarity=0.176  Sum_probs=132.8

Q ss_pred             cCCCCccEEeccccccccCCC-ccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCc-cccCCC
Q 046055          277 CKGERLKSLILMQNLFSGPIP-EELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPE-NLSISD  352 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~  352 (549)
                      .++.+|+.+.+.++....... .....|++++.|+++.|-+...  +......+|+|+.|+++.|.+..-... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345778888888887764332 3566788888888888865432  223344678888888888877522111 112456


Q ss_pred             CCCEEEccCceeccc-CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCC-cccccCCCCcEEE
Q 046055          353 SLNQLKVAYNNIAGK-IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP-TSISGCISLTTVD  430 (549)
Q Consensus       353 ~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~  430 (549)
                      .+++|.++.|.++.. +...+..+|+|+.|++..|...........-+..|+.|+|++|++.+..- .....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            788888888877622 33345567788888888874222222333445677888888887763321 2455677888888


Q ss_pred             CCCCcCccc-chhh-----hhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCcc
Q 046055          431 FSRNSLSGE-IPKA-----ISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       431 L~~n~i~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      ++.|++.+. .|++     ...+++|++|++..|+|.+.. -..+..+++|+.|.+..|.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888877643 2333     355678888888888875221 1234556777777777777763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=5.7e-12  Score=116.59  Aligned_cols=214  Identities=19%  Similarity=0.189  Sum_probs=99.9

Q ss_pred             CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCC--CCccccCCCCcCEEEccCCcceeccCcc-ccCCCC
Q 046055           12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGP--LPVEIVSLKNLKHLSFGGNYFSGEIPES-YSEIQS   88 (549)
Q Consensus        12 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~~-~~~l~~   88 (549)
                      ++..|+++.|.++.+.....+.....|++++.|||++|-+...  +......+++|+.|+++.|.+....... -..+.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4566677777766664322223444667777777777655431  1222345677777777776654211111 123456


Q ss_pred             CCEEEccCCCCccccchh-ccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccC-CccccCCCCCCeEe
Q 046055           89 LEYLGLNGIGLNGTAPVF-LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI-PASLSQLKLLDALF  166 (549)
Q Consensus        89 L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~  166 (549)
                      |+.|.++.|.++...... ...+++|+.|++.. |...........-+..|+.|++++|.+.+.. ......++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~-N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA-NEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc-ccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            666666666665432221 23455555555555 2111111112222344555555555443111 11233344444444


Q ss_pred             ccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCC--ccCCCCCCccEEEccCccc
Q 046055          167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP--SFVGDYPNLEVLQVWGNNF  244 (549)
Q Consensus       167 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~  244 (549)
                      ++.+.+..+......                  .-+....+++|++|++..|++.+ ++  ..+...++|+.|.+..+.+
T Consensus       278 ls~tgi~si~~~d~~------------------s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVE------------------SLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccccCcchhcCCCcc------------------chhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccccc
Confidence            444444432111110                  00012344566666666666542 11  1123456666666666655


Q ss_pred             c
Q 046055          245 T  245 (549)
Q Consensus       245 ~  245 (549)
                      .
T Consensus       339 n  339 (505)
T KOG3207|consen  339 N  339 (505)
T ss_pred             c
Confidence            4

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=9.1e-11  Score=116.41  Aligned_cols=152  Identities=32%  Similarity=0.533  Sum_probs=72.8

Q ss_pred             CCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEcc
Q 046055          329 LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVS  408 (549)
Q Consensus       329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (549)
                      +|+.|++++|.+... +..+..++.|+.|++++|++. .++......+.|+.|++++|++. .+|........|+++.++
T Consensus       141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            455555555554422 123344455555555555554 23322224455555555555554 444333333445555555


Q ss_pred             CCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCccc
Q 046055          409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      +|++. ..+..+..+..+..+.+.+|++. ..+..+..+++++.|++++|.++...+  +....+++.|++++|.+...
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            55432 33344445555555555555554 223444555555555555555553322  55555555555555555433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=7.7e-11  Score=99.59  Aligned_cols=102  Identities=28%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccc-ccCCCCcEEECCCCcCcccc-hhhhhCCCCCCE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEI-PKAISQLRDLSI  452 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~  452 (549)
                      +.+|+.|++++|.++ .+ +.+..++.|+.|++++|++.. +...+ ..+++|++|++++|+|.+.. -..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            344555555555544 22 134444555555555555542 22222 23455555555555554321 133445555555


Q ss_pred             EECCCCcccccCC---ccccCCCCCCeEeC
Q 046055          453 LNLSRNQLTGPIP---TDMQDMMSLTTLDL  479 (549)
Q Consensus       453 L~l~~n~i~~~~~---~~l~~l~~L~~L~l  479 (549)
                      |++.+|.+.....   ..+..+|+|+.||-
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            5555555542211   12344556666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=2e-12  Score=123.43  Aligned_cols=193  Identities=26%  Similarity=0.427  Sum_probs=156.3

Q ss_pred             CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEE
Q 046055          303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS  382 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  382 (549)
                      +..-...+++.|++. .+|..+..+-.|+.+.+..|.+. ..|..+.++..|..++++.|++. ..|..++.+ -|+.|.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence            344456678888887 78888888888999999999887 66778888999999999999998 667666665 489999


Q ss_pred             ccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055          383 LQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG  462 (549)
Q Consensus       383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~  462 (549)
                      +++|+++ .+|+.+...+.|..||.+.|.+. .+|..+.++.+|+.|++..|.+.+ +|..+.. -.|..||++.|+++ 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-
Confidence            9999998 88888888899999999999997 778888999999999999999984 4555554 46889999999999 


Q ss_pred             cCCccccCCCCCCeEeCCCCCCcccCCCC----CCCCCCCccccCCC
Q 046055          463 PIPTDMQDMMSLTTLDLSYNNLNGEVPSG----GHFPAFDEASFAGN  505 (549)
Q Consensus       463 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~~~l~~l~l~~n  505 (549)
                      .+|-+|..+..|++|-|.+|++. .+|..    |..-=++.|+...|
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            88889999999999999999998 66643    33223344444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.5e-10  Score=114.84  Aligned_cols=195  Identities=30%  Similarity=0.486  Sum_probs=153.2

Q ss_pred             EEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCC
Q 046055          308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN  386 (549)
Q Consensus       308 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  386 (549)
                      .+....+.+.... ......+.++.+++.++.+..+.+ ...... .|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3445555443122 223344778999999999885544 344443 8999999999998 55566789999999999999


Q ss_pred             cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055          387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT  466 (549)
Q Consensus       387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  466 (549)
                      ++. .+|......+.|+.|++++|.+. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            998 66666657899999999999998 56665556677999999999755 55677888999999999999998 4467


Q ss_pred             cccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCC
Q 046055          467 DMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCL  510 (549)
Q Consensus       467 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~  510 (549)
                      .+..++++++|++++|.+. .++..+.+..++.+++++|...-.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         250 SIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hhccccccceecccccccc-ccccccccCccCEEeccCcccccc
Confidence            7888899999999999999 555588889999999999876543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=4.9e-12  Score=120.78  Aligned_cols=193  Identities=30%  Similarity=0.451  Sum_probs=160.2

Q ss_pred             CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055          281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA  360 (549)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  360 (549)
                      --...+++.|.+. ..+..+..+..|+.+.+..|.+. .+|..+..+..|..++++.|.+. ..|..+..+ -|+.|.++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence            3345677888877 45667778888999999999887 88888999999999999999998 445545444 38999999


Q ss_pred             CceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc
Q 046055          361 YNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI  440 (549)
Q Consensus       361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~  440 (549)
                      +|+++ .+|..++....|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+. .-.|..||+++|++. .+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence            99999 78888888899999999999998 88888999999999999999998 5677666 457999999999998 78


Q ss_pred             hhhhhCCCCCCEEECCCCcccccCCccccC--C-CCCCeEeCCCCC
Q 046055          441 PKAISQLRDLSILNLSRNQLTGPIPTDMQD--M-MSLTTLDLSYNN  483 (549)
Q Consensus       441 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--l-~~L~~L~l~~n~  483 (549)
                      |-.|..++.|++|-|.+|.++ ..|..+..  . -=.++|+..-|+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            999999999999999999998 66654422  2 226788888885

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=3e-10  Score=120.32  Aligned_cols=108  Identities=28%  Similarity=0.286  Sum_probs=86.2

Q ss_pred             ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055           10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL   89 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L   89 (549)
                      |..++.|++|||++|.-.+.+|..+. .+-+||+|+++++.+. .+|..+++++.|.+|++.++......|.....+++|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            77899999999999887788999998 9999999999999999 799999999999999999887655567777889999


Q ss_pred             CEEEccCCCCc--cccchhccCCCCCceeecC
Q 046055           90 EYLGLNGIGLN--GTAPVFLSLLKNLREMYIG  119 (549)
Q Consensus        90 ~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~  119 (549)
                      ++|.+......  ......+.++.+|+.+.+.
T Consensus       645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  645 RVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999875422  1122223444555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2.7e-09  Score=110.86  Aligned_cols=113  Identities=33%  Similarity=0.569  Sum_probs=97.7

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      .++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999988899999999999999999999988888889999999999999999998899999999999999999


Q ss_pred             CCcccccCCccccCC-CCCCeEeCCCCCCcccCC
Q 046055          457 RNQLTGPIPTDMQDM-MSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p  489 (549)
                      +|.+++.+|..+... .++..+++.+|+...-.|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999998888877653 467788899887664444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=9.4e-10  Score=76.31  Aligned_cols=59  Identities=39%  Similarity=0.549  Sum_probs=32.8

Q ss_pred             CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCC
Q 046055          425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN  483 (549)
Q Consensus       425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  483 (549)
                      +|++|++++|+++...+.+|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=2.1e-09  Score=74.51  Aligned_cols=60  Identities=35%  Similarity=0.491  Sum_probs=35.1

Q ss_pred             CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055          401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i  460 (549)
                      +|++|++++|++....+..|.++++|++|++++|.+....+.+|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555666666666666666555555566666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.83  E-value=3.3e-10  Score=112.45  Aligned_cols=128  Identities=25%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055          231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR  310 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  310 (549)
                      +..++.+.+..+.+.. ....+..+.+++.+++.+|.+..... .+..+++|+.|++++|.++...  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhhe
Confidence            4455555565655552 22234555666666666666653321 1444556666666666555432  233344455555


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceec
Q 046055          311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIA  365 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~  365 (549)
                      +.+|.+..  ...+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus       147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            55555431  1122234445555555554443322 1 233344444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=9.5e-10  Score=109.17  Aligned_cols=263  Identities=24%  Similarity=0.248  Sum_probs=176.0

Q ss_pred             CCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEc
Q 046055          232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA  311 (549)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  311 (549)
                      +..+.++...+........ ...+..++.++++.|.+.. ....+..+.+++.+++.+|.+..+.. .+..+++|+++++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheec
Confidence            4555555555433311111 1345667777788887764 23346777888999999988875432 1677888889999


Q ss_pred             cCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCC
Q 046055          312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       312 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~  390 (549)
                      ++|.|+...+  +..++.|+.|++++|.+...  ..+..+..|+.+++++|++....+ . ...+.+++.+.+++|.+. 
T Consensus       126 s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-  199 (414)
T KOG0531|consen  126 SFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-  199 (414)
T ss_pred             cccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-
Confidence            9988864332  44566688899998888744  245557888888888888875444 2 467788888888888775 


Q ss_pred             CCccccccCCCCCEEEccCCcccccCCcccccCC--CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055          391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCI--SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM  468 (549)
Q Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  468 (549)
                       ..+.+..+..+..+++..|.+....+  +..+.  +|+.+++++|++. ..+..+..++.++.|++.+|++...  ..+
T Consensus       200 -~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~  273 (414)
T KOG0531|consen  200 -EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGL  273 (414)
T ss_pred             -cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccc
Confidence             22333444455556778887764332  22222  3889999999987 4435677788889999999988744  345


Q ss_pred             cCCCCCCeEeCCCCCCcc---cCCC--CCCCCCCCccccCCCCCCC
Q 046055          469 QDMMSLTTLDLSYNNLNG---EVPS--GGHFPAFDEASFAGNPNLC  509 (549)
Q Consensus       469 ~~l~~L~~L~l~~n~~~~---~~p~--~~~~~~l~~l~l~~n~~~~  509 (549)
                      ...+.+..+...+|++..   ....  ....+.++.+.+.+||..-
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            666777788888887662   2222  3566788888888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=1.8e-10  Score=113.34  Aligned_cols=184  Identities=26%  Similarity=0.310  Sum_probs=117.7

Q ss_pred             CccCCCCCCCCEEEeecCcCccccCccccCC-CCCCEEEccCceec---ccCCcc---c---ccCCCCCEEEccCCcCCC
Q 046055          321 PAGIFNLPLLKMIELDHNLLSGEIPENLSIS-DSLNQLKVAYNNIA---GKIPPS---I---GNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~---~~~~~~---~---~~~~~L~~L~l~~n~l~~  390 (549)
                      |-.+..+.+|+.|.+.+|.+...  ..+..+ ..|+.|...+ .+.   ..+..+   +   ..+..|...++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            44556677788888888776521  111111 2333332221 111   000000   1   01346777888888876 


Q ss_pred             CCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccC
Q 046055          391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD  470 (549)
Q Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  470 (549)
                      ...+++.-++.++.|+++.|++++.  +.+..|+.|++|||++|.++...--...++ .|..|.+++|.++..  ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence            6667777788888888888888643  367788888888888888874322223333 488888888888744  35777


Q ss_pred             CCCCCeEeCCCCCCcccCC--CCCCCCCCCccccCCCCCCCCCCC
Q 046055          471 MMSLTTLDLSYNNLNGEVP--SGGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       471 l~~L~~L~l~~n~~~~~~p--~~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      +.+|+.||+++|-+.+.-.  ..+.+..|+.+.+.|||.-|.|.-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h  297 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH  297 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence            8888889999888774322  335677888899999998887643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1e-09  Score=96.79  Aligned_cols=207  Identities=17%  Similarity=0.241  Sum_probs=123.1

Q ss_pred             ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCC-CCccccCC-CCcCEEEccCCccee-ccCccccCC
Q 046055           10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGP-LPVEIVSL-KNLKHLSFGGNYFSG-EIPESYSEI   86 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l-~~L~~L~ls~~~~~~-~~~~~~~~l   86 (549)
                      -.+-+..+.+|+.+-.+.......+.  -..+.++.+....+... +.+.+.-+ ..|++||+|+..++. .+-.-+..+
T Consensus       132 ~~de~lW~~lDl~~r~i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C  209 (419)
T KOG2120|consen  132 ASDESLWQTLDLTGRNIHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQC  209 (419)
T ss_pred             cccccceeeeccCCCccChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHH
Confidence            34456778899999887643333332  24566777776555432 22223323 369999999998763 233446778


Q ss_pred             CCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCC-ccccCCCCCCEEEccCccCCccCCccc-cC-CCCCC
Q 046055           87 QSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP-PEFGTLSKLRVLDMASCNISGEIPASL-SQ-LKLLD  163 (549)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~-l~~L~  163 (549)
                      .+|+.|.+.++.+...+...++.-.+|+.|+++.++.++.... -.+..|+.|..|++++|.......... .. -++|.
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            9999999999999888778888889999999998776654322 235678999999999997764322111 11 14566


Q ss_pred             eEeccCcccc---ccCCccccCCCCCCEEeCCCCc-CccccCccccCCCcCceeecccc
Q 046055          164 ALFLQMNKLT---GHIHPELSGLISLTQLDLSLNC-LTGEVPESFSALKNLSLVQLFKN  218 (549)
Q Consensus       164 ~L~l~~~~l~---~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~  218 (549)
                      .|+++++.-.   .....-...+++|.+||+++|. ++......|..++.|+++.++.|
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            6666654211   0111112345566666665542 22211222233444444444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.2e-09  Score=96.50  Aligned_cols=60  Identities=18%  Similarity=0.135  Sum_probs=28.5

Q ss_pred             cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCc
Q 046055           15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY   74 (549)
Q Consensus        15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~   74 (549)
                      .|+++|||...++...-..+...|.+|+-|++.++++.+.+...+++..+|+.|+++.+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            345555555444322222333345555555555555554444444555555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=1.3e-09  Score=107.52  Aligned_cols=125  Identities=27%  Similarity=0.387  Sum_probs=57.6

Q ss_pred             CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECC
Q 046055          354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFS  432 (549)
Q Consensus       354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~  432 (549)
                      |.+.++++|++. .....+.-++.|+.|++++|++++. . .+..+++|++|||++|.+. .+|. .-.+|. |+.|+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence            344444444444 3333444445555555555555421 1 3444555555555555554 2222 122232 5555555


Q ss_pred             CCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeEeCCCCCCc
Q 046055          433 RNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       433 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      +|.++..  ..+.++++|+.||+++|-+.+-. .+.+..+..|+.|+|.+|++-
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            5555432  23455555555555555554211 112333445555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.42  E-value=2.3e-08  Score=87.26  Aligned_cols=238  Identities=18%  Similarity=0.158  Sum_probs=130.1

Q ss_pred             CCCCCCEEeCCCCcCccccC----ccccCCCcCceeecccccCc---ccCCccCCCCCCccEEEccCccccccCCccccC
Q 046055          182 GLISLTQLDLSLNCLTGEVP----ESFSALKNLSLVQLFKNNLR---GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR  254 (549)
Q Consensus       182 ~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  254 (549)
                      .+..++.+++++|.+...-.    ..+.+-.+|+..++++--..   +.+++.+                . -+.+.+..
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L----------------~-~Ll~aLlk   90 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNL----------------V-MLLKALLK   90 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHH----------------H-HHHHHHhc
Confidence            35677888888887764322    23334456666655542111   1111000                0 11122334


Q ss_pred             CCCccEEECcCCcccccCCcc----ccCCCCccEEeccccccccCCC-------------ccccCCCCCcEEEccCCcCc
Q 046055          255 NRKLLLLDVSSNQIEGKIPRD----LCKGERLKSLILMQNLFSGPIP-------------EELGACESLTKFRAMKNQLN  317 (549)
Q Consensus       255 ~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~l~  317 (549)
                      ||+|+.+++++|.+....+..    +.+...|++|.+++|.+.-...             +-.++-|.|+...+..|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            455555555555444333322    2233455555555554442221             12345677888888888776


Q ss_pred             ccCCc-----cCCCCCCCCEEEeecCcCccccCc-----cccCCCCCCEEEccCceeccc----CCcccccCCCCCEEEc
Q 046055          318 GTIPA-----GIFNLPLLKMIELDHNLLSGEIPE-----NLSISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSL  383 (549)
Q Consensus       318 ~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l  383 (549)
                       ..+.     .+.+..+|+++.+..|.+......     .+.++.+|+.|++.+|.++-.    +...++.++.|++|.+
T Consensus       171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence             2222     233346899999999987644322     235678899999999988632    3345667788899999


Q ss_pred             cCCcCCCCCccccc------cCCCCCEEEccCCcccccCCcc-----c--ccCCCCcEEECCCCcCc
Q 046055          384 QNNRFNGELPEEMF------NLKVISLINVSSNNISGEIPTS-----I--SGCISLTTVDFSRNSLS  437 (549)
Q Consensus       384 ~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~-----~--~~~~~L~~L~L~~n~i~  437 (549)
                      .+|.+.......+.      ..|+|+.|...+|...+.....     +  ..+|-|..|.+.+|++.
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            99987655443322      3567777777777554221111     0  13445555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=4.2e-08  Score=85.70  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=107.9

Q ss_pred             CCCCCCCCEEEeecCcCccccCcc----ccCCCCCCEEEccCceecccCCcc-------------cccCCCCCEEEccCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIPEN----LSISDSLNQLKVAYNNIAGKIPPS-------------IGNLTNLNVLSLQNN  386 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~n  386 (549)
                      +..||+|+.+++++|.+....|+.    ++....|+.|.+++|.+...-...             ..+-|.|+.++...|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            445666666666666665444432    234456667777766654211111             124567888888888


Q ss_pred             cCCCCCcc-----ccccCCCCCEEEccCCcccccCC-----cccccCCCCcEEECCCCcCccc----chhhhhCCCCCCE
Q 046055          387 RFNGELPE-----EMFNLKVISLINVSSNNISGEIP-----TSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSI  452 (549)
Q Consensus       387 ~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~  452 (549)
                      ++. ..+.     .+..-..|+.+.+..|.|.....     ..+..+.+|+.|+|.+|.++..    +...+...+.|+.
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            775 3221     12233577888888887652211     1234567888888888877743    2344555567788


Q ss_pred             EECCCCcccccCCccc------cCCCCCCeEeCCCCCCcccC------CC--CCCCCCCCccccCCCCCCC
Q 046055          453 LNLSRNQLTGPIPTDM------QDMMSLTTLDLSYNNLNGEV------PS--GGHFPAFDEASFAGNPNLC  509 (549)
Q Consensus       453 L~l~~n~i~~~~~~~l------~~l~~L~~L~l~~n~~~~~~------p~--~~~~~~l~~l~l~~n~~~~  509 (549)
                      |.+.+|-++......+      ...|+|..|...+|.+.+-+      |+  .+.+|-|..+.+.||+..-
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            8888887765544332      22577777777777664321      11  1456666667777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=1e-07  Score=84.38  Aligned_cols=207  Identities=25%  Similarity=0.275  Sum_probs=105.9

Q ss_pred             ccEEEccCCCCCCcCC-hhhhhCCCCCcEEEccCCCCcC--CCCccccCCCCcCEEEccCCcceeccCccc-cCCCCCCE
Q 046055           16 LKVLNISGNGFQDYFP-GQIVVGMTELEVLDAFNNNFTG--PLPVEIVSLKNLKHLSFGGNYFSGEIPESY-SEIQSLEY   91 (549)
Q Consensus        16 L~~L~Ls~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~   91 (549)
                      +..+.+-++.+..... ..+...+++++.+||.+|.|++  .+...+.++|+|++|+++.|++...+ ..+ ..+.+|++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEE
Confidence            3355556666654333 2344466788888888888875  33344577888888888888876322 222 34567888


Q ss_pred             EEccCCCCccccc-hhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCc--cccCCCCCCeEecc
Q 046055           92 LGLNGIGLNGTAP-VFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA--SLSQLKLLDALFLQ  168 (549)
Q Consensus        92 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~  168 (549)
                      |.+.+..+..... ..+..++.+++|.++. |              +++.+++..+.+....+.  .+...+++..++..
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~-N--------------~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~  190 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSD-N--------------SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN  190 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhcc-c--------------hhhhhccccccccccchhhhhhhcCCcHHHHHHH
Confidence            8888876654332 2344555555555554 1              223333333332211100  01111222222222


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCcccc-CccccCCCcCceeecccccCccc-CCccCCCCCCccEEEccCcccc
Q 046055          169 MNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFSALKNLSLVQLFKNNLRGP-FPSFVGDYPNLEVLQVWGNNFT  245 (549)
Q Consensus       169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  245 (549)
                      .|++.       +-++++..+-+..|.+.+.. ...+..++.+..|+++.+++.+- -.+.+..++.|..|.+.++.+.
T Consensus       191 ~~~l~-------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  191 KNKLS-------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             HHhHH-------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            22222       12345555555555443221 12333445555666666665531 1123445666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=2.8e-07  Score=81.79  Aligned_cols=184  Identities=20%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             CCCCCEEEccCccCCc--cCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCcccc-CccccCCCcCc
Q 046055          135 LSKLRVLDMASCNISG--EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEV-PESFSALKNLS  211 (549)
Q Consensus       135 ~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~  211 (549)
                      ++.++.+++.+|.|++  ++...+..++.|++|+++.|++...+...-....+|+.|-+.+..+.... ...+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4566677777776663  33344566777777777777766443322234557777777777665332 23345677777


Q ss_pred             eeecccccCcccCCc---cCCCCCCccEEEccCccccc--cCCccccCCCCccEEECcCCcccccC-CccccCCCCccEE
Q 046055          212 LVQLFKNNLRGPFPS---FVGDYPNLEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSSNQIEGKI-PRDLCKGERLKSL  285 (549)
Q Consensus       212 ~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L  285 (549)
                      .+.++.|.......+   .-...+.+++++...|....  .....-..+|++..+.+..|.+.+.. ......++.+.-|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            777777744421111   11123466666666664321  11111233567777777777654321 1233344556666


Q ss_pred             eccccccccCCC-ccccCCCCCcEEEccCCcCcc
Q 046055          286 ILMQNLFSGPIP-EELGACESLTKFRAMKNQLNG  318 (549)
Q Consensus       286 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~  318 (549)
                      +++.+++.+... +++.+++.+..+.+..+.+.+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            666666654322 455666667777666666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=6.1e-06  Score=69.31  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEEEC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSILNL  455 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l  455 (549)
                      ....+|+++|.+. . .+.|.+++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.|.... .+-+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4456777777653 1 234556677777777777777655554455566777777777765321 123556677777777


Q ss_pred             CCCcccccC---CccccCCCCCCeEeCCCCC
Q 046055          456 SRNQLTGPI---PTDMQDMMSLTTLDLSYNN  483 (549)
Q Consensus       456 ~~n~i~~~~---~~~l~~l~~L~~L~l~~n~  483 (549)
                      -+|.++..-   ...+..+|+|+.||..+=.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            777765321   1234556777777765544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=9.8e-07  Score=91.62  Aligned_cols=152  Identities=24%  Similarity=0.280  Sum_probs=104.5

Q ss_pred             CcccEEEccCCCC-CCcCChhhhhCCCCCcEEEccCCCCcC-CCCccccCCCCcCEEEccCCcceeccCccccCCCCCCE
Q 046055           14 MSLKVLNISGNGF-QDYFPGQIVVGMTELEVLDAFNNNFTG-PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEY   91 (549)
Q Consensus        14 ~~L~~L~Ls~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~   91 (549)
                      .+|++||++|... ...-+..++..+|.|+.|.+++-.+.. ......+++++|+.||+|++.++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5789999998774 333456778889999999999876653 2233457889999999999998743  56788999999


Q ss_pred             EEccCCCCcc-ccchhccCCCCCceeecCCccccCcc-C----CccccCCCCCCEEEccCccCCccCCcc-ccCCCCCCe
Q 046055           92 LGLNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGG-I----PPEFGTLSKLRVLDMASCNISGEIPAS-LSQLKLLDA  164 (549)
Q Consensus        92 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~  164 (549)
                      |.+++-.+.. .....+-++++|++||++........ +    .+.-..++.|+.||++++.+.+...+. +...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9998766654 33456778999999999873222211 1    111234788999999988877543332 233455555


Q ss_pred             Eec
Q 046055          165 LFL  167 (549)
Q Consensus       165 L~l  167 (549)
                      +..
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=5.9e-07  Score=70.25  Aligned_cols=131  Identities=19%  Similarity=0.312  Sum_probs=69.7

Q ss_pred             CCEEEccCCcCCCCCccc---cccCCCCCEEEccCCcccccCCcccc-cCCCCcEEECCCCcCcccchhhhhCCCCCCEE
Q 046055          378 LNVLSLQNNRFNGELPEE---MFNLKVISLINVSSNNISGEIPTSIS-GCISLTTVDFSRNSLSGEIPKAISQLRDLSIL  453 (549)
Q Consensus       378 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  453 (549)
                      +..+++++|.+- .++..   +.....|+..++++|.+. ..|..|. ..+.++.|++++|.|. .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555543 23332   223344555566666665 3333332 3346666677777766 455556666777777


Q ss_pred             ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCc-cccCCCCCCCCCCC
Q 046055          454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDE-ASFAGNPNLCLPRN  513 (549)
Q Consensus       454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~-l~l~~n~~~~~~~~  513 (549)
                      +++.|.+. ..|..+..+.++..|+..+|.+. .+|.....+++.. +.+..+||--.++.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            77777766 44555555666667777666665 3333223333332 33344455544433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.96  E-value=2.5e-05  Score=63.85  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=43.0

Q ss_pred             ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc
Q 046055          348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT  427 (549)
Q Consensus       348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  427 (549)
                      |..+..|+.+.+.. .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            34444444444442 233333444555555555555443 3322333444444555555543 22223334455555666


Q ss_pred             EEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055          428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL  474 (549)
Q Consensus       428 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  474 (549)
                      .+++..+ +.......|... +|+.+.+.+ .+..+....|.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666543 433444445554 666666554 3332444555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.8e-05  Score=65.45  Aligned_cols=100  Identities=14%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG   96 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~   96 (549)
                      +.++|.+.++..  .+.......+...+||++|.+...  ..|..+++|.+|.+++|.|..+.|.--..+++|..|.+.+
T Consensus        22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccc--hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            567777777653  222444667788888988887632  4467778888889999888866666556677888888888


Q ss_pred             CCCccccc-hhccCCCCCceeecCC
Q 046055           97 IGLNGTAP-VFLSLLKNLREMYIGY  120 (549)
Q Consensus        97 ~~~~~~~~-~~~~~l~~L~~L~l~~  120 (549)
                      |++..... .-+..++.|++|.+-+
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecC
Confidence            87765321 2234444555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=7e-05  Score=71.78  Aligned_cols=136  Identities=15%  Similarity=0.238  Sum_probs=69.7

Q ss_pred             ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055          300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN  379 (549)
Q Consensus       300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  379 (549)
                      +..+.+++.|++++|.++ .+|.   -.++|++|.+++|.-....|..+  +++|++|++++|.....+|      ++|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence            344577777777777665 4452   23457777777765444444433  3567777777763221333      2456


Q ss_pred             EEEccCCcCC--CCCccccccCCCCCEEEccCCc-ccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEEC
Q 046055          380 VLSLQNNRFN--GELPEEMFNLKVISLINVSSNN-ISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL  455 (549)
Q Consensus       380 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  455 (549)
                      .|++.++...  +.+|      ++|+.|.+.+++ ... ..+..  -.++|++|++++|... ..|..+.  .+|+.|++
T Consensus       116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            6666554432  1222      245555554322 110 01111  1246777777776654 3333333  46677776


Q ss_pred             CCC
Q 046055          456 SRN  458 (549)
Q Consensus       456 ~~n  458 (549)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.89  E-value=1.9e-07  Score=86.73  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             CCCCCCEEeCCCCc-CccccCccc-cCCCcCceeecccccCcc--cCCccCCCCCCccEEEccCccccccC-----Cccc
Q 046055          182 GLISLTQLDLSLNC-LTGEVPESF-SALKNLSLVQLFKNNLRG--PFPSFVGDYPNLEVLQVWGNNFTGEL-----PENL  252 (549)
Q Consensus       182 ~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l  252 (549)
                      ..++|+.+.++.++ +++.....+ .++++|+.+++..+....  .+...-.+++.|+.+.+++|......     ...-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            34566666666654 222111112 245667777776664432  12222335677777777776543111     1111


Q ss_pred             cCCCCccEEECcCCcc-cccCCccccCCCCccEEeccccc
Q 046055          253 GRNRKLLLLDVSSNQI-EGKIPRDLCKGERLKSLILMQNL  291 (549)
Q Consensus       253 ~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~  291 (549)
                      .....++.+.++++.. .+.....+..+++|+.+++..++
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            2345677777777754 33444556667788887776664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=2e-05  Score=49.77  Aligned_cols=36  Identities=36%  Similarity=0.679  Sum_probs=15.1

Q ss_pred             CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      +|++|++++|+|+ .++..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 22333444444444444444444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7.2e-05  Score=71.69  Aligned_cols=136  Identities=14%  Similarity=0.143  Sum_probs=63.9

Q ss_pred             cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055          277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ  356 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  356 (549)
                      ..+.+++.|++++|.+... |   .-.++|++|.+.++.-...+|..+  .++|+.|++++|......      +.+|+.
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe~  116 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVRS  116 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccce
Confidence            3346666677766655533 2   123356666666643333444333  246667777666321122      234666


Q ss_pred             EEccCceecccCCcccccC-CCCCEEEccCCcCC--CCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055          357 LKVAYNNIAGKIPPSIGNL-TNLNVLSLQNNRFN--GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR  433 (549)
Q Consensus       357 L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  433 (549)
                      |++..+....     +..+ ++|+.|.+.+++-.  ...+..  -.++|+.|++++|... ..|..+.  .+|+.|+++.
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            6665444321     1111 24555655432211  011111  1146667777666644 3333333  4666666665


Q ss_pred             C
Q 046055          434 N  434 (549)
Q Consensus       434 n  434 (549)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            5

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.83  E-value=5.8e-05  Score=61.61  Aligned_cols=122  Identities=17%  Similarity=0.234  Sum_probs=44.1

Q ss_pred             CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS  403 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (549)
                      |..+++|+.+.+.. .+..+....|..++.++.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444455555443 233344444555555555555443 3333444455555555555544 22212233444455666


Q ss_pred             EEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCC
Q 046055          404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS  451 (549)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~  451 (549)
                      .+++..+ +.......|.++ .|+.+.+.. .+......+|.++++||
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            6666543 333344455555 666666655 33334445555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.1e-05  Score=50.85  Aligned_cols=38  Identities=37%  Similarity=0.656  Sum_probs=31.3

Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          448 RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       448 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      ++|++|++++|+|++ ++..+..+++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            579999999999995 45568999999999999999984

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.70  E-value=4e-06  Score=65.71  Aligned_cols=89  Identities=20%  Similarity=0.353  Sum_probs=53.8

Q ss_pred             cCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCC
Q 046055           11 KPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLE   90 (549)
Q Consensus        11 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~   90 (549)
                      .+...|+.++|++|.+.. .|..+..+++-++.+++++|.+. .+|..++.++.|+.|+++.|.+. ..|..+..+.++.
T Consensus        50 ~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            344555666666666654 55555556666666666666666 45666666666666666666665 4555555566666


Q ss_pred             EEEccCCCCccc
Q 046055           91 YLGLNGIGLNGT  102 (549)
Q Consensus        91 ~L~l~~~~~~~~  102 (549)
                      .|+..++.....
T Consensus       127 ~Lds~~na~~ei  138 (177)
T KOG4579|consen  127 MLDSPENARAEI  138 (177)
T ss_pred             HhcCCCCccccC
Confidence            666666555433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.69  E-value=7e-07  Score=83.08  Aligned_cols=322  Identities=16%  Similarity=0.100  Sum_probs=187.1

Q ss_pred             CcccEEEccCCCCC--CcCChhhhhCC-CCCcEEEccCCCCcCC--CCccccCCCCcCEEEccCCcce-eccCccc-cCC
Q 046055           14 MSLKVLNISGNGFQ--DYFPGQIVVGM-TELEVLDAFNNNFTGP--LPVEIVSLKNLKHLSFGGNYFS-GEIPESY-SEI   86 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~--~~~~~~~~~~~-~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~-~~~~~~~-~~l   86 (549)
                      .+.+.+|+..-+..  +-..+.+.+.+ ..|+.|++.+++-.+.  +...-.++++++.|.+.+|... +..-..+ ..+
T Consensus       110 ~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C  189 (483)
T KOG4341|consen  110 SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC  189 (483)
T ss_pred             ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc
Confidence            45566666544432  11222222233 4688899988855432  2222357899999998888622 1111111 457


Q ss_pred             CCCCEEEccCCC-Cccccchh-ccCCCCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCccCCccc----cCC
Q 046055           87 QSLEYLGLNGIG-LNGTAPVF-LSLLKNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGEIPASL----SQL  159 (549)
Q Consensus        87 ~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l----~~l  159 (549)
                      ++|++|++..|. ++...... ...+++|++++++++..+.+.- -..+.+++.++.+...+|.-.  ..+.+    +.+
T Consensus       190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~  267 (483)
T KOG4341|consen  190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYC  267 (483)
T ss_pred             chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccC
Confidence            889999998864 33333332 3478999999999987776522 223445666777766665321  11111    223


Q ss_pred             CCCCeEeccCccccccCC--ccccCCCCCCEEeCCCCcC-ccccCccc-cCCCcCceeecccccC-cccCCccC-CCCCC
Q 046055          160 KLLDALFLQMNKLTGHIH--PELSGLISLTQLDLSLNCL-TGEVPESF-SALKNLSLVQLFKNNL-RGPFPSFV-GDYPN  233 (549)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~-~~~~~  233 (549)
                      .-+..+++..|..-....  ..-..+..|+.++.+++.- .+..-..+ .+.++|+.+-+..|+- ++.....+ .+++.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            345556655653221111  1123457889999887643 22222222 4679999999999863 22222222 35789


Q ss_pred             ccEEEccCccccc--cCCccccCCCCccEEECcCCccc-cc----CCccccCCCCccEEecccccccc-CCCccccCCCC
Q 046055          234 LEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSSNQIE-GK----IPRDLCKGERLKSLILMQNLFSG-PIPEELGACES  305 (549)
Q Consensus       234 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~-~~----~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~  305 (549)
                      |+.+++.++....  .+...-.+++.|+.+.++++... +.    ....-.....++.+.++++.... ...+.+..+++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            9999999886542  12333356799999999988543 22    12223456788999999987653 33356778899


Q ss_pred             CcEEEccCCcCccc--CCccCCCCCCCCEEEeec
Q 046055          306 LTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDH  337 (549)
Q Consensus       306 L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~  337 (549)
                      |+.+++-+++-...  +.....++|+++...+..
T Consensus       428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  428 LERIELIDCQDVTKEAISRFATHLPNIKVHAYFA  461 (483)
T ss_pred             cceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence            99998877754311  222333667776655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=3e-05  Score=80.83  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             CCCCEEEeecCcCccccC--ccccCCCCCCEEEccCceecc-cCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCE
Q 046055          328 PLLKMIELDHNLLSGEIP--ENLSISDSLNQLKVAYNNIAG-KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISL  404 (549)
Q Consensus       328 ~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (549)
                      .+|+.|++++........  ..-..+|+|++|.+.+-.+.. .......++|+|..||+++++++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            467777777754331111  111345777777777655532 1233445667777777777766522  55666667766


Q ss_pred             EEccCCcccc-cCCcccccCCCCcEEECCCCcCcccc------hhhhhCCCCCCEEECCCCccc
Q 046055          405 INVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEI------PKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       405 L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~------~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |.+.+=.+.. .....+-.+++|+.||+|..+.....      .++-..+|+|+.||.++..+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            6666555432 11223445666666666665443211      112233455666666655554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=2.5e-05  Score=68.99  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=62.6

Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSIL  453 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L  453 (549)
                      +.+.+.|++.||.+++.  .....++.|+.|.|+=|+|...  ..+..|+.|++|+|..|.|.+.. ...+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44667788888877522  2334677777788877777633  33667777777777777776432 2345677777777


Q ss_pred             ECCCCcccccCC-----ccccCCCCCCeEe
Q 046055          454 NLSRNQLTGPIP-----TDMQDMMSLTTLD  478 (549)
Q Consensus       454 ~l~~n~i~~~~~-----~~l~~l~~L~~L~  478 (549)
                      .|..|.=.+..+     ..+..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            777775433222     1344566666664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.001  Score=58.87  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCC--cccccCCcccccCCCCcEEECCCCcCccc-chhhh
Q 046055          368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSN--NISGEIPTSISGCISLTTVDFSRNSLSGE-IPKAI  444 (549)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~  444 (549)
                      +.........|+.+.+.+..++ . ...+..+++|++|.++.|  ++..-+......+++|+++++++|+|... ....+
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            4444555667777777777664 1 134556788888888888  55544444445568888888888888732 11234


Q ss_pred             hCCCCCCEEECCCCcccccC---CccccCCCCCCeEeCCCCCCc
Q 046055          445 SQLRDLSILNLSRNQLTGPI---PTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       445 ~~~~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      ..+.+|..|++.+|..+..-   ...|.-+++|++||-.+..=.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            56677888888888776421   123555777777765554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.00013  Score=64.65  Aligned_cols=99  Identities=19%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC-CccccCCCCCCeE
Q 046055          399 LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI-PTDMQDMMSLTTL  477 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L  477 (549)
                      +.+.++|+.-||.+.++  .....|+.|++|.|+-|+|+..  ..+..+++|++|+|+.|.|...- ...+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            55678889999988643  3356789999999999999855  44788899999999999997442 2467889999999


Q ss_pred             eCCCCCCcccCCCC------CCCCCCCccc
Q 046055          478 DLSYNNLNGEVPSG------GHFPAFDEAS  501 (549)
Q Consensus       478 ~l~~n~~~~~~p~~------~~~~~l~~l~  501 (549)
                      .|..|+=.+.-+..      ..+|+|+.++
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999876554432      3467777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.45  E-value=0.0019  Score=57.09  Aligned_cols=125  Identities=20%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             CCEEEccCCcC-CCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC--cCcccchhhhhCCCCCCEEE
Q 046055          378 LNVLSLQNNRF-NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN--SLSGEIPKAISQLRDLSILN  454 (549)
Q Consensus       378 L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--~i~~~~~~~~~~~~~L~~L~  454 (549)
                      .+.+.+++|.- .+.+......+..|+.+++.+..++.  ...+..+++|+.|.++.|  .+....+-....+++|++++
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            34445554422 22344555566778888888887752  234677899999999999  55544444556779999999


Q ss_pred             CCCCccccc-CCccccCCCCCCeEeCCCCCCcccCCCC-----CCCCCCCccccCCC
Q 046055          455 LSRNQLTGP-IPTDMQDMMSLTTLDLSYNNLNGEVPSG-----GHFPAFDEASFAGN  505 (549)
Q Consensus       455 l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~l~~l~l~~n  505 (549)
                      +++|+|... ....+..+.+|..|++.+|.... ....     ..+++|+.++-.+.
T Consensus        98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            999999842 12345667889999999999885 3322     34667777765544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.43  E-value=0.00018  Score=73.75  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=15.2

Q ss_pred             CCCCcEEEccCC-CCcCC-CCccccCCCCcCEEEccC
Q 046055           38 MTELEVLDAFNN-NFTGP-LPVEIVSLKNLKHLSFGG   72 (549)
Q Consensus        38 ~~~L~~L~L~~~-~~~~~-~~~~l~~l~~L~~L~ls~   72 (549)
                      ++.|+.+.+.++ .++.. .......+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            455555555544 22211 112234455555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.00029  Score=72.20  Aligned_cols=35  Identities=26%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             CCCccEEEccCcccccc--CCccccCCCCccEEECcC
Q 046055          231 YPNLEVLQVWGNNFTGE--LPENLGRNRKLLLLDVSS  265 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~  265 (549)
                      ++.|+.+.+.++.-...  .......++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            56777777766633212  223344566777777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.69  E-value=0.018  Score=29.96  Aligned_cols=19  Identities=42%  Similarity=0.770  Sum_probs=9.7

Q ss_pred             cCEEEccCCcceeccCcccc
Q 046055           65 LKHLSFGGNYFSGEIPESYS   84 (549)
Q Consensus        65 L~~L~ls~~~~~~~~~~~~~   84 (549)
                      |++|++++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555555555555 4444343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.95  E-value=0.026  Score=29.36  Aligned_cols=12  Identities=42%  Similarity=0.609  Sum_probs=5.0

Q ss_pred             CcEEECCCCcCc
Q 046055          426 LTTVDFSRNSLS  437 (549)
Q Consensus       426 L~~L~L~~n~i~  437 (549)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.13  E-value=0.012  Score=50.06  Aligned_cols=82  Identities=20%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             CCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCcccc-CCCCCCEEEccCc-cCCccCCccccCCCCCCe
Q 046055           87 QSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG-TLSKLRVLDMASC-NISGEIPASLSQLKLLDA  164 (549)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~  164 (549)
                      ..++.++-+++.+.....+.+.+++.++.|.+.+|..+.+.-.+.++ -.++|+.|++++| .|+......+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34666666666666666666666777777777665554433222222 2457777777777 455444455556666666


Q ss_pred             Eecc
Q 046055          165 LFLQ  168 (549)
Q Consensus       165 L~l~  168 (549)
                      |.+.
T Consensus       181 L~l~  184 (221)
T KOG3864|consen  181 LHLY  184 (221)
T ss_pred             HHhc
Confidence            6554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.28  E-value=0.001  Score=66.45  Aligned_cols=181  Identities=23%  Similarity=0.285  Sum_probs=105.2

Q ss_pred             CCcEEEccCCcCcccCC----ccCCCCCCCCEEEeecCcCccccCc----cccCC-CCCCEEEccCceeccc----CCcc
Q 046055          305 SLTKFRAMKNQLNGTIP----AGIFNLPLLKMIELDHNLLSGEIPE----NLSIS-DSLNQLKVAYNNIAGK----IPPS  371 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~-~~L~~L~l~~n~~~~~----~~~~  371 (549)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+......    .+... ..+++|++..|.++..    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            36777777887764422    3445677888888888887733222    22232 4566677777777633    2334


Q ss_pred             cccCCCCCEEEccCCcCCCC----Ccccc----ccCCCCCEEEccCCcccccC----CcccccCCC-CcEEECCCCcCcc
Q 046055          372 IGNLTNLNVLSLQNNRFNGE----LPEEM----FNLKVISLINVSSNNISGEI----PTSISGCIS-LTTVDFSRNSLSG  438 (549)
Q Consensus       372 ~~~~~~L~~L~l~~n~l~~~----~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~L~~n~i~~  438 (549)
                      +.....++.+++..|.+...    ++..+    ....++++|++.+|.++...    ...+...++ +..|++.+|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            55567777888887766311    11222    23556777777777665211    113334444 6667777777764


Q ss_pred             c----chhhhhCC-CCCCEEECCCCcccccCC----ccccCCCCCCeEeCCCCCCc
Q 046055          439 E----IPKAISQL-RDLSILNLSRNQLTGPIP----TDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       439 ~----~~~~~~~~-~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~  485 (549)
                      .    ....+..+ ..++.++++.|.|+....    +.+..++.++.+.++.|++.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3    22334444 566777777777764332    34455667777777777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.89  E-value=0.12  Score=24.87  Aligned_cols=11  Identities=55%  Similarity=0.754  Sum_probs=3.5

Q ss_pred             CcEEECCCCcC
Q 046055          426 LTTVDFSRNSL  436 (549)
Q Consensus       426 L~~L~L~~n~i  436 (549)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=0.023  Score=48.39  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=35.8

Q ss_pred             CCEEEeecCcCccccCccccCCCCCCEEEccCceeccc--CCcccccCCCCCEEEccCC-cCCCCCccccccCCCCCEEE
Q 046055          330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK--IPPSIGNLTNLNVLSLQNN-RFNGELPEEMFNLKVISLIN  406 (549)
Q Consensus       330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  406 (549)
                      ++.+|-+++.+..++-+.+..+++++.|.+.+|.-.+.  +...-+-.++|+.|++++| +|++..-.++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44555555555544444455555555555555432210  0000012345555555555 34433334444555555554


Q ss_pred             ccC
Q 046055          407 VSS  409 (549)
Q Consensus       407 l~~  409 (549)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.57  E-value=0.1  Score=27.76  Aligned_cols=16  Identities=38%  Similarity=0.578  Sum_probs=7.4

Q ss_pred             CCCcEEECCCCcCccc
Q 046055          424 ISLTTVDFSRNSLSGE  439 (549)
Q Consensus       424 ~~L~~L~L~~n~i~~~  439 (549)
                      ++|++|+|++|+|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4555555555555543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.19  E-value=0.0037  Score=62.57  Aligned_cols=182  Identities=24%  Similarity=0.189  Sum_probs=102.3

Q ss_pred             ccEEEccCCCCCCcCChhhhh---CCCCCcEEEccCCCCcCCCCc----cccCC-CCcCEEEccCCcceec----cCccc
Q 046055           16 LKVLNISGNGFQDYFPGQIVV---GMTELEVLDAFNNNFTGPLPV----EIVSL-KNLKHLSFGGNYFSGE----IPESY   83 (549)
Q Consensus        16 L~~L~Ls~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~----~l~~l-~~L~~L~ls~~~~~~~----~~~~~   83 (549)
                      +.++.|.+|.+.+.....+..   ....|+.|++++|.+.+....    .+... ..|++|++..|.+.+.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777765433332222   345667777777776642211    12222 4566666666655432    33445


Q ss_pred             cCCCCCCEEEccCCCCccc----cchh----ccCCCCCceeecCCccccCc----cCCccccCCCC-CCEEEccCccCCc
Q 046055           84 SEIQSLEYLGLNGIGLNGT----APVF----LSLLKNLREMYIGYFNTYTG----GIPPEFGTLSK-LRVLDMASCNISG  150 (549)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~----~~~~----~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~-L~~L~l~~~~i~~  150 (549)
                      .....++.++++.|.+...    .+..    +....++++|+++++. ++.    .+...+...+. +..+++..|.+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5566777777777665321    1111    2245667777777632 221    11223444444 6668888887764


Q ss_pred             c----CCccccCC-CCCCeEeccCccccccCCcc----ccCCCCCCEEeCCCCcCcc
Q 046055          151 E----IPASLSQL-KLLDALFLQMNKLTGHIHPE----LSGLISLTQLDLSLNCLTG  198 (549)
Q Consensus       151 ~----~~~~l~~l-~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~  198 (549)
                      .    ....+..+ ..+++++++.|.+.......    +..++.++++.++.|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3    12234444 56788888888877554332    4556788888888887764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.62  E-value=0.006  Score=52.93  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=44.9

Q ss_pred             CCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCcee
Q 046055           37 GMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREM  116 (549)
Q Consensus        37 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  116 (549)
                      .++..++||++.|++. -+-..|+-++.|..|+++.|.+. ..|..+.+...++++++..|..+ ..|..++..++++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            4555666666666554 23344555555666666666555 55555555555555555554433 445555566666665


Q ss_pred             ecCC
Q 046055          117 YIGY  120 (549)
Q Consensus       117 ~l~~  120 (549)
                      +...
T Consensus       117 e~k~  120 (326)
T KOG0473|consen  117 EQKK  120 (326)
T ss_pred             hhcc
Confidence            5544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.14  E-value=0.4  Score=25.94  Aligned_cols=13  Identities=46%  Similarity=0.662  Sum_probs=6.1

Q ss_pred             CCcEEECCCCcCc
Q 046055          425 SLTTVDFSRNSLS  437 (549)
Q Consensus       425 ~L~~L~L~~n~i~  437 (549)
                      +|+.|+|++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.14  E-value=0.4  Score=25.94  Aligned_cols=13  Identities=46%  Similarity=0.662  Sum_probs=6.1

Q ss_pred             CCcEEECCCCcCc
Q 046055          425 SLTTVDFSRNSLS  437 (549)
Q Consensus       425 ~L~~L~L~~n~i~  437 (549)
                      +|+.|+|++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.77  E-value=0.37  Score=26.10  Aligned_cols=16  Identities=44%  Similarity=0.526  Sum_probs=8.9

Q ss_pred             CCCCEEECCCCccccc
Q 046055          448 RDLSILNLSRNQLTGP  463 (549)
Q Consensus       448 ~~L~~L~l~~n~i~~~  463 (549)
                      ++|+.|++++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.77  E-value=0.37  Score=26.10  Aligned_cols=16  Identities=44%  Similarity=0.526  Sum_probs=8.9

Q ss_pred             CCCCEEECCCCccccc
Q 046055          448 RDLSILNLSRNQLTGP  463 (549)
Q Consensus       448 ~~L~~L~l~~n~i~~~  463 (549)
                      ++|+.|++++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.10  E-value=0.016  Score=50.35  Aligned_cols=86  Identities=17%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      ......+.||++.|++. .....|..++.+.+++++.|.+. ..|..+.....++.++...|... ..|.++...++++.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            33445555555555554 22233444555566666666654 55556665556666666665554 55556666666666


Q ss_pred             EECCCCcCc
Q 046055          429 VDFSRNSLS  437 (549)
Q Consensus       429 L~L~~n~i~  437 (549)
                      +++.++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            666666543

>TIGR00864 PCC polycystin cation channel protein

Probab=81.53  E-value=0.36  Score=57.29  Aligned_cols=46  Identities=17%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             eCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCcccc
Q 046055          478 DLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSIYSA  523 (549)
Q Consensus       478 ~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~  523 (549)
                      ||++|+|..+.+.. ..+++|+.|+|.+|||.|+|++.....|+...
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~   47 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK   47 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence            46677777333322 34667788888889999999887655555444

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	549
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-20
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 249/570 (43%), Gaps = 85/570 (14%)
Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L+ L+ISGN     F  + +   TEL++L+  +N F GP+P   + LK+L++LS   N 
Sbjct: 221 ALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 75  FSGEIPESYS-EIQSLEYLGLNGIGLNGTAPVFL-----------------------SLL 110
           F+GEIP+  S    +L  L L+G    G  P F                        +LL
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 111 KNLREMYIG--YFNTYTGGIPPEFGTLS-KLRVLDMASCNISGEIPASLSQ--LKLLDAL 165
           K +R + +    FN ++G +P     LS  L  LD++S N SG I  +L Q     L  L
Sbjct: 338 K-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
           +LQ N  TG I P LS    L  L LS N L+G +P S  +L  L  ++L+ N L G  P
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 226 SFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
             +     LE L +  N+ TGE+P  L     L  + +S+N++ G+IP+ + + E L  L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-------------------- 325
            L  N FSG IP ELG C SL       N  NGTIPA +F                    
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 326 NLPLLKMIELDHNLL--SGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
           N  + K      NLL   G   E L+   + N   +      G   P+  N  ++  L +
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 384 QNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
             N  +G +P+E+ ++              G IP  +     L  +D S N L G IP+A
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 444 ISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA 503
           +S L  L+ ++LS N L+GPI                        P  G F  F  A F 
Sbjct: 697 MSALTMLTEIDLSNNNLSGPI------------------------PEMGQFETFPPAKFL 732
Query: 504 GNPNLC---LPRNVTCLPSIYSAQHSHASS 530
            NP LC   LPR   C PS       H  S
Sbjct: 733 NNPGLCGYPLPR---CDPSNADGYAHHQRS 759

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 247/559 (44%), Gaps = 85/559 (15%)
Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L+ L+ISGN     F  + +   TEL++L+  +N F GP+P   + LK+L++LS   N 
Sbjct: 224 ALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 75  FSGEIPESYS-EIQSLEYLGLNGIGLNGTAPVFL-----------------------SLL 110
           F+GEIP+  S    +L  L L+G    G  P F                        +LL
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 111 KNLREMYIG--YFNTYTGGIPPEFGTLS-KLRVLDMASCNISGEIPASLSQ--LKLLDAL 165
           K +R + +    FN ++G +P     LS  L  LD++S N SG I  +L Q     L  L
Sbjct: 341 K-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
           +LQ N  TG I P LS    L  L LS N L+G +P S  +L  L  ++L+ N L G  P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 226 SFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
             +     LE L +  N+ TGE+P  L     L  + +S+N++ G+IP+ + + E L  L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-------------------- 325
            L  N FSG IP ELG C SL       N  NGTIPA +F                    
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 326 NLPLLKMIELDHNLL--SGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
           N  + K      NLL   G   E L+   + N   +      G   P+  N  ++  L +
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 384 QNNRFNGELPEEMFNLKXXXXXXXXXXXXXGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
             N  +G +P+E+ ++              G IP  +     L  +D S N L G IP+A
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 444 ISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA 503
           +S L  L+ ++LS N L+GPI                        P  G F  F  A F 
Sbjct: 700 MSALTMLTEIDLSNNNLSGPI------------------------PEMGQFETFPPAKFL 735
Query: 504 GNPNLC---LPRNVTCLPS 519
            NP LC   LPR   C PS
Sbjct: 736 NNPGLCGYPLPR---CDPS 751

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 159/407 (39%), Gaps = 99/407 (24%)
Query: 175 HIHPELSGL---ISLTQLDLSLNCLTGEVP--ESFSALKNLSLVQLFKNNLRGPFPSFVG 229
           HI+  +SG     SLT LDLS N L+G V    S  +   L  + +  N L   FP  V 
Sbjct: 88  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVS 145
Query: 230 DYPNLEVLQV---------------W---------------GNNFTGELPENLGRNRKLL 259
               L  L+V               W               GN  +G++  ++ R   L 
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLE 203
Query: 260 LLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT 319
            LDVSSN     IP  L     L+ L +  N  SG     +  C  L       NQ  G 
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 320 IPAGIFNLPL--LKMIELDHNLLSGEIPENLS-ISDSLNQLKVAYNNIAGKIPPSIG--- 373
           IP     LPL  L+ + L  N  +GEIP+ LS   D+L  L ++ N+  G +PP  G   
Sbjct: 263 IPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 374 ----------------------NLTNLNVLSLQNNRFNGELPEEMFNLKXXXXXXXXXXX 411
                                  +  L VL L  N F+GELPE + NL            
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 412 X---------------------------XGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
                                        G+IP ++S C  L ++  S N LSG IP ++
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
             L  L  L L  N L G IP ++  + +L TL L +N+L GE+PSG
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 26/240 (10%)
Query: 295 PIPEELGACESLT-KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353
           PIP  L     L   +    N L G IP  I  L  L  + + H  +SG IP+ LS   +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL-KXXXXXXXXXXXX 412
           L  L  +YN ++G +PPSI +L NL  ++   NR +G +P+   +  K            
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 413 XGEIPTSISGCISLTTVDFSRNSLSGE-------------IPKAISQL----------RD 449
            G+IP + +  ++L  VD SRN L G+             I  A + L          ++
Sbjct: 187 TGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509
           L+ L+L  N++ G +P  +  +  L +L++S+NNL GE+P GG+   FD +++A N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS--FVGDYPNLEVLQVWGN 242
           S T L+ + N  T  V +  S LK L  + L +N L+  F       +  +LE L V  N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 243 NFTGE-LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELG 301
           +               +L+L++SSN + G + R  C   ++K L L  N     IP+++ 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMS-IPKDVT 470
Query: 302 ACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
             ++L +     NQL  ++P G+F+ L  L+ I L  N      P    +S+ +N+    
Sbjct: 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529
Query: 361 YNNIAGKIPP 370
             N AG + P
Sbjct: 530 VRNSAGSVAP 539

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	549
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-151
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-119
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-115
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  451 bits (1162), Expect = e-151
 Identities = 169/524 (32%), Positives = 243/524 (46%), Gaps = 16/524 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIV-SLKNLKHLSFGGN 73
            LK+LNIS N F    P      +  L+ L    N FTG +P  +  +   L  L   GN
Sbjct: 248 ELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPV-FLSLLKNLREMYIGYFNTYTGGIPPEF 132
           +F G +P  +     LE L L+    +G  P+  L  ++ L+ + + + N ++G +P   
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-NEFSGELPESL 363

Query: 133 GTLS-KLRVLDMASCNISGEIPASLSQLKL--LDALFLQMNKLTGHIHPELSGLISLTQL 189
             LS  L  LD++S N SG I  +L Q     L  L+LQ N  TG I P LS    L  L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
            LS N L+G +P S  +L  L  ++L+ N L G  P  +     LE L +  N+ TGE+P
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
             L     L  + +S+N++ G+IP+ + + E L  L L  N FSG IP ELG C SL   
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYN--NIAGK 367
               N  NGTIPA +F         +  N ++G+    +       +   A N     G 
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427
               +  L+  N  ++ +  + G       N   +  +++S N +SG IP  I     L 
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
            ++   N +SG IP  +  LR L+IL+LS N+L G IP  M  +  LT +DLS NNL+G 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 488 VPSGGHFPAFDEASFAGNPNLC-LPRNVTCLPSIYSAQHSHASS 530
           +P  G F  F  A F  NP LC  P       +     H   S 
Sbjct: 720 IPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSH 763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  367 bits (944), Expect = e-119
 Identities = 156/488 (31%), Positives = 230/488 (47%), Gaps = 19/488 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLP--VEIVSLKNLKHLSFGG 72
            L+ L +S +       G        L  LD   N+ +GP+     + S   LK L+   
Sbjct: 78  GLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 73  NYFSGEIPESY-SEIQSLEYLGLNGIGLNGTAPVFLSL---LKNLREMYIGYFNTYTGGI 128
           N        S   ++ SLE L L+   ++G   V   L      L+ + I   N  +G +
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-NKISGDV 194

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
                    L  LD++S N S  IP  L     L  L +  NKL+G     +S    L  
Sbjct: 195 D--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP-SFVGDYPNLEVLQVWGNNFTGE 247
           L++S N   G +P     LK+L  + L +N   G  P    G    L  L + GN+F G 
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 248 LPENLGRNRKLLLLDVSSNQIEGKIPRD-LCKGERLKSLILMQNLFSGPIPEELGAC-ES 305
           +P   G    L  L +SSN   G++P D L K   LK L L  N FSG +PE L     S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPL--LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
           L       N  +G I   +   P   L+ + L +N  +G+IP  LS    L  L +++N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 364 IAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC 423
           ++G IP S+G+L+ L  L L  N   GE+P+E+  +K +  + +  N+++GEIP+ +S C
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
            +L  +  S N L+GEIPK I +L +L+IL LS N  +G IP ++ D  SL  LDL+ N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 484 LNGEVPSG 491
            NG +P+ 
Sbjct: 550 FNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  358 bits (922), Expect = e-115
 Identities = 147/486 (30%), Positives = 222/486 (45%), Gaps = 20/486 (4%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVG-MTELEVLDAFNNNFTGPLPVEIV-SLKNLKHLSFGG 72
           SL  L++S N           +G  + L+ L+  +N    P  V     L +L+ L    
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 73  NYFSGEIPESY---SEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
           N  SG     +        L++L ++G  ++G     +S   NL  + +   N ++ GIP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS-NNFSTGIP 217

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
              G  S L+ LD++   +SG+   ++S    L  L +  N+  G I P    L SL  L
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274

Query: 190 DLSLNCLTGEVPESFSA-LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
            L+ N  TGE+P+  S     L+ + L  N+  G  P F G    LE L +  NNF+GEL
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 249 P-ENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGAC--E 304
           P + L + R L +LD+S N+  G++P  L      L +L L  N FSGPI   L      
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI 364
           +L +     N   G IP  + N   L  + L  N LSG IP +L     L  LK+  N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI 424
            G+IP  +  +  L  L L  N   GE+P  + N   ++ I++S+N ++GEIP  I    
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +L  +  S NS SG IP  +   R L  L+L+ N   G IP  M       +  ++ N +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFI 570

Query: 485 NGEVPS 490
            G+   
Sbjct: 571 AGKRYV 576

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  351 bits (904), Expect = e-113
 Identities = 134/490 (27%), Positives = 225/490 (45%), Gaps = 22/490 (4%)

Query: 15  SLKVLNISGNGFQDYFPGQI---VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
            +  +++S       F   +   ++ +T LE L   N++  G +        +L  L   
Sbjct: 51  KVTSIDLSSKPLNVGF-SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 72  GNYFSGEIPESYS--EIQSLEYLGLNGIGLNGTAPV-FLSLLKNLREMYIGYFNTYTGGI 128
            N  SG +    S      L++L ++   L+    V     L +L  + +   N+ +G  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA-NSISGAN 167

Query: 129 PPEF---GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS 185
              +       +L+ L ++   ISG++   +S+   L+ L +  N  +  I P L    +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSA 224

Query: 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
           L  LD+S N L+G+   + S    L L+ +  N   GP P       +L+ L +  N FT
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282

Query: 246 GELPENLGRN-RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE-LGAC 303
           GE+P+ L      L  LD+S N   G +P        L+SL L  N FSG +P + L   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 304 ESLTKFRAMKNQLNGTIPAGIFNLPL-LKMIELDHNLLSGEIPENL--SISDSLNQLKVA 360
             L       N+ +G +P  + NL   L  ++L  N  SG I  NL  +  ++L +L + 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 361 YNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSI 420
            N   GKIPP++ N + L  L L  N  +G +P  + +L  +  + +  N + GEIP  +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 421 SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480
               +L T+    N L+GEIP  +S   +L+ ++LS N+LTG IP  +  + +L  L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 481 YNNLNGEVPS 490
            N+ +G +P+
Sbjct: 523 NNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  254 bits (650), Expect = 9e-76
 Identities = 108/369 (29%), Positives = 169/369 (45%), Gaps = 20/369 (5%)

Query: 136 SKLRVLDMASCNIS---GEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLS 192
            K+  +D++S  ++     + +SL  L  L++LFL  + + G +        SLT LDLS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLS 108

Query: 193 LNCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFP-SFVGDYPNLEVLQVWGNNFTGELP 249
            N L+G V    S  +   L  + +  N L  P   S      +LEVL +  N+ +G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 250 ENLGRN---RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESL 306
                +    +L  L +S N+I G +   + +   L+ L +  N FS  IP  LG C +L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSAL 225

Query: 307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG 366
                  N+L+G     I     LK++ +  N   G IP       SL  L +A N   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

Query: 367 KIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT-SISGCI 424
           +IP  + G    L  L L  N F G +P    +  ++  + +SSNN SGE+P  ++    
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 425 SLTTVDFSRNSLSGEIPKAISQLR-DLSILNLSRNQLTGPIPTDM--QDMMSLTTLDLSY 481
            L  +D S N  SGE+P++++ L   L  L+LS N  +GPI  ++      +L  L L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 482 NNLNGEVPS 490
           N   G++P 
Sbjct: 404 NGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  232 bits (594), Expect = 8e-68
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 155 SLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214
              ++  +D     +N     +   L  L  L  L LS + + G V   F    +L+ + 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 215 LFKNNLRGPFPSFV--GDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVSSNQIEGK 271
           L +N+L GP  +    G    L+ L V  N        + G     L +LD+S+N I G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 272 IPRDLCKGE---RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP 328
                   +    LK L +  N  SG +   +  C +L       N  +  IP  + +  
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223

Query: 329 LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
            L+ +++  N LSG+    +S    L  L ++ N   G IPP    L +L  LSL  N+F
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281

Query: 389 NGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPK-AISQ 446
            GE+P+ +      ++ +++S N+  G +P     C  L ++  S N+ SGE+P   + +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 447 LRDLSILNLSRNQLTGPIPTDMQDM-MSLTTLDLSYNNLNGEVPSG 491
           +R L +L+LS N+ +G +P  + ++  SL TLDLS NN +G +   
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 9e-38
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 13/223 (5%)

Query: 277 CKGERLKSLIL---MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI 333
           C+ +++ S+ L     N+    +   L +   L       + +NG++  G      L  +
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSL 105

Query: 334 ELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNG 390
           +L  N LSG +    S+     L  L V+ N +           L +L VL L  N  +G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 391 ELPEEMF---NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL 447
                         +  + +S N ISG++   +S C++L  +D S N+ S  IP  +   
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 448 RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
             L  L++S N+L+G     +     L  L++S N   G +P 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 2e-26
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 9/164 (5%)

Query: 338 NLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPE--E 395
           N+    +  +L     L  L ++ ++I G +        +L  L L  N  +G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 396 MFNLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAI---SQLRDLS 451
           + +   +  +NVSSN +      S      SL  +D S NS+SG             +L 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 452 ILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP 495
            L +S N+++G +   +   ++L  LD+S NN +  +P  G   
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  244 bits (626), Expect = 5e-77
 Identities = 71/272 (26%), Positives = 133/272 (48%), Gaps = 6/272 (2%)

Query: 242 NNFTGELPENLGRNRKLLLLDVSSNQIEG--KIPRDLCKGERLKSLILM-QNLFSGPIPE 298
             + G L +   +  ++  LD+S   +     IP  L     L  L +   N   GPIP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK 358
            +     L         ++G IP  +  +  L  ++  +N LSG +P ++S   +L  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 359 VAYNNIAGKIPPSIGNLTNL-NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP 417
              N I+G IP S G+ + L   +++  NR  G++P    NL  ++ +++S N + G+  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 418 TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTL 477
                  +   +  ++NSL+ ++ K +   ++L+ L+L  N++ G +P  +  +  L +L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 478 DLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509
           ++S+NNL GE+P GG+   FD +++A N  LC
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (493), Expect = 2e-57
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 52/322 (16%)

Query: 68  LSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTA--PVFLSLLKNLREMYIGYFNTYT 125
                  + G + ++ ++   +  L L+G+ L      P  L+ L  L  +YIG  N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 126 GGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS 185
           G IPP    L++L  L +   N+SG IP  LSQ+K L  L    N L+G + P +S L +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
           L  +    N ++G +P+S+ +   L                          + +  N  T
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLT 187

Query: 246 GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACES 305
           G++P     N  L  +D+S N +EG         +  + + L +N  +  + +       
Sbjct: 188 GKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------- 239

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA 365
                             +     L  ++L +N + G +P+ L+    L+ L V++NN+ 
Sbjct: 240 ------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 366 GKIPPSIGNLTNLNVLSLQNNR 387
           G+I P  GNL   +V +  NN+
Sbjct: 282 GEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (450), Expect = 3e-51
 Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 7/241 (2%)

Query: 37  GMTELEVLDAFNNNFTG--PLPVEIVSLKNLKHLSFGG-NYFSGEIPESYSEIQSLEYLG 93
               +  LD    N     P+P  + +L  L  L  GG N   G IP + +++  L YL 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 94  LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIP 153
           +    ++G  P FLS +K L  +    +N  +G +PP   +L  L  +      ISG IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDF-SYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 154 ASLSQL-KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
            S     KL  ++ +  N+LTG I P  + L +L  +DLS N L G+    F + KN   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKI 272
           + L KN+L        G   NL  L +  N   G LP+ L + + L  L+VS N + G+I
Sbjct: 226 IHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 273 P 273
           P
Sbjct: 285 P 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (432), Expect = 1e-48
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 5/230 (2%)

Query: 15  SLKVLNISG-NGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
            L  L I G N      P  I   +T+L  L   + N +G +P  +  +K L  L F  N
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
             SG +P S S + +L  +  +G  ++G  P        L        N  TG IPP F 
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            L+ L  +D++   + G+        K    + L  N L   +  ++    +L  LDL  
Sbjct: 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
           N + G +P+  + LK L  + +  NNL G  P   G+    +V     N 
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 77/187 (41%)

Query: 13  KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGG 72
            ++L  +++S                          N   G   V   S KN + +    
Sbjct: 196 NLNLAFVDLS-------------------------RNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 73  NYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF 132
           N  + ++                                                   + 
Sbjct: 231 NSLAFDL--------------------------------------------------GKV 240

Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLS 192
           G    L  LD+ +  I G +P  L+QLK L +L +  N L G I P+   L        +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYA 299

Query: 193 LN-CLTG 198
            N CL G
Sbjct: 300 NNKCLCG 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (636), Expect = 2e-74
 Identities = 102/517 (19%), Positives = 175/517 (33%), Gaps = 27/517 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           ++ VLN++ N  +           ++L  LD   N  +   P     L  LK L+   N 
Sbjct: 26  NITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            S    ++++   +L  L L    +           KNL  + + + N  +         
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQ 143

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKL--LDALFLQMNKLTGHIHPELSGLISLTQLDLS 192
           L  L+ L +++  I       L       L  L L  N++          +  L  L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 193 LNCLTGEVPESFS---ALKNLSLVQLFKNNLRG-PFPSFVG-DYPNLEVLQVWGNNFTGE 247
              L   + E      A  ++  + L  + L      +F+G  + NL +L +  NN    
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 248 LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL---------FSGPIPE 298
             ++     +L    +  N I+      L     ++ L L ++                 
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD----SL 354
                + L       N + G        L  LK + L ++  S     N +        L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNIS 413
           + L +  N I+     +   L +L VL L  N    EL  + +  L+ I  I +S N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 414 GEIPTSISGCISLTTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDM 471
                S +   SL  +   R +L      P     LR+L+IL+LS N +       ++ +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 472 MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
             L  LDL +NNL          P        G  +L
Sbjct: 504 EKLEILDLQHNNL--ARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  233 bits (597), Expect = 6e-69
 Identities = 97/552 (17%), Positives = 182/552 (32%), Gaps = 35/552 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L  L++  N  Q        V    L  LD  +N  +       V L+NL+ L    N 
Sbjct: 98  NLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 75  FSGEIPE--SYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF 132
                 E        SL+ L L+   +   +P     +  L  +++         +  + 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN-VQLGPSLTEKL 215

Query: 133 G---TLSKLRVLDMASCNISGEIPASLSQLKL--LDALFLQMNKLTGHIHPELSGLISLT 187
                 + +R L +++  +S     +   LK   L  L L  N L    +   + L  L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKN---------NLRGPFPSFVGDYPNLEVLQ 238
              L  N +      S   L N+  + L ++         +L             LE L 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGK-IPRDLCKG---ERLKSLILMQNLFSG 294
           +  N+  G           L  L +S++    + +  +         L  L L +N  S 
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDS 353
              +       L       N++   +    +  L  +  I L +N        + ++  S
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 354 LNQLKVAYNNIAG--KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN 411
           L +L +    +      P     L NL +L L NN       + +  L+ + ++++  NN
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 412 IS--------GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463
           ++        G     + G   L  ++   N       +    L +L I++L  N L   
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 464 IPTDMQDMMSLTTLDLSYNNLNGEVPS--GGHFPAFDEASFAGNPNLCLPRNVTCLPSIY 521
             +   + +SL +L+L  N +        G  F    E     NP  C   ++    +  
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 522 SAQHSHASSFST 533
           +  H++    S+
Sbjct: 636 NETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 2e-60
 Identities = 101/441 (22%), Positives = 161/441 (36%), Gaps = 33/441 (7%)

Query: 88  SLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCN 147
           S E    + + L     V   L  N+  + +   N         F   S+L  LD+    
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 148 ISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
           IS   P    +L +L  L LQ N+L+       +   +LT+L L  N +       F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG--RNRKLLLLDVSS 265
           KNL  + L  N L            NL+ L +  N       E L    N  L  L++SS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK---NQLNGTIPA 322
           NQI+   P       RL  L L        + E+L    + T  R +    +QL+ T   
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 323 GIFNLPL--LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNV 380
               L    L M++L +N L+    ++ +    L    + YNNI      S+  L N+  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 381 LSLQNNRFNGEL---------PEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
           L+L+ +     +               LK +  +N+  N+I G      +G I+L  +  
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 432 SRNSLSGEIPKAIS----QLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
           S +  S       +        L ILNL++N+++         +  L  LDL  N +  E
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 488 VPSGGHFPAFDEASFAGNPNL 508
           +             + G  N+
Sbjct: 421 LTGQ---------EWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  205 bits (523), Expect = 2e-58
 Identities = 99/522 (18%), Positives = 172/522 (32%), Gaps = 60/522 (11%)

Query: 14  MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI---VSLKNLKHLSF 70
            SLK L +S N  +++ PG     +  L  L   N      L  ++   ++  ++++LS 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 71  GGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP 130
             +  S     ++              GL  T    L L           +N        
Sbjct: 230 SNSQLSTTSNTTFL-------------GLKWTNLTMLDL----------SYNNLNVVGND 266

Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
            F  L +L    +   NI      SL  L  +  L L+ +                T+  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------FTKQS 311

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE 250
           +SL  L      SF  LK L  + +  N++ G   +      NL+ L +  +  +     
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 251 NLG----RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP-EELGACES 305
           N       +  L +L+++ N+I             L+ L L  N     +  +E    E+
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG--EIPENLSISDSLNQLKVAYNN 363
           + +     N+           +P L+ + L    L      P       +L  L ++ NN
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 364 IAGKIPPSIGNLTNLNVLSLQNNR--------FNGELPEEMFNLKVISLINVSSNNISGE 415
           IA      +  L  L +L LQ+N           G     +  L  + ++N+ SN     
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 416 IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM-SL 474
                     L  +D   N+L+       +    L  LNL +N +T            +L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 475 TTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTC 516
           T LD+ +N  +    S   F  +   +    P   L  +  C
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPE--LSSHYLC 651

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 1e-47
 Identities = 73/332 (21%), Positives = 126/332 (37%), Gaps = 11/332 (3%)

Query: 184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
           +S    D S   LT +VP+      N++++ L  N LR    +    Y  L  L V  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 244 FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGAC 303
            +   PE   +   L +L++  N++     +       L  L LM N             
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAY 361
           ++L       N L+ T       L  L+ + L +N +     E L I    SL +L+++ 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 362 NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF---NLKVISLINVSSNNISGEIPT 418
           N I    P     +  L  L L N +    L E++        I  +++S++ +S    T
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 419 SISGC--ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTT 476
           +  G    +LT +D S N+L+     + + L  L    L  N +       +  + ++  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 477 LDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
           L+L   +   +  S    P  D+ SF     L
Sbjct: 301 LNLK-RSFTKQSISLASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (417), Expect = 9e-44
 Identities = 76/416 (18%), Positives = 138/416 (33%), Gaps = 43/416 (10%)

Query: 12  PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
              +L +L++S N             + +LE      NN        +  L N+++L+  
Sbjct: 246 KWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 72  GNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE 131
            +                    ++   L          LK L  + +   N   G     
Sbjct: 305 RS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMED-NDIPGIKSNM 348

Query: 132 FGTLSKLRVLDMASCNISGEIPASLS----QLKLLDALFLQMNKLTGHIHPELSGLISLT 187
           F  L  L+ L +++   S     + +        L  L L  NK++       S L  L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 188 QLDLSLNCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
            LDL LN +  E+  + +  L+N+  + L  N       +     P+L+ L +       
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 247 --ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
               P      R L +LD+S+N I       L   E+L+ L L  N  +           
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----------- 517

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI 364
                R  K+   G     +  L  L ++ L+ N       E       L  + +  NN+
Sbjct: 518 -----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPT 418
                    N  +L  L+LQ N     + +++F    + ++ +++  N       +
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  240 bits (615), Expect = 7e-72
 Identities = 71/505 (14%), Positives = 153/505 (30%), Gaps = 48/505 (9%)

Query: 14  MSLKVLNISGNGFQDYFPGQI-VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGG 72
           MS +        +Q  F         ++L      ++     +            +    
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 73  NYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF 132
           N  +  + ++   +  L    +                +N        +         ++
Sbjct: 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE------YAQQYKTEDLKW 245

Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT--------GHIHPELSGLI 184
             L  L  +++ +C    ++P  L  L  +  + +  N+               +     
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 185 SLTQLDLSLNCLT-GEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
            +  + +  N L    V  S   +K L +++   N L G  P+F G    L  L +  N 
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQ 364

Query: 244 FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG--ERLKSLILMQNLFSG------- 294
            T       G   ++  L  + N+++  IP          + ++    N           
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG-------EIPEN 347
           P+        +++      NQ++            L  I L  N+L+        +  EN
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 348 LSISDSLNQLKVAYNNIAGKIPPSI--GNLTNLNVLSLQNNRFNGELPEEMFNLK----- 400
              +  L  + + +N +   +        L  L  + L  N F+   P +  N       
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 401 -VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459
            + +  +   N    E P  I+ C SLT +    N +   + + I    ++S+L++  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 460 LTGPIPTDMQDMMSLTTLDLSYNNL 484
                 + +   +      L Y+  
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  229 bits (587), Expect = 9e-68
 Identities = 84/508 (16%), Positives = 167/508 (32%), Gaps = 61/508 (12%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGP----LPVEIVSLKNLKHLSF 70
            +  L++ G G     P  I   +TELEVL   ++          P  I +  + +    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 71  GGNYFSGEIPESYSEIQ--SLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGI 128
              ++     +         L    +N      +      +     +  IG  +     +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ--IGQLSNNITFV 198

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
                 L+KLR   M +     E      + +       +  +       +   L  LT 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTD 253

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR--------GPFPSFVGDYPNLEVLQVW 240
           +++       ++P    AL  + L+ +  N               +       ++++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 241 GNNFT-GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
            NN     +  +L + +KL +L+   NQ+EGK+P       +L SL L  N  +      
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF 372

Query: 300 LGACESLTKFRAMKNQLNGTIPA--GIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357
            G  E +       N+L   IP      ++ ++  I+  +N +     +N          
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD-------- 423

Query: 358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG--- 414
                     + P+     N++ ++L NN+ +    E       +S IN+  N ++    
Sbjct: 424 ---------PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 415 ----EIPTSISGCISLTTVDFSRNSLSGEIPKAI--SQLRDLSILNLSRNQLTGPIPTDM 468
               +   +      LT++D   N L+  +      + L  L  ++LS N  +   PT  
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 469 QDMMSLTTL------DLSYNNLNGEVPS 490
            +  +L         D   N    E P 
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  225 bits (576), Expect = 3e-66
 Identities = 81/480 (16%), Positives = 158/480 (32%), Gaps = 63/480 (13%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSG----EIPESYSEIQSLEYLG 93
              +  L       +G +P  I  L  L+ L+ G +          P+  S   S E   
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 94  LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIP 153
              +    T   +                             S L    + S      I 
Sbjct: 140 KMRMHYQKTFVDYDPRE-----------------------DFSDLIKDCINSDPQQKSIK 176

Query: 154 ASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV 213
            S         +    N +T  +   +  L  L Q  +  +    E        +N    
Sbjct: 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY- 234

Query: 214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQI----- 268
                           +  +L  ++V+      +LP  L    ++ L++V+ N+      
Sbjct: 235 ----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 269 ---EGKIPRDLCKGERLKSLILMQN-LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI 324
              + +   D   GE+++ + +  N L + P+   L   + L     + NQL G +PA  
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-F 349

Query: 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP--SIGNLTNLNVLS 382
            +   L  + L +N ++         ++ +  L  A+N +   IP      +++ ++ + 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAID 408

Query: 383 LQNNRFNG-------ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
              N            L    F    +S IN+S+N IS       S    L++++   N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 436 LSG-------EIPKAISQLRDLSILNLSRNQLTGPIPTDMQD--MMSLTTLDLSYNNLNG 486
           L+        +  +       L+ ++L  N+LT  +  D +   +  L  +DLSYN+ + 
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (526), Expect = 4e-59
 Identities = 73/452 (16%), Positives = 140/452 (30%), Gaps = 52/452 (11%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGI 97
           +T+L      N+ F      E    +N ++               +  ++ L  + +   
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNC 259

Query: 98  GLNGTAPVFLSLLKNLREMYIGY-------FNTYTGGIPPEFGTLSKLRVLDMASCNI-S 149
                 P FL  L  ++ + +                   +     K++++ +   N+ +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 150 GEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKN 209
             +  SL ++K L  L    N+L G + P     I L  L+L+ N +T          + 
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 210 LSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTG-------ELPENLGRNRKLLLL 261
           +  +    N L+  P          +  +    N            L     +   +  +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 262 DVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG-------PIPEELGACESLTKFRAMKN 314
           ++S+NQI          G  L S+ LM N+ +           E       LT      N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 315 QLNGTIPAGIF--NLPLLKMIELDHNLLSGEIPE------NLSISDSLNQLKVAYNNIAG 366
           +L   +        LP L  I+L +N  S   P        L      NQ     N    
Sbjct: 499 KLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCIS 425
           + P  I    +L  L + +N     + E++  N+ V+   ++  N       + +   I 
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDLSYVCPYIE 612

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
                   +            +R    L++ R
Sbjct: 613 AGMYMLFYDK--------TQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (501), Expect = 1e-55
 Identities = 49/384 (12%), Positives = 123/384 (32%), Gaps = 32/384 (8%)

Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG----HIHPELSGLISL 186
              +  ++  L +     SG +P ++ QL  L+ L L  +             +S  +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLF--KNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
            Q             +         L++     +  +               +    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
           T  + + + R  KL    + ++    +   +       ++              +    +
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWDNLK 249

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLL--------SGEIPENLSISDSLNQ 356
            LT            +P  +  LP +++I +  N            +   +  + + +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 357 LKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE 415
           + + YNN+    +  S+  +  L +L    N+  G       +   ++ +N++ N I+  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEI 368

Query: 416 IPTSISGCISLTTVDFSRNSLSGEIPKA--ISQLRDLSILNLSRNQLTG-------PIPT 466
                     +  + F+ N L   IP       +  +S ++ S N++         P+  
Sbjct: 369 PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 467 DMQDMMSLTTLDLSYNNLNGEVPS 490
                +++++++LS N ++     
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKE 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (473), Expect = 1e-51
 Identities = 68/444 (15%), Positives = 145/444 (32%), Gaps = 50/444 (11%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L+   +  + F      +        E  ++          ++  +LK+L  +      
Sbjct: 207 KLRQFYMGNSPFVAENICEA------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 75  FSGEIPESYSEIQSLEYLGLNG--------IGLNGTAPVFLSLLKNLREMYIGYFNTYTG 126
              ++P     +  ++ + +          +  +  A     + + ++ +YIGY N  T 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
            +      + KL +L+     + G++P +      L +L L  N++T            +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 187 TQLDLSLNCLTGEVPESFSA--LKNLSLVQLFKNNLRG-------PFPSFVGDYPNLEVL 237
             L  + N L   +P  F A  +  +S +    N +         P         N+  +
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG-------KIPRDLCKGERLKSLILMQN 290
            +  N  +    E       L  +++  N +             +      L S+ L  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 291 LFSGPIPEELGACE--SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNL------LSG 342
             +  + ++  A     L       N  +   P    N   LK   + +           
Sbjct: 499 KLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 343 EIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVI 402
           E PE +++  SL QL++  N+I  K+   I    N++VL +++N         +      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 403 SLINVSSNNISGEIPTSISGCISL 426
            +  +  +         I GC +L
Sbjct: 614 GMYMLFYDKT-----QDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (425), Expect = 5e-45
 Identities = 48/348 (13%), Positives = 110/348 (31%), Gaps = 22/348 (6%)

Query: 154 ASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV 213
             +     L  ++  +N          +   +    +  L+    +   S ++   ++ +
Sbjct: 27  EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGL 86

Query: 214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG----ELPENLGRNRKLLLLDVSSNQIE 269
            L      G  P  +G    LEVL +  +          P+ +  N             +
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 270 GKIPRDLCKGE--RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNL 327
                   + +   L    +  +     I +        T+   + N +   +   +  L
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRL 205

Query: 328 PLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR 387
             L+   + ++    E       +++       Y            NL +L  + + N  
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 388 FNGELPEEMFNLKVISLINVSSNNI--------SGEIPTSISGCISLTTVDFSRNSL-SG 438
              +LP  +  L  + LINV+ N            +          +  +    N+L + 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 439 EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
            +  ++ +++ L +L    NQL G +P      + L +L+L+YN +  
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (250), Expect = 2e-22
 Identities = 25/208 (12%), Positives = 64/208 (30%), Gaps = 12/208 (5%)

Query: 290 NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG----EIP 345
           +++       L +   +T         +G +P  I  L  L+++ L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 346 ENLSISDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403
           + +S + S  Q +    +            + ++L    + ++     + +        +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463
            I   SNNI+  +  ++     L       +    E      +       N    Q    
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKT 240

Query: 464 IPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
                 ++  LT +++       ++P+ 
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP-- 463
           N   +    +   S++    +T +       SG +P AI QL +L +L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 464 --IPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
              P  +   MS         +        
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDY 152

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (593), Expect = 6e-69
 Identities = 99/518 (19%), Positives = 165/518 (31%), Gaps = 52/518 (10%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S K L++S N  +            EL+VLD               SL +L  L   GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                  ++S + SL+ L      L       +  LK L+E+ + +    +  +P  F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDA----LFLQMNKLTGHIHPELSGLISLTQLD 190
           L+ L  LD++S  I       L  L  +      L L +N +   I P     I L +L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 191 LSLNCLTGEVPE-SFSALKNLSLVQLFKNNLR---------------------------- 221
           L  N  +  V +     L  L + +L     R                            
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 222 -----GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL 276
                           N+    +          ++   N     L++ + +        L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN--GTIPAGIFNLPLLKMIE 334
                LK L    N              SL      +N L+  G      F    LK ++
Sbjct: 325 KS---LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 335 LDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELP 393
           L  N +   +  N    + L  L   ++N+      S+  +L NL  L + +        
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 394 EEMFNLKVISLINVSSNNISGEI-PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI 452
                L  + ++ ++ N+      P   +   +LT +D S+  L    P A + L  L +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
           LN+S N          + + SL  LD S N++      
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (560), Expect = 4e-64
 Identities = 97/489 (19%), Positives = 174/489 (35%), Gaps = 25/489 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  L ++GN  Q    G    G++ L+ L A   N        I  LK LK L+   N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 75  F-SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIG---YFNTYTGGIPP 130
             S ++PE +S + +LE+L L+   +       L +L  +  + +      N     I P
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194

Query: 131 EFGTLSKLRVLDMASCNISGEIP-------ASLSQLKLLDALFLQMNKLTGHIHPELSGL 183
                 +L  L + +   S  +        A L   +L+   F     L       L GL
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 184 ISLTQLDLSLNCL---TGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
            +LT  +  L  L     ++ + F+ L N+S   L    +              + L++ 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELV 312

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
              F       L   + L  L  +SN+                 L      F G   +  
Sbjct: 313 NCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKV 359
               SL       N +  T+ +    L  L+ ++  H+ L      +      +L  L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPT 418
           ++ +           L++L VL +  N F      ++F  L+ ++ +++S   +    PT
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM-SLTTL 477
           + +   SL  ++ S N+           L  L +L+ S N +      ++Q    SL  L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 478 DLSYNNLNG 486
           +L+ N+   
Sbjct: 549 NLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  197 bits (502), Expect = 7e-56
 Identities = 73/472 (15%), Positives = 137/472 (29%), Gaps = 52/472 (11%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGI 97
               + LD   N           S   L+ L             +Y  +  L  L L G 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG- 85

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS 157
                                   N         F  LS L+ L     N++      + 
Sbjct: 86  ------------------------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 158 QLKLLDALFLQMNKLTG-HIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ-- 214
            LK L  L +  N +    +    S L +L  LDLS N +          L  + L+   
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 215 --LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVSSNQIEGK 271
             L  N +    P    +   L  L +  N  +  + +   +    L +  +   +   +
Sbjct: 182 LDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 272 IPRDLCKGERLKSLILMQ---------NLFSGPIPEELGACESLTKFRAMKNQLNGTIPA 322
              +      L+ L  +          + +   I +      +++ F  +   +      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 323 GIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS 382
                   + +EL +          L     L      + +  G    S  +L +L  L 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLD 353

Query: 383 LQNNRFN--GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI 440
           L  N  +  G   +  F    +  +++S N +   + ++  G   L  +DF  ++L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 441 PK-AISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
                  LR+L  L++S              + SL  L ++ N+        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (381), Expect = 3e-39
 Identities = 80/482 (16%), Positives = 131/482 (27%), Gaps = 99/482 (20%)

Query: 14  MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
           + L  L +  N          + G+  LEV       F     +E      L+ L     
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC---- 255

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
                                            L++ +      + Y + Y   I   F 
Sbjct: 256 --------------------------------NLTIEEF----RLAYLDYYLDDIIDLFN 279

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            L+ +    + S  I        S       L L   K       +L  L  LT      
Sbjct: 280 CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
                    S   L +L  + L +N L                      +F G   ++  
Sbjct: 338 GNAF-----SEVDLPSLEFLDLSRNGL----------------------SFKGCCSQSDF 370

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
               L  LD+S N +                           +       E L       
Sbjct: 371 GTTSLKYLDLSFNGVIT-------------------------MSSNFLGLEQLEHLDFQH 405

Query: 314 NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI 372
           + L       +F +L  L  +++ H           +   SL  LK+A N+      P I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 373 -GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
              L NL  L L   +     P    +L  + ++N+S NN             SL  +D+
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 432 SRNSLSGEIPKAISQL-RDLSILNLSRNQLTGPIPTD--MQDMMSLTTLDLSYNNLNGEV 488
           S N +     + +      L+ LNL++N           +Q +     L +    +    
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

Query: 489 PS 490
           PS
Sbjct: 586 PS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 4e-28
 Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 11/257 (4%)

Query: 15  SLKVLNISGNG--FQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGG 72
           SL+ L++S NG  F+         G T L+ LD   N     +    + L+ L+HL F  
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 73  NYFSGEIPESY-SEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE 131
           +        S    +++L YL ++            + L +L  + +   N++     P+
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPD 464

Query: 132 -FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
            F  L  L  LD++ C +    P + + L  L  L +  N            L SL  LD
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 191 LSLNCLTGEVPESFSAL-KNLSLVQLFKNNLRG--PFPSFVGDYPNLEVLQVWGNNFTGE 247
            SLN +     +       +L+ + L +N+        SF+    +   L V        
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 248 LPENLGRNRKLLLLDVS 264
            P +  +   +L L+++
Sbjct: 585 TPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (270), Expect = 7e-25
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query: 343 EIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVI 402
           +IP+NL  S     L +++N +      S  +   L VL L              +L  +
Sbjct: 21  KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 403 SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462
           S + ++ N I      + SG  SL  +     +L+      I  L+ L  LN++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 463 -PIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
             +P    ++ +L  LDLS N +     +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 3e-62
 Identities = 93/488 (19%), Positives = 163/488 (33%), Gaps = 15/488 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S + L  S N             +  L  LD               S   L  L    N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                  + S  ++L++L     G++    + L   K L  +Y+G  N  +    P+   
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFP 151

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT-GHIHPELSGLISLTQLDLSL 193
             KL+VLD  +  I       +S L+    L L +N      I P          L+   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 194 NCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFPSFVGDYP--NLEVLQVWGNNFTGELP 249
                 + +    S +++L L      +     P+        ++E + +  + F     
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
                   L  LD+++  +  ++P  L     LK L+L  N F            SLT  
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 310 RAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAG 366
               N     +  G   NL  L+ ++L H+ +      NL + +   L  L ++YN    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCIS 425
               +      L +L L   R   +  +  F NL ++ ++N+S + +         G  +
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 426 LTTVDFSRNSLSGEI---PKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482
           L  ++   N           ++  L  L IL LS   L+         +  +  +DLS+N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 483 NLNGEVPS 490
            L      
Sbjct: 511 RLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (538), Expect = 4e-61
 Identities = 80/484 (16%), Positives = 166/484 (34%), Gaps = 16/484 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  L ++ N          + G   L+ L       +    + + + K L+ L  G N+
Sbjct: 82  RLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            S          + L+ L      ++  +   +S L+    + +        GI P    
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 135 LSKLRVLDMASCNISGEIP-----ASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
            +  + L+         I      +++  L L     +    ++  +   L  + S+  +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESI 259

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           +L  +        +F     L  + L   +L    PS +     L+ L +  N F     
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN--LFSGPIPEELGACESL 306
            +      L  L +  N    ++     +  E L+ L L  +    S     +L     L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKVAYNNIA 365
                  N+            P L++++L    L  +  ++       L  L ++++ + 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNG--ELPEEMF-NLKVISLINVSSNNISGEIPTSISG 422
                    L  L  L+LQ N F             L  + ++ +S  ++S     + + 
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 423 CISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN 482
              +  VD S N L+    +A+S L+ +  LNL+ N ++  +P+ +  +    T++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 483 NLNG 486
            L+ 
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (515), Expect = 9e-58
 Identities = 82/454 (18%), Positives = 147/454 (32%), Gaps = 14/454 (3%)

Query: 42  EVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNG 101
           +  +  N      +P  +    + + L F  N        ++S + +L +L L    +  
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 102 TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKL 161
                      L  + +   N               L+ L      IS      L   K 
Sbjct: 72  IHEDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL-FKNNL 220
           L++L+L  N ++    P+      L  LD   N +     E  S+L+  + + L    N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 221 RGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN--RKLLLLDVSSNQIEGKIPRDL-- 276
                    D    + L   G      + + L  +  + L L        E   P     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD 336
                ++S+ L ++ F             L +       L+  +P+G+  L  LK + L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFN--GELP 393
            N        + S   SL  L +  N    ++    + NL NL  L L ++         
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 394 EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPK-AISQLRDLSI 452
            ++ NL  +  +N+S N        +   C  L  +D +   L  +  +     L  L +
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
           LNLS + L          + +L  L+L  N+   
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (299), Expect = 1e-28
 Identities = 66/337 (19%), Positives = 120/337 (35%), Gaps = 13/337 (3%)

Query: 12  PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
            +MS++ +N+  + F +          + L+ LD    + +  LP  +V L  LK L   
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLS 309

Query: 72  GNYFSGEIPESYSEIQSLEYLGLNGIGLNGT-APVFLSLLKNLREMYIGY-FNTYTGGIP 129
            N F      S S   SL +L + G           L  L+NLRE+ + +     +    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQ 188
            +   LS L+ L+++          +  +   L+ L L   +L           L  L  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPF---PSFVGDYPNLEVLQVWGNNFT 245
           L+LS + L     + F  L  L  + L  N+         + +     LE+L +   + +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 246 GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACES 305
                     + +  +D+S N++       L   + +  L L  N  S  +P  L     
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ 548

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG 342
                  +N L+ T      N+  L+  + +   L  
Sbjct: 549 QRTINLRQNPLDCTCS----NIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 5e-22
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 4/195 (2%)

Query: 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL 378
            IP  +      + +E   N+L        S   +L  L +    I      +  +   L
Sbjct: 26  EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG 438
           + L L  N         +   K +  +      IS      +    +L ++    N +S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 439 EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLT--TLDLSYNNLNGEVPSGGHFPA 496
                      L +L+   N +      DM  +   T  +L+L+ N++ G  P       
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 497 FDEASFAGNPNLCLP 511
           F   +F G  NL + 
Sbjct: 204 FQSLNFGGTQNLLVI 218

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (535), Expect = 4e-59
 Identities = 71/516 (13%), Positives = 155/516 (30%), Gaps = 52/516 (10%)

Query: 7   SSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG---PLPVEIVSLK 63
                 +++  +     +  + ++    +     L + D   +         P++  S  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 64  NLKHLSFGGNY-FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN 122
           +LK    G        I ++   +  L+ +                   N        + 
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD------YA 477

Query: 123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG-------- 174
                    +  L  L  +++ +C    ++P  L  L  L +L +  N+           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 175 -HIHPELSGLISLTQLDLSLNCLTGEVPE-SFSALKNLSLVQLFKNNLRGPFPSFVGDYP 232
             +  +      +    +  N L       S   +  L L+    N +R    +F G   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAF-GTNV 595

Query: 233 NLEVLQVWGNNFTGELPENLGRN-RKLLLLDVSSNQIEGKIPRD--LCKGERLKSLILMQ 289
            L  L++  N    E+PE+      ++  L  S N+++  IP          + S+    
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSY 653

Query: 290 NLFSGPIPE-----ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLS--- 341
           N             +     + +      N++             +  I L +NL++   
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 342 ----GEIPENLSISDSLNQLKVAYNNIAGKIPPSI--GNLTNLNVLSLQNNRFNGELPEE 395
                    N   +  L  + + +N +   +        L  L+ + +  N F+   P +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQ 771

Query: 396 MFNLKVISLIN------VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRD 449
             N   +             N I  + PT I+ C SL  +    N +  ++ + +     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQ 828

Query: 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
           L IL+++ N       T +   +      L Y+   
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (535), Expect = 4e-59
 Identities = 82/510 (16%), Positives = 165/510 (32%), Gaps = 51/510 (10%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            +  L+++G G +   P  I   +TEL+VL    ++ T    +               + 
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 75  FSGEIPESY----SEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP 130
                 + +      +   + L           P+      +L++  IG        I  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
               L+KL+++  A+   + +  A   +            K   +     S L  LT ++
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVE 497

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGP---------FPSFVGDYPNLEVLQVWG 241
           L       ++P+    L  L  + +  N                      P +++  +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 242 NNFTGELPEN--LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
           NN   E P +  L +  KL LLD   N++  +         +L  L L  N     IPE+
Sbjct: 558 NNLE-EFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPED 613

Query: 300 LGA-CESLTKFRAMKNQLNGTIPAGIF--NLPLLKMIELDHNLLSGEIPENLSISD---- 352
             A  + +       N+L   IP      ++ ++  ++  +N +  E        D    
Sbjct: 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 353 -SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF-------NGELPEEMFNLKVISL 404
            + + + ++YN I           + ++ + L NN                  N  +++ 
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 405 INVSSNNISGEIPTSISGC--ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR----- 457
           I++  N ++  +           L+ +D S N  S   P        L    +       
Sbjct: 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 458 -NQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
            N++    PT +    SL  L +  N++  
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  202 bits (516), Expect = 1e-56
 Identities = 91/499 (18%), Positives = 163/499 (32%), Gaps = 50/499 (10%)

Query: 31  PGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLE 90
           PG  +     +  L        G +P  I  L  LK LSFG +  +        E  + +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 91  YLGL-NGIGLNGTAPVFLSLLKNLR--EMYIGYFNTYTGGIPPEFGTLSKLRVLDM-ASC 146
                          +FL   + L   ++     N      P +  +   L+   +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSA 206
           N    I  ++ +L  L  ++   +  T       +  +     +            S+S 
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 207 LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG---------ELPENLGRNRK 257
           LK+L+ V+L+        P F+ D P L+ L +  N              L ++     K
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 258 LLLLDVSSNQIEG-KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQL 316
           + +  +  N +E       L K  +L  L  + N       E  G    LT  +   NQ+
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQI 607

Query: 317 NGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAGKIPPSIG 373
              IP         ++ +   HN L   IP   +      +  +  +YN I      +I 
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNIS 664

Query: 374 ------NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS-------GEIPTSI 420
                    N + ++L  N       E       IS I +S+N ++            + 
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 421 SGCISLTTVDFSRNSLSGEIPKAI--SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLD 478
                LTT+D   N L+  +      + L  LS +++S N  +   PT   +   L    
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782

Query: 479 LSY------NNLNGEVPSG 491
           + +      N +  + P+G
Sbjct: 783 IRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (438), Expect = 3e-46
 Identities = 73/477 (15%), Positives = 151/477 (31%), Gaps = 45/477 (9%)

Query: 42  EVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNG 101
           E LD  N  +        +   N    +   + +  +          +  L L G G  G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 102 TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI-PASLSQLK 160
             P  +  L  L+ +  G  ++ T              + +     I        L   +
Sbjct: 338 RVPDAIGQLTELKVLSFGT-HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG------EVPESFSALKNLSLVQ 214
            L+   L  + +    +PE+  +   +++ L    +         + ++   L  L ++ 
Sbjct: 397 RLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPR 274
              +       +      + E               +    + L  +++ +     ++P 
Sbjct: 455 FANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 275 DLCKGERLKSLILMQNLFSGP---------IPEELGACESLTKFRAMKNQLNG-TIPAGI 324
            L     L+SL +  N              + ++      +  F    N L      A +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569

Query: 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG-NLTNLNVLSL 383
             +  L +++  HN +   +      +  L  LK+ YN I   IP         +  L  
Sbjct: 570 QKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF 626

Query: 384 QNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPT-----SISGCISLTTVDFSRNSL 436
            +N+    +P      ++ V+  ++ S N I  E             I+ +TV  S N +
Sbjct: 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 437 SGEIPKAISQLRDLSILNLSRNQLT-------GPIPTDMQDMMSLTTLDLSYNNLNG 486
                +  +    +S + LS N +T        P   + ++   LTT+DL +N L  
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 3e-26
 Identities = 51/407 (12%), Positives = 122/407 (29%), Gaps = 53/407 (13%)

Query: 120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE 179
            +   +           K   + +A+C+ +  +PA   Q+          ++        
Sbjct: 179 TYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTY----SQSGIKRSEL 234

Query: 180 LSGLISLTQLDLSLNCLTGE------VPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPN 233
            +  +      +  N LT +      + E+   +K+   ++     L G    +     N
Sbjct: 235 ETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTIN 294

Query: 234 LEVLQVWGN------NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287
             +  +  N       +  +   +L  N ++  L ++    +G++P  + +   LK L  
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354

Query: 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLS----- 341
             +  +           +       K+++              L + +L  + ++     
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 342 GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV 401
             I ++  IS    Q+    N I   I  +I  LT L ++   N+ F             
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPF------------- 460

Query: 402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
                           T  +  +     +            + S L+DL+ + L      
Sbjct: 461 ----------------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 462 GPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
             +P  + D+  L +L+++ N           +    +      P +
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD-DEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 10/218 (4%)

Query: 282 LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI----ELDH 337
           LK + +     S        A +               +PAG + +              
Sbjct: 173 LKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTYSQSGIKRS 232

Query: 338 NLLSGEIP-ENLSISD----SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL 392
            L +  +  E+ ++ D        + +     A  I            L  +N R+    
Sbjct: 233 ELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGT 292

Query: 393 PEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI 452
                +    +  N   +    +    +     +T +  +     G +P AI QL +L +
Sbjct: 293 INNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKV 351

Query: 453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
           L+   +  T        + ++    +   + +      
Sbjct: 352 LSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (492), Expect = 1e-54
 Identities = 94/487 (19%), Positives = 164/487 (33%), Gaps = 25/487 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  L ++GN  Q + PG    G+T LE L A            I  L  LK L+   N+
Sbjct: 81  HLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 75  FSG-EIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLRE--MYIGYFNTYTGGIPPE 131
               ++P  +S + +L ++ L+   +       L  L+   +  + +         I  +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

Query: 132 FGTLSKLRVLDMASCNISGEIP-------ASLSQLKLLDALFLQMNKLTGHIHPELSGLI 184
                KL  L +     S  I        A L   +L+   F     L       + GL 
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 185 SLT--QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGN 242
            +T  +  L+      +    F  L N+S + L   +++         +   + L +   
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRC 317

Query: 243 NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFS--GPIPEEL 300
                   +L     L  L ++ N+    I         L  L L +N  S  G      
Sbjct: 318 QLKQFPTLDL---PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKV 359
               SL       N     + A    L  L+ ++  H+ L      +     + L  L +
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPT 418
           +Y N           LT+LN L +  N F       +F N   ++ +++S   +      
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLD 478
                  L  ++ S N+L        +QL  LS L+ S N++            SL   +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 479 LSYNNLN 485
           L+ N++ 
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 4e-52
 Identities = 89/531 (16%), Positives = 178/531 (33%), Gaps = 53/531 (9%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S K +++S N  +           +EL+ LD                L +L +L   GN 
Sbjct: 33  STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                P S+S + SLE L      L       +  L  L+++ + +   ++  +P  F  
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 135 LSKLRVLDMASCNISGEIPASLSQLK----LLDALFLQMNKLTGHIHPELSGLISLTQLD 190
           L+ L  +D++   I       L  L+    +  +L + +N +   I  +    I L +L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 191 LSLNCLTGEVPE-SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQV--------WG 241
           L  N  +  + +     L  L + +L     +      + +   +E L            
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFS-------- 293
            N   +          +  + ++   I+     D+ K  + +SL +++            
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 294 -----------GPIPEELGACESLTKFRAMKNQLNGTIPAGIF---NLPLLKMIELDHNL 339
                      G I  +  A  SL+     +N L+       +       L+ ++L  N 
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 340 LSGEIPENLSISDSLNQLKVAYNNIAGKIPPS-IGNLTNLNVLSLQNNRFNGELPEEMFN 398
               +  N    + L  L   ++ +      S   +L  L  L +       +       
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 399 LKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
           L  ++ + ++ N+      +++ +   +LT +D S+  L          L  L +LN+S 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
           N L     +    + SL+TLD S+N +                      +L
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET----------SKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  138 bits (350), Expect = 4e-35
 Identities = 77/365 (21%), Positives = 126/365 (34%), Gaps = 24/365 (6%)

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
           S  + +D++   +      S S    L  L L   ++         GL  L+ L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPENLGR 254
           +    P SFS L +L  +   +  L       +G    L+ L V  N     +LP     
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 255 NRKLLLLDVSSNQIEGKIPRDLC----KGERLKSLILMQNLFSGPIPEELGACESLTKFR 310
              L+ +D+S N I+     DL       +   SL +  N     I ++      L +  
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELT 210

Query: 311 AMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISD--------SLNQLKVAY 361
              N  +  I      NL  L +  L       E    +            ++++ ++ Y
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 362 NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS 421
            N           L N++ +SL        L +   + K  SL ++    +       + 
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSL-SIIRCQLKQFPTLDLP 328

Query: 422 GCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT--GPIPTDMQDMMSLTTLDL 479
               L ++  + N  S  I      L  LS L+LSRN L+  G          SL  LDL
Sbjct: 329 ---FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 480 SYNNL 484
           S+N  
Sbjct: 384 SFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  124 bits (313), Expect = 3e-30
 Identities = 75/418 (17%), Positives = 125/418 (29%), Gaps = 44/418 (10%)

Query: 7   SSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG-PLPVEIVSLKNL 65
             L +       L++S N    +   Q   G+  L  L    N  +   +   + +L  L
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 66  KHLSFGGNYFSGEIPESYSEIQSLEYLG--------LNGIGLNGTAPVFLSLLKNLREMY 117
                    F  E      E   +E L         L          V    L N+  M 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 118 IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIH 177
           +   +        +     K + L +  C +       L  LK L    L MNK +  I 
Sbjct: 292 LAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKGS--IS 343

Query: 178 PELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVL 237
            +   L SL+ LDLS N L+     S+S L                         +L  L
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGT----------------------NSLRHL 381

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPI 296
            +  N     +  N     +L  LD   + ++           E+L  L +         
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLN 355
                   SL   +   N       + +F N   L  ++L    L             L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS 413
            L +++NN+          L +L+ L    NR            K ++  N+++N+++
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 3/127 (2%)

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427
           +P  I   ++   + L  N           N   +  +++S   I      +  G   L+
Sbjct: 26  VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
            +  + N +    P + S L  L  L     +L       +  +++L  L++++N ++  
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS- 142

Query: 488 VPSGGHF 494
                +F
Sbjct: 143 CKLPAYF 149

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (382), Expect = 1e-39
 Identities = 91/519 (17%), Positives = 190/519 (36%), Gaps = 62/519 (11%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +  V +     F    P  +      ++ LD   N  T     ++ +  NL+ L    + 
Sbjct: 6   ASGVCDGRSRSFTS-IPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFG 133
            +    +++  + SLE+L L+   L+  +  +   L +L+ + +   N Y   G+   F 
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFP 120

Query: 134 TLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDL 191
            L+ L+ L + +     EI     + L  L+ L ++   L  +   + L  +  +  L L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTL 179

Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG----- 246
            L+     +      L ++  ++L   NL     S +        ++      +      
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 247 -----ELPENLGRNRKLLLLDVSSNQI------EGKIPRDLCKGE--RLKSLILMQNLFS 293
                +L   +    ++   D + N +      E  +  +L K E   ++ L + Q    
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISD 352
             +       E + +     +++   +P     +L  L+ ++L  NL+  E  +N +   
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 353 SLNQLKV---AYNNIA--GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINV 407
           +   L+    + N++    K    +  L NL  L +  N F+  +P+     + +  +N+
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 408 SSNNISGEIPTSISGCI--SLTTVDFSRNSLSGEIPKAISQLRDLSI------------- 452
           SS  I       +  CI  +L  +D S N+L       + +L++L I             
Sbjct: 418 SSTGI-----RVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDASL 471

Query: 453 ------LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
                 + +SRNQL          + SL  + L  N  +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 14/266 (5%)

Query: 5   NWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKN 64
             S +     +L  L        D       V    +  L          L      L+ 
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 65  LKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG---IGLNGTAPVFLSLLKNLREMYIGYF 121
           +K ++   +            ++SLE+L L+    +              +L+ + +   
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 122 N-TYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
           +            TL  L  LD++       +P S    + +  L L    +   +   +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
               +L  LD+S N L          L+ L    + +N L+   P      P L V+++ 
Sbjct: 430 --PQTLEVLDVSNNNLD-SFSLFLPRLQELY---ISRNKLKT-LPDASLF-PVLLVMKIS 481

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSN 266
            N           R   L  + + +N
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 14/144 (9%)

Query: 367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCIS 425
            IP  +     +  L L  N+    +          + ++ + S+ I+     +     S
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG-PIPTDMQDMMSLTTLDLSYNNL 484
           L  +D S N LS         L  L  LNL  N      + +   ++ +L TL +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 485 NGEVPSGGHFPAFDEASFAGNPNL 508
             E+             FAG  +L
Sbjct: 136 FSEIRRI---------DFAGLTSL 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (377), Expect = 2e-39
 Identities = 104/475 (21%), Positives = 170/475 (35%), Gaps = 38/475 (8%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
                 +      D         + ++  L A          VE   L NL  ++F  N 
Sbjct: 25  EKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQ 79

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +   P     +  L  + +N   +    P  L+ L NL  + + + N  T         
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITD--IDPLKN 132

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L+ L  L+++S  IS    ++LS L  L  L              L+ L +L +LD+S N
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSN 187

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            ++       + L NL  +    N +    P  +G   NL+ L + GN         L  
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
              L  LD+++NQI    P  L    +L  L L  N  S   P  L    +LT     +N
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
           QL    P  I NL  L  + L  N +S   P  +S    L +L    N +      S+ N
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 351

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           LTN+N LS  +N+ +      + NL  I+ + ++    +   P +    +S+     +  
Sbjct: 352 LTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVT 408

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
                 P  IS     +  +++ N  +              T+       +G V 
Sbjct: 409 GAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 2e-38
 Identities = 90/431 (20%), Positives = 165/431 (38%), Gaps = 60/431 (13%)

Query: 61  SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120
           +L        G    +  + ++  ++  +  L  + +G+   +   +  L NL ++    
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF-S 76

Query: 121 FNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
            N  T         L+KL  + M +  I+   P  L+ L  L  L L  N++T      L
Sbjct: 77  NNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPL 130

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
             L +L +L+LS N ++     + S L +L  +    N +    P  + +   LE L + 
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDIS 185

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
            N  +      L +   L  L  ++NQI    P                          L
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP--------------------------L 217

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKV 359
           G   +L +     NQL       + +L  L  ++L +N +S   P   L+    L +LK+
Sbjct: 218 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKL 272

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS 419
             N I+      +  LT L  L L  N+        + NLK ++ + +  NNIS   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 326

Query: 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479
           +S    L  + F  N +S     +++ L +++ L+   NQ++   P  + ++  +T L L
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 480 SYNNLNGEVPS 490
           +         +
Sbjct: 383 NDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 3e-33
 Identities = 85/409 (20%), Positives = 141/409 (34%), Gaps = 34/409 (8%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  + ++ N   D  P   +  +T L  L  FNN  T   P  + +L NL  L    N 
Sbjct: 91  KLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 145

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            S     + S + SL+ L         T    L+ L  L  + I   N  +         
Sbjct: 146 ISD--ISALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISS-NKVSD--ISVLAK 197

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L+ L  L   +  IS   P  L  L  LD L L  N+L       L+ L +LT LDL+ N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 253

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            ++       S L  L+ ++L  N +    P  +     L  L++  N         +  
Sbjct: 254 QISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISN 307

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
            + L  L +  N I    P  +    +L+ L    N  S      L    ++    A  N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS-IG 373
           Q++   P  + NL  +  + L+    +       +   +++      N     I P+ I 
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA---NVSIPNTVKNVTGALIAPATIS 418

Query: 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG 422
           +  +     +  N  +    E  +       I   +   SG +   +  
Sbjct: 419 DGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 7e-12
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 353 SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNI 412
            L    +  +    +I      L       L        + +   +L  ++ +      I
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58

Query: 413 SGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM 472
                  +    +LT ++FS N L+   P  +  L  L  + ++ NQ+    P  + ++ 
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 473 SLTTLDLSYNNLNG 486
           +LT L L  N +  
Sbjct: 113 NLTGLTLFNNQITD 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (362), Expect = 3e-38
 Identities = 69/351 (19%), Positives = 139/351 (39%), Gaps = 27/351 (7%)

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L++     +   +++  +     +L+ +  L +   K+   I   +  L +L  L+L+ N
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI-QGIEYLTNLEYLNLNGN 76

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            +T       S L  L+ + +  N +     S + +  NL  L +  +N +      L  
Sbjct: 77  QITD--ISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD--ISPLAN 130

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             K+  L++ +N     +   L     L  L + ++      P  +     L       N
Sbjct: 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIG 373
           Q+    P  + +L  L       N ++   P  N++    LN LK+  N I       + 
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPVANMT---RLNSLKIGNNKITD--LSPLA 240

Query: 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433
           NL+ L  L +  N+ +      + +L  + ++NV SN IS    + ++    L ++  + 
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           N L  E  + I  L +L+ L LS+N +T   P  +  +  + + D +   +
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 5e-37
 Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 28/356 (7%)

Query: 107 LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
            + L       +    + T         L  +  L +A   ++  I   +  L  L+ L 
Sbjct: 18  DADLAEGIRAVLQK-ASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLN 72

Query: 167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS 226
           L  N++T      LS L+ LT L +  N +T     +   L NL  + L ++N+     S
Sbjct: 73  LNGNQITDI--SPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDI--S 126

Query: 227 FVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI 286
            + +   +  L +  N+        L     L  L V+ ++++   P  +     L SL 
Sbjct: 127 PLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 287 LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP- 345
           L  N      P  L +  SL  F A  NQ+    P  + N+  L  +++ +N ++   P 
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL 239

Query: 346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI 405
            NLS    L  L++  N I+     ++ +LT L +L++ +N+ +      + NL  ++ +
Sbjct: 240 ANLS---QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL 292

Query: 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
            +++N +  E    I G  +LTT+  S+N ++   P  ++ L  +   + +   + 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 3e-30
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 30/333 (9%)

Query: 159 LKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKN 218
              L  L   +N++        + L    +  L    +T     +   L++++ + +   
Sbjct: 2   AATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE 54

Query: 219 NLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCK 278
            +       +    NLE L + GN  T      L    KL  L + +N+I       L  
Sbjct: 55  KVASI--QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 279 GERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN 338
              L+ L L ++  S   P  L     +       N    +  + + N+  L  + +  +
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTES 165

Query: 339 LLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF 397
            +    P  NL+    L  L + YN I       + +LT+L+  +   N+        + 
Sbjct: 166 KVKDVTPIANLT---DLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVA 218

Query: 398 NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
           N+  ++ + + +N I+   P  ++    LT ++   N +S     A+  L  L +LN+  
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
           NQ++      + ++  L +L L+ N L  E   
Sbjct: 275 NQISDISV--LNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (299), Expect = 1e-29
 Identities = 64/327 (19%), Positives = 123/327 (37%), Gaps = 25/327 (7%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S+  L ++G           +  +T LE L+   N  T   P  + +L  L +L  G N 
Sbjct: 45  SITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +     +   + +L  L LN   ++  +P  L+ L  +  + +   N            
Sbjct: 100 IT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL-GANHNLS-DLSPLSN 153

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           ++ L  L +    +    P  ++ L  L +L L  N++       L+ L SL      +N
Sbjct: 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVN 209

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            +T       + +  L+ +++  N +     S + +   L  L++  N  +      +  
Sbjct: 210 QITD--ITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKD 263

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             KL +L+V SNQI       L    +L SL L  N       E +G   +LT     +N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLS 341
            +    P  + +L  +   +  + ++ 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 23/170 (13%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 338 NLLSGEIPENLSISD--SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEE 395
             L   I +    +D     +  +   ++      +   L ++  L +   +      + 
Sbjct: 6   ATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQG 61

Query: 396 MFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL 455
           +  L  +  +N++ N I+   P  +S  + LT +    N ++     A+  L +L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117

Query: 456 SRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGN 505
           + + ++   P  + ++  + +L+L  N+   ++    +    +  +   +
Sbjct: 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (371), Expect = 5e-38
 Identities = 83/487 (17%), Positives = 151/487 (31%), Gaps = 61/487 (12%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S K L++S N  +            EL+VLD               SL +L  L   GN 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                  ++S + SL+ L      L       +  LK L+E+ + +    +  +P  F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALF----LQMNKLTGHIHPELSGLISLTQLD 190
           L+ L  LD++S  I       L  L  +  L     L +N +   I P     I L +L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 191 LSLNCLTGEVPE-SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
           L  N  +  V +     L  L + +L     R                     N      
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------------------EGNLEKFDK 248

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
             L     L + +     +                     + +   I +      +++ F
Sbjct: 249 SALEGLCNLTIEEFRLAYL---------------------DYYLDDIIDLFNCLTNVSSF 287

Query: 310 RAMKNQLNGTIPAGIF--NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367
             +   +   +    +      L+++            ++L       +L    N     
Sbjct: 288 SLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTFTSNKG--G 338

Query: 368 IPPSIGNLTNLNVLSLQNNRFN--GELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS 425
              S  +L +L  L L  N  +  G   +  F    +  +++S N +   + ++  G   
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 426 LTTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           L  +DF  ++L           LR+L  L++S              + SL  L ++ N+ 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 485 NGEVPSG 491
                  
Sbjct: 458 QENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 5e-34
 Identities = 78/383 (20%), Positives = 135/383 (35%), Gaps = 27/383 (7%)

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
              F +  +L+VLD++ C I      +   L  L  L L  N +        SGL SL +
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR-GPFPSFVGDYPNLEVLQVWGNNFTGE 247
           L      L          LK L  + +  N ++    P +  +  NLE L +  N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 248 LPENLGRNRKL----LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGAC 303
              +L    ++    L LD+S N +   I     K  RL  L L  N  S  + +     
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK--TCI 221

Query: 304 ESLTKFRAMKNQLNG--------TIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSL 354
           + L      +  L                   L  L + E     L   + + + + + L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 355 NQLKVAY-NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS 413
             +      ++  +             L L N +F      ++ +LK ++     ++N  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF----TSNKG 337

Query: 414 GEIPTSISGCISLTTVDFSRNSLS--GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDM 471
           G   + +    SL  +D SRN LS  G   ++      L  L+LS N +   + ++   +
Sbjct: 338 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 472 MSLTTLDLSYNNLNGEVPSGGHF 494
             L  LD  ++NL  ++     F
Sbjct: 396 EQLEHLDFQHSNLK-QMSEFSVF 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (288), Expect = 3e-27
 Identities = 78/368 (21%), Positives = 125/368 (33%), Gaps = 29/368 (7%)

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLN 194
              + LD++   +      S      L  L L   ++   I       L  L+ L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT-GELPENLG 253
            +      +FS L +L  +   + NL       +G    L+ L V  N     +LPE   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI---PEELGACESLTKFR 310
               L  LD+SSN+I+     DL    ++  L L  +L   P+            L K  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 311 AMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGE---IPENLSISDSLNQLKVAYNNIAG 366
              N  +  +       L  L++  L       E      + S  + L  L +    +A 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 367 ------KIPPSIGNLTNLNVLSLQNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPT 418
                  I      LTN++  SL +      + +  +    + + L+N            
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT--GPIPTDMQDMMSLTT 476
                 SL  + F+ N        +   L  L  L+LSRN L+  G          SL  
Sbjct: 326 ------SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 477 LDLSYNNL 484
           LDLS+N +
Sbjct: 378 LDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.9 bits (231), Expect = 4e-20
 Identities = 73/361 (20%), Positives = 119/361 (32%), Gaps = 30/361 (8%)

Query: 13  KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLD------AFNNNFTGPLPVEIVSLKNLK 66
           ++ L  L +  N          + G+  LEV            N        +  L NL 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 67  HLSFGGNY---FSGEIPESYSEIQSLEYLGLNGIGLNGTAP-VFLSLLKNLREMYIGYFN 122
              F   Y   +  +I + ++ + ++    L  + +       +    ++L  +   +  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 123 TYTGGIPPEFGTLSKLRVLDMASCNISGEIPA--SLSQLKLLDALFLQMNKLT--GHIHP 178
                       L  L+ L   + N  G   +   L  L+ LD   L  N L+  G    
Sbjct: 319 -------FPTLKLKSLKRLTF-TSNKGGNAFSEVDLPSLEFLD---LSRNGLSFKGCCSQ 367

Query: 179 ELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVL 237
              G  SL  LDLS N +   +  +F  L+ L  +    +NL+     S      NL  L
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRD-LCKGERLKSLILMQNLFSGPI 296
            +   +              L +L ++ N  +     D   +   L  L L Q       
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLN 355
           P    +  SL       NQL  ++P GIF  L  L+ I L  N      P    +S  LN
Sbjct: 487 PTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

Query: 356 Q 356
           +
Sbjct: 546 K 546

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 320 IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN 379
           IP  +      K ++L  N L      +      L  L ++   I      +  +L++L+
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 380 VLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL-S 437
            L L  N     L    F  L  +  +     N++      I    +L  ++ + N + S
Sbjct: 80  TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 438 GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLT----TLDLSYNNLN 485
            ++P+  S L +L  L+LS N++     TD++ +  +     +LDLS N +N
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 51/269 (18%), Positives = 95/269 (35%), Gaps = 43/269 (15%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
            + + L +  N        +     +L +LD+S  +I+  I     +    L +LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLS 349
                                       ++  G F  L  L+ +      L+      + 
Sbjct: 87  PIQ-------------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 350 ISDSLNQLKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF----NLKVISL 404
              +L +L VA+N I   K+P    NLTNL  L L +N+    +          + +++L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 405 -INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPK-AISQLRDLSILNL------S 456
            +++S N ++  I       I L  +    N  S  + K  I  L  L +  L      +
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
              L     + ++ + +LT  +     L+
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISL 426
           IP ++    +   L L  N     L    F +   + ++++S   I      +      L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
           +T+  + N +      A S L  L  L      L       +  + +L  L++++N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 487 EVPSGGHF 494
                 +F
Sbjct: 138 SFKLPEYF 145

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (375), Expect = 6e-38
 Identities = 92/506 (18%), Positives = 176/506 (34%), Gaps = 48/506 (9%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
           + + L +S N  +          + +L++L+  +      +  E   +L NL+ L  G +
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 74  YFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE 131
                 P+++  +  L  L L   G+        +   LK L  + +      +  + P 
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKL--LDALFLQMNKLTGHIHPELSGL------ 183
           FG L+ L+ +D +S  I       L  L+   L    L  N L   +  +          
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 184 ISLTQLDLSLNCLTGEVPESFS------------ALKNLSLVQLFKNNLRGPFPS-FVG- 229
           + L  LD+S N  T ++  +FS               ++       +N++ P  + F G 
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 230 DYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILM 288
              ++  L +                + L +L+++ N+I  KI  +   G + L+ L L 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLS 322

Query: 289 QNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN 347
            NL              +      KN +   I    F  L  L+ ++L  N L+      
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----T 376

Query: 348 LSISDSLNQLKVAYNNIAGKIPPSIGNLT-NLNVLSLQNNRFNGELPEEMF-NLKVISLI 405
           +    S+  + ++ N +      ++  +    N++ L  NR            +  + ++
Sbjct: 377 IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 406 NVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEI-----PKAISQLRDLSILNLSRNQ 459
            ++ N  S      + S   SL  +    N L               L  L +L L+ N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 460 LTGPIPTDMQDMMSLTTLDLSYNNLN 485
           L    P     + +L  L L+ N L 
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (364), Expect = 1e-36
 Identities = 87/506 (17%), Positives = 164/506 (32%), Gaps = 40/506 (7%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
             ++                   +   E L    N            L+ L+ L  G  Y
Sbjct: 5   DGRIAFYRFCNLTQVPQV-----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 75  FSGEI-PESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-F 132
               I  E++  + +L  L L    +    P     L +L E+ + +       +    F
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 133 GTLSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLTGHIHPELSGL--ISLTQL 189
             L  L  LD++   I    +  S  +L  L ++    N++      EL  L   +L+  
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 190 DLSLNCLTGEVPESFSALKN-LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
            L+ N L   V   +    N    + L   ++ G   +       +++   + N  +   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-------VDITGNFSNAISKSQ 232

Query: 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKG---ERLKSLILMQNLFSGPIPEELGACES 305
             +L     ++      + I+    ++   G     ++ L L                + 
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 306 LTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI 364
           L       N++N  I    F  L  L+++ L +NLL      N      +  + +  N+I
Sbjct: 292 LKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI 424
           A     +   L  L  L L++N         +  +  I  I +S N +     T     +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV----TLPKINL 401

Query: 425 SLTTVDFSRNSLSG-EIPKAISQLRDLSILNLSRNQLTG-PIPTDMQDMMSLTTLDLSYN 482
           +   +  S N L   +I   + ++  L IL L++N+ +         +  SL  L L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 483 NLNGEVPSGGHFPAFDEASFAGNPNL 508
            L     +           F G  +L
Sbjct: 462 MLQLAWETE-----LCWDVFEGLSHL 482

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (340), Expect = 1e-33
 Identities = 96/485 (19%), Positives = 160/485 (32%), Gaps = 36/485 (7%)

Query: 15  SLKVLNISGNGFQDYF-PGQIVVGMTELEVLDAFNNNFTG-PLPVEIVSLKNLKHLSFGG 72
            L  L +   G  D          +  L  LD   N      L      L +LK + F  
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 73  NYFSGEIPESYSEIQ--SLEYLGLNGIGLNGTAPV-FLSLLKNLREMYIGYFNTYTGGIP 129
           N            +Q  +L +  L    L     V +   +   R M +   +       
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV------ 211

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGL--ISLT 187
              G    + +    S  IS     SL     +       + +        +GL   S+ 
Sbjct: 212 --SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE 247
            LDLS   +       F  LK+L ++ L  N +            NL+VL +  N     
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 248 LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLT 307
              N     K+  +D+  N I     +     E+L++L L  N  +      +    S+ 
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIP 384

Query: 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELD-HNLLSGEIPENLSISDSLNQLKVAYNNIAG 366
                 N+L  T+P       L+ + E    NL        +     L  L +  N  + 
Sbjct: 385 DIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVP---HLQILILNQNRFSS 440

Query: 367 KIPPSI-GNLTNLNVLSLQNNRFNG----ELPEEMF-NLKVISLINVSSNNISGEIPTSI 420
                      +L  L L  N        EL  ++F  L  + ++ ++ N ++   P   
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 421 SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480
           S   +L  +  + N L+  +        +L IL++SRNQL  P P       SL+ LD++
Sbjct: 501 SHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPNPDVFV---SLSVLDIT 555

Query: 481 YNNLN 485
           +N   
Sbjct: 556 HNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.1 bits (247), Expect = 6e-22
 Identities = 80/440 (18%), Positives = 153/440 (34%), Gaps = 40/440 (9%)

Query: 14  MSLKVLNISGNGFQDYFPG-----------QIVVGMTELEVLDAFNNNFTGPLPVEIVSL 62
           M L++L++SGNG+     G             ++    +       +N   P       L
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 63  K--NLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120
              +++HL     +        +  ++ L+ L L    +N  A      L NL+ + + Y
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 121 FNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE 179
                  +    F  L K+  +D+   +I+     +   L+ L  L L+ N LT      
Sbjct: 324 NLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----T 376

Query: 180 LSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQ 238
           +  + S+  + LS N L      + +     +L+ L +N L       F+   P+L++L 
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 239 VWGNNFTGELPENL-GRNRKLLLLDVSSNQIEGKIPRDLCKG-----ERLKSLILMQNLF 292
           +  N F+    +     N  L  L +  N ++     +LC         L+ L L  N  
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 293 SGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD 352
           +   P       +L       N+L   +         L+++++  N L    P+      
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPDVFV--- 547

Query: 353 SLNQLKVAYNNIAGKIPPS-IGNLTNLNVLSLQNNRFN--GELPEEMFNLKVISLINVSS 409
           SL+ L + +N    +   S   N  N   +++     +     P+    + + SL     
Sbjct: 548 SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607

Query: 410 NNISGEIPTSISGCISLTTV 429
           +          S  I  T  
Sbjct: 608 DEEEVLKSLKFSLFIVCTVT 627

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 50/321 (15%), Positives = 109/321 (33%), Gaps = 23/321 (7%)

Query: 12  PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFG 71
            + S++ L++S          ++   + +L+VL+   N            L NL+ L+  
Sbjct: 264 ARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 72  GNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE 131
            N        ++  +  + Y+ L    +          L+ L+ + +             
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TT 376

Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG-HIHPELSGLISLTQLD 190
              +  +  + ++   +   +P       L+    L  N+L    I   L  +  L  L 
Sbjct: 377 IHFIPSIPDIFLSGNKLV-TLPKINLTANLIH---LSENRLENLDILYFLLRVPHLQILI 432

Query: 191 LSLNCLTG-EVPESFSALKNLSLVQLFKNNLRGPFPSFV-----GDYPNLEVLQVWGNNF 244
           L+ N  +     ++ S   +L  + L +N L+  + + +         +L+VL +  N  
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
               P        L  L ++SN++   +  +      L+ L + +N    P P+      
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPA-NLEILDISRNQLLAPNPDVF---V 547

Query: 305 SLTKFRAMKNQLNGTIPAGIF 325
           SL+      N+         F
Sbjct: 548 SLSVLDITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 42/272 (15%), Positives = 84/272 (30%), Gaps = 52/272 (19%)

Query: 1   MTFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIV 60
           ++ +   +L K  ++  ++++S N  ++      ++ +  L++L    N F+     +  
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 61  S-LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIG 119
           S   +L+ L  G N                                              
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELC----------------------------------- 472

Query: 120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE 179
                       F  LS L+VL +    ++   P   S L  L  L L  N+LT  +   
Sbjct: 473 ---------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VL-SH 521

Query: 180 LSGLISLTQLDLSLNCLTGEVPESFSALK--NLSLVQLFKNNLRGPFPSFVGDYPNLEVL 237
                +L  LD+S N L    P+ F +L   +++  +         F +++        +
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWL--NHTNVTI 579

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIE 269
                +     P++      L  L       E
Sbjct: 580 AGPPADIYCVYPDSF-SGVSLFSLSTEGCDEE 610

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (346), Expect = 2e-35
 Identities = 96/478 (20%), Positives = 160/478 (33%), Gaps = 84/478 (17%)

Query: 36  VGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLN 95
           V  T L+     ++N T  +PVE  ++K+        + +    P    E + +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 96  GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPAS 155
                        L +   E+ +   N     +P     L  L      SCN   E+P  
Sbjct: 67  D-----------CLDRQAHELELN--NLGLSSLPELPPHLESLVA----SCNSLTELPEL 109

Query: 156 LSQLKLLDALFLQMNKLTGHIH---------------PELSGLISLTQLDLSLNCLTGEV 200
              LK L      +  L+                   PEL     L  +D+  N L  ++
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KL 168

Query: 201 PESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLL 260
           P+   +L+ ++      N L    P    + P L  +    N+   +LP+       L  
Sbjct: 169 PDLPPSLEFIA---AGNNQLEE-LPEL-QNLPFLTAIYADNNSLK-KLPDLPL---SLES 219

Query: 261 LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320
           +   +N +E     +L     L ++    NL    +P+      SL       N L   +
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLT-DL 272

Query: 321 PAGIFNLPLLKMIELDHNLLSGEIP--ENLSISD-----------SLNQLKVAYNNIAGK 367
           P    +L  L + E   + LS   P    L+ S            SL +L V+ N +  +
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 331

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427
           +P     L  L       N    E+PE   NLK    ++V  N +  E P        L 
Sbjct: 332 LPALPPRLERLI---ASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLR 383

Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
                 NS   E+P+    L+    L++  N L    P   +   S+  L ++   + 
Sbjct: 384 M-----NSHLAEVPELPQNLK---QLHVETNPLRE-FPDIPE---SVEDLRMNSERVV 429

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 6e-29
 Identities = 67/334 (20%), Positives = 116/334 (34%), Gaps = 47/334 (14%)

Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
           P ++S   L +      + LT  +  E   + S T+   + +      P      + +++
Sbjct: 5   PRNVSNTFLQE-PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKI 272
            +L     R               L++     +  LPE       L  L  S N +  ++
Sbjct: 63  SRLRDCLDR-----------QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-EL 106

Query: 273 PRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKM 332
           P      + L          S   P        L       NQL   +P  + N   LK+
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKI 157

Query: 333 IELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL 392
           I++D+N L  ++P+      SL  +    N +  +  P + NL  L  +   NN    +L
Sbjct: 158 IDVDNNSLK-KLPDLPP---SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KL 210

Query: 393 PEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI 452
           P+   +L+ I      +N +       +     LTT+    N L   +P     L  L++
Sbjct: 211 PDLPLSLESIVA---GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNV 264

Query: 453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
            +     L            SLT LD+S N  +G
Sbjct: 265 RDNYLTDLPELPQ-------SLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.4 bits (243), Expect = 8e-22
 Identities = 81/392 (20%), Positives = 126/392 (32%), Gaps = 70/392 (17%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL V N +     D  P         LE L   NN     LP E+ +   LK +    N 
Sbjct: 115 SLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY--FNTYTGGI---- 128
              ++P+      SLE++      L       L  L  L  +Y                 
Sbjct: 165 LK-KLPD---LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 218

Query: 129 -----------PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIH 177
                       PE   L  L  +   +  +   +P     L+ L+     +  L     
Sbjct: 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 178 PELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVL 237
                  SLT LD+S N  +  + E    L  L+      N +R    S     P+LE L
Sbjct: 278 -------SLTFLDVSENIFS-GLSELPPNLYYLNA---SSNEIR----SLCDLPPSLEEL 322

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP 297
            V  N    ELP       +L  L  S N +  ++P        LK L +  N      P
Sbjct: 323 NVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE-FP 373

Query: 298 EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357
           +   + E L     M + L   +P    NL   K + ++ N L  E P+      S+  L
Sbjct: 374 DIPESVEDLR----MNSHLA-EVPELPQNL---KQLHVETNPLR-EFPDIPE---SVEDL 421

Query: 358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN 389
           ++    +      +      L     +++  +
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 28/186 (15%)

Query: 345 PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISL 404
           P N+S +  L +     +N+  ++P    N+ +        + +    P      + +++
Sbjct: 5   PRNVSNT-FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 405 -------------INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS 451
                        + +++  +S  +P        L ++  S NSL+ E+P+    L+ L 
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 452 ILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLP 511
           + N +   L+   P        L  L +S N L  ++P   +           N    LP
Sbjct: 118 VDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKLP 169

Query: 512 RNVTCL 517
                L
Sbjct: 170 DLPPSL 175

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (337), Expect = 4e-35
 Identities = 44/351 (12%), Positives = 100/351 (28%), Gaps = 47/351 (13%)

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
            S    L              LSQ +                    +   +      +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQIETRTGR 66

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            L     +                             P    L++       + P+   R
Sbjct: 67  ALK-ATADLLEDATQ----------------------PGRVALELRSVPLP-QFPDQAFR 102

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
              L  + + +  +  ++P  + +   L++L L +N     +P  + +   L +      
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
                +P  + +       +   NL      ++L +      ++         +P SI N
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNL------QSLRLEW--TGIR--------SLPASIAN 204

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
           L NL  L ++N+  +  L   + +L  +  +++         P    G   L  +     
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
           S    +P  I +L  L  L+L        +P+ +  + +   + +  +   
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (291), Expect = 9e-29
 Identities = 50/359 (13%), Positives = 107/359 (29%), Gaps = 51/359 (14%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGI 97
            +  E L    +    P    +   +   +      + +     S     + +     G 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66

Query: 98  GLNGTAPVFLSL-LKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASL 156
            L  TA +           + +          P +   LS L+ + + +  +  E+P ++
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
            Q   L+ L L  N L   +   ++ L  L +L +       E+PE  ++          
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA------- 175

Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL 276
                           NL+ L++        LP ++   + L  L + ++ +   +   +
Sbjct: 176 --------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD 336
               +L+ L L         P   G    L +          T+P  I  L  L+ ++L 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEE 395
                               L         ++P  I  L    ++ +  +    +L + 
Sbjct: 286 GC----------------VNLS--------RLPSLIAQLPANCIILVPPH-LQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 5e-26
 Identities = 55/300 (18%), Positives = 92/300 (30%), Gaps = 23/300 (7%)

Query: 233 NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLF 292
             E L   G+       + L + ++    D +                  +         
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 293 SGPIPEELGAC--ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSI 350
                + L                 L    P   F L  L+ + +D   L  E+P+ +  
Sbjct: 69  KA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 351 SDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI----- 405
              L  L +A N +   +P SI +L  L  LS++      ELPE + +            
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 406 ----NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
                +    I   +P SI+   +L ++    + LS  +  AI  L  L  L+L      
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 462 GPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNL-CLPRNVTCLPS 519
              P        L  L L   +    +P         ++    G  NL  LP  +  LP+
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 2e-25
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 24/293 (8%)

Query: 38  MTELEVLDAFNNNFTG-PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG 96
               ++              +E  +      L         + P+    +  L+++ ++ 
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 97  IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASL 156
            GL    P  +     L  + +         +P    +L++LR L + +C    E+P  L
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLA--RNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
           +                     E  GL++L  L L    +   +P S + L+NL  +++ 
Sbjct: 171 ASTDAS---------------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214

Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS-NQIEGKIPRD 275
            + L       +   P LE L + G       P   G    L  L +   + +   +P D
Sbjct: 215 NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLD 272

Query: 276 LCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP 328
           + +  +L+ L L   +    +P  +    +        +             P
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 11/180 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQI--------VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLK 66
            L+ L+I         P  +          G+  L+ L          LP  I +L+NLK
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK 209

Query: 67  HLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG 126
            L    +  S  +  +   +  LE L L G       P        L+ + +   +    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
            +P +   L++L  LD+  C     +P+ ++QL     + +  +              + 
Sbjct: 269 -LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 23/137 (16%)

Query: 369 PPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVS-------------------S 409
                + +    L  Q +       + +   +     + +                   +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 410 NNISGEIPTSISGCIS--LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467
                     +          ++     L  + P    +L  L  + +    L   +P  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT 122

Query: 468 MQDMMSLTTLDLSYNNL 484
           MQ    L TL L+ N L
Sbjct: 123 MQQFAGLETLTLARNPL 139

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (321), Expect = 6e-32
 Identities = 53/363 (14%), Positives = 116/363 (31%), Gaps = 20/363 (5%)

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
            I       ++ ++  +   ++   + +       +  L L  N L+     +L+    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
             L+LS N L         +L  L  + L  N +       +   P++E L    NN + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG-PIPEELGACES 305
            +  + G+      + +++N+I      D     R++ L L  N        E   + ++
Sbjct: 113 RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA 365
           L       N +   +   +     LK ++L  N L+  +      +  +  + +  N + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS 425
             I  ++    NL    L+ N F+     + F  K   +  V+   +      +   C  
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG----PIPTDMQDMMSLTTLDLSY 481
            T   +              +L  L     +     G     +  + ++      +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 482 NNL 484
              
Sbjct: 346 EQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (321), Expect = 7e-32
 Identities = 58/412 (14%), Positives = 116/412 (28%), Gaps = 21/412 (5%)

Query: 79  IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL 138
           I E        +   +    L            N++E+ +   N  +     +    +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG 198
            +L+++S  +       L  L  L  L L  N +      EL    S+  L  + N ++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 199 EVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPENLGRNRK 257
                    KN+ L     N +        G    ++ L +  N        E    +  
Sbjct: 114 VSCSRGQGKKNIYLAN---NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 258 LLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN 317
           L  L++  N I   +   +    +LK+L L  N  +  +  E  +   +T      N+L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 318 GTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTN 377
             I   +     L+  +L  N        +   S +     VA   +      +    T 
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 378 LNVLSLQNNR---FNGELPEEMFNLKVISLINVS-SNNISGEIPTSISGCISLTTVDFSR 433
             +                + +  LK      +S   + +  +            +D  +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
                 I +   + +    L   +  L   +    +    L           
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (263), Expect = 3e-24
 Identities = 73/452 (16%), Positives = 142/452 (31%), Gaps = 31/452 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           ++K L++SGN         +    T+LE+L+  +N     L   + SL  L+ L    NY
Sbjct: 35  NVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
              E+        S+E L      ++  +    S  +  + +Y+   N  T     + G 
Sbjct: 92  VQ-ELLVG----PSIETLHAANNNISRVSC---SRGQGKKNIYLAN-NKITMLRDLDEGC 142

Query: 135 LSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            S+++ LD+    I         +    L+ L LQ N +   +         L  LDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-KGQVVFAKLKTLDLSS 200

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF-TGELPENL 252
           N L   +   F +   ++ + L  N L       +    NLE   + GN F  G L +  
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 253 GRNRKLLLLDVSSNQ-IEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLT-KFR 310
            +N+++  +   + + + G+   +                   P  + L A +       
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP 370
           + +      +     N    + I+         I +      +   L+     +  ++  
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVD 430
                  L+    Q      EL         + L+                         
Sbjct: 379 GRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE----------EMYVEQQ 427

Query: 431 FSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462
             +N+   +      +   L+  N    +L G
Sbjct: 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 7e-32
 Identities = 81/368 (22%), Positives = 131/368 (35%), Gaps = 48/368 (13%)

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS-LTQLDLSL 193
            +   VL++    ++  +P  L     +  L +  N LT      L  L   L  L++S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-----SLPALPPELRTLEVSG 90

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
           N LT  +P     L  LS+      +L    PS       L  L ++GN  T  LP    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPS------GLCKLWIFGNQLT-SLPVLPP 141

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
               L  L VS NQ+   +P    +   L  L    N  +  +P        L +     
Sbjct: 142 ---GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS-LPMLPS---GLQELSVSD 190

Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373
           NQL  ++P     L  L      +N L+  +P   S    L +L V+ N +   +P    
Sbjct: 191 NQLA-SLPTLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLPS 241

Query: 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433
            L  L    +  NR    LP     L  +S+     N ++  +P S+    S TTV+   
Sbjct: 242 ELKELM---VSGNRLT-SLPMLPSGLLSLSV---YRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTL--DLSYNNLNGEVPSG 491
           N LS    +A+ ++      +    +      +  ++  +L     D       GE    
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 492 GHFPAFDE 499
             +  F +
Sbjct: 354 DRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 2e-22
 Identities = 74/388 (19%), Positives = 117/388 (30%), Gaps = 94/388 (24%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            +  L I  N      P        EL  L+   N  T  LPV    L  L   S    +
Sbjct: 62  HITTLVIPDNNLTS-LPALP----PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH 115

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                    +    L  L + G  L                            +P     
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLT--------------------------SLPVLPP- 141

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
              L+ L ++   ++  +PA  S+L  L A   Q+  L     P L     L +L +S N
Sbjct: 142 --GLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSL-----PML--PSGLQELSVSDN 191

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            L   +P   S L  L     + N L    P+       L+ L V GN  T  LP     
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPS- 241

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             +L  L VS N++                           +P       SL+     +N
Sbjct: 242 --ELKELMVSGNRLTS-------------------------LPMLPSGLLSLS---VYRN 271

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLS---GEIPENLSISDSLNQLKVAYNNIAGKIPPS 371
           QL   +P  + +L     + L+ N LS    +    ++ +   +   + ++      P  
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 372 IGNLTNLNVLSLQNNRFNGELPEEMFNL 399
              L       L   R     P + +++
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 2e-21
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 43/245 (17%)

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
            N    +L+V  + +   +P  L     + +L++  N  +  +P       +L       
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS-LPALPPELRTLE---VSG 90

Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENL-----------SISDSLNQLK---V 359
           NQL  ++P     L  L +       L   +P  L           S+      L+   V
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS 419
           + N +A  +P     L  L      NN+    LP     L+    ++VS N ++  +PT 
Sbjct: 149 SDNQLA-SLPALPSELCKLWAY---NNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTL 199

Query: 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479
            S    L  +    N L+  +P   S L++   L +S N+LT  +P        L  L +
Sbjct: 200 PS---ELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLTS-LPVLPS---ELKELMV 248

Query: 480 SYNNL 484
           S N L
Sbjct: 249 SGNRL 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (314), Expect = 2e-31
 Identities = 62/360 (17%), Positives = 128/360 (35%), Gaps = 48/360 (13%)

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLT 187
             E  TL+  +++   +  +     A L   + ++ L L   ++   I     +   ++ 
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQ 96

Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE 247
           +L +  N +    P  F  +  L+++ L +N+L         + P L  L +  NN    
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-R 155

Query: 248 LPENLGRN-RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESL 306
           + ++  +    L  L +SSN++   +   L     L    +  NL S      L    ++
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNLLS-----TLAIPIAV 207

Query: 307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG 366
            +  A  N +N  +   +     L +++L HN L+                         
Sbjct: 208 EELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD------------------------ 240

Query: 367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCIS 425
                + N   L  + L  N    ++    F  ++ +  + +S+N +   +        +
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
           L  +D S N L   + +   Q   L  L L  N +   +        +L  L LS+N+ +
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 1e-28
 Identities = 58/335 (17%), Positives = 123/335 (36%), Gaps = 19/335 (5%)

Query: 152 IPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLS 211
           I ++L    +   + + M     +   E   L +   +    + +         + + + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 212 LVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVSSNQIEG 270
           L+ L    +             ++ L +  N     LP ++ +N   L +L +  N +  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 271 KIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL 329
            +PR +     +L +L +  N       +   A  SL   +   N+L   +   +   P 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PS 187

Query: 330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN 389
           L    + +NLLS      L+I  ++ +L  ++N+I   +   +     L +L LQ+N   
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT 239

Query: 390 GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRD 449
            +    + N   +  +++S N +   +         L  +  S N L   +      +  
Sbjct: 240 -DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           L +L+LS N L   +  +      L  L L +N++
Sbjct: 297 LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 9e-26
 Identities = 71/371 (19%), Positives = 117/371 (31%), Gaps = 53/371 (14%)

Query: 48  NNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFL 107
                     E ++L N K ++F  +             + +E L LN            
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND---L------- 79

Query: 108 SLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
                + E            I    F     ++ L M    I    P     + LL  L 
Sbjct: 80  ----QIEE------------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 167 LQMNKLTGHIHPEL-SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PF 224
           L+ N L+  +   +      LT L +S N L     ++F A  +L  +QL  N L     
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 225 PSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKS 284
                  P+L    V  N  +      L     +  LD S N I   +   +     L  
Sbjct: 183 SLI----PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE--LTI 230

Query: 285 LILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGE 343
           L L  N  +      L     L +     N+L   I    F  +  L+ + + +N L   
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-A 286

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVI 402
           +        +L  L +++N++   +  +      L  L L +N     L       LK +
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 344

Query: 403 SLINVSSNNIS 413
           +L   S N+  
Sbjct: 345 TL---SHNDWD 352

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 4e-29
 Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 36/340 (10%)

Query: 151 EIPASL-SQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALK 208
            +P  + ++ +LLD   L  N++   ++ +  +    L +L+L+ N ++   P +F+ L 
Sbjct: 25  AVPEGIPTETRLLD---LGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 209 NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQI 268
           NL  + L  N L+           NL  L +  N     L         L  L+V  N +
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 269 EGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-N 326
              I      G   L+ L L +   +                         +IP     +
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLT-------------------------SIPTEALSH 174

Query: 327 LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386
           L  L ++ L H  ++     +      L  L++++      + P+     NL  LS+ + 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 387 RFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS 445
                +P     +L  +  +N+S N IS    + +   + L  +      L+   P A  
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 446 QLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
            L  L +LN+S NQLT    +    + +L TL L  N L 
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (286), Expect = 3e-27
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLD 190
           F +   L  L++    +S   P + + L  L  L L+ N+L   I     +GL +LT+LD
Sbjct: 52  FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGELP 249
           +S N +   +   F  L NL  +++  N+L      +F G   +LE L +   N T    
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLEKCNLTSIPT 169

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTK 308
           E L     L++L +    I   I     K   RLK L +    +   +        +LT 
Sbjct: 170 EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 309 FRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKVAYNNIAG 366
                  L   +P     +L  L+ + L +N +S  I  + L     L ++++    +A 
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 367 KIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNIS 413
            + P     L  L VL++  N+    L E +F ++  +  + + SN ++
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 2e-25
 Identities = 55/283 (19%), Positives = 109/283 (38%), Gaps = 22/283 (7%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
               +L +  N       +       L  L+++ N +   +          L++L L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLS 349
                         +LTK    +N++   +   +F +L  LK +E+  N L   I     
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 350 IS-DSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLIN 406
              +SL QL +   N+   IP  ++ +L  L VL L++   N  + +  F  L  + ++ 
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPIP 465
           +S       +  +    ++LT++  +  +L+  +P  A+  L  L  LNLS N ++    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 466 TDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
           + + +++ L  + L    L             +  +F G   L
Sbjct: 266 SMLHELLRLQEIQLVGGQLA----------VVEPYAFRGLNYL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 73/381 (19%), Positives = 118/381 (30%), Gaps = 86/381 (22%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
             ++L++  N  +             LE L+   N  +   P    +L NL+ L    N 
Sbjct: 33  ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FG 133
                                                 L+             IP   F 
Sbjct: 91  -------------------------------------RLKL------------IPLGVFT 101

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLS 192
            LS L  LD++   I   +      L  L +L +  N L  +I     SGL SL QL L 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLE 160

Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
              LT    E+ S L  L +++L   N+             L+VL++    +   +  N 
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 253 GRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRA 311
                L  L ++   +   +P    +    L+ L L  N  S                  
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS------------------ 261

Query: 312 MKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKVAYNNIAGKIP 369
                  TI   +   L  L+ I+L    L+  +        + L  L V+ N +   + 
Sbjct: 262 -------TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

Query: 370 PSI-GNLTNLNVLSLQNNRFN 389
            S+  ++ NL  L L +N   
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 20/241 (8%)

Query: 272 IPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLL 330
           +P  +      + L L +N       +E  +   L +    +N +   +  G F NL  L
Sbjct: 26  VPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNL 82

Query: 331 KMIELDHNLLSGEIPEN-LSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRF 388
           + + L  N L   IP    +   +L +L ++ N I   +   +  +L NL  L + +N  
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 389 NGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL 447
              +    F  L  +  + +   N++     ++S    L  +     +++     +  +L
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 448 RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN 507
             L +L +S       +  +    ++LT+L +++ NL   VP           +      
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL---------AVRHLVY 249

Query: 508 L 508
           L
Sbjct: 250 L 250

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 8e-29
 Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 48/359 (13%)

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQ 188
            E  TL+  +++   +  +     A L   + ++ L L   ++   I     +   ++ +
Sbjct: 45  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQK 103

Query: 189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL 248
           L +  N +    P  F  +  L+++ L +N+L         + P L  L +  NN    +
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RI 162

Query: 249 PENLGRN-RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLT 307
            ++  +    L  L +SSN++   +   L     L    +  NL S      L    ++ 
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNLLS-----TLAIPIAVE 214

Query: 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK 367
           +  A  N +N  +   +     L +++L HN L+                          
Sbjct: 215 ELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD------------------------- 246

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISL 426
               + N   L  + L  N    ++    F  ++ +  + +S+N +   +        +L
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
             +D S N L   + +   Q   L  L L  N +   +        +L  L LS+N+ +
Sbjct: 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 3e-26
 Identities = 58/336 (17%), Positives = 123/336 (36%), Gaps = 19/336 (5%)

Query: 151 EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNL 210
            I ++L    +   + + M     +   E   L +   +    + +         + + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN-RKLLLLDVSSNQIE 269
            L+ L    +             ++ L +  N     LP ++ +N   L +L +  N + 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 270 GKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP 328
             +PR +     +L +L +  N       +   A  SL   +   N+L   +   +   P
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--P 192

Query: 329 LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
            L    + +NLLS      L+I  ++ +L  ++N+I   +   +     L +L LQ+N  
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 244

Query: 389 NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLR 448
             +    + N   +  +++S N +   +         L  +  S N L   +      + 
Sbjct: 245 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 449 DLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
            L +L+LS N L   +  +      L  L L +N++
Sbjct: 302 TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 8e-24
 Identities = 70/371 (18%), Positives = 117/371 (31%), Gaps = 53/371 (14%)

Query: 48  NNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFL 107
                     E ++L N K ++F  +             + +E L LN + +        
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------- 88

Query: 108 SLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
                               I    F     ++ L M    I    P     + LL  L 
Sbjct: 89  -------------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 167 LQMNKLTGHIHPEL-SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PF 224
           L+ N L+  +   +      LT L +S N L     ++F A  +L  +QL  N L     
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 225 PSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKS 284
                  P+L    V  N  +      L     +  LD S N I   +   +     L  
Sbjct: 189 SLI----PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE--LTI 236

Query: 285 LILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGE 343
           L L  N  +      L     L +     N+L   I    F  +  L+ + + +N L   
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVI 402
           +        +L  L +++N++   +  +      L  L L +N     L       LK +
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 350

Query: 403 SLINVSSNNIS 413
           +L   S N+  
Sbjct: 351 TL---SHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (250), Expect = 2e-22
 Identities = 72/467 (15%), Positives = 167/467 (35%), Gaps = 37/467 (7%)

Query: 27  QDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEI 86
           QD + G   + +   +++   N+         + S + ++ L+            +++  
Sbjct: 39  QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

Query: 87  QSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMAS 145
            +++ L +    +    P     +  L  + +   N  +  +P   F    KL  L M++
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLS-SLPRGIFHNTPKLTTLSMSN 156

Query: 146 CNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFS 205
            N+      +      L  L L  N+LT   H +LS + SL   ++S N L+     + +
Sbjct: 157 NNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLA 208

Query: 206 ALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS 264
               +  +    N++     P        L +L++  NN T +    L     L+ +D+S
Sbjct: 209 IPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLS 262

Query: 265 SNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAG 323
            N++E KI        +RL+ L +  N     +        +L       N L   +   
Sbjct: 263 YNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
                 L+ + LDHN +   +   LS   +L  L +++N+       ++    N+   ++
Sbjct: 320 QPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAV 374

Query: 384 QNNRFNGELPEEMFNLKVIS----------LINVSSNNISGEIPTSISGCISLTTVDFSR 433
            +   + ++  ++ +               L  ++  ++  ++  +   C +  T++  +
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434

Query: 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480
           +       +    L+    L    N+L   +     + +    L   
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 74/483 (15%), Positives = 161/483 (33%), Gaps = 48/483 (9%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  L++S N  +           T L+ L   +N  T    V++  + +L H +   N 
Sbjct: 148 KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNL 203

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            S     + +   ++E L  +    N    V   +   L  + + + N  T         
Sbjct: 204 LS-----TLAIPIAVEELDASH---NSINVVRGPVNVELTILKLQH-NNLTD--TAWLLN 252

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
              L  +D++   +   +     +++ L+ L++  N+L   ++     + +L  LDLS N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
            L   V  +      L  + L  N++      +       L+ L +  N++       L 
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHNDWDCNSLRALF 366

Query: 254 RNRKLLLLDVSSNQIEG--KIPRDLCKGERLKSLI--LMQNLFSGPIPEEL----GACES 305
           RN     +D +    +   ++   LC  E  K  +  L+Q +    + E++    G C +
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA 426

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEI----PENLSISDSLNQLKVAY 361
                ++++  +     G   L   + +E + N L  E+     E +     L  L    
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486

Query: 362 NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS 421
           +           NL    +      R +  L +   +LK      +           + +
Sbjct: 487 DT----------NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR--RTEADA 534

Query: 422 GCISLTTVDFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS 480
                  ++    +L  ++  K   Q       +L R ++   +            +   
Sbjct: 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK-QLEAKKNRNPDTRRVSHH 593

Query: 481 YNN 483
           +++
Sbjct: 594 HHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 2/113 (1%)

Query: 372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
           +G     NV   Q       +   +    V   +++                 +   V F
Sbjct: 1   VGGQQRYNVKPRQPEYK--CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF 58

Query: 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
             +++       +   R + +LNL+  Q+            ++  L + +N +
Sbjct: 59  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 3e-28
 Identities = 51/331 (15%), Positives = 110/331 (33%), Gaps = 16/331 (4%)

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
            I       ++ ++  +   ++   + +       +  L L  N L+     +L+    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG 246
             L+LS N L         +L  L  + L  N +       +   P++E L    NN + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN-LFSGPIPEELGACES 305
            +  + G+      + +++N+I      D     R++ L L  N + +    E   + ++
Sbjct: 113 RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 306 LTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA 365
           L       N +   +   +     LK ++L  N L+  +      +  +  + +  N + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS 425
             I  ++    NL    L+ N F+       F  K   +  V+   +      +   C  
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLS 456
            T   +              +L  L   +  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 4e-26
 Identities = 44/255 (17%), Positives = 91/255 (35%), Gaps = 15/255 (5%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
              ++ +V  ++    L         +  LD+S N +      DL    +L+ L L  N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 292 FSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS 351
                  +L +  +L       N +       +   P ++ +   +N +S  +    S  
Sbjct: 70  LYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG-ELPEEMFNLKVISLINVSSN 410
                + +A N I        G  + +  L L+ N  +     E   +   +  +N+  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 411 NISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD 470
            I  ++   +     L T+D S N L+  +         ++ ++L  N+L   I   ++ 
Sbjct: 180 FIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 471 MMSLTTLDLSYNNLN 485
             +L   DL  N  +
Sbjct: 236 SQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 7e-25
 Identities = 53/336 (15%), Positives = 103/336 (30%), Gaps = 22/336 (6%)

Query: 79  IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL 138
           I E        +   +    L            N++E+ +   N  +     +    +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG 198
            +L+++S  +  E    L  L  L  L L  N +      EL    S+  L  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 199 EVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPENLGRNRK 257
                    KN+ L     N +        G    ++ L +  N        E    +  
Sbjct: 114 VSCSRGQGKKNIYLAN---NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 258 LLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN 317
           L  L++  N I   +   +    +LK+L L  N  +  +  E  +   +T      N+L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 318 GTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTN 377
             I   +     L+  +L  N        +        +++        K+         
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS 413
           +  L         +LP    +     LI +  ++  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFAD----RLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 1e-23
 Identities = 46/329 (13%), Positives = 103/329 (31%), Gaps = 22/329 (6%)

Query: 61  SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120
           +    K      +     +        +++ L L+G  L+  +   L+    L  + +  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 121 FNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
            N        +  +LS LR LD+ +  +       L     ++ L    N ++  +    
Sbjct: 68  -NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR 118

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQV 239
                   + L+ N +T            +  + L  N +    F         LE L +
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
             N    ++   +    KL  LD+SSN++   +  +      +  + L  N     I + 
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
           L   ++L  F    N  +       F     ++  +    +  ++        ++  L  
Sbjct: 233 LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTL-G 289

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
            Y     +  P         +++L ++  
Sbjct: 290 HYGAYCCEDLP---APFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 18/273 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           ++K L++SGN          +   T+LE+L+  +N     L   + SL  L+ L    NY
Sbjct: 35  NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
              E+        S+E L       N  + V  S  +  + +Y+   N  T     + G 
Sbjct: 92  VQ-ELLVG----PSIETLHAAN---NNISRVSCSRGQGKKNIYLAN-NKITMLRDLDEGC 142

Query: 135 LSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            S+++ LD+    I         +    L+ L LQ N +   +         L  LDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-KGQVVFAKLKTLDLSS 200

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT-GELPENL 252
           N L   +   F +   ++ + L  N L       +    NLE   + GN F  G L +  
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 253 GRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSL 285
            +N+++  +   + +       + C    L   
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 25/162 (15%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL 383
             N    K+ ++  + L   +      + ++ +L ++ N ++      +   T L +L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
            +N    E  + + +L  +  +++++N +       +    S+ T+  + N++S  +  +
Sbjct: 66  SSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 444 ISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
               +    + L+ N++T     D      +  LDL  N ++
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 392 LPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS 451
           + E   N     +  V+ +++   + +      ++  +D S N LS      ++    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 452 ILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +LNLS N L      D++ + +L TLDL+ N +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV 92

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (276), Expect = 7e-26
 Identities = 80/468 (17%), Positives = 164/468 (35%), Gaps = 28/468 (5%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
            +  +L+   N  +     +I+SL  L+ L    N         +   Q LEYL L+   
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-- 78

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQ 158
            N    +      NL+ + + +       I  EFG +S+L+ L +++ ++       ++ 
Sbjct: 79  -NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 159 LKLLDALFLQMNKLTGHIHPEL---SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL 215
           L +   L +          PE        SL  +  +       +  S   + NL L  +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 216 FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGEL---------PENLGRNRKLLLLDVSSN 266
                      F+     L+      N     +            L  +  +    +S+ 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 267 QIEGKIPRDL--CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG--TIPA 322
           +++G++        G  LK+L + Q +       +    E  +        ++G   +  
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 323 GIFN-LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG---NLTNL 378
              + +     ++  +NLL+  + EN      L  L +  N +  ++         + +L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 379 NVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS 437
             L +  N  + +  +      K +  +N+SSN ++  I   +     +  +D   N + 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK 434

Query: 438 GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
             IPK + +L  L  LN++ NQL          + SL  + L  N  +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.2 bits (247), Expect = 3e-22
 Identities = 62/375 (16%), Positives = 119/375 (31%), Gaps = 13/375 (3%)

Query: 120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE 179
             N  +     +  +LSKLR+L ++   I     +     + L+ L L  NKL       
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---KIS 85

Query: 180 LSGLISLTQLDLSLNCLTG-EVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238
               ++L  LDLS N      + + F  +  L  + L   +L       +      +VL 
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE 298
           V G  +     E+    +      +       K    +          L  +     + +
Sbjct: 146 VLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK 358
              +       +   N     +            I +   +    +        S++ +K
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF-----SISNVK 258

Query: 359 VAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT 418
           +           S  +L  L++  + ++ F             +++ N + +        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT--GPIPTDMQDMMSLTT 476
             S       +DFS N L+  + +    L +L  L L  NQL     I      M SL  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 477 LDLSYNNLNGEVPSG 491
           LD+S N+++ +   G
Sbjct: 379 LDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 2e-17
 Identities = 70/415 (16%), Positives = 135/415 (32%), Gaps = 44/415 (10%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +LK L++S N F      +    M++L+ L     +      + I  L   K L   G  
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 75  FSGEIPESYSEIQSLEYLGLNGIG-------LNGTAPVFLSL-LKNLREMYIGYFNTYTG 126
           +  +      +  + E L +           L+ +     +L L N++ +      +Y  
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKL---LDALFLQMNKLTGHIHPELSGL 183
            I  +  T  KL  L + +   +      + QL     +    +   KL G +       
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 184 I-----SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238
                 +L+   +  +         +    N+++     +  R               L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE 298
              N  T  + EN G   +L  L +  NQ              LK L  +  + +     
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQ--------------LKELSKIAEMTTQMK-- 374

Query: 299 ELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357
                 SL +    +N ++     G       L  + +  N+L+  I   L     +  L
Sbjct: 375 ------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVL 426

Query: 358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNN 411
            +  N I   IP  +  L  L  L++ +N+    +P+ +F  L  +  I + +N 
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP 465
           N+S N IS    + I     L  +  S N +           ++L  L+LS N+L   I 
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS 85

Query: 466 TDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
                 ++L  LDLS+N  +  +P    F
Sbjct: 86  CHP--TVNLKHLDLSFNAFD-ALPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 30/179 (16%)

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS 403
           +P++  +S     L ++ N I+      I +L+ L +L + +NR    L   +F      
Sbjct: 15  VPKD--LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVF------ 65

Query: 404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG- 462
                                 L  +D S N L  +I        +L  L+LS N     
Sbjct: 66  -----------------KFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDAL 105

Query: 463 PIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCLPSIY 521
           PI  +  +M  L  L LS  +L              +             +   L    
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 4e-24
 Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 33/298 (11%)

Query: 183 LISLTQLDLS--LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
             SL+Q      ++    +   ++   +  +L    +N         +        LQ+ 
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLN 67

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
             N +  LP+NL     + +L+++ N +   +P        L+ L    N  S  +PE  
Sbjct: 68  RLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNRLST-LPELP 119

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
            + + L       NQL   +P       LL+ I  D+N L+  +PE  +   SL  L V 
Sbjct: 120 ASLKHL---DVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT---SLEVLSVR 168

Query: 361 YNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL----KVISLINVSSNNISGEI 416
            N +   +P    +L  L+   +  N     LP          +         N I+  I
Sbjct: 169 NNQL-TFLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL 474
           P +I       T+    N LS  I +++SQ       +  R   +            L
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 2e-18
 Identities = 69/410 (16%), Positives = 136/410 (33%), Gaps = 40/410 (9%)

Query: 60  VSLKNLKHLSFGGNYFSGEIPESYSEI----QSLEYLGLNGIGLN-GTAPVFLSLLKNLR 114
           + L    + S   N F   I  +Y++        E   L G   N   + +   L+    
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 115 EMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG 174
           E+ +   N  +  +P       ++ VL++    +   +P   + L+ LDA   +++ L  
Sbjct: 63  ELQLNRLNLSS--LPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNRLSTL-- 115

Query: 175 HIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNL 234
              PEL    SL  LD+  N LT  +PE  + L+ ++      NN     P       +L
Sbjct: 116 ---PEL--PASLKHLDVDNNQLT-MLPELPALLEYINA----DNNQLTMLPELPT---SL 162

Query: 235 EVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG 294
           EVL V  N  T  LPE       L  LDVS+N +E  +P    +    +   +       
Sbjct: 163 EVLSVRNNQLT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCREN 217

Query: 295 PI---PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS 351
            I   PE + + +         N L+  I   +         +     +   + +    +
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNT 275

Query: 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN 411
                               +  + +        N F+  L + + +       +     
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL-DRLSDTVSARNTSGFREQ 334

Query: 412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
           ++  +        +   +     +++ +  ++      L+  NL +  L 
Sbjct: 335 VAAWLEK----LSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 54/330 (16%), Positives = 99/330 (30%), Gaps = 35/330 (10%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            + VL I+ N      P         LE LDA +N  +  LP       +LKHL    N 
Sbjct: 81  QITVLEITQNALIS-LPELP----ASLEYLDACDNRLST-LPELP---ASLKHLDVDNNQ 131

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +  +PE       LEY+  +   L     +   L  +L  + +   N  T  +P     
Sbjct: 132 LT-MLPE---LPALLEYINADNNQLT----MLPELPTSLEVLSVRN-NQLT-FLPEL--- 178

Query: 135 LSKLRVLDMASCNISGEIPASLSQL----KLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
              L  LD+++  +   +PA   +     +       + N++T HI   +  L     + 
Sbjct: 179 PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE 250
           L  N L+  + ES S              +         +  +  +       F      
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHG--PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310
           ++ +       +  +N         L      ++    +      +   L    +  + R
Sbjct: 295 DVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFRE----QVAAWLEKLSASAELR 349

Query: 311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLL 340
                +         +   L    L   LL
Sbjct: 350 QQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (261), Expect = 4e-24
 Identities = 75/376 (19%), Positives = 136/376 (36%), Gaps = 33/376 (8%)

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPE-LSGLISL 186
              F  L  L+ L +        I   +   L  L  L L  N+    +     +GL +L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 187 TQLDLSLNCLTGEV--PESFSALKNLSLVQLFKNNLRGPFPSFVGDY-PNLEVLQVWGNN 243
             L L+   L G V     F  L +L ++ L  NN++   P+          VL +  N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 244 FTGELPENLGR--NRKLLLLDVSSNQIEGKIPRDLC--------KGERLKSLILMQNLFS 293
                 E+L     +   LL +SS  ++      L         K   + +L L  N F 
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS 353
             + +      + TK +++    +  + +           + D+    G     +     
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEASGVK---- 278

Query: 354 LNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNN 411
                ++ + I   +  S+  + T+L  L+L  N  N ++ +  F  L  +  +N+S N 
Sbjct: 279 --TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 412 ISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD 470
           +   I + +      L  +D S N +     ++   L +L  L L  NQL   +P  + D
Sbjct: 335 LG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392

Query: 471 -MMSLTTLDLSYNNLN 485
            + SL  + L  N  +
Sbjct: 393 RLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 64/338 (18%), Positives = 119/338 (35%), Gaps = 58/338 (17%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDY-PNLEVLQVWGNN 243
            +  +DLSLN +      SFS L++L  +++ +        +       +L +L++  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 244 FTGELPEN-LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA 302
           F  +L          L +L ++                 L   +L  N F          
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCN--------------LDGAVLSGNFFKP-------- 127

Query: 303 CESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL---SISDSLNQLK 358
             SL       N +    PA  F N+    +++L  N +   I E             L+
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR 186

Query: 359 VAYNNI--------AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL----KVISLIN 406
           ++   +          +   +    T++  L L  N F   + +  F+     K+ SLI 
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 407 VSSNNISGEIPTSISGCI-----------SLTTVDFSRNSLSGEIPKAI-SQLRDLSILN 454
            +S N+      +                 + T D S++ +   + K++ S   DL  L 
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 455 LSRNQLTGPIPTDMQD-MMSLTTLDLSYNNLNGEVPSG 491
           L++N++   I  +    +  L  L+LS N L G + S 
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 73/391 (18%), Positives = 136/391 (34%), Gaps = 53/391 (13%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
            L+ L +               G++ L +L    N F   L       L NL+ L+    
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQC 113

Query: 74  YF-SGEIPESY-SEIQSLEYLGLNGIGLNGTAPV-FLSLLKNLREMYIGYFNTYTGGIPP 130
                 +  ++   + SLE L L    +    P  F   ++    + +  FN        
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL-TFNKVKSICEE 172

Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
           +           +            LS + L D   +    L            S+T LD
Sbjct: 173 DLLNFQGKHFTLL-----------RLSSITLQD---MNEYWLGWEKCGNPFKNTSITTLD 218

Query: 191 LSLNCLTGEVPESF-SALKNLSLVQLFKNNLRGPFPSFV-GDYPNLEVLQVWGNNFTGEL 248
           LS N     + + F  A+    +  L  +N      SF   ++ + +     G   +   
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS--- 275

Query: 249 PENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLT 307
                    +   D+S ++I   + + +      L+ L L QN  +  I +   A   LT
Sbjct: 276 --------GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD--NAFWGLT 323

Query: 308 KFRAM---KNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKV 359
               +   +N L G+I + +F NL  L++++L +N +   + +     L    +L +L +
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLP---NLKELAL 378

Query: 360 AYNNIAGKIPPSI-GNLTNLNVLSLQNNRFN 389
             N +   +P  I   LT+L  + L  N ++
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 46/301 (15%), Positives = 93/301 (30%), Gaps = 44/301 (14%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
            ++  + +  N+       +  R + L  L V        I  +  +G   L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 291 LFSGPIPEE-LGACESLTKFRAMKNQLNGT-IPAGIF-NLPLLKMIELDHNLLSGEIPEN 347
            F   +         +L      +  L+G  +    F  L  L+M+ L  N +    P  
Sbjct: 90  QFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA- 147

Query: 348 LSISDSLNQLKV---AYNNIAGKIPPSI-----------GNLTNLNVLSLQNNRFNGELP 393
            S   ++ +  V    +N +   I                 L+++ +  +       E  
Sbjct: 148 -SFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 394 EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV-----DFSRNSLSGEIPKAISQLR 448
              F    I+ +++S N     +       I+ T +       S N  S           
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 449 D----------LSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYNNLNGEVPSGGHFPAF 497
           +          +   +LS++++   +   +      L  L L+ N +N ++       AF
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEIN-KIDDN----AF 319

Query: 498 D 498
            
Sbjct: 320 W 320

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 14/145 (9%)

Query: 349 SISDSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFNGELPEEMF----NLKVIS 403
            +   +N + ++ N+IA ++   S   L +L  L ++       +    F    +L ++ 
Sbjct: 27  ELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 404 LINVSSNNISGEIPTSI-SGCISLTTVDFSRNSL-SGEIPKAI-SQLRDLSILNLSRNQL 460
           L     N    ++ T   +G  +L  +  ++ +L    +       L  L +L L  N +
Sbjct: 86  L---DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 461 TGPIPTDMQD-MMSLTTLDLSYNNL 484
               P      M     LDL++N +
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 37/240 (15%), Positives = 71/240 (29%), Gaps = 24/240 (10%)

Query: 2   TFDNWSSLSKPKMSL---KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVE 58
              N+       + L    + +++         G      T +  LD   N F   +   
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKR 231

Query: 59  IVSLKNLKHLS--FGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSL------- 109
                    +      N ++      ++  +  +     G+  +G     LS        
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291

Query: 110 ------LKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLL 162
                   +L ++ +   N     I    F  L+ L  L+++   +          L  L
Sbjct: 292 KSVFSHFTDLEQLTLAQ-NEINK-IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349

Query: 163 DALFLQMNKLTGHIHPEL-SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
           + L L  N +   +  +   GL +L +L L  N L       F  L +L  + L  N   
Sbjct: 350 EVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 66/332 (19%), Positives = 120/332 (36%), Gaps = 46/332 (13%)

Query: 138 LRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCL 196
           LRV+  +   +  ++P  L        L LQ NK+T  I       L +L  L L  N +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 197 TGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
           +   P +F+ L  L  + L KN L+  P          L+ L+V  N  T          
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGL 144

Query: 256 RKLLLLDVSSNQI-EGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
            +++++++ +N +    I     +G ++L  + +     +  IP+  G   SLT+     
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDG 201

Query: 314 NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKVAYNNIAGKI 368
           N++   + A     L  L  + L  N +S  +      N      L +L +  N +  K+
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTP---HLRELHLNNNKLV-KV 255

Query: 369 PPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT 428
           P  + +   + V+ L NN  +  +    F                   P   +   S + 
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS-AIGSNDFCP-----------------PGYNTKKASYSG 297

Query: 429 VDFSRNSLS-GEIPK-AISQLRDLSILNLSRN 458
           V    N +   EI       +   + + L   
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 19/263 (7%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
           P+  +L +  N  T     +    + L  L + +N+I    P       +L+ L L +N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 292 FSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLL-SGEIPEN-L 348
               +PE     ++L + R  +N++   +   +F  L  + ++EL  N L S  I     
Sbjct: 112 LKE-LPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINV 407
                L+ +++A  NI   IP   G   +L  L L  N+   ++       L  ++ + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 408 SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG----- 462
           S N+IS     S++    L  +  + N L  ++P  ++  + + ++ L  N ++      
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 463 -PIPTDMQDMMSLTTLDLSYNNL 484
              P       S + + L  N +
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 61/274 (22%), Positives = 109/274 (39%), Gaps = 24/274 (8%)

Query: 128 IPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
           I    F  L  L  L + +  IS   P + + L  L+ L+L  N+L   +  ++    +L
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTL 123

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG---PFPSFVGDYPNLEVLQVWGNN 243
            +L +  N +T      F+ L  + +V+L  N L+       +F G    L  +++   N
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTN 182

Query: 244 FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGA 302
            T  +P+ L  +  L  L +  N+I  K+     KG   L  L L  N  S      L  
Sbjct: 183 IT-TIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD-------SLN 355
              L +     N+L   +P G+ +   ++++ L +N +S  I  N            S +
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296

Query: 356 QLKVAYNNI-AGKIPPSI-GNLTNLNVLSLQNNR 387
            + +  N +   +I PS    +     + L N +
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 19/286 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
              +L++  N   +   G     +  L  L   NN  +   P     L  L+ L    N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FG 133
              E+PE     ++L+ L ++   +        + L  +  + +G     + GI    F 
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLS 192
            + KL  + +A  NI+  IP  L     L  L L  NK+T  +    L GL +L +L LS
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG------ 246
            N ++     S +   +L  + L  N L    P  + D+  ++V+ +  NN +       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 247 ELPENLGRNRKLLLLDVSSNQIE-GKIPRDLCKG-ERLKSLILMQN 290
             P    +      + + SN ++  +I     +      ++ L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 377 NLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
           +L V+   +     ++P+++  +  ++ L    +N I+           +L T+    N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDL---QNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP 495
           +S   P A + L  L  L LS+NQL   +P  M    +L  L +  N +  +V       
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPK--TLQELRVHENEIT-KVRKS---- 139

Query: 496 AFDEASFAGNPNL 508
                 F G   +
Sbjct: 140 -----VFNGLNQM 147

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 9e-23
 Identities = 75/396 (18%), Positives = 131/396 (33%), Gaps = 42/396 (10%)

Query: 89  LEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNI 148
                     +  T  +    L  L  +     +            L+ L  L   S NI
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNI 76

Query: 149 SGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALK 208
           +  +   LSQ   L  L    NKLT   + +++ L  LT L+   N LT       S   
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 209 NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQI 268
            L+ +   +N L       V     L  L    N    +L   +    +L  LD S N+I
Sbjct: 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 269 EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLP 328
                 D+ + + L  L    N  +     +L     LT      N+L   I   +  L 
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 329 LLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
            L   +   N L+      LS    L  L     ++  +I   + + T L     +  R 
Sbjct: 234 QLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRK 287

Query: 389 NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLR 448
             EL  ++ +   + L++  +  I+ E+   +S    L  +  +   L+ E+   +S   
Sbjct: 288 IKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNT 339

Query: 449 DLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
            L  L+     +     + +  + +L     +    
Sbjct: 340 KLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 65/428 (15%), Positives = 136/428 (31%), Gaps = 44/428 (10%)

Query: 58  EIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMY 117
           +     N                 S  ++ +L  L  +   +       +  L  L ++ 
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLI 70

Query: 118 IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIH 177
               N  T     +    + L  L   S  ++  +   ++ L  L  L    NKLT    
Sbjct: 71  CTS-NNITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL-- 121

Query: 178 PELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVL 237
            ++S    LT L+ + N LT           N  L +L  +  +      V     L  L
Sbjct: 122 -DVSQNPLLTYLNCARNTLT-----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

Query: 238 QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP 297
               N  T     ++ +N+ L  L+  +N I      DL +  +L  L    N  +    
Sbjct: 176 DCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-- 227

Query: 298 EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL 357
            ++     LT F    N L   +      L  L  +      L       + ++ +   +
Sbjct: 228 -DVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-----EIDLTHNTQLI 278

Query: 358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP 417
                         + + T L +L  Q      EL   +     +  + +++  ++ E+ 
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD 334

Query: 418 TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTL 477
             +S    L ++      +  +   ++ ++  L+    +  Q        + +  +  T+
Sbjct: 335 --VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTN--NSLTI 388

Query: 478 DLSYNNLN 485
            +S + L+
Sbjct: 389 AVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 65/417 (15%), Positives = 127/417 (30%), Gaps = 47/417 (11%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L  L+   +   D      +  +T L  L   +NN T    +++    NL +L+   N 
Sbjct: 43  TLTSLDCHNSSITDMTG---IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNK 96

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +  +    + +  L YL  +    N    + +S    L  +              +   
Sbjct: 97  LT-NLD--VTPLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTLTE----IDVSH 146

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
            ++L  LD        ++   ++    L  L    NK+T     ++S    L +L+   N
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTN 201

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            +T ++    +    L+ +    N L       V     L       N  T EL   +  
Sbjct: 202 NIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VST 252

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             KL  L      +      DL    +L             +  ++     L        
Sbjct: 253 LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAA 307

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAGKIPPSI 372
            +   +   +   P L  + L++  L+      L +S    L  L     +I  +   S+
Sbjct: 308 GIT-ELD--LSQNPKLVYLYLNNTELT-----ELDVSHNTKLKSLSCVNAHI--QDFSSV 357

Query: 373 GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
           G +  LN       +      E + N  +   ++    +  G       G   +   
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 28/287 (9%)

Query: 232 PNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
           P+  +L +  N+ + EL ++     + L  L + +N+I     +      +L+ L + +N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLL-SGEIPENL 348
                IP       SL + R   N++   +P G+F  L  +  IE+  N L +       
Sbjct: 113 HLVE-IPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINV 407
                LN L+++   +   IP        LN L L +N+    +  E       +  + +
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 408 SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467
             N I      S+S   +L  +    N LS  +P  +  L+ L ++ L  N +T     D
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 468 MQDMM------SLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
              +           + L  N +         +     A+F    + 
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPV--------PYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 59/272 (21%), Positives = 110/272 (40%), Gaps = 21/272 (7%)

Query: 128 IPPE-FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
           +  + F  L  L  L + +  IS     + S L+ L  L++  N L   I P L    SL
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSL 125

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR-GPFPSFVGDYPNLEVLQVWGNNFT 245
            +L +  N +       FS L+N++ +++  N L    F     D   L  L++     T
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 246 GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGACE 304
             +P++L     L  L +  N+I+  I  +      +L  L L  N         L    
Sbjct: 186 -GIPKDLPET--LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN-------LSISDSLNQL 357
           +L +     N+L+  +PAG+ +L LL+++ L  N ++ ++  N              N +
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299

Query: 358 KVAYNNIA-GKIPPSI-GNLTNLNVLSLQNNR 387
            +  N +   ++ P+    +T+   +   N +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 18/263 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
              +L++  N   +        G+  L  L   NN  +         L+ L+ L    N+
Sbjct: 55  DTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
              EIP +     SL  L ++   +        S L+N+  + +G       G  P    
Sbjct: 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSL 193
             KL  L ++   ++  IP  L   + L+ L L  NK+   I  E L     L +L L  
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN-- 251
           N +      S S L  L  + L  N L    P+ + D   L+V+ +  NN T ++  N  
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284

Query: 252 -----LGRNRKLLLLDVSSNQIE 269
                  +      + + +N + 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISL 426
           +P  I    +  +L LQNN  + EL ++ F  L+ +  + + +N IS     + S    L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYNNLN 485
             +  S+N L  EIP  +     L  L +  N++   +P  +   + ++  +++  N L 
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLE 160

Query: 486 GEVPSGGHF 494
                 G F
Sbjct: 161 NSGFEPGAF 169

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 82/468 (17%), Positives = 160/468 (34%), Gaps = 34/468 (7%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPES-YSEIQSLEYLGLNGI 97
              + L    N+ +     +I  L  L+ L    N     +    +   Q LEYL ++  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH- 109

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASL 156
             N    +    + +LR + +  FN +    +  EFG L+KL  L +++          +
Sbjct: 110 --NRLQNISCCPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
           + L L   L   ++        E   + + T L L  +  +    +   ++  L  +QL 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 217 KNNL-RGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLL---------LDVSSN 266
              L        +     L       N     +      + KL           L++ + 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 267 QIEGKIPRDLCKGER--LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLN--GTIPA 322
            I  +I R+        LKSL++        +  +        +       ++    I  
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 323 GIFNLPL-LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVL 381
                P     +    N+ +  + +  S    L  L +  N +            N++ L
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 382 SLQNNRFNGELPEEMFNLKV-----ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL 436
              +   N  L    ++        I ++N+SSN ++G +   +     +  +D   N +
Sbjct: 406 ETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI 462

Query: 437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYNN 483
              IPK ++ L+ L  LN++ NQL   +P  + D + SL  + L  N 
Sbjct: 463 M-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 2e-16
 Identities = 70/368 (19%), Positives = 137/368 (37%), Gaps = 31/368 (8%)

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASL-SQLKLLDALFLQMNKLTGHIHPELSGLISLT 187
            P+   LS+LRVL ++   I   +   +    + L+ L +  N+L    +     + SL 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLR 124

Query: 188 QLDLSLNCLTGEVPES--FSALKNLSLVQLFKNNL-RGPFPSFVGDYPNLEVLQVWGNNF 244
            LDLS N     +P    F  L  L+ + L      +         + +  +L +   + 
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 245 TGELPENL-GRNRKLLLLDVSSNQIEGKIPRDL---CKGERLKSLILMQNLFSGPIPEEL 300
            G   E+L   N  +L L    N +               +L ++ L        +    
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
                 T        +  T    +          +++  +      NL+I++ +++ +  
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI-----YNLTITERIDREEFT 298

Query: 361 YNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-LKVISLINVSSNNISGEIPTS 419
           Y+  A         L +L +  ++N  F     E +++    +++  +S ++        
Sbjct: 299 YSETA---------LKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG-PIPTDM-QDMMSLTTL 477
                S T ++F++N  +  + +  S L+ L  L L RN L        M ++M SL TL
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 478 DLSYNNLN 485
           D+S N+LN
Sbjct: 409 DVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 63/337 (18%), Positives = 120/337 (35%), Gaps = 22/337 (6%)

Query: 19  LNISGNGFQDYFPGQIVVGMTE-LEVLDAFNNNFTGPLPVEIVSLKNL--KHLSFGGNYF 75
           L++     +      + +  T  L ++   N+ F+  + + + +L +L   ++       
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF----NTYTGGIPPE 131
              +       +    L +    +  T    + L +      + Y      T T  I  E
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 132 FGT-----LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISL 186
             T     L  L +  + +        A  S    ++   L ++              S 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT- 245
           T L+ + N  T  V +  S LK L  + L +N L+  F        N+  L+    +   
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNS 414

Query: 246 ---GELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA 302
                          +L+L++SSN + G + R L    ++K L L  N     IP+++  
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTH 471

Query: 303 CESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHN 338
            ++L +     NQL  ++P G+F  L  L+ I L  N
Sbjct: 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 27/340 (7%)

Query: 165 LFLQMNKLTGHIHP-ELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG- 222
           L L  N ++  +   ++S L  L  L LS N +       F   ++L  + +  N L+  
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 223 PFPSFVGDYPNLEVLQVWGNNFTGELPEN--LGRNRKLLLLDVSSNQIEGKIPRDLCKGE 280
                     +L  L +  N+F   LP     G   KL  L +S+ +   ++        
Sbjct: 116 SCCPMA----SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHL 169

Query: 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF----NLPLLKMIELD 336
            L  ++L    +     E        T    +    N      +      L  L++  + 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 337 HNLLSGEIPENLSISD----SLNQLKVAYNNIAGKIPPSIGNL---TNLNVLSLQNNRFN 389
            N  + +             +L  + + +     K    +        +  L++ N    
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 390 GELPEEMFN-----LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
             +  E F      LK + + +V +           S    +     S +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
                 + LN ++N  T  +      +  L TL L  N L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 59/421 (14%), Positives = 138/421 (32%), Gaps = 58/421 (13%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL+ L++S N F      +    +T+L  L      F     ++++ + +L       + 
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDL 178

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNG----TAPVFLSL--LKNLREMYIGYFNTYTGGI 128
            S  I    +E   +    +  +  +     +  V +S+  L +L+   I   +     +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 129 P---PEFGTLSKLRVLDMASCNISGEI---------PASLSQLKLLDALFLQMNKLTGHI 176
                E      L  + +     + +          P  +  L + +    +        
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 177 HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEV 236
           + E + L SL    +            +S    +++  L  ++             +   
Sbjct: 299 YSETA-LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 237 LQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296
           L    N FT  + +     ++L  L +  N               LK+            
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNG--------------LKNF----------- 392

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIFN-----LPLLKMIELDHNLLSGEIPENLSIS 351
            +     ++++    +   LN ++ +  ++        + ++ L  N+L+G +   L   
Sbjct: 393 FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--P 449

Query: 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSN 410
             +  L +  N I   IP  + +L  L  L++ +N+    +P+ +F  L  +  I +  N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

Query: 411 N 411
            
Sbjct: 508 P 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 9e-12
 Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 8/221 (3%)

Query: 2   TFDNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVS 61
             + ++       SL + ++    F       +     E+ +     ++      V   S
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEA-LYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 62  LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSL--LKNLREMYIG 119
             +   L+F  N F+  + +  S ++ L+ L L   GL     V L    + +L  + + 
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 120 YFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASL-SQLKLLDALFLQMNKLTGHIHP 178
             +  +            + VL+++S  ++G +   L  ++K+LD   L  N++   I  
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIM-SIPK 467

Query: 179 ELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNN 219
           +++ L +L +L+++ N L       F  L +L  + L  N 
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 59/275 (21%), Positives = 90/275 (32%), Gaps = 22/275 (8%)

Query: 250 ENLGRNRKLLLLDVSSNQI-EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTK 308
           E  G  R L  L    +   +     D+ K   LK L +        I         ++ 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 309 FRAM---KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLS------ISDSLNQLKV 359
            + +     ++ GT P  +       +  L+   +S    +         +   L  L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL-------PEEMFNLKVISLINVSSNNI 412
           A  +        +     L+ L L +N   GE        P +   L+V++L N      
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 413 SGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQ-LRDLSILNLSRNQLTGPIPTDMQDM 471
           SG      +  + L  +D S NSL              L+ LNLS   L           
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA-- 274

Query: 472 MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNP 506
             L+ LDLSYN L+   PS    P     S  GNP
Sbjct: 275 -KLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 46/291 (15%), Positives = 83/291 (28%), Gaps = 27/291 (9%)

Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF-VGDYPNLEVLQVWGNNFTGELPEN 251
            NCL     E +   ++L  +    +          +    +L+ L V        +   
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 252 LGRN---RKLLLLDVSSNQIEGKIPRDL--CKGERLKSLILMQNLFSGPIPE--ELGAC- 303
             R      L  L + + ++ G  P  L    G  L  L L    ++       EL    
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 304 -ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS----DSLNQLK 358
              L      +          +   P L  ++L  N   GE     ++      +L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 359 VAYNNIA---GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISG 414
           +    +    G           L  L L +N                ++ +N+S   +  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-- 265

Query: 415 EIPTSISGCI--SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463
                +   +   L+ +D S N L    P    +L  +  L+L  N     
Sbjct: 266 ---KQVPKGLPAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 49/297 (16%), Positives = 85/297 (28%), Gaps = 45/297 (15%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKN---LKHLSFG 71
           SL+ L    +   D      ++    L+ L          +    + +     L+ L+  
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 72  GNYFSGEIPESYSEIQ--SLEYLGLNGIGLNG----TAPVFLSLLKNLREMYIGYFNTYT 125
               +G  P    E     L  L L  +         A +   L   L+ + I       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSL 162

Query: 126 GGIPPEFGTLSKLRVLDMASCNISGEI-------PASLSQLKLLDALFLQMNKLTGHIHP 178
                +      L  LD++     GE        P     L++L      M   +G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 179 ELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ 238
             +  + L  LDLS N L                                     L  L 
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWP-----------------------SQLNSLN 259

Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP 295
           +       ++P+ L     L +LD+S N+++   P    +  ++ +L L  N F   
Sbjct: 260 LSFTGLK-QVPKGLPAK--LSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 25/187 (13%)

Query: 13  KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGG 72
           K  LKVL+I+     + F  + V     L  LD  +N   G   +               
Sbjct: 148 KPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGL--------------- 191

Query: 73  NYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE- 131
              S   P  +  +Q L          +G      +    L+ + + + N+         
Sbjct: 192 --ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPS 248

Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDL 191
               S+L  L+++   +        ++L +LD   L  N+L    +P    L  +  L L
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDR--NPSPDELPQVGNLSL 303

Query: 192 SLNCLTG 198
             N    
Sbjct: 304 KGNPFLD 310

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 14/238 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFT--GPLPVEIVSLKNLKHLSFGG 72
           S   L +  N  Q    G     +T+L  L   +N  +  G          +LK+L    
Sbjct: 29  SATRLELESNKLQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 73  NYFSGEIPESYSEIQSLEYLGL--NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPP 130
           N     +  ++  ++ LE+L    + +       VFLSL +NL  + I   +T+T     
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDIS--HTHTRVAFN 143

Query: 131 E-FGTLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLT 187
             F  LS L VL MA  +          ++L+ L  L L   +L   + P   + L SL 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNF 244
            L++S N         +  L +L ++    N++             +L  L +  N+F
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 21/257 (8%)

Query: 240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL--FSGPIP 297
                T  +P  +  +     L++ SN+++        K  +L  L L  N   F G   
Sbjct: 15  NSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 298 EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD--SLN 355
           +      SL       N +  T+ +    L  L+ ++  H+ L  ++ E        +L 
Sbjct: 72  QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 129

Query: 356 QLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSN 410
            L +++ +        I   L++L VL +  N F      ++F    NL  + L   S  
Sbjct: 130 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL---SQC 185

Query: 411 NISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ 469
            +  ++  +  +   SL  ++ S N+           L  L +L+ S N +      ++Q
Sbjct: 186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 470 DMM-SLTTLDLSYNNLN 485
               SL  L+L+ N+  
Sbjct: 245 HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 25/205 (12%)

Query: 313 KNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAGKIP 369
            N+L  ++P G+F  L  L  + L  N LS +   + S     SL  L +++N +   + 
Sbjct: 37  SNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 94

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSI-SGCI 424
            +   L  L  L  Q++         +F    NL  + +   S  +        I +G  
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTR-VAFNGIFNGLS 150

Query: 425 SLTTVDFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
           SL  +  + NS      P   ++LR+L+ L+LS+ QL    PT    + SL  L++S+NN
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 484 LNGEVPSGGHFPAFDEASFAGNPNL 508
                       + D   +    +L
Sbjct: 211 FF----------SLDTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 55/272 (20%), Positives = 88/272 (32%), Gaps = 44/272 (16%)

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH--IHPELSGLI 184
           GIP           L++ S  +         +L  L  L L  N L+          G  
Sbjct: 25  GIPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR--GPFPSFVGDYPNLEVLQVWGN 242
           SL  LDLS N +   +  +F  L+ L  +    +NL+    F  F+              
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------- 124

Query: 243 NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEE-L 300
                        R L+ LD+S           +  G   L+ L +  N F      +  
Sbjct: 125 ------------LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 301 GACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
               +LT     + QL   +    F +L  L+++ + HN             +SL  L  
Sbjct: 172 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 360 AYNNIAGKIPPSI--GNLTNLNVLSLQNNRFN 389
           + N+I             ++L  L+L  N F 
Sbjct: 231 SLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 59/260 (22%), Positives = 95/260 (36%), Gaps = 14/260 (5%)

Query: 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
                 +     N   E+P+ +  +    LL++  NQI+            L+ L L +N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL- 348
                         +L       N+L  TIP G F  L  LK + L +N +   IP    
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 349 SISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPE--EMFNLKVISLI 405
           +   SL +L +        I       L+NL  L+L       E+P    +  L  + L 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDL- 214

Query: 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP 465
             S N++S   P S  G + L  +   ++ +      A   L+ L  +NL+ N LT    
Sbjct: 215 --SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 466 TDMQDMMSLTTLDLSYNNLN 485
                +  L  + L +N  N
Sbjct: 273 DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 7/232 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           + ++LN+  N  Q          +  LE+L    N+           L NL  L    N 
Sbjct: 65  NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FG 133
            +     ++  +  L+ L L    +        + + +LR + +G     +  I    F 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFE 182

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLS 192
            LS LR L++A CN+  EIP  L+ L  LD L L  N L+  I P    GL+ L +L + 
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239

Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
            + +      +F  L++L  + L  NNL            +LE + +  N +
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 8/231 (3%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
           T   +L+   N            L++L+ L    N+       +++ + +L  L L    
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPA-SL 156
           L          L  L+E+++   N     IP   F  +  LR LD+        I   + 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRN-NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
             L  L  L L M  L   I P L+ LI L +LDLS N L+   P SF  L +L  + + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSN 266
           ++ ++    +   +  +L  + +  NN T  LP +       L  + +  N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
            L++L +S N  +         G+  L  L+ F+N  T  +P    V L  LK L    N
Sbjct: 89  HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNN 146

Query: 74  YFSGEIPESYSEIQSLEYLGLNGI-GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF 132
                   +++ I SL  L L  +  L+  +      L NLR + +           P  
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLRE--IPNL 203

Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDL 191
             L KL  LD++  ++S   P S   L  L  L++  +++   I       L SL +++L
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINL 262

Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
           + N LT    + F+ L +L  + L  N   
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 57/261 (21%), Positives = 92/261 (35%), Gaps = 16/261 (6%)

Query: 231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN 290
                 +       + E+P+ +        L++  N I+            L+ L L +N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN-L 348
                         SL       N L   IP+G F  L  L+ + L +N +   IP    
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 349 SISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPE--EMFNLKVISLI 405
           +   SL +L +        I       L NL  L+L       ++P    +  L+ + + 
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEM- 225

Query: 406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP 465
             S N+     P S  G  SL  +    + +S     A   L  L  LNL+ N L+  +P
Sbjct: 226 --SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LP 282

Query: 466 TDM-QDMMSLTTLDLSYNNLN 485
            D+   +  L  L L +N  N
Sbjct: 283 HDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 25/203 (12%)

Query: 313 KNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKVAYNNIAGKIPP 370
           +N +   I A  F +L  L++++L  N +  +I     +   SLN L++  N +   IP 
Sbjct: 84  ENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPS 140

Query: 371 SI-GNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSISGCIS 425
                L+ L  L L+NN     +P   F    +L  + L       +      +  G  +
Sbjct: 141 GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE--LKKLEYISEGAFEGLFN 197

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
           L  ++    ++  ++P  ++ L  L  L +S N      P     + SL  L +  + ++
Sbjct: 198 LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 486 GEVPSGGHFPAFDEASFAGNPNL 508
                       +  +F G  +L
Sbjct: 256 ----------LIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 7/232 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           + + LN+  N  Q          +  LEVL    N+           L +L  L    N+
Sbjct: 76  NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FG 133
            +     ++  +  L  L L    +        + + +L  + +G        I    F 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFE 193

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLS 192
            L  L+ L++  CNI  ++P  L+ L  L+ L +  N     I P    GL SL +L + 
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVM 250

Query: 193 LNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
            + ++     +F  L +L  + L  NNL             L  L +  N +
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 16/235 (6%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
           +    L+   NN           L +L+ L  G N        +++ + SL  L L    
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPA-SL 156
           L          L  LRE+++   N     IP   F  +  L  LD+        I   + 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRN-NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
             L  L  L L M  +   + P L+ L+ L +L++S N      P SF  L +L  + + 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 217 KNNLR----GPFPSFVGDYPNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSN 266
            + +       F        +L  L +  NN +  LP +     R L+ L +  N
Sbjct: 251 NSQVSLIERNAFDGL----ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 9/210 (4%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
            L+VL +  N  +         G+  L  L+ F+N  T  +P      L  L+ L    N
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN 157

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIG-LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEF 132
                   +++ + SL  L L  +  L   +      L NL+ + +G          P  
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKD--MPNL 214

Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDL 191
             L  L  L+M+  +     P S   L  L  L++  ++++  I      GL SL +L+L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNL 273

Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
           + N L+    + F+ L+ L  + L  N   
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 55/267 (20%), Positives = 101/267 (37%), Gaps = 17/267 (6%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
             ++ L +  N  T     +L R   L  L ++SN I   I  D       L+ L L  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 291 LFSGPIPEEL-GACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL 348
             S  +         SLT    + N         +F +L  L+++ + +     +I    
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 349 SIS-DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR--------FNGELPEEMFNL 399
                 L +L++  +++    P S+ ++ N++ L L   +         +     E   L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 400 KVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459
           +   L     + +S     S+    +   V  +  SL  ++ K ++Q+  L  L  SRNQ
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 460 LTGPIPTDMQDMM-SLTTLDLSYNNLN 485
           L   +P  + D + SL  + L  N  +
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 50/283 (17%), Positives = 94/283 (33%), Gaps = 31/283 (10%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
               + +    +    +P  L     +  LD+S+N+I      DL +   L++L+L  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 292 FSGPIPEELGACESLTKFRAMK---NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPEN 347
            +  I E   +  SL     +    N L   + +  F  L  L  + L  N     + E 
Sbjct: 88  INT-IEE--DSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGET 142

Query: 348 LSISD--SLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVIS 403
              S    L  L+V   +   KI       LT L  L +  +        +   +++ +S
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVS 201

Query: 404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS--------QLRDLSILNL 455
            + +        +   +    S+  ++     L       +S        +      + +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 456 SRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFD 498
           +   L   +   +  +  L  L+ S N L   VP G     FD
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG----IFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 9e-14
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 314 NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPS 371
           N++   I          L+ + L  N ++  I E+  S   SL  L ++YN ++  +  S
Sbjct: 62  NRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSS 118

Query: 372 I-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSI-SGCISLTT 428
               L++L  L+L  N +       +F +L  + ++ V + +   +I     +G   L  
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG-- 486
           ++   + L    PK++  ++++S L L   Q    +   +    S+  L+L   +L+   
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 487 --EVPSG-----GHFPAFDEASFAGNPNLCLPRNVTCLPS 519
             E+ +G          F            + + +  +  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 49/265 (18%), Positives = 106/265 (40%), Gaps = 18/265 (6%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
             ++ LD  NN  T     ++    NL+ L    N  +    +S+S + SLE+L L+   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE--FGTLSKLRVLDMASCNISGEIPA-S 155
           L+  +  +   L +L  + +   N Y   +     F  L+KL++L + + +   +I    
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLG-NPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 156 LSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL 215
            + L  L+ L +  + L  +    L  + +++ L L +      +        ++  ++L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 216 FKNNL---------RGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSN 266
              +L          G   S +        +++   +   ++ + L +   LL L+ S N
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIK-KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 267 QIEGKIPRDLCKG-ERLKSLILMQN 290
           Q++  +P  +      L+ + L  N
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 19/208 (9%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
           SL  LN+ GN ++      +   +T+L++L   N +    +  +    L  L+ L    +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG 133
                 P+S   IQ++ +L L+         +F+ +  ++  +                 
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE---------------- 228

Query: 134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
            L    +       +S     SL +      + +    L   +   L+ +  L +L+ S 
Sbjct: 229 -LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLR 221
           N L       F  L +L  + L  N   
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 15/212 (7%)

Query: 282 LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLL 340
            + + L  N  S        AC +LT      N L   I A  F  L LL+ ++L  N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 341 SGEIPEN-LSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF- 397
              +          L+ L +    +  ++ P +   L  L  L LQ+N     LP++ F 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 398 ---NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN 454
              NL  + L     N IS     +  G  SL  +   +N ++   P A   L  L  L 
Sbjct: 151 DLGNLTHLFL---HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 455 LSRNQLTGPIPTD-MQDMMSLTTLDLSYNNLN 485
           L  N L+  +PT+ +  + +L  L L+ N   
Sbjct: 208 LFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 46/210 (21%), Positives = 74/210 (35%), Gaps = 7/210 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           + + + + GN                L +L   +N            L  L+ L    N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 75  FSGEIP-ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-F 132
               +   ++  +  L  L L+  GL    P     L  L+ +Y+   N     +P + F
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQA-LPDDTF 149

Query: 133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDL 191
             L  L  L +    IS     +   L  LD L L  N++  H+HP     L  L  L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 192 SLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
             N L+    E+ + L+ L  ++L  N   
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 8/210 (3%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG-I 97
              + +    N  +        + +NL  L    N  +     +++ +  LE L L+   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPA-S 155
            L    P     L  L  +++         + P  F  L+ L+ L +    +   +P  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDR-CGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 156 LSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ 214
              L  L  LFL  N+++  +      GL SL +L L  N +    P +F  L  L  + 
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
           LF NNL       +     L+ L++  N +
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 408 SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD 467
               +   +P  I    +   +    N +S     +    R+L+IL L  N L       
Sbjct: 19  PQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 468 MQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
              +  L  LDLS N     V            +F G   L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPA---------TFHGLGRL 107

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
            +   +       + T       +  L  I L +  ++ ++   +  + ++  L +   +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIH 77

Query: 364 IAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC 423
                 P I  L+NL  L +       +    +  L  ++L+++S +     I T I+  
Sbjct: 78  AT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
             + ++D S N    +I   +  L +L  LN+  + +       ++D   L  L      
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 484 LNGE 487
           + G+
Sbjct: 193 IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 61  SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120
           + K   +   G +  +     + +++ SL Y+ L  I +       +    N++++ I  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN- 74

Query: 121 FNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
            N +     P    LS L  L +   +++ +   +LS L  L  L +  +     I  ++
Sbjct: 75  -NIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
           + L  +  +DLS N    ++      L  L  + +  + +       + D+P L  L  +
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 241 GNNFTGE 247
                G+
Sbjct: 190 SQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 9/160 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL  + ++     D      +     ++ L   N + T   P+    L NL+ L   G  
Sbjct: 45  SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKD 99

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            + +   + S + SL  L ++    + +    ++ L  +  + + Y N     I P   T
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY-NGAITDIMP-LKT 157

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG 174
           L +L+ L++    +       +     L+ L+     + G
Sbjct: 158 LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 345 PENLSISDS-LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELP-EEMFNLKVI 402
            +N++I DS            +     +   + +L  ++L N         E   N+K +
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDL 71

Query: 403 SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462
           ++   ++ + +      ISG  +L  +      ++ +    +S L  L++L++S +    
Sbjct: 72  TI---NNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 463 PIPTDMQDMMSLTTLDLSYNNL 484
            I T +  +  + ++DLSYN  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 10/184 (5%)

Query: 256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ 315
           +  L   +  +         +     L  + L     +      +    ++         
Sbjct: 23  KAYLNGLLGQSSTANITEAQM---NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 316 LNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL 375
                P  I  L  L+ + +    ++ +   NLS   SL  L ++++     I   I  L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 376 TNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
             +N + L  N    ++   +  L  +  +N+  + +       I     L  +     +
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 436 LSGE 439
           + G+
Sbjct: 193 IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 10/187 (5%)

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
           S  K      L  +          + + SLT + L+   +T           N+  + + 
Sbjct: 20  STFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTIN 74

Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL 276
             +      + +    NLE L++ G + T +   NL     L LLD+S +  +  I   +
Sbjct: 75  NIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD 336
               ++ S+ L  N     I   L     L       + ++      I + P L  +   
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 337 HNLLSGE 343
              + G+
Sbjct: 190 SQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR 433
                    L  +        +M +L  I+L   ++ N++ ++ T I    ++  +  + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITL---ANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG 491
              +      IS L +L  L +    +T     ++  + SLT LD+S++  +  + + 
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 52/273 (19%), Positives = 100/273 (36%), Gaps = 20/273 (7%)

Query: 162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
           +         +   I P         + +L    +T  V    + L ++  +    ++++
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 222 GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER 281
                 +   PN+  L + GN  T    + L   + L  L +  N+I+  +   L   ++
Sbjct: 57  SV--QGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110

Query: 282 LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLS 341
           LKSL L  N  S      L     L       N++  T    +  L  L  + L+ N +S
Sbjct: 111 LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 166

Query: 342 GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV 401
            +I   L+    L  L ++ N+I+  +   +  L NL+VL L +     +      NL V
Sbjct: 167 -DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
            + +  +  ++    P  IS        +   +
Sbjct: 223 PNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 6e-14
 Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 16/287 (5%)

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
            ++    ++   +++  +    ++L  +D +    + +   +   +  L ++T+L L+ N
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 75

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            LT    +  + LKNL  + L +N ++    S + D   L+ L +  N  + ++   L  
Sbjct: 76  KLTDI--KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS-DI-NGLVH 129

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
             +L  L + +N+I       L +  +L +L L  N  S      L     L      KN
Sbjct: 130 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN 185

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
            +  +    +  L  L ++EL       +   + S     N +K    ++      S   
Sbjct: 186 HI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS 421
                 +      F  E+    +    I       +    +    + 
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 1e-13
 Identities = 60/369 (16%), Positives = 118/369 (31%), Gaps = 54/369 (14%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
               N+      D         +  ++ + A N++      ++   L N+  L   GN  
Sbjct: 23  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN-- 75

Query: 76  SGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTL 135
                    ++  ++                L+ LKNL  +++         +      L
Sbjct: 76  ---------KLTDIK---------------PLTNLKNLGWLFLD--ENKIKDLSS-LKDL 108

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
            KL+ L +    IS +I   L  L  L++L+L  NK+T  I   LS L  L  L L  N 
Sbjct: 109 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRN 255
           ++       + L  L  + L KN++       +    NL+VL+++      +   +    
Sbjct: 165 ISDI--VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 256 RKLLLLDVSSNQIEG----KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA 311
                +  +   +          D  K      L    N  S    + +   ++  +F  
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

Query: 312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS 371
              Q    +    ++        +D  ++  ++     I+      K  Y         +
Sbjct: 281 RVTQPLKEVYTVSYD--------VDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKN 332

Query: 372 IGNLTNLNV 380
            G+  N N 
Sbjct: 333 GGHEWNFNT 341

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 22/206 (10%)

Query: 282 LKSLILMQNLFSGPIP--EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNL 339
           +   I +      PI       A     K    K  +   +      L  +  I  +++ 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 340 LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG-ELPEEMFN 398
           +   + + +    ++ +L +  N +   I P + NL NL  L L  N+       +++  
Sbjct: 55  IK-SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKK 110

Query: 399 LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458
           LK +SL     N IS +I   +     L ++    N ++      +S+L  L  L+L  N
Sbjct: 111 LKSLSL---EHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 459 QLTGPIPTDMQDMMSLTTLDLSYNNL 484
           Q++      +  +  L  L LS N++
Sbjct: 164 QISD--IVPLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)

Query: 261 LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320
               S  I+   P D           L +   +  +        S+ +  A  + +  ++
Sbjct: 4   TITVSTPIKQIFPDDAFA--ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV 58

Query: 321 PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNV 380
             GI  LP +  + L+ N L+ +I + L+   +L  L +  N I   +   + +L  L  
Sbjct: 59  Q-GIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKS 113

Query: 381 LSLQNNRFNGELP--EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG 438
           LSL++N  + ++     +  L+ + L    +N I+    T +S    L T+    N +S 
Sbjct: 114 LSLEHNGIS-DINGLVHLPQLESLYL---GNNKIT--DITVLSRLTKLDTLSLEDNQIS- 166

Query: 439 EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +I   ++ L  L  L LS+N ++      +  + +L  L+L     
Sbjct: 167 DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS 413
           + +       I  +I P           +L+       + +    L  I  I  ++++I 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 414 GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMS 473
             +   I    ++T +  + N L+ +I K ++ L++L  L L  N++       ++D+  
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 474 LTTLDLSYNNLN 485
           L +L L +N ++
Sbjct: 111 LKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L  L +  N  +D      +  + +L+ L   +N  +    +    L  L+ L  G N 
Sbjct: 88  NLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNK 142

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +       S +  L+ L L    ++   P  L+ L  L+ +Y+     +   +      
Sbjct: 143 IT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS--KNHISDLRA-LAG 195

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L  L VL++ S     +     S L + + +      L       +S      + ++  +
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

Query: 195 CLTGEVPESFSALKNLSLVQ 214
                   SF   + +++ +
Sbjct: 254 LPEFTNEVSFIFYQPVTIGK 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 51/303 (16%), Positives = 106/303 (34%), Gaps = 44/303 (14%)

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L+    +     N++  +    + L  +  L      +T  I   +  L +L  L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            +T         L  ++ ++L  N L+      +    +++ L +     T      L  
Sbjct: 74  QIT--DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN 314
              L +L +  NQI      ++                       L    +L        
Sbjct: 128 LSNLQVLYLDLNQI-----TNI---------------------SPLAGLTNLQYLSIGNA 161

Query: 315 QLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN 374
           Q++   P  + NL  L  ++ D N +S      L+   +L ++ +  N I+  + P + N
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSP-LAN 215

Query: 375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN 434
            +NL +++L N           +N  ++    V   + +   P +IS   +  + + + N
Sbjct: 216 TSNLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

Query: 435 SLS 437
             S
Sbjct: 274 LTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 54/280 (19%), Positives = 97/280 (34%), Gaps = 42/280 (15%)

Query: 205 SALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS 264
            AL N   +   K+N+         D   +  L  +G   T    E +     L+ L++ 
Sbjct: 16  PALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 265 SNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI 324
            NQI      DL                       L     +T+     N L     + I
Sbjct: 72  DNQIT-----DL---------------------APLKNLTKITELELSGNPL--KNVSAI 103

Query: 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384
             L  +K ++L    ++      L+   +L  L +  N I   I P +  LTNL  LS+ 
Sbjct: 104 AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIG 159

Query: 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
           N + +      + NL  ++ +    N IS +I   ++   +L  V    N +S   P  +
Sbjct: 160 NAQVSDL--TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--L 213

Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +   +L I+ L+   +T        +++    +       
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 14/185 (7%)

Query: 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
             A  +  K  A K+ +  T+     +L  +  +      ++  I E +   ++L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLEL 70

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS 419
             N I   + P + NLT +  L L  N         +  L+ I  ++++S  I+   P  
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479
           ++G  +L  +    N ++  I   ++ L +L  L++   Q++   P  + ++  LTTL  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 480 SYNNL 484
             N +
Sbjct: 181 DDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 49/316 (15%), Positives = 109/316 (34%), Gaps = 50/316 (15%)

Query: 61  SLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGY 120
           +L N   ++ G +  +  + ++  ++  +  L   G G+       +  L NL  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK- 71

Query: 121 FNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
            +     + P    L+K+  L+++   +   + A ++ L+ +  L L   ++T  + P L
Sbjct: 72  -DNQITDLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD-VTP-L 125

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
           +GL +L  L L LN +T       + L NL  + +    +     + + +   L  L+  
Sbjct: 126 AGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKAD 181

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
            N  +      L     L+ + + +NQI                               L
Sbjct: 182 DNKISDI--SPLASLPNLIEVHLKNNQISDV--------------------------SPL 213

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
               +L         +         NL +        N++ G     ++ +   +    A
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYA 266

Query: 361 YNNIAGKIPPSIGNLT 376
             N+   +   I N++
Sbjct: 267 SPNLTWNLTSFINNVS 282

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 81/431 (18%), Positives = 138/431 (32%), Gaps = 80/431 (18%)

Query: 111 KNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE----IPASLSQLKLLDALF 166
            +++ + I                L + +V+ +  C ++      I ++L     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 167 LQMNKLTG----HIHPEL-SGLISLTQLDLSLNCLTGE----VPESFSALKNLSLVQLFK 217
           L+ N+L       +   L +    + +L L   CLTG     +  +   L  L  + L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 218 NNLRGPFPSFVGD-----YPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQI 268
           N L       + +        LE LQ+   + +      L   L        L VS+N I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 269 EGKIPRDLCKG-----ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAG 323
                R LC+G      +L++L L     +         C  L                 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTS------DNCRDLCG--------------I 222

Query: 324 IFNLPLLKMIELDHNLLSGE-----IPENLSISDSLNQLKVAYNNI----AGKIPPSIGN 374
           + +   L+ + L  N L         P  L  S  L  L +    I     G +   +  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 375 LTNLNVLSLQNNRFNGE--------LPEEMFNLKVISLINVSSNNISGE----IPTSISG 422
             +L  LSL  N    E        L E    L+ + +    S + +        + ++ 
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV---KSCSFTAACCSHFSSVLAQ 339

Query: 423 CISLTTVDFSRNSLSGEIPKAISQ-LRD----LSILNLSRNQLT----GPIPTDMQDMMS 473
              L  +  S N L     + + Q L      L +L L+   ++      +   +    S
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 474 LTTLDLSYNNL 484
           L  LDLS N L
Sbjct: 400 LRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 49/345 (14%), Positives = 107/345 (31%), Gaps = 62/345 (17%)

Query: 185 SLTQLDLSLNCLTGE-VPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
            +  LD+    L+     E    L+   +V+L    L                       
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEA 43

Query: 244 FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-----ERLKSLILMQNLFS----G 294
              ++   L  N  L  L++ SN++       + +G      +++ L L     +    G
Sbjct: 44  RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL-----LKMIELDHNLLSGE----IP 345
            +   L    +L +     N L       +    L     L+ ++L++  LS      + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 346 ENLSISDSLNQLKVAYNNIAGKIPPSIG-----NLTNLNVLSLQNNRFNGE----LPEEM 396
             L       +L V+ N+I       +      +   L  L L++     +    L   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 397 FNLKVISLINVSSNNISGE-----IPTSISGCISLTTVDFSRNSLSGE----IPKAISQL 447
            +   +  + + SN +         P  +     L T+      ++ +    + + +   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 448 RDLSILNLSRNQLTGP-----IPTDMQDMMSLTTLDLSYNNLNGE 487
             L  L+L+ N+L          T ++    L +L +   +    
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 63/334 (18%), Positives = 105/334 (31%), Gaps = 62/334 (18%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGM----TELEVLDAFNNNFT----GPLPVEIVSLKNLK 66
           +L+ L++S N   D     +  G+      LE L     + +     PL   + +  + K
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173

Query: 67  HLSFGGNYFSGEIPESYSEI-----QSLEYLGL--NGIGLNGTAPVFLSLLKN--LREMY 117
            L+   N  +        +        LE L L   G+  +    +   +     LRE+ 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 118 IGYFNTYTGGI----PPEFGTLSKLRVLDMASCNISGE----IPASLSQLKLLDALFLQM 169
           +G       G+    P      S+LR L +  C I+ +    +   L   + L  L L  
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 170 NKLTGHIHPELSGLI-----SLTQLDLSLNCLT-------GEVPESFSALKNLSL----- 212
           N+L       L   +      L  L +     T         V      L  L +     
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

Query: 213 ----VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVS 264
               V+     L  P          L VL +   + +      L   L  N  L  LD+S
Sbjct: 354 EDAGVRELCQGLGQP-------GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 265 SNQIEGKIPRDLCKG-----ERLKSLILMQNLFS 293
           +N +       L +        L+ L+L    +S
Sbjct: 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 76/395 (19%), Positives = 118/395 (29%), Gaps = 92/395 (23%)

Query: 9   LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHL 68
           L  P   ++ L++               G   L                       L+ L
Sbjct: 80  LQTPSCKIQKLSLQNCCLTG-------AGCGVLS--STLRTL------------PTLQEL 118

Query: 69  SFGGNYFSGE--------IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKN--LREMYI 118
               N             + +    ++ L  L    +      P+   L      +E+ +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKL-QLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 119 GYFNTYTGGIPPEFGTLS----KLRVLDMASCNISGE----IPASLSQLKLLDALFLQMN 170
              +    G+      L     +L  L + SC ++ +    +   ++    L  L L  N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 171 KLTGH-----IHPELSGLISLTQLDLSLNCLT-------GEVPESFSALKNLSL------ 212
           KL            L     L  L +    +T         V  +  +LK LSL      
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 213 ---VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSS 265
               +L    L  P          LE L V   +FT          L +NR LL L +S+
Sbjct: 298 DEGARLLCETLLEPGCQ-------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 266 NQIEGKIPRDLCKG-----ERLKSLILMQNLFS----GPIPEELGACESLTKFRAMKNQL 316
           N++E    R+LC+G       L+ L L     S      +   L A  SL +     N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 317 NGTIPAGIFNL--------PLLKMIELDHNLLSGE 343
                AGI  L         LL+ + L     S E
Sbjct: 411 G---DAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 52/263 (19%)

Query: 255 NRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFS----GPIPEELGACESLTKF 309
           +  +  LD+   ++      +L    ++ + + L     +      I   L    +L + 
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI----A 365
               N+L      G+    +L+ ++                   + +L +    +     
Sbjct: 62  NLRSNELG---DVGV--HCVLQGLQTPSC--------------KIQKLSLQNCCLTGAGC 102

Query: 366 GKIPPSIGNLTNLNVLSLQNNRFNGE--------LPEEMFNLKVISLINVSSNNISGE-- 415
           G +  ++  L  L  L L +N             L +    L+ + L      ++S    
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL---EYCSLSAASC 159

Query: 416 --IPTSISGCISLTTVDFSRNSLSGEIPKAISQ-LRD----LSILNLSRNQLT----GPI 464
             + + +        +  S N ++    + + Q L+D    L  L L    +T      +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 465 PTDMQDMMSLTTLDLSYNNLNGE 487
              +    SL  L L  N L   
Sbjct: 220 CGIVASKASLRELALGSNKLGDV 242

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 19/194 (9%)

Query: 314 NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPS 371
           N L   + +  F + P L++++L    +   I +        L+ L +  N I   +   
Sbjct: 38  NPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALG 94

Query: 372 I-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNI-SGEIPTSISGCISLTT 428
               L++L  L          L      +LK +  +NV+ N I S ++P   S   +L  
Sbjct: 95  AFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 429 VDFSRN---SLSGEIPKAISQLRDLSI-LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           +D S N   S+     + + Q+  L++ L+LS N +   I       + L  L L  N L
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQL 212

Query: 485 NGEVPSGGHFPAFD 498
              VP G     FD
Sbjct: 213 K-SVPDG----IFD 221

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 38/236 (16%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQN 290
            + + L +  N        +     +L +LD+S  +I+  I     +    L +LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENL- 348
                                       ++  G F  L  L+ +      L+  +     
Sbjct: 87  PIQ-------------------------SLALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 349 SISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF----NLKVIS 403
               +L +L VA+N I     P    NLTNL  L L +N+    +          + +++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 404 L-INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN 458
           L +++S N ++  I       I L  +    N L         +L  L  + L  N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 53/228 (23%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 127 GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL-SGLIS 185
            +P         + LD++   +      S      L  L L   ++   I       L  
Sbjct: 25  NLPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR----GPFPSFVGDYPNLEVLQVWG 241
           L+ L L+ N +      +FS L +L  +   + NL      P     G    L+ L V  
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI----GHLKTLKELNVAH 133

Query: 242 NNFTGELPE-----NLGRNRKLLLLDVSSNQIEGKIPRDLCKG-----ERLKSLILMQNL 291
           N             NL     L  LD+SSN+I+  I     +          SL L  N 
Sbjct: 134 NLIQ-SFKLPEYFSNLT---NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 292 FSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHN 338
            +  I         L +     NQL  ++P GIF  L  L+ I L  N
Sbjct: 189 MNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 28/192 (14%)

Query: 320 IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV---AYNNIAGKIPPSI-GNL 375
           IP  +      K ++L  N L   +        S  +L+V   +   I   I      +L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLR-HLGSYSF--FSFPELQVLDLSRCEIQ-TIEDGAYQSL 75

Query: 376 TNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSISGCISLTTVDF 431
           ++L+ L L  N     L    F    +L+ +        N++      I    +L  ++ 
Sbjct: 76  SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA---VETNLASLENFPIGHLKTLKELNV 131

Query: 432 SRNSL-SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLT----TLDLSYNNLNG 486
           + N + S ++P+  S L +L  L+LS N++     TD++ +  +     +LDLS N +N 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 487 EVPSGGHFPAFD 498
            +  G    AF 
Sbjct: 191 FIQPG----AFK 198

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 48/209 (22%), Positives = 65/209 (31%), Gaps = 56/209 (26%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
            L  L ++GN  Q         G++ L+ L A   N        I  LK LK L+   N 
Sbjct: 77  HLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN- 134

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                      IQS +                                         F  
Sbjct: 135 ----------LIQSFKLPEY-------------------------------------FSN 147

Query: 135 LSKLRVLDMASCNISGEIPA----SLSQLKLLDA-LFLQMNKLTGHIHPELSGLISLTQL 189
           L+ L  LD++S  I   I       L Q+ LL+  L L +N +   I P     I L +L
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKEL 205

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKN 218
            L  N L       F  L +L  + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM-QDMMS 473
           +IP ++    S   +D S N L      +     +L +L+LSR ++   I     Q +  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 474 LTTLDLSYNNL 484
           L+TL L+ N +
Sbjct: 78  LSTLILTGNPI 88

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 33/249 (13%), Positives = 79/249 (31%), Gaps = 38/249 (15%)

Query: 239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE 298
           V   +       +   + +L   ++S  +                            +  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-------------------------VLQS 366

Query: 299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK 358
           EL +C+ L +      +           L +  +  L +   + +    L   D +    
Sbjct: 367 ELESCKELQEL-----EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 359 VAY--NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEI 416
           +    +    +         ++ VL L +      +   +  L +++ +++S N +   +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG-PIPTDMQDMMSLT 475
           P +++    L  +  S N+L   +   ++ L  L  L L  N+L        +     L 
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 476 TLDLSYNNL 484
            L+L  N+L
Sbjct: 537 LLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 36/295 (12%)

Query: 162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR 221
           L A  L             +G  S  +  L  +          +  + L   +L      
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST 362

Query: 222 GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER 281
               S +     L+ L+         +   +     LL    +          D     R
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM---R 418

Query: 282 LKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLS 341
              L  +++ F             +         L  T+   +  L L+  ++L HN L 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR 476

Query: 342 GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV 401
             +P  L+    L  L+ + N +  +    + NL  L  L L NNR   +          
Sbjct: 477 -ALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ-QSAA------- 525

Query: 402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS---GEIPKAISQLRDLSIL 453
                             +  C  L  ++   NSL    G   +    L  +S +
Sbjct: 526 ---------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 21/217 (9%)

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ 356
             +    E L +      +    + + + +   L+ +E ++      I   +   D L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQN-----NRFNGELPEEMFNLKVISLINVSSNN 411
            K      +         L  ++ +         ++F  E          + +++++  +
Sbjct: 401 EKETLQYFS--------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDM 471
           ++  +   +   + +T +D S N L   +P A++ LR L +L  S N L   +   + ++
Sbjct: 453 LT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANL 507

Query: 472 MSLTTLDLSYNNLNG--EVPSGGHFPAFDEASFAGNP 506
             L  L L  N L     +      P     +  GN 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 10/187 (5%)

Query: 33  QIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYL 92
            I++ M  L+ L            ++ V      +L    + F  E      E   +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 93  GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEI 152
            L    L  T    L  L  +  + + + N     +PP    L  L VL  +   +   +
Sbjct: 447 HLAHKDL--TVLCHLEQLLLVTHLDLSH-NRLRA-LPPALAALRCLEVLQASDNALE-NV 501

Query: 153 PASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALKNL- 210
              ++ L  L  L L  N+L      + L     L  L+L  N L  +       L  + 
Sbjct: 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEML 559

Query: 211 -SLVQLF 216
            S+  + 
Sbjct: 560 PSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 38/254 (14%), Positives = 74/254 (29%), Gaps = 54/254 (21%)

Query: 129 PPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFL-----------QMNKLTGHIH 177
             +  T  +L   ++ S   S  + + L   K L  L              M  L   ++
Sbjct: 342 CRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 178 PE--LSGLISLTQLD--------LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF 227
            +  L    +L  +D           +    E         ++ ++ L   +L       
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH 458

Query: 228 VGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287
           +     +  L +  N     LP  L   R L +L  S N +E              ++  
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--------------NV-- 501

Query: 288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPA--GIFNLPLLKMIELDHNLLSGEIP 345
                     + +     L +     N+L     A   + + P L ++ L  N L  E  
Sbjct: 502 ----------DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 346 ENLSISDSLNQLKV 359
               +++ L  +  
Sbjct: 551 IQERLAEMLPSVSS 564

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 8e-12
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 18/185 (9%)

Query: 305 SLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNN 363
             T     +N L  T           L  + LD   L+ ++  + ++   L  L +++N 
Sbjct: 32  DTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLP-VLGTLDLSHNQ 88

Query: 364 IAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTS 419
           +   +P     L  L VL +  NR    LP         L+ + L     N +   +P  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL---KGNELK-TLPPG 142

Query: 420 I-SGCISLTTVDFSRNSLSGEIPKAI-SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTL 477
           + +    L  +  + N+L+ E+P  + + L +L  L L  N L   IP        L   
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 478 DLSYN 482
            L  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 46/184 (25%), Positives = 64/184 (34%), Gaps = 15/184 (8%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
             T L LS N L      +      L+ + L +  L        G  P L  L +  N  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQL 89

Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGAC 303
              LP        L +LDVS N++   +P    +G   L+ L L  N     +P   G  
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPP--GLL 144

Query: 304 ESLTKFRA---MKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
               K        N L   +PAG+   L  L  + L  N L   IP+    S  L    +
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 360 AYNN 363
            + N
Sbjct: 203 -HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 9/181 (4%)

Query: 64  NLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNT 123
           +   L    N        +      L  L L+   L     V    L  L  + + + N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSH-NQ 88

Query: 124 YTGGIPPEFGTLSKLRVLDMASCNISGEIPASL-SQLKLLDALFLQMNKLTGHIHPEL-S 181
               +P    TL  L VLD++   ++  +P      L  L  L+L+ N+L   + P L +
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 182 GLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWG 241
               L +L L+ N LT       + L+NL  + L +N+L    P        L    + G
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 242 N 242
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELP--EEMFNLK 400
           +P +  +      L ++ N +      +     T L  L+L       +L     +  L 
Sbjct: 25  LPPD--LPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLG 80

Query: 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460
            + L   S N +   +P       +LT +D S N L+     A+  L +L  L L  N+L
Sbjct: 81  TLDL---SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 461 TGPIPTDM-QDMMSLTTLDLSYNNLNGEVPSGGHFPAFD 498
              +P  +      L  L L+ NNL  E+P+G      +
Sbjct: 137 KT-LPPGLLTPTPKLEKLSLANNNLT-ELPAG----LLN 169

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 14/184 (7%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
            +  +L +  N         L    +L  L++   ++             L +L L  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 292 FSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSI 350
               +P       +LT      N+L  ++P G    L  L+ + L  N L   +P    +
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPG--L 143

Query: 351 SDSLNQLKV---AYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN 406
                +L+    A NN+  ++P  +   L NL+ L LQ N     +P+  F   ++    
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

Query: 407 VSSN 410
           +  N
Sbjct: 202 LHGN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 52/280 (18%), Positives = 101/280 (36%), Gaps = 18/280 (6%)

Query: 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNL 220
           L          +   I           + +L    +T  V    + L ++  +    +++
Sbjct: 3   LGSETITVPTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 58

Query: 221 RGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGE 280
           +      +   PN+  L + GN  T    + L   + L  L +  N+++  +   L   +
Sbjct: 59  KSV--QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK-DLS-SLKDLK 112

Query: 281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLL 340
           +LKSL L  N  S      L     L       N++  T    +  L  L  + L+ N +
Sbjct: 113 KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 168

Query: 341 SGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLK 400
           S +I   L+    L  L ++ N+I+  +   +  L NL+VL L +     +      NL 
Sbjct: 169 S-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI 440
           V + +  +  ++      S  G      V +     + E+
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 41/235 (17%), Positives = 96/235 (40%), Gaps = 16/235 (6%)

Query: 250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF 309
            +     + +  ++    +   + ++      +  +I   +       + +    ++TK 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK--SVQGIQYLPNVTKL 73

Query: 310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP 369
               N+L    P  + NL  L  + LD N +  ++  +L     L  L + +N I+  I 
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN 128

Query: 370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV 429
             + +L  L  L L NN+        +  L  +  +++  N IS +I   ++G   L  +
Sbjct: 129 G-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 430 DFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
             S+N +S ++ +A++ L++L +L L   +          +++   T+  +  +L
Sbjct: 184 YLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 22/257 (8%)

Query: 16  LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYF 75
               N+      D         +  ++ + A N++      ++   L N+  L   GN  
Sbjct: 26  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKL 80

Query: 76  SGEIP-ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
           +   P  +   +  L +L  N +         L  LK L+ + +   +     I      
Sbjct: 81  TDIKPLANLKNLGWL-FLDENKV----KDLSSLKDLKKLKSLSLE--HNGISDING-LVH 132

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L +L  L + +  I+ +I   LS+L  LD L L+ N+++  I P L+GL  L  L LS N
Sbjct: 133 LPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
            ++     + + LKNL +++LF         +   +        V   + +   PE +  
Sbjct: 189 HIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN--TVKNTDGSLVTPEIISD 244

Query: 255 NRKLLLLDVSSNQIEGK 271
           +      +V  +  E  
Sbjct: 245 DGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 52/223 (23%), Positives = 78/223 (34%), Gaps = 39/223 (17%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           ++  L ++GN   D  P   +  +  L  L    N       ++   LK LK LS   N 
Sbjct: 69  NVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHN- 122

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                      I  +                 L  L  L  +Y+G  N     I      
Sbjct: 123 ----------GISDIN---------------GLVHLPQLESLYLG--NNKITDITV-LSR 154

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L+KL  L +    IS +I   L+ L  L  L+L  N ++  +   L+GL +L  L+L   
Sbjct: 155 LTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQ 210

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFP-SFVGDYPNLEV 236
               +     S L   + V+    +L  P   S  GDY    V
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 12/197 (6%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +L  L +  N  +D      +  + +L+ L   +N  +    +    L  L+ L  G N 
Sbjct: 91  NLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNK 145

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
            +       S +  L+ L L    +  +  V L+ L  L+ +Y+     +   +      
Sbjct: 146 ITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLS--KNHISDLRA-LAG 198

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
           L  L VL++ S     +     S L + + +      L         G      +   L 
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 258

Query: 195 CLTGEVPESFSALKNLS 211
             T EV   F     + 
Sbjct: 259 EFTNEVSFIFYQPVTIG 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 49/261 (18%), Positives = 91/261 (34%), Gaps = 26/261 (9%)

Query: 261 LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI 320
                +++  +IP DL +      L  +                 L K    +N +   I
Sbjct: 14  FLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 321 PAGIF-NLPLLKMIELDHN----LLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI-GN 374
            A +F NLP L  I ++       ++ E  +NL    +L  L ++   I   +P     +
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP---NLQYLLISNTGIK-HLPDVHKIH 126

Query: 375 LTNLNVLSLQNNRFNGELPEEMF-----NLKVISLINVSSNNISGEIPTSISGCISLTTV 429
                +L +Q+N     +    F        ++ L   + N I  EI  S      L  +
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL---NKNGIQ-EIHNSAFNGTQLDEL 182

Query: 430 DFSRNSLSGEIPK-AISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEV 488
           + S N+   E+P           IL++SR ++       ++++  L            ++
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KL 239

Query: 489 PSGGHFPAFDEASFAGNPNLC 509
           P+     A  EAS     + C
Sbjct: 240 PTLEKLVALMEASLTYPSHCC 260

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 12/228 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSF-GG 72
           +   L       +         G  +LE ++   N+    +  ++  +L  L  +     
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 73  NYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE- 131
           N      PE++  + +L+YL ++  G+     V          + I   N     I    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNS 148

Query: 132 FGTLS-KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQL 189
           F  LS +  +L +    I     ++ +  +L +      N L   +  +   G      L
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVL 237
           D+S   +          LK L     +                 L   
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL----VALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
           S        + ++ EIP  +   R+   L     +L             L  +++S N++
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 485 NGEVPSGGHFPAFDEASFAGNPNL 508
              + +           F+  P L
Sbjct: 67  LEVIEAD---------VFSNLPKL 81

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 19/192 (9%)

Query: 313 KNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKVAYNNIAGK 367
           +  L  TIP+  F NLP +  I +  ++   ++      NLS    +  +++        
Sbjct: 40  ETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIRNTRNLTY 95

Query: 368 IPPSI-GNLTNLNVLSLQNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPT-SISGC 423
           I P     L  L  L + N       P+     +  +  ++ ++ N     IP  +  G 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 424 ISLT-TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM-QDMMS-LTTLDLS 480
            + T T+    N  +  +         L  + L++N+    I  D    + S  + LD+S
Sbjct: 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 481 YNNLNGEVPSGG 492
             ++   +PS G
Sbjct: 214 QTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 15/211 (7%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNN-LRG-PFPSFVGDYPNLEVLQVWGN 242
           S   L L    L      +FS L N+S + +  +  L+     SF      +  +++   
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNT 90

Query: 243 NFTGELPENLGRN-RKLLLLDVSSNQIEGKIPRD--LCKGERLKSLILMQNLFSGPIPEE 299
                +  +  +    L  L + +  ++   P    +   +    L +  N +   IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 300 L--GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENL--SISDSLN 355
              G C      +   N    ++    FN   L  + L+ N     I ++    +    +
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386
            L V+  ++   +P     L +L  L  +N 
Sbjct: 209 LLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 20/191 (10%)

Query: 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN-LSISDSLNQLKVAY 361
           C     FR     +   IP+     P  + ++L    L   IP +  S   +++++ V+ 
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI 64

Query: 362 NNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEI 416
           +    ++      NL+ +  + ++N R    +  +       LK + +    +  +    
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI---FNTGLK-MF 120

Query: 417 P--TSISGCISLTTVDFSRNSLSGEIPK-AISQLRDLSI-LNLSRNQLTGPIPTDMQDMM 472
           P  T +        ++ + N     IP  A   L + ++ L L  N  T  +     +  
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGT 179

Query: 473 SLTTLDLSYNN 483
            L  + L+ N 
Sbjct: 180 KLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 34/220 (15%)

Query: 128 IPPE-FGTLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPE-LSGLI 184
           IP   F  L  +  + ++      ++ + S   L  +  + ++  +   +I P+ L  L 
Sbjct: 46  IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
            L  L +    L    P+                       + V       +L++  N +
Sbjct: 106 LLKFLGIFNTGLK-MFPDL----------------------TKVYSTDIFFILEITDNPY 142

Query: 245 TGELPENL--GRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL-- 300
              +P N   G   + L L + +N     +      G +L ++ L +N +   I ++   
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 301 GACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNL 339
           G     +     +  +   +P+    +L  L        L
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT-WTL 239

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 22/177 (12%)

Query: 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD--SLNQLKVAYNNIAGKIPPSI-GNL 375
            +P  +       +++L HN LS  +    + +   +L+ L +++N++   I       +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 376 TNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSI-SGCISLTTVD 430
            NL  L L +N  +  L E +F     L+V+ L    +N+I   +  +       L  + 
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL---YNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 431 FSRNSLSGEIP----KAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
            S+N +S   P    K  ++L  L +L+LS N+L     TD+Q + +     L  +N
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 343 EIPENLSISDSLNQLKVAYNNIAGKIPPSI--GNLTNLNVLSLQNNRFNGELPEEMF--- 397
            +P++  +      L +++NN++ ++        LTNL+ L L +N  N  +  E F   
Sbjct: 32  NVPQS--LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 398 -NLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL 455
            NL+ + L   SSN++   +   + S   +L  +    N +      A   +  L  L L
Sbjct: 88  PNLRYLDL---SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 456 SRNQLTGPIPTD----MQDMMSLTTLDLSYNNL 484
           S+NQ++   P +       +  L  LDLS N L
Sbjct: 144 SQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 128 IPPE--FGTLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPE-LSGL 183
           +  E     L+ L  L ++  +++  I + +   +  L  L L  N L   +     S L
Sbjct: 54  LRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDL 111

Query: 184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR----GPFPSFVGDYPNLEVLQV 239
            +L  L L  N +      +F  +  L  + L +N +               P L +L +
Sbjct: 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK-LPKLMLLDL 170

Query: 240 WGNNFTGELPENLGRNRKLLLLDVS 264
             N        +L +    +   + 
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 43/249 (17%), Positives = 68/249 (27%), Gaps = 88/249 (35%)

Query: 151 EIPASLSQLKLLDALFLQMNKLTGHIHPE--LSGLISLTQLDLSLNCLTGEVPESFSALK 208
            +P SL        L L  N L+  +  E   + L +L  L LS N L     E+F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 209 NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSNQ 267
           NL  + L  N+L                           L E      + L +L + +N 
Sbjct: 89  NLRYLDLSSNHLH-------------------------TLDEFLFSDLQALEVLLLYNNH 123

Query: 268 IEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF-N 326
           I                                                   +    F +
Sbjct: 124 IV-------------------------------------------------VVDRNAFED 134

Query: 327 LPLLKMIELDHNLLSGEIPE----NLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL--NV 380
           +  L+ + L  N +S   P     + +    L  L ++ N +       +  L     N 
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 381 LSLQNNRFN 389
           L L NN   
Sbjct: 194 LYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 106 FLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPA-SLSQLKLLD 163
             + L NL  + + + N     I  E F  +  LR LD++S ++   +     S L+ L+
Sbjct: 59  TPTRLTNLHSLLLSH-NHLNF-ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALE 115

Query: 164 ALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPE----SFSALKNLSLVQLFKN 218
            L L  N +   +       +  L +L LS N ++   P       + L  L L+ L  N
Sbjct: 116 VLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

Query: 219 NLRGPFPSFVGDYPNLEVLQVWGNN 243
            L+    + +   P      ++ +N
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 34/186 (18%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEI-VSLKNLKHLSFGGN 73
              +L++S N             +T L  L   +N+    +  E  V + NL++L    N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSN 98

Query: 74  YFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-F 132
                       + +L+    +              L+ L  + + Y N     +    F
Sbjct: 99  -----------HLHTLDEFLFSD-------------LQALEVLLL-YNNHIVV-VDRNAF 132

Query: 133 GTLSKLRVLDMASCNISGEIPA----SLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ 188
             +++L+ L ++   IS   P       ++L  L  L L  NKL      +L  L +  +
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 189 LDLSLN 194
             L L+
Sbjct: 192 NGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 415 EIPTSISGCISLTTVDFSRNSLSGEIPK--AISQLRDLSILNLSRNQLTGPIPTDM-QDM 471
            +P S+        +D S N+LS  +      ++L +L  L LS N L   I ++    +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPV 87

Query: 472 MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
            +L  LDLS N+L+            DE  F+    L
Sbjct: 88  PNLRYLDLSSNHLH----------TLDEFLFSDLQAL 114

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 56/328 (17%), Positives = 102/328 (31%), Gaps = 67/328 (20%)

Query: 185 SLTQLDLSLNCLTGE----VPESFSALKNLSLVQLFKNNLRGP-----FPSFVGDYPNLE 235
           S+    L L+ +T E    V        ++  + L  N + G          +    +LE
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLE 63

Query: 236 VLQVWGNNFTGE-----------LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG----E 280
           + + + + FTG            L + L +  KL  + +S N         L        
Sbjct: 64  IAE-FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 281 RLKSLILMQNLFSGPIPEELGA---CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDH 337
            L+ L L  N                 +L +    K   N          P L+ I    
Sbjct: 123 PLEHLYLHNNGLG-----PQAGAKIARALQELAVNKKAKNA---------PPLRSIICGR 168

Query: 338 NLLSGE----IPENLSISDSLNQLKVAYNNI-----AGKIPPSIGNLTNLNVLSLQNNRF 388
           N L         +       L+ +K+  N I        +   +     L VL LQ+N F
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 389 NGE----LPEEMFNLKVISLINVSSNNISGE----IPTSISGC--ISLTTVDFSRNSLSG 438
                  L   + +   +  + ++   +S      +  + S    I L T+    N +  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 439 EIPKAISQ-----LRDLSILNLSRNQLT 461
           +  + +       + DL  L L+ N+ +
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 43/298 (14%), Positives = 88/298 (29%), Gaps = 58/298 (19%)

Query: 234 LEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQI--EG--KIPRDLCKGERLKSL 285
           +E   +  +  T E    +   L  +  +  + +S N I  E    +  ++   + L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 286 ILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE-- 343
                       E   A   L +               +   P L  + L  N       
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 344 --IPENLSISDSLNQLKVAYNNI-------------AGKIPPSIGNLTNLNVLSLQNNRF 388
             + + LS    L  L +  N +                +     N   L  +    NR 
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 389 NGE----LPEEMFNLKVISLINVSSNNISGE-----IPTSISGCISLTTVDFSRNSLSGE 439
                    +   + +++  + +  N I  E     +   ++ C  L  +D   N+ +  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 440 ----IPKAISQLRDLSILNLSRNQLTGP----IPTDMQDM--MSLTTLDLSYNNLNGE 487
               +  A+    +L  L L+   L+      +      +  + L TL L YN +  +
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 58/323 (17%), Positives = 97/323 (30%), Gaps = 83/323 (25%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVG-----MTELEVLDAFNNNFTGPLPVEIVS-------- 61
           S+K + +SGN           +        +LE+ + F++ FTG +  EI          
Sbjct: 33  SVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAE-FSDIFTGRVKDEIPEALRLLLQA 89

Query: 62  ---LKNLKHLSFGGNYFS-------GEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLK 111
                 L  +    N F         +    ++ ++ L YL  NG+G    A +  +L +
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL-YLHNNGLGPQAGAKIARALQE 148

Query: 112 NLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE----IPASLSQLKLLDALFL 167
                              +      LR +      +          +    +LL  + +
Sbjct: 149 LAVN--------------KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 168 QMNKLTGH-----IHPELSGLISLTQLDLSLNCLTGEVPESFS-ALKNLSLVQLFKNNLR 221
             N +        +   L+    L  LDL  N  T     + + ALK+            
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW----------- 243

Query: 222 GPFPSFVGDYPNLEVLQVWGNNFTGE----LPENL--GRNRKLLLLDVSSNQIEGKIPRD 275
                     PNL  L +     +      + +      N  L  L +  N+IE    R 
Sbjct: 244 ----------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 276 LC-----KGERLKSLILMQNLFS 293
           L      K   L  L L  N FS
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 22/180 (12%)

Query: 314 NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV---AYNNIAGKIP 369
           N+L+ ++P+  F  L  L+++ L+ N L   +P    I   L  L+      N +   +P
Sbjct: 47  NKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG--IFKELKNLETLWVTDNKLQ-ALP 101

Query: 370 PSI-GNLTNLNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSI-SGC 423
             +   L NL  L L  N+    LP  +F     L  +SL     N +   +P  +    
Sbjct: 102 IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL---GYNELQ-SLPKGVFDKL 156

Query: 424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYN 482
            SL  +    N L      A  +L +L  L L  NQL   +P    D +  L  L L  N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 21/162 (12%)

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF----N 398
           IP N  I     +L +  N ++  +P      LT L +L L +N+    LP  +F    N
Sbjct: 31  IPSN--IPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 399 LKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
           L+ + +   + N +   +P  +    ++L  +   RN L    P+    L  L+ L+L  
Sbjct: 87  LETLWV---TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 458 NQLTGPIPTDMQD-MMSLTTLDLSYNNLNGEVPSGGHFPAFD 498
           N+L   +P  + D + SL  L L  N L   VP G    AFD
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEG----AFD 178

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 53/188 (28%), Positives = 73/188 (38%), Gaps = 23/188 (12%)

Query: 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTN 377
            IP+ I      K ++L  N LS    +       L  L +  N +   +P  I   L N
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 378 LNVLSLQNNRFNGELPEEMF----NLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFS 432
           L  L + +N+    LP  +F    NL  + L     N +   +P  +      LT +   
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRL---DRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 433 RNSLSGEIPK-AISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYNNLNGEVPS 490
            N L   +PK    +L  L  L L  NQL   +P    D +  L TL L  N L   VP 
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPE 198

Query: 491 GGHFPAFD 498
           G    AFD
Sbjct: 199 G----AFD 202

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 7/183 (3%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPES-YSEIQSLEYLGLNGI 97
            + + LD  +N  +         L  L+ L    N     +P   + E+++LE L +   
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASL 156
            L          L NL E+ +   N     +PP  F +L+KL  L +    +   +P  +
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDR-NQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 157 -SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL 215
             +L  L  L L  N+L          L  L  L L  N L      +F +L+ L ++QL
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 216 FKN 218
            +N
Sbjct: 213 QEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 128 IPPE-FGTLSKLRVLDMASCNISGEIPA-SLSQLKLLDALFLQMNKLTGHIHPEL-SGLI 184
           IPP  F    KLR +D+++  IS E+   +   L+ L++L L  NK+T  +   L  GL 
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF 104

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
           SL  L L+ N +     ++F  L NL+L+ L+ N L+            ++ + +  N F
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 343 EIPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF---- 397
           EIP N  + +++ ++++  N I   IPP        L  + L NN+ + EL  + F    
Sbjct: 25  EIPTN--LPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 398 NLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPK-AISQLRDLSILNL 455
           +L  + L     N I+ E+P S+  G  SL  +  + N ++  +   A   L +L++L+L
Sbjct: 81  SLNSLVL---YGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135

Query: 456 SRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
             N+L          + ++ T+ L   N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 405 INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI 464
           I +  N I    P + S    L  +D S N +S   P A   LR L+ L L  N++T  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-L 95

Query: 465 PTDM-QDMMSLTTLDLSYNNLNGEVPSGGHFPAFD 498
           P  + + + SL  L L+ N +N  +       AF 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVD----AFQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 36/160 (22%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR----GPFPSFVGDYPNLEVLQVW 240
           ++T++ L  N +    P +FS  K L  + L  N +       F        +L  L ++
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----SLNSLVLY 88

Query: 241 GNNFTGELPENLGRN-RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
           GN  T ELP++L      L LL +++N+I   +  D    + L                 
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA--FQDLH---------------- 128

Query: 300 LGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHN 338
                +L       N+L  TI  G F  L  ++ + L  N
Sbjct: 129 -----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 8e-08
 Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 24/118 (20%)

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427
               +    NL  L ++N +    L                             G   L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDL-----------------------RGLGELR 59

Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
            +   ++ L    P A      LS LNLS N L   +       +SL  L LS N L+
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 151 EIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALKN 209
           +    L   + L  L+++  +   H+    L GL  L  L +  + L    P++F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 210 LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
           LS + L  N L            +L+ L + GN   
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFNGELPEE 395
               + +   +L  +++L +L +        +    +  L  L  L++  +     +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 396 MF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL 436
            F     +S +N+S N +   +       +SL  +  S N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPK-AISQLRDLSILNLSRNQLTGPIPTD 467
           + + + +    + G  +LT +          +    +  L +L  L + ++ L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 468 MQDMMSLTTLDLSYNNL 484
                 L+ L+LS+N L
Sbjct: 76  FHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 102 TAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPASLSQLK 160
            +   L   +NL E+YI     +   +       L +LR L +    +    P +     
Sbjct: 22  DSLHHLPGAENLTELYIEN-QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
            L  L L  N L   +  +    +SL +L LS N
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 35/270 (12%), Positives = 75/270 (27%), Gaps = 22/270 (8%)

Query: 236 VLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP 295
           + +     +   L E     +        S     +    + K  + K L  ++ +  G 
Sbjct: 57  IAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGX 116

Query: 296 IPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLN 355
              E   C  +        +         +     +  E+       ++   L     LN
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLN 175

Query: 356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-----NLKVISLINVSSN 410
            LK+   N             NL  L + +      + E++      NL+ + L     +
Sbjct: 176 NLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 411 NISGEIPTSISGCIS------LTTVDFSRNSLSGEIPKAISQ---LRDLSILNLSRNQLT 461
                         S      L  +          + +   +   L  L  +++S   LT
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

Query: 462 G----PIPTDMQDMMSLTTLDLSYNNLNGE 487
                 +   +  +  L  +++ YN L+ E
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 36/160 (22%)

Query: 135 LSKLRVLDMASCNISGEIP-----ASLSQLKLLDALFLQMNKLTGHIHPELSGLIS---- 185
              L+ L++ S  +   +      + L  L+ L       +            L S    
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 186 --LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN 243
             L  L +        V E F     L                     P LE + +    
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDIL---------------------PQLETMDISAGV 290

Query: 244 FTGE----LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG 279
            T E    L +++ + + L  +++  N +  ++ ++L K 
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 132 FGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPEL-SGLISLTQLD 190
           F  L +LR ++ ++  I+     +      ++ + L  N+L   +  ++  GL SL  L 
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLM 111

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNL----RGPFPSFVGDYPNLEVLQVWGNNF 244
           L  N +T    +SF  L ++ L+ L+ N +     G F +      +L  L +  N F
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL----HSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 20/150 (13%)

Query: 343 EIPENLSISDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMF--- 397
           +IPE+  I     +L++  N     +  +     L  L  ++  NN+   ++ E  F   
Sbjct: 25  KIPEH--IPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGA 80

Query: 398 -NLKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPK-AISQLRDLSILN 454
             +  I L   +SN +   +   +  G  SL T+    N ++  +   +   L  + +L+
Sbjct: 81  SGVNEILL---TSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

Query: 455 LSRNQLTGPIPTDMQD-MMSLTTLDLSYNN 483
           L  NQ+T  +     D + SL+TL+L   N
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISL 426
           IP  I        L L NN F       +F  L  +  IN S+N I+     +  G   +
Sbjct: 26  IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYNNLN 485
             +  + N L     K    L  L  L L  N++T  +  D    + S+  L L  N + 
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT 142

Query: 486 GEVPSGGHFPAFD 498
             V  G    AFD
Sbjct: 143 -TVAPG----AFD 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 305 SLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLSGEIPENLSISDSLNQLKV---A 360
            L K     N++   I  G F     +  I L  N L   +     +   L  LK     
Sbjct: 58  QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHK--MFKGLESLKTLMLR 113

Query: 361 YNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSN 410
            N I   +       L+++ +LSL +N+    +    F  L  +S +N+ +N
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 41/258 (15%)

Query: 180 LSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQV 239
             GL +  + +L    +T  V      L  +       +N++      +  + NL+ L +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70

Query: 240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEE 299
             N  + +L   L    KL  L V+ N++     ++L                       
Sbjct: 71  SHNQIS-DL-SPLKDLTKLEELSVNRNRL-----KNLNGIPSAC---------------- 107

Query: 300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV 359
                 L++     N+L       + +L  L+++ + +N L   I   L     L  L +
Sbjct: 108 ------LSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDL 157

Query: 360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS 419
             N I       +  L  +N + L   +   E  +    L +     V   +     P  
Sbjct: 158 HGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYI--TNTVKDPDGRWISPYY 213

Query: 420 ISGCISLTTVDFSRNSLS 437
           IS   S            
Sbjct: 214 ISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 21/163 (12%)

Query: 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN 385
            L       L    ++     +      +       +NI   +   +   TNL  L L +
Sbjct: 17  GLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 386 NRFNGELP--EEMFNLKVISLINVSSNNISGEIPTSISG--CISLTTVDFSRNSLSGEIP 441
           N+ + +L   +++  L+ +S+   + N +      +++G     L+ +    N L     
Sbjct: 73  NQIS-DLSPLKDLTKLEELSV---NRNRL-----KNLNGIPSACLSRLFLDNNELRD--T 121

Query: 442 KAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
            ++  L++L IL++  N+L       +  +  L  LDL  N +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 39/206 (18%), Positives = 64/206 (31%), Gaps = 41/206 (19%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           +    N+      D         ++ ++  +  N+N      ++     NLK L    N 
Sbjct: 20  NAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHN- 73

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                     +I  L                 L  L  L E+ +   N            
Sbjct: 74  ----------QISDLS---------------PLKDLTKLEELSVNR-NRLKN---LNGIP 104

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLN 194
            + L  L + +  +      SL  LK L+ L ++ NKL   I   L  L  L  LDL  N
Sbjct: 105 SACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGN 160

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNL 220
            +T       + LK ++ + L     
Sbjct: 161 EIT--NTGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 107 LSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALF 166
              L N  +  +G        +      LS ++  +  + NI   +   +     L  L 
Sbjct: 15  DPGLANAVKQNLG--KQSVTDLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELH 69

Query: 167 LQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPS 226
           L  N+++  + P L  L  L +L ++ N L      + + + +  L +LF +N       
Sbjct: 70  LSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTD 122

Query: 227 FVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIE 269
            +    NLE+L +  N     +   LG   KL +LD+  N+I 
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 73/461 (15%), Positives = 132/461 (28%), Gaps = 111/461 (24%)

Query: 25  GFQDYFPGQIVVGMTELEV-LDAFNNNF----TGPLPVEIVSLKNLKHLSFGGNYFSGEI 79
           G   Y    I      L V  DAF +NF       +P  I+S + + H+    +     +
Sbjct: 12  GEHQYQYKDI------LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD----AV 61

Query: 80  PESYSEIQSLEYLGLNGI------GLNGTAPVFLSLLKN-------LREMYIGYFNTYTG 126
             +     +L       +       L       +S +K        +  MYI   +    
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 127 GIPPEFGTLSKLRV--LDMASCNISGEIPASLSQLKLLDALFLQ-MNKLTGHIHPELSG- 182
                    +K  V  L         ++  +L +L+    + +  +    G      SG 
Sbjct: 122 DNQV----FAKYNVSRLQPYL-----KLRQALLELRPAKNVLIDGV---LG------SGK 163

Query: 183 --LISLTQLDLSLNC--------LT-GEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDY 231
             +     L   + C        L         + L+ L   Q     +   + S     
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHS 220

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLD-VSSNQIEGKIPRDL-CK---GERLKSLI 286
            N+++           L ++      LL+L  V + +       +L CK     R K + 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVT 278

Query: 287 ------LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNL-PL-LKMI-ELDH 337
                    ++        L   E  +      +     +P  +    P  L +I E   
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 338 NLLSGEIPENL----------SISDSLNQLKVA-----YNNIA-----GKIPPSIGNLTN 377
           + L+    +N            I  SLN L+ A     ++ ++       IP        
Sbjct: 339 DGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI------ 390

Query: 378 LNVLSLQNNRFNGELPEEMFN-LKVISLINVSSNNISGEIP 417
             +LSL            + N L   SL+       +  IP
Sbjct: 391 --LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 43/269 (15%), Positives = 77/269 (28%), Gaps = 96/269 (35%)

Query: 2   TFDNWSSLSKPK------MSLKVLNISGNGFQDYF------------------------- 30
           T+DNW  ++  K       SL VL      ++  F                         
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 31  ---PGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLK----NLKHL------------SFG 71
                 +V  + +  +++      T  +P   + LK    N   L            +F 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 72  GNYFSGEIPESYSEIQSLEYLG--LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP 129
            +       + Y       ++G  L  I       +F  +  + R  ++           
Sbjct: 461 SDDLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLE---------- 504

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHI---HPELSGLISL 186
                  K+R  D  + N SG I  +L QLK              +I    P+   L++ 
Sbjct: 505 ------QKIR-HDSTAWNASGSILNTLQQLK----------FYKPYICDNDPKYERLVN- 546

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQL 215
             LD           E+    K   L+++
Sbjct: 547 AILDFLPKI-----EENLICSKYTDLLRI 570

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 343 EIPENLSISDSLN-QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG-ELPEEMFNLK 400
           E  +++  +++   +L      I  K+  ++  L     L+L  N          M NL+
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLSGMENLR 73

Query: 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460
           ++SL     N I  +I    +   +L  +  S N ++  +   I +L +L +L +S N++
Sbjct: 74  ILSL---GRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKI 127

Query: 461 TGPIPTD-MQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL 508
           T     D +  +  L  L L+ N L  +         +        PNL
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 12/165 (7%)

Query: 147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSA 206
                     ++ + ++ L   +  +   +   LS L +   L LS N +  E   S S 
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIE-KMDATLSTLKACKHLALSTNNI--EKISSLSG 68

Query: 207 LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSN 266
           ++NL ++ L +N ++    +       LE L +  N     L   + +   L +L +S+N
Sbjct: 69  MENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN 125

Query: 267 QIEG-KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310
           +I        L   ++L+ L+L  N    P+  +     + +++R
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGN----PLYNDYKENNATSEYR 166

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 187 TQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYP-NLEVLQVWGNNFT 245
            +LDL    L      +F  L  L+ + L  N L+    + V D    L  L +  N   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 246 GELPENL-GRNRKLLLLDVSSNQIEGKIPRDLCKG-ERLKSLILMQNLFSGPIPEELGAC 303
             LP  +     +L  L +  NQ++  +P  +     +LK L L  N     IP   GA 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPA--GAF 151

Query: 304 ESLTKFRAM---KNQLNGTIPAGIF-NLPLLKMIELDHN 338
           + LT  + +    NQL  ++P G F  L  L+ I L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-LKVI 402
           +P    I     +L +    +A     +   LT L  L+L  N+    L   +F+ L  +
Sbjct: 29  VPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTEL 85

Query: 403 SLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
             + +++N ++  +P  +      L  +    N L         +L  L  L L+ NQL 
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 462 GPIPTDMQDMMS-LTTLDLSYNNLNGEVPSGGHFPAFD 498
             IP    D ++ L TL LS N L   VP G    AFD
Sbjct: 145 S-IPAGAFDKLTNLQTLSLSTNQLQS-VPHG----AFD 176

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 42/185 (22%), Positives = 62/185 (33%), Gaps = 35/185 (18%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
            + E LD  +             L  L  L+   N           ++Q+L         
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-----------QLQTLS-------- 75

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE-FGTLSKLRVLDMASCNISGEIPA--- 154
               A VF   L  L  + +   N     +P   F  L++L  L +   N    +P+   
Sbjct: 76  ----AGVF-DDLTELGTLGLAN-NQLAS-LPLGVFDHLTQLDKLYL-GGNQLKSLPSGVF 127

Query: 155 -SLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV 213
             L++LK L    L  N+L          L +L  L LS N L      +F  L  L  +
Sbjct: 128 DRLTKLKELR---LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 214 QLFKN 218
            LF N
Sbjct: 185 TLFGN 189

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 77/473 (16%), Positives = 146/473 (30%), Gaps = 61/473 (12%)

Query: 15  SLKVLNISGNGFQ---DYFPGQIVVGMTELEVLD--AFNNNFTGPLPVEIVS-LKNLKHL 68
           +LK L++  +       ++        T L  L+     +  +      +V+   NLK L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 69  SFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVF------LSLLKNLREMYIGYFN 122
                    ++         LE LG  G        V+      LS  K LR +  G+++
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWD 275

Query: 123 TYTGGIPPEFGTLSKLRVLDMASCNISGE-IPASLSQLKLLDALFLQMNKLTGHIHPELS 181
                +P  +   S+L  L+++   +    +   L Q   L  L++ ++ +        +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIE------DA 328

Query: 182 GLISLTQL-----DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEV 236
           GL  L        +L +      V E   AL    LV +                P LE 
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG------------CPKLES 376

Query: 237 LQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296
           +  +    T      + RNR  +                LC  E      L         
Sbjct: 377 VLYFCRQMTNAALITIARNRPNMTR------------FRLCIIEPKAPDYLTLEPLDIGF 424

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS-DSLN 355
              +  C+ L +        +            ++M+ +     S     ++    DSL 
Sbjct: 425 GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484

Query: 356 QLKVAYNNIAGK-IPPSIGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSN 410
           +L++       K +  +   L  +  L + +   +      L ++M  L V  +I+    
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV-EVIDERGA 543

Query: 411 NISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP 463
             S      +       TV   R     ++P  +  +   S +  SR  +T  
Sbjct: 544 PDSRPESCPVERVFIYRTVAGPRF----DMPGFVWNMDQDSTMRFSRQIITTN 592

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 398 NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR 457
           ++K + L N  SN    ++         L  +      L+  I   + +L  L  L LS 
Sbjct: 18  DVKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 458 NQLTGPIPTDMQDMMSLTTLDLSYNNLN 485
           N+++G +    +   +LT L+LS N + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCL 196
           K  VLD +  N  G++     + + L+ L      LT  I   L  L  L +L+LS N +
Sbjct: 20  KELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRV 76

Query: 197 TGEVPESFSALKNLSLVQLFKNNLRGP-FPSFVGDYPNLEVLQVWGN 242
           +G +        NL+ + L  N ++       +    NL+ L ++  
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 330 LKMIELD-HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF 388
           +K + LD      G++       + L  L      +   I  ++  L  L  L L +NR 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRV 76

Query: 389 NGELPEEMFNLKVISLINVSSNNISG-EIPTSISGCISLTTVDFSRN 434
           +G L         ++ +N+S N I        +    +L ++D    
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 33/141 (23%)

Query: 370 PSIGNLTNLNVLSLQNNRFN--GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT 427
               N      L L+  +      L   +     I   +     + G             
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG------------- 59

Query: 428 TVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN-- 485
                              LR L  L ++ N++        Q +  LT L L+ N+L   
Sbjct: 60  ----------------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 486 GEVPSGGHFPAFDEASFAGNP 506
           G++       +        NP
Sbjct: 104 GDLDPLASLKSLTYLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
            ++    + R LD+    I   I    + L   DA+    N++          L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTL 69

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP-SFVGDYPNLEVLQVWGNNFT 245
            ++ N +         AL +L+ + L  N+L        +    +L  L +  N  T
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468
            N  +  +P  +S    LT +D S N +S    ++ S +  L  L LS N+L   IP   
Sbjct: 40  GNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRT 97

Query: 469 QD-MMSLTTLDLSYNNLNGEVPSGGHFPAFD 498
            D + SL  L L  N+++  VP G    AF+
Sbjct: 98  FDGLKSLRLLSLHGNDIS-VVPEG----AFN 123

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 40/215 (18%)

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
                L+ +  +   + +    +   +  L  +  L L  NKL       L  L +LT L
Sbjct: 35  VTQNELNSIDQIIA-NNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYP-NLEVLQVWGNNFTGEL 248
            L+ N L       F  L NL  + L +N L+   P  V D   NL  L +  N     L
Sbjct: 91  ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SL 148

Query: 249 PENL-GRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLT 307
           P+ +  +   L  LD+S NQ              L+SL           PE  G  + LT
Sbjct: 149 PKGVFDKLTNLTELDLSYNQ--------------LQSL-----------PE--GVFDKLT 181

Query: 308 KFRAM---KNQLNGTIPAGIF-NLPLLKMIELDHN 338
           + + +   +NQL  ++P G+F  L  L+ I L  N
Sbjct: 182 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 21/184 (11%)

Query: 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL-KVAYNNIAGKIPPSIGNLTN 377
             P   F         L    ++     +    + LN + ++  NN   K    I  L N
Sbjct: 12  IFPDDAFAE--TIKANLKKKSVT-----DAVTQNELNSIDQIIANNSDIKSVQGIQYLPN 64

Query: 378 LNVLSLQNNRFNGELP--EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS 435
           +  L+L  N+ + ++   +E+ NL  + L   + N +            +L  +    N 
Sbjct: 65  VRYLALGGNKLH-DISALKELTNLTYLIL---TGNQLQSLPNGVFDKLTNLKELVLVENQ 120

Query: 436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYNNLNGEVPSGGHF 494
           L         +L +L+ LNL+ NQL   +P  + D + +LT LDLSYN L   +P G   
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEG--- 175

Query: 495 PAFD 498
             FD
Sbjct: 176 -VFD 178

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 43/199 (21%)

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV---AY 361
           S+ +  A  + +      GI  LP ++ + L  N L      ++S    L  L       
Sbjct: 42  SIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTG 94

Query: 362 NNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSI 420
           N +   +P  +   LTNL  L L  N+    LP+ +F+     L N              
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD----KLTN-------------- 134

Query: 421 SGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM-SLTTLDL 479
                LT ++ + N L         +L +L+ L+LS NQL   +P  + D +  L  L L
Sbjct: 135 -----LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188

Query: 480 SYNNLNGEVPSGGHFPAFD 498
             N L   VP G     FD
Sbjct: 189 YQNQLKS-VPDG----VFD 202

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 283 KSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELDHNLLS 341
           + L L  N  +   P    +  +L +     NQL   +P G+F+ L  L +++L  N L+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 342 GEIPENLSISDSLNQLKVAY--NNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-N 398
             +P    + D L  LK  +   N   ++P  I  LT+L  L+L  N+    +P   F  
Sbjct: 102 -VLPSA--VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDR 157

Query: 399 LKVISLINVSSN 410
           L  ++   +  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 34/167 (20%)

Query: 320 IPAGIFNLPL-LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTN 377
           +PAGI   P   +++ L  N ++   P       +L +L +  N +   +P  +  +LT 
Sbjct: 34  VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS 437
           L VL L  N+    LP  +F+     L++                   L  +    N L+
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFD----RLVH-------------------LKELFMCCNKLT 125

Query: 438 GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYNN 483
            E+P+ I +L  L+ L L +NQL   IP    D + SLT   L + N
Sbjct: 126 -ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYL-FGN 169

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 362 NNIAGKIPPSIGNLTNLNVLSLQNNRFNG-ELPEEMFNLKVISLINVSSNNISGEIPTSI 420
            +  GKI        NL  LSL N          ++  LK + L   S N I G +    
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL---SENRIFGGLDMLA 91

Query: 421 SGCISLTTVDFSRNSLS--GEIPKAISQLRDLSILNLSRNQLT 461
               +LT ++ S N L     + + + +L  L  L+L   ++T
Sbjct: 92  EKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM 468
             +  G+I    +  ++L  +      L   +   + +L  L  L LS N++ G +    
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 469 QDMMSLTTLDLSYNNLN 485
           + + +LT L+LS N L 
Sbjct: 92  EKLPNLTHLNLSGNKLK 108

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 41/258 (15%), Positives = 74/258 (28%), Gaps = 42/258 (16%)

Query: 7   SSLSKPKMSLKVLNISGNGFQ---DYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIV--S 61
             L++   SL+VLN     F          I      L  +   +      +       +
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244

Query: 62  LKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF 121
           L+     S   +    E   +    + L  LGL+ +G N   P+       +R++ + Y 
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYA 303

Query: 122 NTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELS 181
              T            L VL+  +  I       L  L                      
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNV-IGDR---GLEVL--------------------AQ 339

Query: 182 GLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWG 241
               L +L +        + +    +    L+ L +                LE + V+ 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC------------QELEYMAVYV 387

Query: 242 NNFTGELPENLGRNRKLL 259
           ++ T E  E++G   K L
Sbjct: 388 SDITNESLESIGTYLKNL 405

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 58/438 (13%), Positives = 129/438 (29%), Gaps = 64/438 (14%)

Query: 88  SLEYLGLNGIGL--NGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMA 144
            L+ +    + +       +  +   +L  + +   + +T  G+        K++ L M 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 145 SCNIS-------GEIPASLSQLKLLDALFLQMNKLTGH-IHPELSGLISLTQLDLSLNCL 196
             + S        E+    + L++L+    +  K++   +        SL  + +  +  
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFE 231

Query: 197 TGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNR 256
             E+   F A  NL                            +  +    E   NL   R
Sbjct: 232 ILELVGFFKAAANL---------------------EEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 257 KLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQ-NLFSGPIPEELGACESLTKFRAMKNQ 315
           KL  L +S       +P       +++ L L+   L +      +  C +L         
Sbjct: 271 KLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

Query: 316 LNGTIPAGIFNLPLLKMIELDH-NLLSGEIPENLSISD-----------SLNQLKVAYNN 363
            +  +         LK + ++      G   E   +S             L  + V  ++
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389

Query: 364 I----AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF---------NLKVISLINVSSN 410
           I       I   + NL +  ++ L       +LP +            L+  +   +   
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF-YLRQG 448

Query: 411 NISGEIPTSI-SGCISLTTVDFSRNSLSGEIPKAISQ-LRDLSILNLSRNQLTGP-IPTD 467
            ++    + I     ++  +       S E     S+   +L  L +     +   I   
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 468 MQDMMSLTTLDLSYNNLN 485
           +  + SL  L +     +
Sbjct: 509 VTKLPSLRYLWVQGYRAS 526

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 58/388 (14%), Positives = 106/388 (27%), Gaps = 94/388 (24%)

Query: 136 SKLRVLDMASCNISGEIPASLSQL-----KLLDALFLQMNKLTGHIHPELSGLI-----S 185
             +  LD++  N+       L Q        + +L L  N L      EL  ++     +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT 245
           +T L+LS N L+ +      +   L    L                  + VL +  N+F+
Sbjct: 82  VTSLNLSGNFLSYK------SSDELVKT-LAAIPFT------------ITVLDLGWNDFS 122

Query: 246 GELPENLGR-----NRKLLLLDVSSNQIEGKIPRDLCKG-----ERLKSLILMQNLFSGP 295
            +      +        +  L++  N +  K   +L +        + SL L  N  +  
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 296 IPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE----IPENL-SI 350
                  C  L KF A                  +  ++L  NLL  +    +     SI
Sbjct: 183 ------NCAELAKFLASIPAS-------------VTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 351 SDSLNQLKVAYNNI----AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN 406
            + +  L +  N +       +     +L +L  + L  +       E+   L       
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG------ 277

Query: 407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT 466
                       +      +  VD +   +       IS L            L      
Sbjct: 278 -----------AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 467 DMQDM----------MSLTTLDLSYNNL 484
             Q              L     +   L
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKPL 354

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD-MMSLTTLDLSYNNL 484
           L  ++  RN L+G  P A      +  L L  N++   I   M   +  L TL+L  N +
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQI 114

Query: 485 NGEVPSGGHFPAFD 498
           +  V  G    +F+
Sbjct: 115 SC-VMPG----SFE 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	549
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.82

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-61  Score=516.33  Aligned_cols=504  Identities=34%  Similarity=0.513  Sum_probs=399.7

Q ss_pred             cCCCcccEEEccCCCCCCcCChhh--hhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055           11 KPKMSLKVLNISGNGFQDYFPGQI--VVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS   88 (549)
Q Consensus        11 ~~~~~L~~L~Ls~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~   88 (549)
                      .++++|++|++++|.+.+..+...  +.++++|++|++++|.+++..+  +..+++|++|++++|.+.+..|. +.++++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~  224 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA  224 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence            566777777777777766544431  2355566666666555554322  24555555555555555544443 555555


Q ss_pred             CCEEEccCCCCccccchhccCCCCCceeecCCc---------------------cccCccCCccccCC-CCCCEEEccCc
Q 046055           89 LEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYF---------------------NTYTGGIPPEFGTL-SKLRVLDMASC  146 (549)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------~~~~~~~~~~~~~~-~~L~~L~l~~~  146 (549)
                      |++|++++|.+.+..+..++.+++|++|+++++                     +.+.+.+|..+... ++|++|++++|
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n  304 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN  304 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred             CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence            555555555555555555555555555555441                     33444455555443 67777777777


Q ss_pred             cCCccCCccccCCCCCCeEeccCccccccCCcc-ccCCCCCCEEeCCCCcCccccCccccCCC-cCceeecccccCcccC
Q 046055          147 NISGEIPASLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPF  224 (549)
Q Consensus       147 ~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~  224 (549)
                      .+++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..
T Consensus       305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred             cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence            766666666777777777777777766444433 66777777777777777666666666665 7777777777777666


Q ss_pred             CccCCC--CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccC
Q 046055          225 PSFVGD--YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGA  302 (549)
Q Consensus       225 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  302 (549)
                      +..+..  +++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..
T Consensus       385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  464 (768)
T 3rgz_A          385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY  464 (768)
T ss_dssp             CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            666655  778999999999998888999999999999999999999888999999999999999999999888999999


Q ss_pred             CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEE
Q 046055          303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS  382 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  382 (549)
                      +++|++|++.+|++.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCCccccc-----------------------------------------------------------------
Q 046055          383 LQNNRFNGELPEEMF-----------------------------------------------------------------  397 (549)
Q Consensus       383 l~~n~l~~~~~~~~~-----------------------------------------------------------------  397 (549)
                      +++|.+.+.+|..+.                                                                 
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            999998877765432                                                                 


Q ss_pred             -----cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055          398 -----NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM  472 (549)
Q Consensus       398 -----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~  472 (549)
                           .+++|+.|++++|++.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..++
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence                 356799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 046055          473 SLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTCL  517 (549)
Q Consensus       473 ~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~~~  517 (549)
                      +|++|++++|++++.+|..+.|.++...++.|||.+|+++...|.
T Consensus       705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             CCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred             CCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence            999999999999999999999999999999999999998766664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-57  Score=488.89  Aligned_cols=494  Identities=35%  Similarity=0.490  Sum_probs=405.4

Q ss_pred             cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCcc---ccCCCCcCEEEccCCcceeccCccccC
Q 046055            9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVE---IVSLKNLKHLSFGGNYFSGEIPESYSE   85 (549)
Q Consensus         9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~---l~~l~~L~~L~ls~~~~~~~~~~~~~~   85 (549)
                      .++++++|++|++++|.+.+..+..++..+++|++|++++|.+++..+..   +.++++|++|++++|.+.+..+  +..
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~  198 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR  198 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence            57889999999999999988788776568999999999999999877766   8899999999999999986554  488


Q ss_pred             CCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeE
Q 046055           86 IQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDAL  165 (549)
Q Consensus        86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  165 (549)
                      +++|++|++++|.+.+..|. ++++++|++|++++ +.+.+..|..++.+++|++|++++|.+++..+..  .+++|++|
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG-NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS-SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC-CcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            99999999999999987777 99999999999999 7787778888999999999999999887655543  66777777


Q ss_pred             eccCccccccCCccccCC-CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCcc-CCCCCCccEEEccCcc
Q 046055          166 FLQMNKLTGHIHPELSGL-ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSF-VGDYPNLEVLQVWGNN  243 (549)
Q Consensus       166 ~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~  243 (549)
                      ++++|.+.+..+..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            777777765555555543 67777777777776666666666777777777777666444433 5556666666666666


Q ss_pred             ccccCCccccC---------------------------CCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          244 FTGELPENLGR---------------------------NRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       244 ~~~~~~~~l~~---------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      +++..|..+..                           +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            55444443333                           455666777777666667777778888888888888888778


Q ss_pred             CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                      +..+..+++|+.|++.+|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|..++.++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            88888888888888888888888888888888899999999988888888888889999999999999888888888899


Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcc-------------------------------------
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS-------------------------------------  419 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------  419 (549)
                      +|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..                                     
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            9999999999988888888889999999999999887655543                                     


Q ss_pred             ---------------------------------cccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055          420 ---------------------------------ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT  466 (549)
Q Consensus       420 ---------------------------------~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  466 (549)
                                                       +..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence                                             33357889999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCC
Q 046055          467 DMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNL  508 (549)
Q Consensus       467 ~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~  508 (549)
                      .+..+++|+.||+++|++++.+|.. +.+++|+.+++++|+..
T Consensus       675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            9999999999999999999988865 78899999999999765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.5e-55  Score=462.27  Aligned_cols=505  Identities=21%  Similarity=0.190  Sum_probs=305.0

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      +++++|++++|.+.+. +...+..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..+.+|.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            4566666666665542 322233556666666666666555555555666666666666655533333455666666666


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCcccc--CCCCCCeEeccCcc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS--QLKLLDALFLQMNK  171 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~  171 (549)
                      +++|.+....+..++++++|++|++++ +.+....+..++++++|++|++++|.+++..+..+.  .+++|+.|++++|.
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCC-CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            666655555555555666666666655 444444455555555555555555555433333221  23445555554444


Q ss_pred             ccccCCc---------------------------------------------------cccCCC--CCCEEeCCCCcCcc
Q 046055          172 LTGHIHP---------------------------------------------------ELSGLI--SLTQLDLSLNCLTG  198 (549)
Q Consensus       172 l~~~~~~---------------------------------------------------~l~~l~--~L~~L~l~~~~~~~  198 (549)
                      +.+..+.                                                   .+..++  +|++|++++|.+.+
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            4433332                                                   222221  24444444444443


Q ss_pred             ccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc-----cCC----ccccCCCCccEEECcCCccc
Q 046055          199 EVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-----ELP----ENLGRNRKLLLLDVSSNQIE  269 (549)
Q Consensus       199 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~l~~~~~L~~L~l~~~~~~  269 (549)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|++|+++++...+     .+|    ..+..+++|+.|++++|.+.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            333444444444444444444443333333333333333333321110     001    12333444444444444444


Q ss_pred             ccCCccccCCCCcc----------------------------EEeccccccccCCCccccCCCCCcEEEccCCcCcccCC
Q 046055          270 GKIPRDLCKGERLK----------------------------SLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP  321 (549)
Q Consensus       270 ~~~~~~l~~~~~L~----------------------------~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  321 (549)
                      +..+..+..+++|+                            .|++++|.+....+.++..+++|+.|++++|.+.+.++
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            43333344444444                            44444444444445556666666666666666655444


Q ss_pred             -ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec--ccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055          322 -AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA--GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN  398 (549)
Q Consensus       322 -~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  398 (549)
                       ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  +..|..+..+++|+.|++++|.+++..+..+..
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence             45556666777777777666666666666777777777777665  356777888889999999999888666777888


Q ss_pred             CCCCCEEEccCCcccccCC--------cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccC
Q 046055          399 LKVISLINVSSNNISGEIP--------TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD  470 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  470 (549)
                      +++|+.|++++|++.+..+        ..+.++++|++|++++|+++...+..|..+++|+.|++++|+++...+..|..
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            8999999999998875422        23678899999999999998655667899999999999999999777777889


Q ss_pred             CCCCCeEeCCCCCCcccCCCC-C-CCCCCCccccCCCCCCCCCCC-CCCCCCc
Q 046055          471 MMSLTTLDLSYNNLNGEVPSG-G-HFPAFDEASFAGNPNLCLPRN-VTCLPSI  520 (549)
Q Consensus       471 l~~L~~L~l~~n~~~~~~p~~-~-~~~~l~~l~l~~n~~~~~~~~-~~~~~~~  520 (549)
                      +++|+.|++++|++.+..|.. + .+++|+.+++++||+.|+|+. .....|+
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~  635 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI  635 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence            999999999999999766643 2 578999999999999999987 4444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-55  Score=457.08  Aligned_cols=502  Identities=20%  Similarity=0.162  Sum_probs=428.4

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      +++++|++++|.+.+..+..+. ++++|++|++++|++.+..|..|+++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            5789999999998875555544 889999999999998877788899999999999999998877888899999999999


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCC--eEeccCcc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD--ALFLQMNK  171 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~  171 (549)
                      +++|.+....+..++++++|++|++++ +.+.......+..+++|++|++++|.+++..+..+..+++|+  .+++++|.
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            999998887778888999999999988 666654334455588999999999988877777888888888  88888998


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCc--------------------------cccCccccCCC--cCceeecccccCccc
Q 046055          172 LTGHIHPELSGLISLTQLDLSLNCLT--------------------------GEVPESFSALK--NLSLVQLFKNNLRGP  223 (549)
Q Consensus       172 l~~~~~~~l~~l~~L~~L~l~~~~~~--------------------------~~~~~~l~~l~--~L~~L~l~~~~~~~~  223 (549)
                      +.+..+..+.. .+|+++++++|...                          ...+..+.++.  +++.+++++|.+.+.
T Consensus       191 l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          191 IAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             cCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            88776666554 57888888876411                          01112222222  789999999999988


Q ss_pred             CCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC-CccccC
Q 046055          224 FPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI-PEELGA  302 (549)
Q Consensus       224 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~  302 (549)
                      .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.... +..+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            8888999999999999999998 78888999999999999999999877888999999999999999887444 456899


Q ss_pred             CCCCcEEEccCCcCcccC--CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc-ccccCCCCC
Q 046055          303 CESLTKFRAMKNQLNGTI--PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLN  379 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~  379 (549)
                      +++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            999999999999998655  67788999999999999999988888999999999999999999876554 488999999


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEEccCCccccc---CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE---IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      +|++++|.+.+..|..+..+++|+.|++++|++.+.   .+..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence            999999999988888999999999999999999752   33568899999999999999998888999999999999999


Q ss_pred             CCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055          457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI  520 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  520 (549)
                      +|++++..+..+..+++| +|++++|++.+.+|.. +.+++|+.+++++||+.|.|+......|+
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            999998999999999999 9999999999877764 66889999999999999998765444333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-54  Score=455.66  Aligned_cols=496  Identities=20%  Similarity=0.215  Sum_probs=414.8

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      +++++|++++|.+.+..+.. +.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            68899999999987754444 44889999999999988877788889999999999999988877788899999999999


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCCC----eEecc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLD----ALFLQ  168 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~  168 (549)
                      +++|.+....+..++++++|++|++++ +.+.. .+|..++++++|++|++++|.+++..+..+..+++|+    +++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCS-SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCC-CcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            999988887777888999999999988 55554 5688899999999999999988877777776665554    78999


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCc-cccCccccCCCcCceeec--------------------------------
Q 046055          169 MNKLTGHIHPELSGLISLTQLDLSLNCLT-GEVPESFSALKNLSLVQL--------------------------------  215 (549)
Q Consensus       169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l--------------------------------  215 (549)
                      +|.+....+..+... +|++|++++|.+. ...+..+..+++++.+.+                                
T Consensus       190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence            998887766666555 8999999888765 234445555555555444                                


Q ss_pred             -ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055          216 -FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                       ..+.+.+..+. +..+++|+.++++++.+. .++ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|....
T Consensus       269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             CCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCE
T ss_pred             cccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCcc
Confidence             33444444444 667899999999999997 455 7888999999999999994 666 45 89999999999995543


Q ss_pred             CCCccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cc
Q 046055          295 PIPEELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PS  371 (549)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~  371 (549)
                      ..  .+..+++|+.+++++|.+.+.  .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..
T Consensus       343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            33  577899999999999998855  37778899999999999999885 44778899999999999999997776 68


Q ss_pred             cccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc-cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055          372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG-EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL  450 (549)
Q Consensus       372 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  450 (549)
                      +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            8999999999999999998889999999999999999999987 478889999999999999999998888999999999


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCC-CCCccccCCCCCCCCCCCCCCCCCcc
Q 046055          451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFP-AFDEASFAGNPNLCLPRNVTCLPSIY  521 (549)
Q Consensus       451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~~  521 (549)
                      +.|++++|++++..|..+..+++|++|++++|++...++....++ +|+.+++++||+.|.|+......|..
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence            999999999998889999999999999999999996666666776 59999999999999998855444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-52  Score=440.69  Aligned_cols=477  Identities=17%  Similarity=0.157  Sum_probs=416.8

Q ss_pred             ccccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCC
Q 046055            8 SLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQ   87 (549)
Q Consensus         8 ~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~   87 (549)
                      ..++++++|++|++++|.+.+..|..+. ++++|++|++++|++++..|..|+++++|++|++++|.+.+..+..+.+++
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hHhccCccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            3578999999999999999886666555 999999999999999988889999999999999999999976678899999


Q ss_pred             CCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCC--EEEccCccCCccCCccccCCCCCCeE
Q 046055           88 SLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLR--VLDMASCNISGEIPASLSQLKLLDAL  165 (549)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~l~~l~~L~~L  165 (549)
                      +|++|++++|.+.......+..+++|++|++++ +.+....+..++.+++|+  +|++++|.+++..+..+.. ..|+.+
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L  207 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSL  207 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEE
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-cccccc
Confidence            999999999999885544555599999999998 777777778899999999  9999999999776666544 578888


Q ss_pred             eccCcccc--------------------------ccCCccccCCC--CCCEEeCCCCcCccccCccccCCCcCceeeccc
Q 046055          166 FLQMNKLT--------------------------GHIHPELSGLI--SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFK  217 (549)
Q Consensus       166 ~l~~~~l~--------------------------~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  217 (549)
                      ++.++...                          .+.+..+..+.  +|+.+++++|.+.+..+..|..+++|++|++++
T Consensus       208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  287 (606)
T 3t6q_A          208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA  287 (606)
T ss_dssp             ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred             ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence            88776410                          11112222222  789999999999988888899999999999999


Q ss_pred             ccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCC
Q 046055          218 NNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       218 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      |.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....
T Consensus       288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            9998 677788899999999999999997778889999999999999998875544 34888999999999999998765


Q ss_pred             --CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCc-cccCCCCCCEEEccCceecccCCcccc
Q 046055          297 --PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPE-NLSISDSLNQLKVAYNNIAGKIPPSIG  373 (549)
Q Consensus       297 --~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~  373 (549)
                        +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+.
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              66789999999999999999988888899999999999999999876554 478899999999999999988888999


Q ss_pred             cCCCCCEEEccCCcCCCC---CccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055          374 NLTNLNVLSLQNNRFNGE---LPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL  450 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  450 (549)
                      .+++|++|++++|.+.+.   .+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..|..+..+++|
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            999999999999998752   23568899999999999999998888999999999999999999999999999999999


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055          451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                       .|++++|+++...+..+..+++|+.|++++|++....+
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence             99999999998888889999999999999999986554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-51  Score=438.02  Aligned_cols=491  Identities=21%  Similarity=0.219  Sum_probs=344.0

Q ss_pred             ccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEcc
Q 046055           16 LKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLN   95 (549)
Q Consensus        16 L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~   95 (549)
                      -+.++.+++.++. +|..+.   +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus         6 ~~~~~cs~~~L~~-ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            6 HEVADCSHLKLTQ-VPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SSEEECCSSCCSS-CCSCSC---TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             CCeeECCCCCccc-cccccC---CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            3679999999876 676543   799999999999997777789999999999999999998889999999999999999


Q ss_pred             CCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcccccc
Q 046055           96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH  175 (549)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~  175 (549)
                      +|.+....+..++++++|++|++++ +.+....+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCccCccChhhhccCCCCCEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            9999987777899999999999998 677777778899999999999999999988888899999999999999998876


Q ss_pred             CCcccc--CCCCCCEEeCCCCcCccccCccccCC---------------------------Cc-----------------
Q 046055          176 IHPELS--GLISLTQLDLSLNCLTGEVPESFSAL---------------------------KN-----------------  209 (549)
Q Consensus       176 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~-----------------  209 (549)
                      .+..+.  .+++|++|++++|.+.+..+..+..+                           ++                 
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            655443  45788888888887765544433322                           23                 


Q ss_pred             ---------CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccc-----cCC--
Q 046055          210 ---------LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG-----KIP--  273 (549)
Q Consensus       210 ---------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~--  273 (549)
                               |+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.++++++...+     .+|  
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence                     4444444444444444444445555555555555544444444455555555554432221     011  


Q ss_pred             --ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc----------------------------CcccCCcc
Q 046055          274 --RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ----------------------------LNGTIPAG  323 (549)
Q Consensus       274 --~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------l~~~~~~~  323 (549)
                        ..+..+++|++|++++|.+.+..+..+..+++|+++++++|.                            +.+..+..
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~  400 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA  400 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence              134456677777777777776666666666666666665543                            22222334


Q ss_pred             CCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC--CCCccccccCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN--GELPEEMFNLK  400 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~  400 (549)
                      +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  +..|..+..++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            4445555555555555543322 34445555555555555555445555555666666666666553  34566777778


Q ss_pred             CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccch--------hhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055          401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIP--------KAISQLRDLSILNLSRNQLTGPIPTDMQDMM  472 (549)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~  472 (549)
                      +|+.|++++|++.+..+..|.++++|++|++++|.+++..+        ..+..+++|+.|++++|+++.+.+..|..++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            88888888888876666677888888888888888775322        2267778888888888888855556788888


Q ss_pred             CCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCC
Q 046055          473 SLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       473 ~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~  511 (549)
                      +|+.|++++|++.+.++.. ..+++|+.+++++|.....+
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            8888888888888655543 56788888888888655443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-52  Score=449.13  Aligned_cols=496  Identities=20%  Similarity=0.184  Sum_probs=401.1

Q ss_pred             CCccccccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCC-CccccCCCCcCEEEccCCcceeccCcc
Q 046055            4 DNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPL-PVEIVSLKNLKHLSFGGNYFSGEIPES   82 (549)
Q Consensus         4 ~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~   82 (549)
                      .+|.++-...+++++|+|++|.+.+..+..+. .+++|++|++++|.....+ |.+|+++++|++|++++|.+.+..|.+
T Consensus        14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCSSCTTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCCCCCCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            45555555668999999999999886666555 9999999999999555444 788999999999999999999888999


Q ss_pred             ccCCCCCCEEEccCCCCccccchh--ccCCCCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCccCCccccCC
Q 046055           83 YSEIQSLEYLGLNGIGLNGTAPVF--LSLLKNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGEIPASLSQL  159 (549)
Q Consensus        83 ~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l  159 (549)
                      |.++++|++|++++|.+.+..+..  ++++++|++|++++ +.+.... +..|+++++|++|++++|.+++..+..+..+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            999999999999999998766554  89999999999998 6665544 4679999999999999999988888888777


Q ss_pred             --CCCCeEeccCccccccCCccccCCCC------CCEEeCCCCcCccccCcccc--------------------------
Q 046055          160 --KLLDALFLQMNKLTGHIHPELSGLIS------LTQLDLSLNCLTGEVPESFS--------------------------  205 (549)
Q Consensus       160 --~~L~~L~l~~~~l~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~--------------------------  205 (549)
                        ++|+.|+++.|.+....+..+..+++      |++|++++|.+....+..+.                          
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              89999999999998777666665554      99999999976543332222                          


Q ss_pred             ----------C--CCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC
Q 046055          206 ----------A--LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP  273 (549)
Q Consensus       206 ----------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  273 (549)
                                +  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                      1  2567888888887777777777778888888888888877667777778888888888888876667


Q ss_pred             ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCC
Q 046055          274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS  353 (549)
Q Consensus       274 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  353 (549)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ +    ..+++|+.+++++|.+... |.   ....
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l-~~---~~~~  402 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTL-PK---INLT  402 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCC-CC---CCTT
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcccc-cc---cccc
Confidence            777778888888888888777766777778888888888887762 2    2367788888888887733 32   2467


Q ss_pred             CCEEEccCceecccCC-cccccCCCCCEEEccCCcCCCCCcc-ccccCCCCCEEEccCCccc-----ccCCcccccCCCC
Q 046055          354 LNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPE-EMFNLKVISLINVSSNNIS-----GEIPTSISGCISL  426 (549)
Q Consensus       354 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L  426 (549)
                      ++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.     +..+..|.++++|
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L  482 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL  482 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence            8888888888875322 2355789999999999999754333 4556899999999999986     3344668899999


Q ss_pred             cEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCC
Q 046055          427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNP  506 (549)
Q Consensus       427 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~  506 (549)
                      ++|+|++|.+++..+..+..+++|+.|++++|+++...+..+.  ++|+.|++++|++.+.+|..  +++|+.+++++||
T Consensus       483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np  558 (844)
T 3j0a_A          483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK  558 (844)
T ss_dssp             ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred             cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence            9999999999988888899999999999999999977766665  89999999999999888854  7799999999999


Q ss_pred             CCCCCCCC
Q 046055          507 NLCLPRNV  514 (549)
Q Consensus       507 ~~~~~~~~  514 (549)
                      +.|.|+..
T Consensus       559 ~~C~c~~~  566 (844)
T 3j0a_A          559 FICECELS  566 (844)
T ss_dssp             CCCSSSCC
T ss_pred             cccccccH
Confidence            99998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-50  Score=423.06  Aligned_cols=486  Identities=18%  Similarity=0.184  Sum_probs=418.3

Q ss_pred             cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055           15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL   94 (549)
Q Consensus        15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l   94 (549)
                      .-++++.+++.++. +|..+.   +++++|++++|++++..+..|+++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus        12 ~~~~~~c~~~~l~~-ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           12 PNITYQCMDQKLSK-VPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTTEEECTTSCCSS-CCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCceEccCCCccc-CCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            34689999999976 776554   79999999999999877889999999999999999999888899999999999999


Q ss_pred             cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCc-cCCccccCCCCCCeEeccCcccc
Q 046055           95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLT  173 (549)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~l~  173 (549)
                      ++|.+....|..++++++|++|++++ +.+....+..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCcccccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            99999998899999999999999998 77776666789999999999999999986 56889999999999999999999


Q ss_pred             ccCCccccCCCCCC----EEeCCCCcCccccCccccCCCcCceeecccccCc-ccCCccCCCCCCccEEEc---------
Q 046055          174 GHIHPELSGLISLT----QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR-GPFPSFVGDYPNLEVLQV---------  239 (549)
Q Consensus       174 ~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l---------  239 (549)
                      +..+..+..+.+|+    ++++++|.+....+..+... +|+.+++++|.+. ...+..+..++.++.+++         
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            88777777666554    89999999987666666555 8999999999875 233444455555555544         


Q ss_pred             ------------------------cCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccC
Q 046055          240 ------------------------WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP  295 (549)
Q Consensus       240 ------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  295 (549)
                                              ..+.+.+..+. +..+++|+.++++++.+.. ++ .+..+++|++|++++|.+. .
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~  321 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-Q  321 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-S
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-c
Confidence                                    44555555555 7888999999999999974 44 7888899999999999995 4


Q ss_pred             CCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcccc--CccccCCCCCCEEEccCceecccCCcccc
Q 046055          296 IPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEI--PENLSISDSLNQLKVAYNNIAGKIPPSIG  373 (549)
Q Consensus       296 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  373 (549)
                      .+ .+ .+++|+++++.+|+..+..  .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+ .+..+.
T Consensus       322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence            45 45 9999999999999665444  5668999999999999998663  6778899999999999999984 568899


Q ss_pred             cCCCCCEEEccCCcCCCCCc-cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcc-cchhhhhCCCCCC
Q 046055          374 NLTNLNVLSLQNNRFNGELP-EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG-EIPKAISQLRDLS  451 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~  451 (549)
                      .+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|+
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            99999999999999987766 678899999999999999998889999999999999999999987 4788899999999


Q ss_pred             EEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCC
Q 046055          452 ILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVT  515 (549)
Q Consensus       452 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~  515 (549)
                      .|++++|++++..+..+..+++|++|++++|++.+.+|. ...+++|+.+++++|+....|....
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~  541 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ  541 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGG
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHh
Confidence            999999999988899999999999999999999988665 4778999999999999887666533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-49  Score=413.05  Aligned_cols=496  Identities=20%  Similarity=0.221  Sum_probs=382.3

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      +++++|++++|.+.+..+..+ ..+++|++|++++|++++..+..|+++++|++|++++|.+.+..|.+|.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTT-TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHh-hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            467788888887776444433 3778888888888877766666777788888888888877766667777888888888


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC----CeEecc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL----DALFLQ  168 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~  168 (549)
                      +++|.+....+..++++++|++|++++ +.+.. .+|..++++++|++|++++|.+++..+..+..+++|    +.++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccccccCCCccccccccccEEecCC-CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            888777766555677788888888877 44544 457777778888888888887776666666666666    677787


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCcc-ccCccccCCCcCceeecccccC------cccCCccCCCCC--CccEEEc
Q 046055          169 MNKLTGHIHPELSGLISLTQLDLSLNCLTG-EVPESFSALKNLSLVQLFKNNL------RGPFPSFVGDYP--NLEVLQV  239 (549)
Q Consensus       169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~--~L~~L~l  239 (549)
                      +|.+....+..+... +|++|++++|.... ..+..+..+++++...+....+      .......+..++  .++.+++
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            777776666666555 67777777764321 2233444555555444332111      111111122222  3567777


Q ss_pred             cCc-cccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055          240 WGN-NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG  318 (549)
Q Consensus       240 ~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  318 (549)
                      .++ .+.+..+..+..+++|+.+++++|.+. .++..+..+ +|++|++++|.+... +.  ..+++|+.+++.+|.+.+
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccc
Confidence            777 666677788888999999999999988 567777777 999999999998843 32  578899999999998876


Q ss_pred             cCCccCCCCCCCCEEEeecCcCcccc--CccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCc-cc
Q 046055          319 TIPAGIFNLPLLKMIELDHNLLSGEI--PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELP-EE  395 (549)
Q Consensus       319 ~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  395 (549)
                      ..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence            5554  67899999999999988654  56678899999999999999865544 8899999999999999986655 56


Q ss_pred             cccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCc-ccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055          396 MFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS-GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL  474 (549)
Q Consensus       396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  474 (549)
                      +..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            889999999999999999888889999999999999999997 4678889999999999999999998889999999999


Q ss_pred             CeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055          475 TTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI  520 (549)
Q Consensus       475 ~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  520 (549)
                      ++|++++|++.+.+|.. ..+++|+.+++++||+.|.|+...+.+.|
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~w  543 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  543 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHH
Confidence            99999999999877753 68899999999999999999887766333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-48  Score=403.73  Aligned_cols=473  Identities=18%  Similarity=0.147  Sum_probs=395.4

Q ss_pred             cccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCC
Q 046055            9 LSKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQS   88 (549)
Q Consensus         9 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~   88 (549)
                      .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             HhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence            47889999999999999987444 44559999999999999999777789999999999999999998655557999999


Q ss_pred             CCEEEccCCCCcc-ccchhccCCCCCceeecCCccccCccCCccccCCCCC----CEEEccCccCCccCCccccCCCCCC
Q 046055           89 LEYLGLNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL----RVLDMASCNISGEIPASLSQLKLLD  163 (549)
Q Consensus        89 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~i~~~~~~~l~~l~~L~  163 (549)
                      |++|++++|.+.. ..|..++++++|++|++++ +.+....+..++.+++|    +.+++++|.+++..+..+... +|+
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~  203 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH  203 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence            9999999999887 4689999999999999998 77777777778888888    899999999998777777665 799


Q ss_pred             eEeccCccccc-cCCccccCCCCCCEEeCCCCc------CccccCccccCCCc--Cceeecccc-cCcccCCccCCCCCC
Q 046055          164 ALFLQMNKLTG-HIHPELSGLISLTQLDLSLNC------LTGEVPESFSALKN--LSLVQLFKN-NLRGPFPSFVGDYPN  233 (549)
Q Consensus       164 ~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~l~~l~~--L~~L~l~~~-~~~~~~~~~~~~~~~  233 (549)
                      .+++++|.... ..+..+..+++++..++....      +.......+.++.+  ++.+.+..+ .+.+..+..+..+++
T Consensus       204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~  283 (570)
T 2z63_A          204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN  283 (570)
T ss_dssp             EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred             eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence            99998874331 122345566677666554322      12222333444433  456666666 556677778888999


Q ss_pred             ccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccC
Q 046055          234 LEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK  313 (549)
Q Consensus       234 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  313 (549)
                      |++|++++|.+. .+|..+..+ +|+.|++++|.+. .++.  ..+++|+.|++.+|.+....+.  ..+++|++|++++
T Consensus       284 L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          284 VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            999999999998 678778888 9999999999988 4443  5778999999999988765443  7889999999999


Q ss_pred             CcCcccC--CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCC
Q 046055          314 NQLNGTI--PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       314 ~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~  390 (549)
                      |.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            9987543  56777899999999999999876655 8899999999999999987655 578899999999999999988


Q ss_pred             CCccccccCCCCCEEEccCCccc-ccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          391 ELPEEMFNLKVISLINVSSNNIS-GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                      ..|..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            88889999999999999999997 46888999999999999999999988899999999999999999999988888899


Q ss_pred             CCCCCCeEeCCCCCCcccCCCCC
Q 046055          470 DMMSLTTLDLSYNNLNGEVPSGG  492 (549)
Q Consensus       470 ~l~~L~~L~l~~n~~~~~~p~~~  492 (549)
                      .+++|+.|++++|++.+..|...
T Consensus       516 ~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          516 RLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cccCCcEEEecCCcccCCCcchH
Confidence            99999999999999998877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-47  Score=412.77  Aligned_cols=480  Identities=17%  Similarity=0.158  Sum_probs=399.7

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cCccccCCCCCCEEEcc
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IPESYSEIQSLEYLGLN   95 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~   95 (549)
                      ++.+.++++++. +|.    ..+++++|+|++|.+++..+.+|.++++|++|++++|...+. .|.+|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            578889999876 665    347999999999999988889999999999999999955434 48899999999999999


Q ss_pred             CCCCccccchhccCCCCCceeecCCccccCccCCcc--ccCCCCCCEEEccCccCCccCC-ccccCCCCCCeEeccCccc
Q 046055           96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPE--FGTLSKLRVLDMASCNISGEIP-ASLSQLKLLDALFLQMNKL  172 (549)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~l  172 (549)
                      +|.+....|..++++++|++|++++ +.+.+..+..  ++++++|++|++++|.+++..+ ..+.++++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTT-CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcC-CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            9999999999999999999999999 6776655554  8999999999999999986554 5789999999999999999


Q ss_pred             cccCCccccCC--CCCCEEeCCCCcCccccCccccCCCc------CceeecccccCcccCCccCC---------------
Q 046055          173 TGHIHPELSGL--ISLTQLDLSLNCLTGEVPESFSALKN------LSLVQLFKNNLRGPFPSFVG---------------  229 (549)
Q Consensus       173 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~---------------  229 (549)
                      ....+..+..+  ++|+.|++++|.+....+..+..+.+      |+.|++++|.+....+..+.               
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            98888888777  89999999999998777766666555      99999999976543332221               


Q ss_pred             ---------------------C--CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055          230 ---------------------D--YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI  286 (549)
Q Consensus       230 ---------------------~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (549)
                                           .  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                 1  26788999999988877778888889999999999988877777888888999999


Q ss_pred             ccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecc
Q 046055          287 LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG  366 (549)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  366 (549)
                      +++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.     ..+++|+.|++++|++. 
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-  394 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-  394 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-
Confidence            999988887788888899999999999988766666788889999999999988743     23678899999999888 


Q ss_pred             cCCcccccCCCCCEEEccCCcCCCCC-ccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCc-----cc
Q 046055          367 KIPPSIGNLTNLNVLSLQNNRFNGEL-PEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLS-----GE  439 (549)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~-----~~  439 (549)
                      .+|..   ..+++.|++++|.+.+.. +..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+.     +.
T Consensus       395 ~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~  471 (844)
T 3j0a_A          395 TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL  471 (844)
T ss_dssp             CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred             ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence            44433   467899999999987432 23355899999999999999854433 4566899999999999997     33


Q ss_pred             chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCC
Q 046055          440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPR  512 (549)
Q Consensus       440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~  512 (549)
                      .+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.+.+|.. ..++|+.+++++|.....++
T Consensus       472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC-CCSCCCEEEEEEECCCCCCS
T ss_pred             chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh-hhccccEEECCCCcCCCCCh
Confidence            4566888999999999999999888889999999999999999999655544 34899999999998776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-47  Score=395.84  Aligned_cols=487  Identities=18%  Similarity=0.201  Sum_probs=400.0

Q ss_pred             CCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEE
Q 046055           13 KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYL   92 (549)
Q Consensus        13 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L   92 (549)
                      |+...+.+.+++.++. +|..++   ++|++|++++|++++..+..|.++++|++|++++|.+.+..|.+|.++++|++|
T Consensus         4 C~~~~~c~~~~~~l~~-ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS-IPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             ECTTSEEECTTSCCSS-CCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCceEECCCCcccc-ccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            3445567888888875 676554   799999999999998778899999999999999999998888899999999999


Q ss_pred             EccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCcc-CCccCCccccCCCCCCeEeccCc
Q 046055           93 GLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCN-ISGEIPASLSQLKLLDALFLQMN  170 (549)
Q Consensus        93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~  170 (549)
                      ++++|.+....+..++++++|++|++++ +.+.. ..+..++.+++|++|++++|. ++...+..+.++++|++|++++|
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCC-CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            9999999988888899999999999998 66654 456789999999999999998 44444568999999999999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccC---CccCCCCCCccEEEccCcccccc
Q 046055          171 KLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPF---PSFVGDYPNLEVLQVWGNNFTGE  247 (549)
Q Consensus       171 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~  247 (549)
                      .+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|++.+..   ......+++|+.|++++|.+++.
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE  238 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred             cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence            999888889999999999999999876443334456899999999999988632   22234578999999999988753


Q ss_pred             CC----ccccCCCCccEEECcCCcccccC------CccccCCCCccEEeccccccccCC-----CccccCCCCCcEEEcc
Q 046055          248 LP----ENLGRNRKLLLLDVSSNQIEGKI------PRDLCKGERLKSLILMQNLFSGPI-----PEELGACESLTKFRAM  312 (549)
Q Consensus       248 ~~----~~l~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~  312 (549)
                      .+    ..+..+++++.+++++|.+.+..      ...+..+++++.+.+.++.+....     ...+...++++.+++.
T Consensus       239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~  318 (549)
T 2z81_A          239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE  318 (549)
T ss_dssp             HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence            33    34466789999999999876431      123456788999999888765321     1122345789999999


Q ss_pred             CCcCcccCCccC-CCCCCCCEEEeecCcCccccC---ccccCCCCCCEEEccCceecccCC--cccccCCCCCEEEccCC
Q 046055          313 KNQLNGTIPAGI-FNLPLLKMIELDHNLLSGEIP---ENLSISDSLNQLKVAYNNIAGKIP--PSIGNLTNLNVLSLQNN  386 (549)
Q Consensus       313 ~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n  386 (549)
                      +|.+. .+|..+ ..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+++..+  ..+..+++|++|++++|
T Consensus       319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            99987 677666 479999999999999987653   336778999999999999985432  45788999999999999


Q ss_pred             cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055          387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT  466 (549)
Q Consensus       387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  466 (549)
                      .++ .+|..+..+++|+.|++++|++. .++..+  .++|++|++++|++++.    ...+++|++|++++|+++ .+|.
T Consensus       398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~  468 (549)
T 2z81_A          398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD  468 (549)
T ss_dssp             CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC
T ss_pred             CCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC
Confidence            998 78888889999999999999987 344433  26999999999999864    257899999999999999 5554


Q ss_pred             cccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCC
Q 046055          467 DMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVT  515 (549)
Q Consensus       467 ~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~  515 (549)
                       ...+++|++|++++|++.+.+|. .+.+++|+.+++++||+.|.|+...
T Consensus       469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  517 (549)
T 2z81_A          469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  517 (549)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred             -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence             46789999999999999988876 4789999999999999999987433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.2e-46  Score=385.36  Aligned_cols=465  Identities=19%  Similarity=0.165  Sum_probs=383.0

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      ++|++|++++|.+.+..+..+. .+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            6899999999999876666554 999999999999999987788999999999999999999976667799999999999


Q ss_pred             ccCCCCccc-cchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccc
Q 046055           94 LNGIGLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKL  172 (549)
Q Consensus        94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l  172 (549)
                      +++|.+... .+..++++++|++|+++++.......+..+.++++|++|++++|.+++..+..+..+++|++|++..|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            999998863 5678999999999999983334444456899999999999999999988999999999999999999988


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccc--C-ccccCCCcCceeecccccCcccC----CccCCCCCCccEEEccCcccc
Q 046055          173 TGHIHPELSGLISLTQLDLSLNCLTGEV--P-ESFSALKNLSLVQLFKNNLRGPF----PSFVGDYPNLEVLQVWGNNFT  245 (549)
Q Consensus       173 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~  245 (549)
                      .......+..+++|++|++++|.+.+..  + .....+++|+.+++.++.+.+..    +..+..+++++.+++++|.+.
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence            7554444567899999999999987542  1 22345789999999999876532    233456789999999999876


Q ss_pred             ccC------CccccCCCCccEEECcCCcccccC-----CccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCC
Q 046055          246 GEL------PENLGRNRKLLLLDVSSNQIEGKI-----PRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN  314 (549)
Q Consensus       246 ~~~------~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  314 (549)
                      +..      ...+..+++++.+++.++.+....     +......++|+.|++++|.+.......+..+++|++|++++|
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence            421      123466789999999988765321     111233578999999999987543333467999999999999


Q ss_pred             cCcccCC---ccCCCCCCCCEEEeecCcCccccC--ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC
Q 046055          315 QLNGTIP---AGIFNLPLLKMIELDHNLLSGEIP--ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN  389 (549)
Q Consensus       315 ~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  389 (549)
                      ++.+..+   ..+..+++|++|++++|.+.+..+  ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence            9987653   346788999999999999986543  45788999999999999999 67888889999999999999997


Q ss_pred             CCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          390 GELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                       .+|..+  .++|+.|++++|++.+..    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..+..+.
T Consensus       424 -~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          424 -VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             -CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             -cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence             555444  268999999999998542    57899999999999998 5555 46789999999999999988888899


Q ss_pred             CCCCCCeEeCCCCCCcccCC
Q 046055          470 DMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       470 ~l~~L~~L~l~~n~~~~~~p  489 (549)
                      .+++|+.|++++|++.+..|
T Consensus       495 ~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          495 RLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GCTTCCEEECCSSCBCCCHH
T ss_pred             cCcccCEEEecCCCccCCCc
Confidence            99999999999999987665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=379.80  Aligned_cols=457  Identities=19%  Similarity=0.238  Sum_probs=324.1

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG   96 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~   96 (549)
                      ++|+++++.+++ +|..++   ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~~-ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccc-cccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            578999999875 676554   7899999999999876667888999999999999998877788889999999999999


Q ss_pred             CCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC--CeEeccCccc-
Q 046055           97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL--DALFLQMNKL-  172 (549)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~l-  172 (549)
                      |.+.. .|..  .+++|++|++++ +.+.. ..|..++.+++|++|++++|.+++   ..+..+++|  +.|++++|.+ 
T Consensus        79 N~l~~-lp~~--~l~~L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           79 NKLVK-ISCH--PTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SCCCE-EECC--CCCCCSEEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             Cceee-cCcc--ccCCccEEeccC-CccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            88874 3433  677788888877 55554 456777777777777777777764   334555555  6777766666 


Q ss_pred             -cccCCccccCCC-CCCEEeCCCCcCcccc-CccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcc------
Q 046055          173 -TGHIHPELSGLI-SLTQLDLSLNCLTGEV-PESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNN------  243 (549)
Q Consensus       173 -~~~~~~~l~~l~-~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------  243 (549)
                       ....+..+..+. ....+++++|.+.+.. +..+..+                        ++|+.+++++|.      
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l------------------------~~L~~L~l~~n~~~~~~~  207 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV------------------------ANLELSNIKCVLEDNKCS  207 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTC------------------------SEEEECCEEECCSTTTTH
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcc------------------------cceeeccccccccccccc
Confidence             434444444332 1223344444433221 1233344                        444444444443      


Q ss_pred             -ccccCCccccCCCCccEEECcCCcccccCCccc---cCCCCccEEeccccccccCCCccc-----cCCCCCcEEEccCC
Q 046055          244 -FTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL---CKGERLKSLILMQNLFSGPIPEEL-----GACESLTKFRAMKN  314 (549)
Q Consensus       244 -~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~  314 (549)
                       +.+..+ .+..+++|+.++++++.+.+.....+   ...++|++|++++|.+.+..+..+     ..+++|+.+++.+|
T Consensus       208 ~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n  286 (520)
T 2z7x_B          208 YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD  286 (520)
T ss_dssp             HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred             eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence             332222 34555555555555555442211111   112466666666666665555555     67777777787777


Q ss_pred             cCcccCC-ccCCCC---CCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055          315 QLNGTIP-AGIFNL---PLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       315 ~l~~~~~-~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  390 (549)
                      .+  .+| ..+..+   ++|+.|++++|.+....  .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       287 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  362 (520)
T 2z7x_B          287 VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE  362 (520)
T ss_dssp             CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred             ce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence            76  344 233322   57899999999876442  12577899999999999998788888999999999999999985


Q ss_pred             --CCccccccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055          391 --ELPEEMFNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD  467 (549)
Q Consensus       391 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  467 (549)
                        .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..
T Consensus       363 l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~  439 (520)
T 2z7x_B          363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ  439 (520)
T ss_dssp             HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred             cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence              4557788999999999999999874554 578889999999999999877666554  79999999999999 67777


Q ss_pred             ccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCCC
Q 046055          468 MQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVTC  516 (549)
Q Consensus       468 l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~~  516 (549)
                      +..+++|++|++++|++....+. ...+++|+.+++++||+.|.|+..+.
T Consensus       440 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            77999999999999999955444 56789999999999999999876544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.5e-46  Score=389.71  Aligned_cols=367  Identities=22%  Similarity=0.283  Sum_probs=296.5

Q ss_pred             CCceeecCC-ccccCccCCccccCCCCCCEEEccCccCCcc-----------------CCcccc--CCCCCCeEeccCcc
Q 046055          112 NLREMYIGY-FNTYTGGIPPEFGTLSKLRVLDMASCNISGE-----------------IPASLS--QLKLLDALFLQMNK  171 (549)
Q Consensus       112 ~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~  171 (549)
                      .++.+.+.. ++.+++ +|..++++++|++|++++|.+++.                 .|..+.  ++++|++|++++|.
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence            344444433 356666 888899999999999999999875                 888888  99999999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCc-Ccc-ccCccccCC------CcCceeecccccCcccCCc--cCCCCCCccEEEccC
Q 046055          172 LTGHIHPELSGLISLTQLDLSLNC-LTG-EVPESFSAL------KNLSLVQLFKNNLRGPFPS--FVGDYPNLEVLQVWG  241 (549)
Q Consensus       172 l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~  241 (549)
                      +.+..+..+.++++|++|++++|. +++ ..|..+..+      ++|++|++++|.+. .+|.  .+..+++|++|++++
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence            888888889999999999999998 876 677766665      89999999999998 7777  788899999999999


Q ss_pred             ccccccCCccccCCCCccEEECcCCcccccCCccccCCCC-ccEEeccccccccCCCccccCCC--CCcEEEccCCcCcc
Q 046055          242 NNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER-LKSLILMQNLFSGPIPEELGACE--SLTKFRAMKNQLNG  318 (549)
Q Consensus       242 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~  318 (549)
                      |.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...+  +|+.|++++|.+.+
T Consensus       340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence            99987788 7888899999999999988 67777888888 999999999888 4555665544  88999999999888


Q ss_pred             cCCccCC-------CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccC-------CCCCEEEcc
Q 046055          319 TIPAGIF-------NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNL-------TNLNVLSLQ  384 (549)
Q Consensus       319 ~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~L~~L~l~  384 (549)
                      ..|..+.       .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+...       ++|++|+++
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence            7777777       77789999999998886655556668889999999998883333333333       288999999


Q ss_pred             CCcCCCCCccccc--cCCCCCEEEccCCcccccCCcccccCCCCcEEEC------CCCcCcccchhhhhCCCCCCEEECC
Q 046055          385 NNRFNGELPEEMF--NLKVISLINVSSNNISGEIPTSISGCISLTTVDF------SRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       385 ~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      +|.++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++|++|++      ++|.+.+.+|..+..+++|+.|+++
T Consensus       497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            99888 7777776  88899999999998886 7788888889999988      4566777788888888888888888


Q ss_pred             CCcccccCCccccCCCCCCeEeCCCCCCcccC
Q 046055          457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEV  488 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  488 (549)
                      +|+++ .+|..+.  ++|+.|++++|++....
T Consensus       575 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          575 SNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             SSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence            88885 5565554  68888888888877433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.3e-45  Score=374.36  Aligned_cols=439  Identities=16%  Similarity=0.145  Sum_probs=317.5

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      ++|++|++++|.+.+..+.. +..+++|++|++++|++++..|..|+++++|++|++++|.+. .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            79999999999998755454 449999999999999999877889999999999999999998 56655  899999999


Q ss_pred             ccCCCCcc-ccchhccCCCCCceeecCCccccCccCCccccCCCCC--CEEEccCccC--CccCCccccCCC-CCCeEec
Q 046055           94 LNGIGLNG-TAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL--RVLDMASCNI--SGEIPASLSQLK-LLDALFL  167 (549)
Q Consensus        94 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~l~~l~-~L~~L~l  167 (549)
                      +++|.+.. ..|..++++++|++|++++ +.+..   ..+..+++|  ++|++++|.+  .+..+..+..++ +...+++
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             ccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            99999987 4678999999999999998 66654   356777888  9999999998  667777776665 2335667


Q ss_pred             cCcccccc-CCccccCCCCCCEEeCCCCc-------CccccCccccCCCcCceeecccccCcccCCccCC---CCCCccE
Q 046055          168 QMNKLTGH-IHPELSGLISLTQLDLSLNC-------LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVG---DYPNLEV  236 (549)
Q Consensus       168 ~~~~l~~~-~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~  236 (549)
                      .+|.+.+. ....+..+++|+.+++++|.       +.+..+ .+..+++|+.+++.++.+.+.....+.   ..++|++
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            77766543 33457788999999999886       443333 566777778887777765532111100   1346777


Q ss_pred             EEccCccccccCCccc-----cCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055          237 LQVWGNNFTGELPENL-----GRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR  310 (549)
Q Consensus       237 L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  310 (549)
                      |++++|.+++.+|..+     ..+++|+.+++++|.+  .+| ..+...                     ....+++.|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------~~~~~L~~L~  308 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------FSNMNIKNFT  308 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------HHTCCCSEEE
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---------------------cccCceeEEE
Confidence            7777777665566655     5566666666666655  222 222221                     0002344444


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecc--cCCcccccCCCCCEEEccCCcC
Q 046055          311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG--KIPPSIGNLTNLNVLSLQNNRF  388 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l  388 (549)
                      +++|.+....  ....+++|++|++++|.+.+..|..+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence            4444443211  01356677777777777776666667777777777777777764  3445677788888888888888


Q ss_pred             CCCCccc-cccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055          389 NGELPEE-MFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD  467 (549)
Q Consensus       389 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  467 (549)
                      .+.+|.. +..+++|+.|++++|++.+..+..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..
T Consensus       387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~  463 (520)
T 2z7x_B          387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI  463 (520)
T ss_dssp             BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred             CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHH
Confidence            7645543 67788888888888888766665543  68999999999988 66766678899999999999998544445


Q ss_pred             ccCCCCCCeEeCCCCCCcccCC
Q 046055          468 MQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       468 l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      +..+++|++|++++|++.+..+
T Consensus       464 ~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          464 FDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             hccCCcccEEECcCCCCcccCC
Confidence            8888999999999999875433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7e-44  Score=376.55  Aligned_cols=497  Identities=20%  Similarity=0.188  Sum_probs=359.9

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      +++++|||++|.+++ ++...|.++++|++|+|++|++++..+.+|+++++|++|++++|.+.+..+.+|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            367888888888776 4433444778888888888888765566778888888888888887755556778888888888


Q ss_pred             ccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccCCccccCCCCC----CeEecc
Q 046055           94 LNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLL----DALFLQ  168 (549)
Q Consensus        94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~  168 (549)
                      +++|.+....+..++++++|++|++++ +.+.. ..|..++.+++|++|++++|.+++..+..+..++++    ..++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             CCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            888877776666777888888888877 44433 456677777888888888887776666655544333    356666


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCcc-ccCccccCCCcCceeec------------------------------cc
Q 046055          169 MNKLTGHIHPELSGLISLTQLDLSLNCLTG-EVPESFSALKNLSLVQL------------------------------FK  217 (549)
Q Consensus       169 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l------------------------------~~  217 (549)
                      .|.+..+.+..+.. ..++.+++.+|.... ..+..+.++..++...+                              ..
T Consensus       210 ~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          210 LNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             cCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            66666544433332 244555555543221 11112222333332222                              11


Q ss_pred             ccCc---ccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055          218 NNLR---GPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       218 ~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                      +...   ......+....+++.+.+.++.+...  ..+.....++.+++.++.+.....   ..+..++.+.+..+....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~  363 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN  363 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC
T ss_pred             hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC
Confidence            1111   01122233456677777777766532  235566788888888887764432   345778888888877654


Q ss_pred             CCCccccCCCCCcEEEccCCcCcc--cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccC-Ccc
Q 046055          295 PIPEELGACESLTKFRAMKNQLNG--TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKI-PPS  371 (549)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~  371 (549)
                      ..  ....+++++.++++.|.+..  ..+.......+|+.+++..+..... +..+..+++++.+++.++...... ...
T Consensus       364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccc
Confidence            32  34578899999999998753  3445556788999999999887744 445778899999999998876554 356


Q ss_pred             cccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccc-ccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055          372 IGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS-GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL  450 (549)
Q Consensus       372 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  450 (549)
                      +..+++++.+++++|.+....+..+..+++++.|++++|.+. ...|..|..+++|++|+|++|++++..|..|.++++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            788999999999999998888888999999999999999854 3567889999999999999999998889999999999


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCC-CCCCccccCCCCCCCCCCCCCCCCCcc
Q 046055          451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHF-PAFDEASFAGNPNLCLPRNVTCLPSIY  521 (549)
Q Consensus       451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~~  521 (549)
                      ++|++++|+++...+..+..+++|++|++++|++.+.+|.. ..+ ++|+.+++++||+.|+|+..++..|+.
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~  593 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  593 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence            99999999999888889999999999999999999888865 444 689999999999999999766555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.4e-45  Score=382.21  Aligned_cols=441  Identities=20%  Similarity=0.310  Sum_probs=293.5

Q ss_pred             cccccCC-CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCc------C------CCCccccCCCCcCEEEccCC
Q 046055            7 SSLSKPK-MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFT------G------PLPVEIVSLKNLKHLSFGGN   73 (549)
Q Consensus         7 ~~~~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~------~------~~~~~l~~l~~L~~L~ls~~   73 (549)
                      .++.... .+++.|+|+++.+.|.+|..+. .+++|++|++++|.+.      +      .+|...  +..|+ ++++++
T Consensus        73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~  148 (636)
T 4eco_A           73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT  148 (636)
T ss_dssp             TTEEECTTCCEEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH
T ss_pred             CCeEEcCCCCEEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh
Confidence            5554432 4788888888888888887766 8888888888888652      1      111111  12233 333333


Q ss_pred             cceeccCccccC-------------------CCCCCEEEcc--CCCCccccchhccCCCCCceeecCCccccCcc-----
Q 046055           74 YFSGEIPESYSE-------------------IQSLEYLGLN--GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGG-----  127 (549)
Q Consensus        74 ~~~~~~~~~~~~-------------------l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----  127 (549)
                      .+.+..|..+..                   ...++.+.+.  .|.+++ +|..++++++|++|++++ +.+.+.     
T Consensus       149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~-n~l~~~~~~~~  226 (636)
T 4eco_A          149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN-SPFVAENICEA  226 (636)
T ss_dssp             HTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-CCCCGGGBSSS
T ss_pred             hhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC-Ccccccccccc
Confidence            322222222110                   0111111111  234444 555566666666666665 444443     


Q ss_pred             ------------CCcccc--CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc-ccc-cCCccccCC------CC
Q 046055          128 ------------IPPEFG--TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK-LTG-HIHPELSGL------IS  185 (549)
Q Consensus       128 ------------~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~  185 (549)
                                  +|..++  ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ ..+..+..+      ++
T Consensus       227 ~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~  306 (636)
T 4eco_A          227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK  306 (636)
T ss_dssp             CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT
T ss_pred             ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC
Confidence                        566666  66667777776666666666666666667777776666 554 344444443      66


Q ss_pred             CCEEeCCCCcCccccCc--cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCC-ccEEE
Q 046055          186 LTQLDLSLNCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRK-LLLLD  262 (549)
Q Consensus       186 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~  262 (549)
                      |++|++++|.++ ..|.  .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|+
T Consensus       307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS  383 (636)
T ss_dssp             CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred             CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence            777777777766 5555  66667777777777777665555 5566677777777777766 56666666776 77777


Q ss_pred             CcCCcccccCCccccCCC--CccEEeccccccccCCCcccc-------CCCCCcEEEccCCcCcccCCcc-CCCCCCCCE
Q 046055          263 VSSNQIEGKIPRDLCKGE--RLKSLILMQNLFSGPIPEELG-------ACESLTKFRAMKNQLNGTIPAG-IFNLPLLKM  332 (549)
Q Consensus       263 l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~  332 (549)
                      +++|.+. .+|..+....  +|+.|++++|.+.+..+..+.       .+++|+.|++++|.+. .+|.. +..+++|++
T Consensus       384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS  461 (636)
T ss_dssp             CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred             ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence            7777766 4555554433  677777777777766666565       6678888888888887 44443 445788888


Q ss_pred             EEeecCcCccccCccccCCC-------CCCEEEccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055          333 IELDHNLLSGEIPENLSISD-------SLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNLKVIS  403 (549)
Q Consensus       333 L~l~~~~l~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (549)
                      |++++|.+....+..+....       +|++|++++|.+. .+|..+.  .+++|++|++++|.+++ +|..+..+++|+
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            88888888854444443332       8999999999988 6777665  88999999999999985 888888899999


Q ss_pred             EEEc------cCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055          404 LINV------SSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP  463 (549)
Q Consensus       404 ~L~l------~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~  463 (549)
                      .|++      ++|++.+..|..+..+++|++|++++|.++ .+|..+.  ++|+.|++++|++...
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence            9999      457777788889999999999999999995 6666554  7999999999988744

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-43  Score=375.50  Aligned_cols=457  Identities=18%  Similarity=0.243  Sum_probs=264.9

Q ss_pred             cccccC-CCcccEEEccCCCCCCcCChhhhhCCCCCcEEEc-cCCCCcCCCCccc-------------------------
Q 046055            7 SSLSKP-KMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDA-FNNNFTGPLPVEI-------------------------   59 (549)
Q Consensus         7 ~~~~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~l-------------------------   59 (549)
                      .++... -.+++.|+|+++.+.|.+|..+. .+++|++|+| ++|.+.+..+..-                         
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~  393 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD  393 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence            555433 25788888888888888887766 8888888888 7776554322110                         


Q ss_pred             --------------------------cCCCCcCEEEcc--CCcceeccCccccCCCCCCEEEccCCCCccc-cchhccCC
Q 046055           60 --------------------------VSLKNLKHLSFG--GNYFSGEIPESYSEIQSLEYLGLNGIGLNGT-APVFLSLL  110 (549)
Q Consensus        60 --------------------------~~l~~L~~L~ls--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l  110 (549)
                                                .....++.+.+.  .|.+.+ +|..+.++++|++|++++|.+.+. .+..+.  
T Consensus       394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~--  470 (876)
T 4ecn_A          394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE--  470 (876)
T ss_dssp             CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--
T ss_pred             cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc--
Confidence                                      011112222222  244443 555566666666666666655541 000000  


Q ss_pred             CCCceeecCCccccCccCCcccc--CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCcc-ccc-cCCcc-------
Q 046055          111 KNLREMYIGYFNTYTGGIPPEFG--TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK-LTG-HIHPE-------  179 (549)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~-------  179 (549)
                            ..+. +...+.+|..++  ++++|++|++++|.+.+..|..+..+++|+.|++++|+ +.+ ..|..       
T Consensus       471 ------~~s~-n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~  543 (876)
T 4ecn_A          471 ------DANS-DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD  543 (876)
T ss_dssp             ------CTTS-HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC
T ss_pred             ------cccc-ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhc
Confidence                  0000 000002444444  45555555555554444445445555555555555554 433 22221       


Q ss_pred             ccCCCCCCEEeCCCCcCccccCc--cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCC
Q 046055          180 LSGLISLTQLDLSLNCLTGEVPE--SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRK  257 (549)
Q Consensus       180 l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  257 (549)
                      +..+++|++|++++|.+. ..|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred             ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence            223335555555555555 4444  4555555555555555555 344 4455555555555555555 44545555555


Q ss_pred             -ccEEECcCCcccccCCccccCCC--CccEEeccccccccCCCc---ccc--CCCCCcEEEccCCcCcccCCccCC-CCC
Q 046055          258 -LLLLDVSSNQIEGKIPRDLCKGE--RLKSLILMQNLFSGPIPE---ELG--ACESLTKFRAMKNQLNGTIPAGIF-NLP  328 (549)
Q Consensus       258 -L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~l~~~~~~~~~-~~~  328 (549)
                       |+.|++++|.+. .+|..+...+  +|+.|++++|.+.+..+.   .+.  .+++|+.|++++|.+. .+|..+. .++
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~  697 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS  697 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC
T ss_pred             cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC
Confidence             555555555555 3444443332  255555555555443221   111  2346777777777776 4554443 677


Q ss_pred             CCCEEEeecCcCccccCccccC-------CCCCCEEEccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccC
Q 046055          329 LLKMIELDHNLLSGEIPENLSI-------SDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNL  399 (549)
Q Consensus       329 ~L~~L~l~~~~l~~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l  399 (549)
                      +|+.|++++|.+..+.+..+..       +++|++|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+..+
T Consensus       698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L  775 (876)
T 4ecn_A          698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS  775 (876)
T ss_dssp             CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence            7777777777777443333322       227888888888887 5666665  78888888888888874 67778888


Q ss_pred             CCCCEEEccC------CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCC
Q 046055          400 KVISLINVSS------NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMS  473 (549)
Q Consensus       400 ~~L~~L~l~~------n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~  473 (549)
                      ++|+.|++++      |++.+..|..+..+++|+.|+|++|.++ .+|..+.  ++|+.|++++|++....+..+.....
T Consensus       776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~  852 (876)
T 4ecn_A          776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIE  852 (876)
T ss_dssp             TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHH
T ss_pred             CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHcccccc
Confidence            8888888866      6777788888889999999999999994 6666554  68999999999987665555554444


Q ss_pred             CCeEeCCCCCCc
Q 046055          474 LTTLDLSYNNLN  485 (549)
Q Consensus       474 L~~L~l~~n~~~  485 (549)
                      +..+.+.+|+..
T Consensus       853 ~~~~~L~~n~~~  864 (876)
T 4ecn_A          853 AGMYVLLYDKTQ  864 (876)
T ss_dssp             TTCCEEECCTTS
T ss_pred             chheeecCCCcc
Confidence            555555655544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-42  Score=360.04  Aligned_cols=461  Identities=17%  Similarity=0.193  Sum_probs=282.3

Q ss_pred             cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055           15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL   94 (549)
Q Consensus        15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l   94 (549)
                      ..++++++++.+++ +|..++   +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            33555565555554 444332   45555666655555444455555555666666555555555555555555555555


Q ss_pred             cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCcc-CCccccCCCCCCeEeccCcccc
Q 046055           95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGE-IPASLSQLKLLDALFLQMNKLT  173 (549)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~l~  173 (549)
                      ++|.+.. .|..  .+++|++|+++                         +|.+++. .+..+.++++|++|++++|.+.
T Consensus       108 s~N~l~~-lp~~--~l~~L~~L~Ls-------------------------~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          108 SHNRLQN-ISCC--PMASLRHLDLS-------------------------FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TTSCCCE-ECSC--CCTTCSEEECC-------------------------SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCcCCc-cCcc--ccccCCEEECC-------------------------CCCccccCchHhhcccCcccEEecCCCccc
Confidence            5555542 2222  44455555554                         4444431 1234444444444444444443


Q ss_pred             ccCCccccCCCCC--CEEeCCCCcC--ccccCccccCCC-cCceeecccccCcccCCc-cCCCCCCccEEEccCcc----
Q 046055          174 GHIHPELSGLISL--TQLDLSLNCL--TGEVPESFSALK-NLSLVQLFKNNLRGPFPS-FVGDYPNLEVLQVWGNN----  243 (549)
Q Consensus       174 ~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~----  243 (549)
                      ..   .+..+++|  ++|++++|.+  .+..+..+..+. ..-.+++.+|.+....+. .+..+++|+.+++++|.    
T Consensus       160 ~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          160 QL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             TT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred             cC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence            21   22222333  5555555544  333343333322 011234444444332221 22345566666666653    


Q ss_pred             -ccccCCccccCCCCccEEECcCCcccccCCc---cccCCCCccEEeccccccccCCCccc-----cCCCCCcEEEccCC
Q 046055          244 -FTGELPENLGRNRKLLLLDVSSNQIEGKIPR---DLCKGERLKSLILMQNLFSGPIPEEL-----GACESLTKFRAMKN  314 (549)
Q Consensus       244 -~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~  314 (549)
                       +. .....+..+++++.+++.++.+.+....   .....++|++|++++|.+.+..+..+     ..++.|+.+++..+
T Consensus       237 ~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~  315 (562)
T 3a79_B          237 RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ  315 (562)
T ss_dssp             HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred             hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence             11 1122345556666666665554321100   01122467777777777665555444     45555555555555


Q ss_pred             cCcccCC-ccCC---CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055          315 QLNGTIP-AGIF---NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       315 ~l~~~~~-~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  390 (549)
                      .+  .+| ..+.   ..++|++|++++|.+....  ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN  391 (562)
T ss_dssp             CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred             ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence            54  233 1111   2367999999999876432  12577899999999999998888889999999999999999885


Q ss_pred             C--CccccccCCCCCEEEccCCcccccCC-cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055          391 E--LPEEMFNLKVISLINVSSNNISGEIP-TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD  467 (549)
Q Consensus       391 ~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  467 (549)
                      .  .|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence            3  34668889999999999999987344 4588899999999999999866555443  69999999999999 56666


Q ss_pred             ccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 046055          468 MQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNVTCLP  518 (549)
Q Consensus       468 l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~  518 (549)
                      +..+++|++|++++|++...++. ...+++|+.+++++||+.|.|+......
T Consensus       469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence            66999999999999999965554 5788999999999999999987654433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-42  Score=369.11  Aligned_cols=459  Identities=20%  Similarity=0.208  Sum_probs=349.3

Q ss_pred             CCCcEEEccCCCCcCCCCccccCCCCcCEEEc-cCCcceeccCccccCC-CCCCEEEc---------------cCCCCcc
Q 046055           39 TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSF-GGNYFSGEIPESYSEI-QSLEYLGL---------------NGIGLNG  101 (549)
Q Consensus        39 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-s~~~~~~~~~~~~~~l-~~L~~L~l---------------~~~~~~~  101 (549)
                      .+++.|+|+++.+.+.+|.+|+++++|++|++ ++|.+.+..+...... ..+....+               ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47888999999998888889999999999999 8887765533221111 00000000               0000000


Q ss_pred             c-----------cchhccCCCCCceeecCC-ccccCccCCccccCCCCCCEEEccCccCCc-----------------cC
Q 046055          102 T-----------APVFLSLLKNLREMYIGY-FNTYTGGIPPEFGTLSKLRVLDMASCNISG-----------------EI  152 (549)
Q Consensus       102 ~-----------~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----------------~~  152 (549)
                      .           .+........++.+.+.. .+.+.+ +|..++++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            0           000111223344444433 245555 78899999999999999999997                 37


Q ss_pred             Ccccc--CCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCc-Ccc-ccCccccCC-------CcCceeecccccCc
Q 046055          153 PASLS--QLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC-LTG-EVPESFSAL-------KNLSLVQLFKNNLR  221 (549)
Q Consensus       153 ~~~l~--~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~  221 (549)
                      |..+.  .+++|+.|++++|.+.+..|..+.++++|++|++++|. +++ ..|..+..+       ++|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88877  99999999999999888888999999999999999998 876 566655544       49999999999998


Q ss_pred             ccCCc--cCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCC-ccEEeccccccccCCCc
Q 046055          222 GPFPS--FVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER-LKSLILMQNLFSGPIPE  298 (549)
Q Consensus       222 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~  298 (549)
                       .+|.  .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             7777  7889999999999999998 777 7889999999999999998 77878888888 999999999988 5566


Q ss_pred             cccCCCC--CcEEEccCCcCcccCCccC---C--CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcc
Q 046055          299 ELGACES--LTKFRAMKNQLNGTIPAGI---F--NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS  371 (549)
Q Consensus       299 ~~~~~~~--L~~L~l~~~~l~~~~~~~~---~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  371 (549)
                      .+...+.  |+.|++++|++.+.+|...   .  .+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence            6666554  9999999999987655322   2  4458999999999998554444557899999999999998 44443


Q ss_pred             -cc-------cCCCCCEEEccCCcCCCCCccccc--cCCCCCEEEccCCcccccCCcccccCCCCcEEECCC------Cc
Q 046055          372 -IG-------NLTNLNVLSLQNNRFNGELPEEMF--NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR------NS  435 (549)
Q Consensus       372 -~~-------~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~------n~  435 (549)
                       +.       ++++|+.|++++|.++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++|+.|+|++      |.
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~  793 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR  793 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred             HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence             32       2348999999999998 7888887  89999999999999986 688888999999999976      77


Q ss_pred             CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCC-CCCCCCccccCCCCCCC
Q 046055          436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGG-HFPAFDEASFAGNPNLC  509 (549)
Q Consensus       436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~~~l~~l~l~~n~~~~  509 (549)
                      +.+.+|..+..+++|+.|++++|++. .+|..+.  ++|+.|+|++|++....+..- ....+....+.+|+..+
T Consensus       794 l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             ccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            77788889999999999999999995 6666654  689999999999875544221 11134455566665554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-41  Score=351.61  Aligned_cols=438  Identities=17%  Similarity=0.164  Sum_probs=296.8

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEE
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLG   93 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~   93 (549)
                      ++|++|++++|.+.+..+..+ ..+++|++|++++|++++..|..|..+++|++|++++|.+. .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGT-TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhh-ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            799999999999987554544 49999999999999999877899999999999999999998 56665  899999999


Q ss_pred             ccCCCCccc-cchhccCCCCCceeecCCccccCccCCccccCCCCC--CEEEccCccC--CccCCccccCCC--CCCeEe
Q 046055           94 LNGIGLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL--RVLDMASCNI--SGEIPASLSQLK--LLDALF  166 (549)
Q Consensus        94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~l~~l~--~L~~L~  166 (549)
                      +++|.+... .|..++++++|++|++++ +.+...   .+..+++|  ++|++++|.+  ++..+..+..++  .+ .++
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~  202 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV  202 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEE
T ss_pred             CCCCCccccCchHhhcccCcccEEecCC-CccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEE
Confidence            999999874 457899999999999988 655543   34445555  8899988888  666666666544  22 345


Q ss_pred             ccCccccccCC-ccccCCCCCCEEeCCCCcCcc----ccCccccCCCcCceeecccccCccc----CCccCCCCCCccEE
Q 046055          167 LQMNKLTGHIH-PELSGLISLTQLDLSLNCLTG----EVPESFSALKNLSLVQLFKNNLRGP----FPSFVGDYPNLEVL  237 (549)
Q Consensus       167 l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  237 (549)
                      ++.|.+....+ ..+..+++|+.+++++|....    .....+..+++++.+++.++.+.+.    .+... ..++|++|
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L  281 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL  281 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence            55555543222 234456667777776663110    1112344455555555554443321    00111 12355555


Q ss_pred             EccCccccccCCccc-----cCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEEEc
Q 046055          238 QVWGNNFTGELPENL-----GRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRA  311 (549)
Q Consensus       238 ~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  311 (549)
                      ++++|.+++.+|..+     ..++.|+.+++..+.+  .+| ..+..                     +....+++++++
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~---------------------~~~~~~L~~L~l  338 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS---------------------VFAEMNIKMLSI  338 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH---------------------HHHTCCCSEEEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh---------------------hhccCcceEEEc
Confidence            555555544444433     2223333333332222  111 00000                     001134666666


Q ss_pred             cCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc--CCcccccCCCCCEEEccCCcCC
Q 046055          312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK--IPPSIGNLTNLNVLSLQNNRFN  389 (549)
Q Consensus       312 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~  389 (549)
                      .+|.+....  ....+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.  .+..+..+++|++|++++|.++
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            666554211  114667788888888888877777777888888888888888752  3456788889999999999888


Q ss_pred             CCCcc-ccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055          390 GELPE-EMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM  468 (549)
Q Consensus       390 ~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  468 (549)
                      +.+|. .+..+++|+.|++++|++.+..+..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..+
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  493 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF  493 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTST
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHH
Confidence            64554 477888999999999988765555443  68999999999998 566666689999999999999995444448


Q ss_pred             cCCCCCCeEeCCCCCCcccCC
Q 046055          469 QDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       469 ~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      ..+++|+.|++++|++.+..+
T Consensus       494 ~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCTTCCCEECCSCCBCCCHH
T ss_pred             hcCCCCCEEEecCCCcCCCcc
Confidence            889999999999999886444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-39  Score=327.91  Aligned_cols=371  Identities=19%  Similarity=0.198  Sum_probs=257.8

Q ss_pred             CCCCEEEccCccCCccCCccccCCCCCCeEeccCcccc-ccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055          136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT-GHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ  214 (549)
Q Consensus       136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  214 (549)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+. .+.+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            67888888888888777778888888888888888775 34456678888888888888888777777888888888888


Q ss_pred             cccccCcccCCc--cCCCCCCccEEEccCccccccCCcc-ccCCCCccEEECcCCcccccCCccccCC--CCccEEeccc
Q 046055          215 LFKNNLRGPFPS--FVGDYPNLEVLQVWGNNFTGELPEN-LGRNRKLLLLDVSSNQIEGKIPRDLCKG--ERLKSLILMQ  289 (549)
Q Consensus       215 l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~  289 (549)
                      +++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+  ..++.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            888887753333  3677788888888888887655554 6777888888888888776666655554  5677777777


Q ss_pred             cccccCCCcc--------ccCCCCCcEEEccCCcCcccCCccCCC---CCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 046055          290 NLFSGPIPEE--------LGACESLTKFRAMKNQLNGTIPAGIFN---LPLLKMIELDHNLLSGEIPENLSISDSLNQLK  358 (549)
Q Consensus       290 ~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  358 (549)
                      |.+....+..        +..+++|++|++++|.+.+..+..+..   .++|+.+++++|...+....            
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  257 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------  257 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence            7766543322        123455666666666555444433321   24555555555543321100            


Q ss_pred             ccCceecccCCcccc--cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055          359 VAYNNIAGKIPPSIG--NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL  436 (549)
Q Consensus       359 l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i  436 (549)
                        .+.+....+..+.  ..++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus       258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence              0011111111122  235788888888888767777777888888888888888777777778888888888888888


Q ss_pred             cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCC
Q 046055          437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVT  515 (549)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~  515 (549)
                      ++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+.++.. ..+++|+.+++++||+.|.|+...
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            7766777788888888888888888777777888888888888888888655543 567788888888888888876544


Q ss_pred             CCCCc
Q 046055          516 CLPSI  520 (549)
Q Consensus       516 ~~~~~  520 (549)
                      ....|
T Consensus       416 ~l~~~  420 (455)
T 3v47_A          416 YLSRW  420 (455)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.3e-38  Score=330.09  Aligned_cols=483  Identities=20%  Similarity=0.201  Sum_probs=374.0

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG   96 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~   96 (549)
                      ++.+-++.+++. +|..+.   +++++|+|++|+|++..+.+|.++++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus        34 ~~~~c~~~~l~~-vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           34 ITYQCMELNFYK-IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             TEEECTTSCCSS-CCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCCcCc-cCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence            456777777765 676553   5899999999999977778899999999999999999977788999999999999999


Q ss_pred             CCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCc-cCCccccCCCCCCeEeccCcccccc
Q 046055           97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISG-EIPASLSQLKLLDALFLQMNKLTGH  175 (549)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~l~~~  175 (549)
                      |++....+..|+++++|++|++++ +.+....+..|+++++|++|++++|.++. ..+..+..+++|++|++++|.+...
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            999988888899999999999998 77777667779999999999999999875 3567788999999999999999988


Q ss_pred             CCccccCCCC----CCEEeCCCCcCccccCccccCCCcCceeecccccCcc-cCCccCCCCCCccEEEccC---------
Q 046055          176 IHPELSGLIS----LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWG---------  241 (549)
Q Consensus       176 ~~~~l~~l~~----L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~---------  241 (549)
                      .+..+..+.+    ...++++.|.+....+..+. ...++.+.+.++.... ..+..+..++.++...+..         
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            7777665544    44788999988865554443 3455667776664321 1111222233333332221         


Q ss_pred             ---------------------ccc---cccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCC
Q 046055          242 ---------------------NNF---TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP  297 (549)
Q Consensus       242 ---------------------~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  297 (549)
                                           +..   .......+....+++.+.+.++.+...  ..+.....++.|++.++.+.....
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc
Confidence                                 110   011222334456677777777766533  234556788889988888775543


Q ss_pred             ccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc--cCccccCCCCCCEEEccCceecccCCcccccC
Q 046055          298 EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE--IPENLSISDSLNQLKVAYNNIAGKIPPSIGNL  375 (549)
Q Consensus       298 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  375 (549)
                         ..++.++.+.+..+......  ....+++|+.+++++|.+...  .+..+....+++.+++..+.... .+..+..+
T Consensus       346 ---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l  419 (635)
T 4g8a_A          346 ---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL  419 (635)
T ss_dssp             ---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred             ---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence               34567888888888765322  344688999999999988633  44455677899999999998874 45567889


Q ss_pred             CCCCEEEccCCcCCCCCc-cccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCc-ccchhhhhCCCCCCEE
Q 046055          376 TNLNVLSLQNNRFNGELP-EEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS-GEIPKAISQLRDLSIL  453 (549)
Q Consensus       376 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L  453 (549)
                      ++|+.+++.++......+ ..+..+++++.+++++|.+....+..+..+++|+.|++++|.+. ...|..+..+++|+.|
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence            999999999987654443 56778999999999999999888889999999999999999854 4567889999999999


Q ss_pred             ECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCC
Q 046055          454 NLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       454 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      ++++|++++..|..|..+++|++|+|++|++.+..|.. ..+++|+.+++++|.....++.
T Consensus       500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            99999999899999999999999999999999777753 6789999999999998776543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.2e-38  Score=320.25  Aligned_cols=364  Identities=19%  Similarity=0.197  Sum_probs=218.5

Q ss_pred             CCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCccee-ccCccccCCCCCCEEEccCCCCccccchhccCCCCCceee
Q 046055           39 TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSG-EIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMY  117 (549)
Q Consensus        39 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  117 (549)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.+....|             
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------   96 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-------------   96 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-------------
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-------------
Confidence            455555555555554444555555555555555554432 223345555555555555554444444             


Q ss_pred             cCCccccCccCCccccCCCCCCEEEccCccCCccCCc--cccCCCCCCeEeccCccccccCCcc-ccCCCCCCEEeCCCC
Q 046055          118 IGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPA--SLSQLKLLDALFLQMNKLTGHIHPE-LSGLISLTQLDLSLN  194 (549)
Q Consensus       118 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~~  194 (549)
                                  ..|+++++|++|++++|.+++..+.  .+..+++|++|++++|.+....+.. +..+++|++|++++|
T Consensus        97 ------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           97 ------------GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ------------TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             ------------hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence                        4444445555555555544432222  2445555555555555555443333 455556666666665


Q ss_pred             cCccccCccccCC--CcCceeecccccCcccCCccC--------CCCCCccEEEccCccccccCCccccCC---CCccEE
Q 046055          195 CLTGEVPESFSAL--KNLSLVQLFKNNLRGPFPSFV--------GDYPNLEVLQVWGNNFTGELPENLGRN---RKLLLL  261 (549)
Q Consensus       195 ~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L  261 (549)
                      .+.+..+..+..+  .+++.+++++|.+.+..+..+        ..+++|++|++++|.+++..+..+...   ++++.+
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            5554444444433  455555555555543332221        133455555555555554444333222   445555


Q ss_pred             ECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCC--CCCCCCEEEeecCc
Q 046055          262 DVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF--NLPLLKMIELDHNL  339 (549)
Q Consensus       262 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~  339 (549)
                      ++++|...+.                        ..              ..+.+.+..+..+.  ..++|++|++++|.
T Consensus       245 ~l~~~~~~~~------------------------~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          245 ILSNSYNMGS------------------------SF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             ECTTCTTTSC------------------------CT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             eecccccccc------------------------cc--------------chhhhccCcccccccccccCceEEEecCcc
Confidence            5554443211                        00              00011101111111  24678888888888


Q ss_pred             CccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcc
Q 046055          340 LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS  419 (549)
Q Consensus       340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (549)
                      +.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            88777777888888888888888888777778888888888888888887667778888889999999999888777888


Q ss_pred             cccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCC
Q 046055          420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP  465 (549)
Q Consensus       420 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  465 (549)
                      +..+++|++|++++|++++..+..+..+++|+.|++++|.++...|
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888999999999999887666777888999999999998885544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.2e-37  Score=307.10  Aligned_cols=404  Identities=22%  Similarity=0.279  Sum_probs=152.9

Q ss_pred             CCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC-------------CEEEccCCCCccccc
Q 046055           38 MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL-------------EYLGLNGIGLNGTAP  104 (549)
Q Consensus        38 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~  104 (549)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..+.++.+|             ++|++++|.+++. |
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence            45666666666666 3566666666666666666666666666666665554             5666666655432 1


Q ss_pred             hhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCC
Q 046055          105 VFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLI  184 (549)
Q Consensus       105 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~  184 (549)
                      .   ..++|++|++++ +.+.+ +|..   .++|++|++++|.+++ .+..   .++|++|++++|.+.++ + .+..++
T Consensus        88 ~---~~~~L~~L~l~~-n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p-~~~~l~  153 (454)
T 1jl5_A           88 E---LPPHLESLVASC-NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P-ELQNSS  153 (454)
T ss_dssp             S---CCTTCSEEECCS-SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C-CCTTCT
T ss_pred             C---CcCCCCEEEccC-CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c-ccCCCC
Confidence            1   124555555555 33333 3321   2456666666665542 1111   14556666666655542 2 355555


Q ss_pred             CCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECc
Q 046055          185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS  264 (549)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  264 (549)
                      +|++|++++|.+.+ .|..   ..+|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|..   .++|+.|+++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            66666666555553 2221   2355555555555553 23 24455555555555555542 2221   1345555555


Q ss_pred             CCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcccc
Q 046055          265 SNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEI  344 (549)
Q Consensus       265 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~  344 (549)
                      +|.+. .+| .+..+++|+.|++++|.+.+.. .   ..++|+.|++++|++.+ +|..   .++|++|++++|.+.+..
T Consensus       224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          224 NNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred             CCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence            55554 233 2444555555555555444321 1   12445555555554442 2221   244455555554444321


Q ss_pred             CccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCC
Q 046055          345 PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI  424 (549)
Q Consensus       345 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  424 (549)
                      .    ..++|++|++++|.+.+. +.   ..++|++|++++|.+++ +|..   +++|+.|++++|.+. .+|.   .++
T Consensus       294 ~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~  357 (454)
T 1jl5_A          294 E----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ  357 (454)
T ss_dssp             C----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             C----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence            0    113444444444444421 10   01244444444444442 2222   244444444444444 2222   234


Q ss_pred             CCcEEECCCCcCcc--cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc--cCCCCCCCCCCCcc
Q 046055          425 SLTTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG--EVPSGGHFPAFDEA  500 (549)
Q Consensus       425 ~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~l~~l  500 (549)
                      +|++|++++|.+++  .+|..+      ..|.  .|...+.+|.   .+++|+.|++++|++.+  .+|     ++++.+
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L  421 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIP-----ESVEDL  421 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTC------CEEE--CCC-------------------------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHH------Hhhh--hccccccccc---ccCcCCEEECCCCcCCccccch-----hhHhhe
Confidence            44444444444443  222211      1111  1222222222   12788999999999886  333     467777


Q ss_pred             ccCCCCCCC
Q 046055          501 SFAGNPNLC  509 (549)
Q Consensus       501 ~l~~n~~~~  509 (549)
                      .+.+|...|
T Consensus       422 ~~~~~~~~~  430 (454)
T 1jl5_A          422 RMNSERVVD  430 (454)
T ss_dssp             ---------
T ss_pred             eCcCcccCC
Confidence            887776554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-36  Score=304.27  Aligned_cols=409  Identities=21%  Similarity=0.257  Sum_probs=270.8

Q ss_pred             CCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCc-------------CEEEccCCcceec
Q 046055           12 PKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNL-------------KHLSFGGNYFSGE   78 (549)
Q Consensus        12 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~ls~~~~~~~   78 (549)
                      +.++|++|+++++.+ +.+|..+. .+++|++|++++|.+.+.+|..++++++|             ++|++++|.+. .
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~   85 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred             ccccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence            357999999999999 67998876 99999999999999998899999998875             99999999987 4


Q ss_pred             cCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccC
Q 046055           79 IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQ  158 (549)
Q Consensus        79 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~  158 (549)
                      +|..   .++|++|++++|.+.+ .|.   .+++|++|++++ +.+.+ ++..   .++|++|++++|.+++ .| .+..
T Consensus        86 lp~~---~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~-n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           86 LPEL---PPHLESLVASCNSLTE-LPE---LPQSLKSLLVDN-NNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             CCSC---CTTCSEEECCSSCCSS-CCC---CCTTCCEEECCS-SCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             CCCC---cCCCCEEEccCCcCCc-ccc---ccCCCcEEECCC-CccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence            5542   3689999999999987 443   348999999998 55553 2211   2699999999999985 56 5999


Q ss_pred             CCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEE
Q 046055          159 LKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ  238 (549)
Q Consensus       159 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  238 (549)
                      +++|++|++++|.+.++ +..   .++|++|++++|.+.+ .| .+..+++|+.|++++|.+.+ +|..   .++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            99999999999999853 322   3599999999999986 45 58899999999999999885 4432   36999999


Q ss_pred             ccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055          239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG  318 (549)
Q Consensus       239 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  318 (549)
                      +++|.+. .+|. +..+++|+.|++++|++.+ ++.   .+++|+.|++++|.+.+. +.   ..++|+.+++++|++.+
T Consensus       222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSE
T ss_pred             CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCc
Confidence            9999998 6664 8899999999999999985 343   248999999999998863 22   24899999999999875


Q ss_pred             cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055          319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN  398 (549)
Q Consensus       319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  398 (549)
                       ++.   ..++|+.|++++|.+.+.. .   ..++|++|++++|.+.+ +|..   +++|++|++++|.++ .+|.   .
T Consensus       292 -l~~---~~~~L~~L~l~~N~l~~i~-~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~  355 (454)
T 1jl5_A          292 -LSE---LPPNLYYLNASSNEIRSLC-D---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L  355 (454)
T ss_dssp             -ESC---CCTTCCEEECCSSCCSEEC-C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred             -ccC---cCCcCCEEECcCCcCCccc-C---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence             222   1378999999999998532 1   23689999999999985 5543   589999999999998 5666   4


Q ss_pred             CCCCCEEEccCCcccc--cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc--cCCccccCCCCC
Q 046055          399 LKVISLINVSSNNISG--EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG--PIPTDMQDMMSL  474 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L  474 (549)
                      +++|+.|++++|++.+  ..|..+.      .|  +.|...+.+|..   +++|+.|++++|.+++  .+|      +++
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl  418 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESV  418 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------------------------------
T ss_pred             hhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhH
Confidence            7899999999999986  4554443      33  345555555543   5789999999999985  333      357


Q ss_pred             CeEeCCCCCCcccCCC
Q 046055          475 TTLDLSYNNLNGEVPS  490 (549)
Q Consensus       475 ~~L~l~~n~~~~~~p~  490 (549)
                      +.|.+.+|.+.+.++.
T Consensus       419 ~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          419 EDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ----------------
T ss_pred             hheeCcCcccCCcccc
Confidence            7788888888766553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.6e-36  Score=302.78  Aligned_cols=320  Identities=20%  Similarity=0.177  Sum_probs=209.2

Q ss_pred             CEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccc
Q 046055          139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKN  218 (549)
Q Consensus       139 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  218 (549)
                      +.++++++.++ .+|..+.  ++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56777777776 4454442  57888888888888777777888888888888888887777777888888888888888


Q ss_pred             cCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCc
Q 046055          219 NLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPE  298 (549)
Q Consensus       219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  298 (549)
                      .+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            87766666677778888888888877766667777777788888877777766666666677777777777766655555


Q ss_pred             cccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC
Q 046055          299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL  378 (549)
Q Consensus       299 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  378 (549)
                      .+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|...+..+.......+|++|++++|.+.+..+..+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            56666666666666666665555555666666666666665554444443334456666666665553333445555556


Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      ++|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            66666665555444445555555555555555555555555555555555555555555444445555555555555555


Q ss_pred             ccc
Q 046055          459 QLT  461 (549)
Q Consensus       459 ~i~  461 (549)
                      .+.
T Consensus       331 ~l~  333 (477)
T 2id5_A          331 PLA  333 (477)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.8e-35  Score=293.86  Aligned_cols=347  Identities=26%  Similarity=0.342  Sum_probs=275.9

Q ss_pred             CCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCE
Q 046055          109 LLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQ  188 (549)
Q Consensus       109 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  188 (549)
                      .+++++.|++.+ +.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+....+  +..+++|++
T Consensus        44 ~l~~l~~L~l~~-~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADR-LGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCS-SCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCC-CCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            467899999987 44433 33 47788999999999999885443  8889999999999999886543  889999999


Q ss_pred             EeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcc
Q 046055          189 LDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQI  268 (549)
Q Consensus       189 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  268 (549)
                      |++++|.+.+..+  +..+++|++|++++|.+.+. + .+..+++|++|++.+ .+.. .+ .+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcC
Confidence            9999998875433  78899999999999988753 2 477889999999964 4442 22 378889999999999988


Q ss_pred             cccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccc
Q 046055          269 EGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENL  348 (549)
Q Consensus       269 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  348 (549)
                      .+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++.+|.+.+.  ..+..+++|+.|++++|.+.+..+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            743  357788899999999998876543  67788999999999888742  356778899999999998886654  7


Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      ..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+  +..+++|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            778889999999998885433  7788899999999998874433  6788899999999998876554  678889999


Q ss_pred             EECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCccc
Q 046055          429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       429 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      |++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++.+.
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999988854  467888899999999999886655  78888899999999988863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.5e-34  Score=289.48  Aligned_cols=346  Identities=24%  Similarity=0.313  Sum_probs=282.5

Q ss_pred             CCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCe
Q 046055           85 EIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDA  164 (549)
Q Consensus        85 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  164 (549)
                      .+.+++.|++.++.+... + .+..+++|++|++++ +.+....+  +..+++|++|++++|.+++..+  +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSN-NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccC-c-chhhhcCCCEEECCC-CccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            356899999999887753 3 478899999999998 55554433  8899999999999999885443  889999999


Q ss_pred             EeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccc
Q 046055          165 LFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF  244 (549)
Q Consensus       165 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  244 (549)
                      |++++|.+....  .+..+++|++|++++|.+...  ..+..+++|+.+++.+ .+....  .+..+++|++|++++|.+
T Consensus       117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcC
Confidence            999999888653  388899999999999988743  2478889999999864 444322  377889999999999988


Q ss_pred             cccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccC
Q 046055          245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI  324 (549)
Q Consensus       245 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  324 (549)
                      .. . ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +
T Consensus       190 ~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            74 3 347888999999999999876543  67789999999999988754  467888999999999999875443  7


Q ss_pred             CCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCE
Q 046055          325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISL  404 (549)
Q Consensus       325 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (549)
                      ..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..|  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            788999999999999886654  7788999999999999885443  7789999999999999986554  678899999


Q ss_pred             EEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055          405 INVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG  462 (549)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~  462 (549)
                      |++++|++.+.  ..+..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999998754  468889999999999999987766  7888999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=293.83  Aligned_cols=350  Identities=18%  Similarity=0.147  Sum_probs=293.0

Q ss_pred             ceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCC
Q 046055          114 REMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL  193 (549)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  193 (549)
                      +.++.++ ..+. .+|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus        14 ~~v~c~~-~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHR-KRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCS-CCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCC-CCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            4555554 3333 3455443  5899999999999988788899999999999999999988888999999999999999


Q ss_pred             CcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC
Q 046055          194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP  273 (549)
Q Consensus       194 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  273 (549)
                      |.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            99987766778899999999999999998888888899999999999999987778889999999999999999987666


Q ss_pred             ccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCC
Q 046055          274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDS  353 (549)
Q Consensus       274 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  353 (549)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++.+|...+.++.......+|++|++++|.+.+..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            67888999999999999998888888999999999999999887778777777789999999999998766567888999


Q ss_pred             CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055          354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR  433 (549)
Q Consensus       354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  433 (549)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            99999999999988888899999999999999999877888999999999999999999877777888999999999999


Q ss_pred             CcCcccch-hhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          434 NSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       434 n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                      |.+...-. .++.  .....+.+.++......|..+.
T Consensus       330 N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~~~  364 (477)
T 2id5_A          330 NPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEFVQ  364 (477)
T ss_dssp             SCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGGGT
T ss_pred             CCccCccchHhHH--hhhhccccCccCceeCCchHHc
Confidence            99874322 1221  2233345556655544444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.8e-34  Score=281.39  Aligned_cols=334  Identities=17%  Similarity=0.199  Sum_probs=228.6

Q ss_pred             CCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055          135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ  214 (549)
Q Consensus       135 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  214 (549)
                      ++++++++++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46777777777777654444566677777777777777666666677777777777777776665566666666677777


Q ss_pred             cccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055          215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                      +++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.   .+..+++             
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~-------------  187 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS-------------  187 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT-------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc-------------
Confidence            776666644444455666666666666666655555556666666666666665532   2233344             


Q ss_pred             CCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccccc
Q 046055          295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN  374 (549)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  374 (549)
                                 |+.+++.+|.+.+     +...++|++|++++|.+......   ..++|++|++++|.+.+.  ..+..
T Consensus       188 -----------L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~  246 (390)
T 3o6n_A          188 -----------LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLN  246 (390)
T ss_dssp             -----------CSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred             -----------cceeecccccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcC
Confidence                       4444444444431     12234677777777776644322   246788888888887743  45778


Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN  454 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  454 (549)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|++.+ .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence            8888888888888886777888888888888888888874 4555667889999999999888 5566677889999999


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCC
Q 046055          455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~  511 (549)
                      +++|.++.. +  +..+++|+.|++++|++... .....+..+....+.+++..|.+
T Consensus       325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH-HHHHHTTTCCTTTBCCCCSCCCT
T ss_pred             CCCCcccee-C--chhhccCCEEEcCCCCccch-hHHHHHHHHHhhcccccCceecc
Confidence            999998854 2  67788899999999998753 22234566777778888888865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.9e-34  Score=285.23  Aligned_cols=353  Identities=19%  Similarity=0.202  Sum_probs=192.1

Q ss_pred             CCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCcee
Q 046055           37 GMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREM  116 (549)
Q Consensus        37 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  116 (549)
                      .+++|++|++++|.+++ +| .+..+++|++|++++|.+.+ +|  +..+++|++|++++|.+.+. +  ++.+++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            66777777777777774 34 57777777777777777764 33  66777777777777776653 2  5666666666


Q ss_pred             ecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcC
Q 046055          117 YIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCL  196 (549)
Q Consensus       117 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  196 (549)
                      ++++ +.+... +  ++.+++|++|++++|.+++.   .+..+++|++|++++|...+..  .+..+++|++|++++|.+
T Consensus       112 ~L~~-N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          112 NCDT-NKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             ECCS-SCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred             ECCC-CcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence            6666 444432 2  55666666666666666542   2555566666666665322221  345555566666665555


Q ss_pred             ccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccc
Q 046055          197 TGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL  276 (549)
Q Consensus       197 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  276 (549)
                      ++. +  +..+++|+.|++++|.+.+.   .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+.       
T Consensus       183 ~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-------  246 (457)
T 3bz5_A          183 TEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-------  246 (457)
T ss_dssp             CCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-------
T ss_pred             cee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-------
Confidence            532 2  44455555555555554432   13344455555555554443 22  344444444444444444       


Q ss_pred             cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055          277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ  356 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  356 (549)
                                       +..   +..+++|+.+++.++              +|+.+++++|...+..|  +..+++|+.
T Consensus       247 -----------------~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~  290 (457)
T 3bz5_A          247 -----------------ELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE  290 (457)
T ss_dssp             -----------------CCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred             -----------------CcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence                             321   223344444443332              23344444444333332  234455555


Q ss_pred             EEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055          357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL  436 (549)
Q Consensus       357 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i  436 (549)
                      |++++|...+.+|.   ..++|+.|++++|             ++|+.|++++|++.+.   .+..+++|+.|++++|++
T Consensus       291 L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          291 LDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred             EECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCC
Confidence            55555554433332   2234444443333             4566666666666643   256666677777777766


Q ss_pred             cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC
Q 046055          437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS  490 (549)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  490 (549)
                      ++        ++.|+.|++++|.+.+.     ..+..|..+++++|++++.+|.
T Consensus       352 ~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          352 QD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             CC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            63        13455556666666533     2334566677777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-33  Score=281.62  Aligned_cols=315  Identities=19%  Similarity=0.162  Sum_probs=233.0

Q ss_pred             ccCCCcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCC
Q 046055           10 SKPKMSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSL   89 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L   89 (549)
                      ++++++|++|++++|.+.+ +| .+. .+++|++|++++|.+++ ++  ++.+++|++|++++|.+.+. +  +.++++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITD-MT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCC-CT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             hhHcCCCCEEEccCCCccc-Ch-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            5568999999999999987 45 444 89999999999999996 44  89999999999999999853 4  8899999


Q ss_pred             CEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccC
Q 046055           90 EYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQM  169 (549)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  169 (549)
                      ++|++++|.+... +  ++.+++|++|++++ +.+.+.   .++.+++|++|++++|...+..  .+..+++|+.|++++
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~-N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCAR-NTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTT-SCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCC-Ccccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            9999999999874 3  88999999999998 666653   3889999999999999544344  478899999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC
Q 046055          170 NKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP  249 (549)
Q Consensus       170 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  249 (549)
                      |.+.+..   +..+++|++|++++|.+++.   .+..+++|+.|++++|++.+ +|  +..+++|++|++++|.+++.. 
T Consensus       180 n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          180 NKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-  249 (457)
T ss_dssp             SCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred             Cccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence            9998652   88899999999999999864   47889999999999999986 44  778999999999999998543 


Q ss_pred             ccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCC
Q 046055          250 ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPL  329 (549)
Q Consensus       250 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  329 (549)
                        ...+++|+.++++.+.              |+.+++++|.+.+..+  +..+++|+.|++++|...+.+|.   ..++
T Consensus       250 --~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~  308 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG  308 (457)
T ss_dssp             --CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred             --HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence              4567888888877653              3445555555432222  34455555555555554433332   2233


Q ss_pred             CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCC
Q 046055          330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFN  389 (549)
Q Consensus       330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  389 (549)
                      |+.+++++             +++|++|++++|++++. +  ++.+++|+.|++++|+++
T Consensus       309 L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          309 ITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             CSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred             ceEechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence            33333222             23455555555555532 1  444555555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=279.07  Aligned_cols=313  Identities=17%  Similarity=0.144  Sum_probs=222.8

Q ss_pred             CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEc
Q 046055          160 KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQV  239 (549)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  239 (549)
                      ++++.+++.++.+..+.+..+..+++|++|++++|.+....+..+..++                        +|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------------------------~L~~L~L  100 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------------------------TIQKLYM  100 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------------------------TCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------------------------CcCEEEC
Confidence            4455555555555544444444555555555555555444444444444                        4555555


Q ss_pred             cCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCccc
Q 046055          240 WGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT  319 (549)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  319 (549)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus       101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            54444443344444555555555555555433222234555555555555555555555566677777777777776633


Q ss_pred             CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccC
Q 046055          320 IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNL  399 (549)
Q Consensus       320 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  399 (549)
                         .+..+++|+.+++++|.+.+.     ...+.+++|++++|.+... +..  ..++|+.|++++|.+++.  ..+..+
T Consensus       181 ---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l  247 (390)
T 3o6n_A          181 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNY  247 (390)
T ss_dssp             ---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred             ---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCC
Confidence               245678999999999988743     3457899999999999854 332  357999999999999743  578899


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeC
Q 046055          400 KVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL  479 (549)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  479 (549)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|++++ ++..+..+++|+.|++++|+++ .++..+..+++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence            999999999999998889999999999999999999985 5666678899999999999999 56677888999999999


Q ss_pred             CCCCCcccCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055          480 SYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       480 ~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      ++|++... | ...+++|+.+++++||+.|.+..
T Consensus       326 ~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          326 DHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             CSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCcccee-C-chhhccCCEEEcCCCCccchhHH
Confidence            99999855 3 56789999999999999986543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.6e-33  Score=287.69  Aligned_cols=334  Identities=18%  Similarity=0.203  Sum_probs=224.9

Q ss_pred             CCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055          135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ  214 (549)
Q Consensus       135 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  214 (549)
                      +.+++.++++++.++...+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45666666666666644444555666666666666666655555666666666666666666655555555666666666


Q ss_pred             cccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055          215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                      +++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.   .                   
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-------------------  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D-------------------  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C-------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C-------------------
Confidence            666665544444445555666666666655544444555555555555555555432   1                   


Q ss_pred             CCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccccc
Q 046055          295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN  374 (549)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  374 (549)
                           +..+++|+.+++.+|.+.+     +...++|+.|++++|.+....+.   ..++|+.|++++|.+++  +..+..
T Consensus       188 -----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~  252 (597)
T 3oja_B          188 -----LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLN  252 (597)
T ss_dssp             -----GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGG
T ss_pred             -----hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--Chhhcc
Confidence                 2334455555555554432     22345677777777777654332   23578888888888874  356778


Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN  454 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  454 (549)
                      +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ ++..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            8899999999998887778888888999999999998874 4556677899999999999998 5677778889999999


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCC
Q 046055          455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~  511 (549)
                      +++|.++...   +..+++|+.|++++|++.+... ...+..+....+.+++..|..
T Consensus       331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCc
Confidence            9999998542   6678899999999999875422 234556666777888888864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-32  Score=265.05  Aligned_cols=306  Identities=23%  Similarity=0.323  Sum_probs=172.5

Q ss_pred             cCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCce
Q 046055          133 GTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL  212 (549)
Q Consensus       133 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  212 (549)
                      ..+++|++|+++++.+.. .+ .+..+++|++|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            345666666666666652 22 25556666666666665554322  55556666666666555432  23444555555


Q ss_pred             eecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccc
Q 046055          213 VQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLF  292 (549)
Q Consensus       213 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  292 (549)
                      |++++|.+.+..+  +..+++|++|++++|...... .                        .+..+++|+.|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~------------------------~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-S------------------------PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-G------------------------GGTTCTTCCEEECCSSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCcccc-c------------------------chhhCCCCcEEEecCCCc
Confidence            5555554442211  334444444444444332111 1                        233444444444444443


Q ss_pred             ccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccc
Q 046055          293 SGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSI  372 (549)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  372 (549)
                      ....+  +..+++|+++++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+  +
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            32211  44445555555555554422 21 4456666666666666654433  5556667777777776663332  6


Q ss_pred             ccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCE
Q 046055          373 GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSI  452 (549)
Q Consensus       373 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  452 (549)
                      ..+++|++|++++|.+++ + ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus       240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            667777777777777653 2 3466677777777777777643  34667777777777777777666777777777777


Q ss_pred             EECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          453 LNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       453 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      |++++|.+++..+  +..+++|++|++++|+++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            7777777775444  666777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-33  Score=268.15  Aligned_cols=258  Identities=27%  Similarity=0.492  Sum_probs=207.3

Q ss_pred             CccEEECcCCcccc--cCCccccCCCCccEEeccc-cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEE
Q 046055          257 KLLLLDVSSNQIEG--KIPRDLCKGERLKSLILMQ-NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI  333 (549)
Q Consensus       257 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  333 (549)
                      +++.|+++++.+.+  .++..+..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45555555555554  4555555555666666653 55555555566666666666676776666677777777788888


Q ss_pred             EeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC-CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcc
Q 046055          334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT-NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNI  412 (549)
Q Consensus       334 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (549)
                      ++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++ |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            8888887777777777888888888888888877888888887 888899998888878888888776 99999999999


Q ss_pred             cccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCC
Q 046055          413 SGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGG  492 (549)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  492 (549)
                      .+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++.+.+|..+
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            888888889999999999999999866555 7888999999999999998899999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCC
Q 046055          493 HFPAFDEASFAGNPNLCLPRNVTC  516 (549)
Q Consensus       493 ~~~~l~~l~l~~n~~~~~~~~~~~  516 (549)
                      .+++|+.+++.+||++|+.+...|
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccccChHHhcCCCCccCCCCCCC
Confidence            999999999999999999766655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=287.11  Aligned_cols=311  Identities=16%  Similarity=0.149  Sum_probs=230.0

Q ss_pred             CCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEEC
Q 046055          184 ISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDV  263 (549)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  263 (549)
                      .+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            34445555555444333334444555555555555555444444555555555555555555444444555566666666


Q ss_pred             cCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc
Q 046055          264 SSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE  343 (549)
Q Consensus       264 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  343 (549)
                      ++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. +  +..+++|+.|++++|.+.+.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc
Confidence            66665543333345566666666666666666666677788888888888887743 2  45688999999999988743


Q ss_pred             cCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055          344 IPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC  423 (549)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (549)
                           .....|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|..+
T Consensus       208 -----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          208 -----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             -----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             -----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                 45578999999999998544332   3689999999999974  4678899999999999999998889999999


Q ss_pred             CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccC
Q 046055          424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA  503 (549)
Q Consensus       424 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~  503 (549)
                      ++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. | ...+++|+.++++
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~  353 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLS  353 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECC
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEee
Confidence            999999999999985 5666778899999999999999 6777788999999999999999855 3 5678999999999


Q ss_pred             CCCCCCCC
Q 046055          504 GNPNLCLP  511 (549)
Q Consensus       504 ~n~~~~~~  511 (549)
                      +||+.|.|
T Consensus       354 ~N~~~~~~  361 (597)
T 3oja_B          354 HNDWDCNS  361 (597)
T ss_dssp             SSCEEHHH
T ss_pred             CCCCCChh
Confidence            99999865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.4e-32  Score=262.57  Aligned_cols=308  Identities=21%  Similarity=0.305  Sum_probs=222.3

Q ss_pred             hccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCC
Q 046055          106 FLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLIS  185 (549)
Q Consensus       106 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  185 (549)
                      .+..+++|++|++++ +.+.. + +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+...  ..+..+++
T Consensus        39 ~~~~l~~L~~L~l~~-~~i~~-~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAG-EKVAS-I-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCS-SCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cchhcccccEEEEeC-Ccccc-c-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence            355789999999998 55543 3 358889999999999999985433  89999999999999999864  46899999


Q ss_pred             CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055          186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS  265 (549)
Q Consensus       186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  265 (549)
                      |++|++++|.+....+  +..+++|+.+++++|......+ .+..+++|++|++++|.+.+. +. +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccC
Confidence            9999999999985433  7889999999999997664443 377899999999999988743 32 77888899999988


Q ss_pred             CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055          266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP  345 (549)
Q Consensus       266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  345 (549)
                      |.+.+..+  +..+++|+.+++++|.+....+  +.                        .+++|++|++++|.+.+..+
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~------------------------~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VA------------------------NMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG------------------------GCTTCCEEECCSSCCCCCGG
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hh------------------------cCCcCCEEEccCCccCCCcc
Confidence            88764322  5566666666666665543321  33                        44555555555555553332


Q ss_pred             ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCC
Q 046055          346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS  425 (549)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (549)
                        +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..+..+..+++
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence              45556666666666666532  3456677777777777777632  34667777777777777777666677777788


Q ss_pred             CcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          426 LTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       426 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |++|++++|.+++..|  +..+++|+.|++++|.++
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888888776554  677788888888888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.6e-30  Score=247.37  Aligned_cols=288  Identities=20%  Similarity=0.212  Sum_probs=133.3

Q ss_pred             CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055          161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW  240 (549)
Q Consensus       161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  240 (549)
                      +++.++++++.+..+ +..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            345555555544422 22121  345555555555544444444445555555555554444444444444444444444


Q ss_pred             CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc--
Q 046055          241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG--  318 (549)
Q Consensus       241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--  318 (549)
                      +|.++ .+|..+.  ++|+.|++++|.+.                        ...+..+..+++|+.+++.+|.+..  
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEIT------------------------KVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCC------------------------BBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccc------------------------ccCHhHhcCCccccEEECCCCcCCccC
Confidence            44444 2222221  34444444444443                        3333334444444444444444421  


Q ss_pred             cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccccc
Q 046055          319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN  398 (549)
Q Consensus       319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  398 (549)
                      ..+..+..+++|++|++++|.+... |..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            2333444455555555555554432 2111  145555555555555444445555555555555555554444444555


Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhC------CCCCCEEECCCCcccc--cCCccccC
Q 046055          399 LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQ------LRDLSILNLSRNQLTG--PIPTDMQD  470 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~l~~n~i~~--~~~~~l~~  470 (549)
                      +++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|..      .+.++.|++++|.+..  ..|..+..
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence            555555555555554 34444555555555555555555443333321      2455555555555532  33445555


Q ss_pred             CCCCCeEeCCCC
Q 046055          471 MMSLTTLDLSYN  482 (549)
Q Consensus       471 l~~L~~L~l~~n  482 (549)
                      +++++.+++++|
T Consensus       318 ~~~l~~l~L~~N  329 (330)
T 1xku_A          318 VYVRAAVQLGNY  329 (330)
T ss_dssp             CCCGGGEEC---
T ss_pred             ccceeEEEeccc
Confidence            555555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.8e-30  Score=246.78  Aligned_cols=267  Identities=17%  Similarity=0.201  Sum_probs=137.7

Q ss_pred             CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055          208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL  287 (549)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  287 (549)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            34444555544444444444444555555555555555444444555555555555555554 2222222  45555555


Q ss_pred             cccccccCCCccccCCCCCcEEEccCCcCcc--cCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec
Q 046055          288 MQNLFSGPIPEELGACESLTKFRAMKNQLNG--TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA  365 (549)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~  365 (549)
                      ++|.+....+..+..+++|+.|++.+|.+..  ..+..+..+ +|++|++++|.+.+. |..+  .++|++|++++|.+.
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDL--PETLNELHLDHNKIQ  206 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSS--CSSCSCCBCCSSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Cccc--cCCCCEEECCCCcCC
Confidence            5555554444445555555555555555532  233334344 566666666665542 2222  145666666666665


Q ss_pred             ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhh
Q 046055          366 GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS  445 (549)
Q Consensus       366 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  445 (549)
                      +..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|.
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            554455556666666666666665444445555666666666666655 4455555566666666666666544444443


Q ss_pred             C------CCCCCEEECCCCccc--ccCCccccCCCCCCeEeCCCC
Q 046055          446 Q------LRDLSILNLSRNQLT--GPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       446 ~------~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      .      .++|+.|++++|.+.  ...+..+..+++|+.+++++|
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            2      244556666666554  344455555666666666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=244.02  Aligned_cols=290  Identities=22%  Similarity=0.285  Sum_probs=222.5

Q ss_pred             CCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeec
Q 046055          136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL  215 (549)
Q Consensus       136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  215 (549)
                      .+++.++++++.++ ..|..+.  +.++.|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            37899999999887 4555443  68999999999999888888999999999999999999888899999999999999


Q ss_pred             ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccc--cCCccccCCCCccEEeccccccc
Q 046055          216 FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG--KIPRDLCKGERLKSLILMQNLFS  293 (549)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~  293 (549)
                      ++|.+.. +|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.
T Consensus       108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            9999984 444433  799999999999997767778889999999999998853  33444555555555555555444


Q ss_pred             cCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc
Q 046055          294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG  373 (549)
Q Consensus       294 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  373 (549)
                      .                         +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus       185 ~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          185 T-------------------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             S-------------------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             c-------------------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            2                         232222  5677777777777766666777777777888877777766666777


Q ss_pred             cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccccc------CCCCcEEECCCCcCcc--cchhhhh
Q 046055          374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG------CISLTTVDFSRNSLSG--EIPKAIS  445 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~~--~~~~~~~  445 (549)
                      .+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..|..      .+.++.|++++|.+..  ..|..|.
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            7888888888888877 67777777888888888888887665555543      3778889999998864  5567888


Q ss_pred             CCCCCCEEECCCCc
Q 046055          446 QLRDLSILNLSRNQ  459 (549)
Q Consensus       446 ~~~~L~~L~l~~n~  459 (549)
                      .+++++.+++++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            88999999998884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.4e-29  Score=244.16  Aligned_cols=290  Identities=22%  Similarity=0.286  Sum_probs=190.3

Q ss_pred             CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055          137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF  216 (549)
Q Consensus       137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  216 (549)
                      +++.++++++.++ .+|..+.  ++++.|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5666777666665 3443332  456666666666665555556666666666666666665555555666666666666


Q ss_pred             cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      +|.+.. +|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..                      ....
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~  165 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGFE  165 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGSC
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCCC
Confidence            665552 222222  455555555555553333344555555555555555431                      0123


Q ss_pred             CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                      +..+..+ +|+.+++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~  241 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP  241 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred             cccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence            3344444 5666666666665 3444332  6788888888888877777788888888888888888877677788888


Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCccccc------CCCCcEEECCCCcCc--ccchhhhhCCC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISG------CISLTTVDFSRNSLS--GEIPKAISQLR  448 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~L~~n~i~--~~~~~~~~~~~  448 (549)
                      +|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..      .++|+.|++++|.+.  ...+..|..++
T Consensus       242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~  320 (332)
T 2ft3_A          242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT  320 (332)
T ss_dssp             TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred             CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence            8999999988887 77777888888999999999888666666654      367899999999887  56778889999


Q ss_pred             CCCEEECCCCc
Q 046055          449 DLSILNLSRNQ  459 (549)
Q Consensus       449 ~L~~L~l~~n~  459 (549)
                      +|+.+++++|+
T Consensus       321 ~L~~l~l~~n~  331 (332)
T 2ft3_A          321 DRLAIQFGNYK  331 (332)
T ss_dssp             CSTTEEC----
T ss_pred             hhhhhhccccc
Confidence            99999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.3e-30  Score=248.38  Aligned_cols=251  Identities=27%  Similarity=0.424  Sum_probs=212.4

Q ss_pred             CCccEEEccCccccc--cCCccccCCCCccEEECcC-CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcE
Q 046055          232 PNLEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSS-NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTK  308 (549)
Q Consensus       232 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  308 (549)
                      ..+++|+++++.+.+  .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467777777777776  6677777777777777774 7777677777777778888888888777677777888888888


Q ss_pred             EEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC-CCCEEEccCceecccCCcccccCCCCCEEEccCCc
Q 046055          309 FRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD-SLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR  387 (549)
Q Consensus       309 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  387 (549)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+.+..|..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888888877888888889999999999998878888888877 899999999999988888888887 9999999999


Q ss_pred             CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcc
Q 046055          388 FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTD  467 (549)
Q Consensus       388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  467 (549)
                      +++..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9888888899999999999999999855554 788899999999999999889999999999999999999999888875


Q ss_pred             ccCCCCCCeEeCCCCCCc
Q 046055          468 MQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       468 l~~l~~L~~L~l~~n~~~  485 (549)
                       ..+++|+.+++++|+..
T Consensus       288 -~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEE
T ss_pred             -ccccccChHHhcCCCCc
Confidence             78899999999999844

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.8e-33  Score=284.76  Aligned_cols=350  Identities=19%  Similarity=0.197  Sum_probs=183.0

Q ss_pred             CCCceeecCCccccCccC-CccccCCCCCCEEEccCccCCcc----CCccccCCCCCCeEeccCccccccCCccc-cCCC
Q 046055          111 KNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCNISGE----IPASLSQLKLLDALFLQMNKLTGHIHPEL-SGLI  184 (549)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~l-~~l~  184 (549)
                      ++|++|++++ +.+.... ...+..+++|++|++++|.+++.    .+..+..+++|++|++++|.+.......+ ..++
T Consensus         3 ~~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhh-cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4677788876 4443322 22356677888888888877642    34556667778888888777664322222 2233


Q ss_pred             ----CCCEEeCCCCcCcc----ccCccccCCCcCceeecccccCcccCCcc-----CCCCCCccEEEccCccccccC---
Q 046055          185 ----SLTQLDLSLNCLTG----EVPESFSALKNLSLVQLFKNNLRGPFPSF-----VGDYPNLEVLQVWGNNFTGEL---  248 (549)
Q Consensus       185 ----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~---  248 (549)
                          +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..     ....++|++|++++|.++...   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                57777777777763    33556667777777777777765432221     122456777777777666422   


Q ss_pred             -CccccCCCCccEEECcCCcccccCCcccc-----CCCCccEEeccccccccC----CCccccCCCCCcEEEccCCcCcc
Q 046055          249 -PENLGRNRKLLLLDVSSNQIEGKIPRDLC-----KGERLKSLILMQNLFSGP----IPEELGACESLTKFRAMKNQLNG  318 (549)
Q Consensus       249 -~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~  318 (549)
                       +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++..    .+..+..+++|++|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             34445566777777777766543222222     134666666666655542    12334445555555555555543


Q ss_pred             cC-----CccCCCCCCCCEEEeecCcCccc----cCccccCCCCCCEEEccCceecccCCcccc-----cCCCCCEEEcc
Q 046055          319 TI-----PAGIFNLPLLKMIELDHNLLSGE----IPENLSISDSLNQLKVAYNNIAGKIPPSIG-----NLTNLNVLSLQ  384 (549)
Q Consensus       319 ~~-----~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~  384 (549)
                      ..     +..+..+++|++|++++|.++..    .+..+..+++|++|++++|.+.+..+..+.     ..++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            21     11112345555555555555432    223333445555555555555432221111     11355555555


Q ss_pred             CCcCCCC----CccccccCCCCCEEEccCCcccccCCccccc-----CCCCcEEECCCCcCcc----cchhhhhCCCCCC
Q 046055          385 NNRFNGE----LPEEMFNLKVISLINVSSNNISGEIPTSISG-----CISLTTVDFSRNSLSG----EIPKAISQLRDLS  451 (549)
Q Consensus       385 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~  451 (549)
                      +|.+++.    ++..+..+++|+.|++++|.+.+..+..+..     .++|++|++++|.+++    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            5554432    2233334455555555555544332222221     3455555555555543    3344444455555


Q ss_pred             EEECCCCccc
Q 046055          452 ILNLSRNQLT  461 (549)
Q Consensus       452 ~L~l~~n~i~  461 (549)
                      +|++++|+++
T Consensus       402 ~L~l~~N~i~  411 (461)
T 1z7x_W          402 ELDLSNNCLG  411 (461)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            5555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.3e-33  Score=283.94  Aligned_cols=374  Identities=19%  Similarity=0.136  Sum_probs=195.6

Q ss_pred             CCCCEEEccCCCCccccchh-ccCCCCCceeecCCccccCc----cCCccccCCCCCCEEEccCccCCccCCccc-cCCC
Q 046055           87 QSLEYLGLNGIGLNGTAPVF-LSLLKNLREMYIGYFNTYTG----GIPPEFGTLSKLRVLDMASCNISGEIPASL-SQLK  160 (549)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~  160 (549)
                      ++|++|+++++.+....... +..+++|++|++++ +.+..    .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccC-CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            34566666666655433222 55566666666665 33332    234445556666666666666654322222 2233


Q ss_pred             ----CCCeEeccCcccccc----CCccccCCCCCCEEeCCCCcCccccCccc-----cCCCcCceeecccccCcccC---
Q 046055          161 ----LLDALFLQMNKLTGH----IHPELSGLISLTQLDLSLNCLTGEVPESF-----SALKNLSLVQLFKNNLRGPF---  224 (549)
Q Consensus       161 ----~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~---  224 (549)
                          +|++|++++|.+...    .+..+..+++|++|++++|.+....+..+     ...++|++|++++|.+.+..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                466666666665532    23445566666666666666553322221     12345666666666655422   


Q ss_pred             -CccCCCCCCccEEEccCccccccCCcccc-----CCCCccEEECcCCccccc----CCccccCCCCccEEecccccccc
Q 046055          225 -PSFVGDYPNLEVLQVWGNNFTGELPENLG-----RNRKLLLLDVSSNQIEGK----IPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       225 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                       +..+..+++|++|++++|.+....+..+.     ..++|+.|++++|.+.+.    ++..+..+++|++|++++|.+++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             23333456666666666665533222222     244666666666666542    23344455666666666665543


Q ss_pred             CCC-----ccccCCCCCcEEEccCCcCccc----CCccCCCCCCCCEEEeecCcCccccCcccc-----CCCCCCEEEcc
Q 046055          295 PIP-----EELGACESLTKFRAMKNQLNGT----IPAGIFNLPLLKMIELDHNLLSGEIPENLS-----ISDSLNQLKVA  360 (549)
Q Consensus       295 ~~~-----~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~  360 (549)
                      ...     ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            211     1122356666666666666532    344444566666666666665543322221     12466666666


Q ss_pred             Cceeccc----CCcccccCCCCCEEEccCCcCCCCCcccccc-----CCCCCEEEccCCcccc----cCCcccccCCCCc
Q 046055          361 YNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-----LKVISLINVSSNNISG----EIPTSISGCISLT  427 (549)
Q Consensus       361 ~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~  427 (549)
                      +|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|.+.+    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            6666543    2334455566666666666655433333321     4566666666666654    3445555666666


Q ss_pred             EEECCCCcCcccchhhhh-----CCCCCCEEECCCCccc
Q 046055          428 TVDFSRNSLSGEIPKAIS-----QLRDLSILNLSRNQLT  461 (549)
Q Consensus       428 ~L~L~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~i~  461 (549)
                      +|++++|.+++.....+.     ...+|+.|++.++.+.
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            666666666543222211     1234666666555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.8e-31  Score=278.97  Aligned_cols=396  Identities=13%  Similarity=0.032  Sum_probs=200.5

Q ss_pred             CCCCCCEEEccCCCCccccchhccC-CC-CCceeecCCccccCc-cCCccccCCCCCCEEEccCccCCccC----Ccccc
Q 046055           85 EIQSLEYLGLNGIGLNGTAPVFLSL-LK-NLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASCNISGEI----PASLS  157 (549)
Q Consensus        85 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~  157 (549)
                      .+++|++|++++|.+....+..++. ++ +|++|+++++..... .++.....+++|++|++++|.+++..    +....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            3455555555555444433333333 22 255555554332111 11112234556666666666554331    12234


Q ss_pred             CCCCCCeEeccCccccccC----CccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCc---ccCCccCCC
Q 046055          158 QLKLLDALFLQMNKLTGHI----HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLR---GPFPSFVGD  230 (549)
Q Consensus       158 ~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~  230 (549)
                      .+++|++|+++.+.+....    +..+..+++|++|++++|.+.+ .+..+..+++|+.++++.....   ......+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4566666666666554221    1223455666666666666553 3445556666666666543221   122233455


Q ss_pred             CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccEEeccccccccCCCccccCCCCCcEE
Q 046055          231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF  309 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  309 (549)
                      +++|+.++++++... .++..+..+++|++|++++|.+.+... ..+..+++|+.|++.++......+.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            667777777665332 455555666777777777776543222 223556677777666321111111222445666666


Q ss_pred             EccC-----------CcCccc-CCccCCCCCCCCEEEeecCcCccccCccccC-CCCCCEEEcc----Cceeccc-----
Q 046055          310 RAMK-----------NQLNGT-IPAGIFNLPLLKMIELDHNLLSGEIPENLSI-SDSLNQLKVA----YNNIAGK-----  367 (549)
Q Consensus       310 ~l~~-----------~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----  367 (549)
                      ++.+           +.+++. .......+++|++|++..+.+++..+..+.. +++|++|+++    .+.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            6662           333322 1111234666777777666665544444433 5666666665    3344421     


Q ss_pred             CCcccccCCCCCEEEccCCc--CCCCCccccc-cCCCCCEEEccCCcccccC-CcccccCCCCcEEECCCCcCccc-chh
Q 046055          368 IPPSIGNLTNLNVLSLQNNR--FNGELPEEMF-NLKVISLINVSSNNISGEI-PTSISGCISLTTVDFSRNSLSGE-IPK  442 (549)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~-~~~  442 (549)
                      ++..+..+++|++|++++|.  +++..+..+. .+++|+.|++++|.+++.. +..+.++++|++|++++|.+++. .+.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            22224456677777775443  3333333332 3566777777777665422 22335566777777777766533 233


Q ss_pred             hhhCCCCCCEEECCCCcccccCCccc-cCCCCCCeEeCCCC
Q 046055          443 AISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYN  482 (549)
Q Consensus       443 ~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n  482 (549)
                      ....+++|+.|++++|+++......+ ..+|.+....+..+
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            34556677777777777664433333 23455555444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2e-27  Score=239.05  Aligned_cols=232  Identities=19%  Similarity=0.161  Sum_probs=154.9

Q ss_pred             CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055          281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA  360 (549)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  360 (549)
                      +++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            44455555555544444455555556666666665554555556666666666666666665555556666777777777


Q ss_pred             CceecccCCcccccCCCCCEEEccCCc-CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCccc
Q 046055          361 YNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGE  439 (549)
Q Consensus       361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~  439 (549)
                      +|.+.+..+..|..+++|++|++++|. +....+..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence            777765555566777777777777643 3322333566777777777777777633 2 466777777888888877776


Q ss_pred             chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCC
Q 046055          440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNV  514 (549)
Q Consensus       440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~  514 (549)
                      .+..|..+++|+.|++++|+++...+..+..+++|+.|++++|++.+..+.. ..+++|+.+++++||+.|+|+..
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            6777777778888888888877777777777778888888888777555543 45777788888888888877654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=237.89  Aligned_cols=232  Identities=19%  Similarity=0.177  Sum_probs=150.4

Q ss_pred             CccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEcc
Q 046055          281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA  360 (549)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  360 (549)
                      +++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44445555554444444455555555555555555554444555566666666666666665555556666666666666


Q ss_pred             CceecccCCcccccCCCCCEEEccCCc-CCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCccc
Q 046055          361 YNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGE  439 (549)
Q Consensus       361 ~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~  439 (549)
                      +|.+.+..+..|..+++|++|++++|. +....+..|..+++|+.|++++|.+.. +| .+..+++|++|++++|.+++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence            666665555566667777777777643 332233356667777777777777662 33 366677777777777777766


Q ss_pred             chhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCC
Q 046055          440 IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNV  514 (549)
Q Consensus       440 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~  514 (549)
                      .+..|..+++|+.|++++|+++...+..|..+++|++|++++|++....+.. ..+++|+.+++++||+.|+|+..
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            6777777777777777777777777777777777777777777777555543 45677777888888888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.2e-28  Score=233.00  Aligned_cols=240  Identities=20%  Similarity=0.217  Sum_probs=176.7

Q ss_pred             CCccEEeccccccccCCCccccCCCCCcEEEccCCcCccc--CCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEE
Q 046055          280 ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGT--IPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL  357 (549)
Q Consensus       280 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  357 (549)
                      +++++|++++|.+.......+..+++|++|++++|.+...  .+..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            3555555555555544444455666666666666665422  23445567778888888887764 34456777888888


Q ss_pred             EccCceecccCC-cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccc-cCCcccccCCCCcEEECCCCc
Q 046055          358 KVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG-EIPTSISGCISLTTVDFSRNS  435 (549)
Q Consensus       358 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~  435 (549)
                      ++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            888888875544 567788888888888888876777778888888888888888875 467778888888888888888


Q ss_pred             CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCC-CCCCccccCCCCCCCCCCC
Q 046055          436 LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHF-PAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       436 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~l~~l~l~~n~~~~~~~~  513 (549)
                      +++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++.+..|.. ..+ ++|+.+++++|++.|.|..
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            88777788888888888888888888776667888888888888888888777654 455 4888888888888888776


Q ss_pred             CCCCCCc
Q 046055          514 VTCLPSI  520 (549)
Q Consensus       514 ~~~~~~~  520 (549)
                      .....|+
T Consensus       267 ~~~~~~l  273 (306)
T 2z66_A          267 QSFLQWI  273 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.3e-28  Score=237.71  Aligned_cols=279  Identities=17%  Similarity=0.154  Sum_probs=218.9

Q ss_pred             CCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055          207 LKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI  286 (549)
Q Consensus       207 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (549)
                      ++.....+.+++.+. .+|..+  .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            455556777788777 444433  35899999999999876666888999999999999999877777788899999999


Q ss_pred             ccccccccCCCccccCCCCCcEEEccCCcCcccCC-ccCCCCCCCCEEEeecC-cCccccCccccCCCCCCEEEccCcee
Q 046055          287 LMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIP-AGIFNLPLLKMIELDHN-LLSGEIPENLSISDSLNQLKVAYNNI  364 (549)
Q Consensus       287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n~~  364 (549)
                      +++|.++...+..+..+++|++|++++|++.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            99999987666668889999999999998884333 36778999999999998 46666677788889999999999999


Q ss_pred             cccCCcccccCCCCCEEEccCCcCCCCCccc-cccCCCCCEEEccCCcccccCCccc---ccCCCCcEEECCCCcCcc--
Q 046055          365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEE-MFNLKVISLINVSSNNISGEIPTSI---SGCISLTTVDFSRNSLSG--  438 (549)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~i~~--  438 (549)
                      .+..+..+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+..+   ...+.++.++++++.+.+  
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            8888888889999999999999886 44443 4468899999999998876544433   245678888888888775  


Q ss_pred             --cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055          439 --EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       439 --~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                        .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+..|
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence              356677888888888888888884444445788888888888888876554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-30  Score=272.13  Aligned_cols=395  Identities=12%  Similarity=0.025  Sum_probs=227.9

Q ss_pred             CCCCcCEEEccCCcceeccCccccCC--CCCCEEEccCCCC-ccc-cchhccCCCCCceeecCCccccCcc----CCccc
Q 046055           61 SLKNLKHLSFGGNYFSGEIPESYSEI--QSLEYLGLNGIGL-NGT-APVFLSLLKNLREMYIGYFNTYTGG----IPPEF  132 (549)
Q Consensus        61 ~l~~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~l~~~~~-~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~  132 (549)
                      .+++|++|++++|.+.+..+..+...  .+|++|++.+|.. ... .+.....+++|++|++++ +.+.+.    ++...
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE-SSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT-CEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc-ccccCcchhHHHHHH
Confidence            45666666666665554433333332  2366666666541 111 111223566666666666 333222    22233


Q ss_pred             cCCCCCCEEEccCccCC----ccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCc---cccCcccc
Q 046055          133 GTLSKLRVLDMASCNIS----GEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLT---GEVPESFS  205 (549)
Q Consensus       133 ~~~~~L~~L~l~~~~i~----~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~  205 (549)
                      ..+++|++|+++++.++    +..+..+..+++|+.|++.+|.+.+ .+..+..+++|++|+++.....   ......+.
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            45666667776666664    1223334456667777776666653 2344566667777766642211   12233445


Q ss_pred             CCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCC-ccccCCCCccEEECcCCcccccCCccccCCCCccE
Q 046055          206 ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP-ENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKS  284 (549)
Q Consensus       206 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  284 (549)
                      .+++|+.+++.++... .++..+..+++|++|++++|.++.... ..+..+++|+.|+++++......+.....+++|++
T Consensus       268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            5666777666654322 344455556677777777776543222 22456677777777632222122222345667777


Q ss_pred             Eeccc-----------cccccCCC-ccccCCCCCcEEEccCCcCcccCCccCCC-CCCCCEEEee----cCcCccc----
Q 046055          285 LILMQ-----------NLFSGPIP-EELGACESLTKFRAMKNQLNGTIPAGIFN-LPLLKMIELD----HNLLSGE----  343 (549)
Q Consensus       285 L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~~~l~~~----  343 (549)
                      |++++           +.++.... .....+++|++|++..+.+++..+..+.. +++|+.|+++    .+.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            77773           33332111 11345778888888777776555544443 7888888886    4455532    


Q ss_pred             -cCccccCCCCCCEEEccCce--ecccCCccc-ccCCCCCEEEccCCcCCCC-CccccccCCCCCEEEccCCcccccCC-
Q 046055          344 -IPENLSISDSLNQLKVAYNN--IAGKIPPSI-GNLTNLNVLSLQNNRFNGE-LPEEMFNLKVISLINVSSNNISGEIP-  417 (549)
Q Consensus       344 -~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-  417 (549)
                       .+..+..+++|++|++++|.  +++.....+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|++++... 
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence             11224567889999987544  443333223 3478899999999988653 34455678999999999999764433 


Q ss_pred             cccccCCCCcEEECCCCcCcccchhhh-hCCCCCCEEECCCC
Q 046055          418 TSISGCISLTTVDFSRNSLSGEIPKAI-SQLRDLSILNLSRN  458 (549)
Q Consensus       418 ~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~l~~n  458 (549)
                      .....+++|++|++++|+++......+ ..++.++...+..+
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            334578999999999999886543333 45677766666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=230.91  Aligned_cols=279  Identities=15%  Similarity=0.129  Sum_probs=153.5

Q ss_pred             CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055          231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR  310 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  310 (549)
                      ++.....+.+++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344444555555555 3444332  3566666666666554444555666666666666666655555566666666666


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCc-eecccCCcccccCCCCCEEEccCCcC
Q 046055          311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYN-NIAGKIPPSIGNLTNLNVLSLQNNRF  388 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l  388 (549)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            66666653333335556666666666666654433 34555666666666665 34444445556666666666666666


Q ss_pred             CCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh---hCCCCCCEEECCCCcccc---
Q 046055          389 NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI---SQLRDLSILNLSRNQLTG---  462 (549)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~---  462 (549)
                      .+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+   .....++.++++++.+.+   
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l  266 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL  266 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence            55555566666666666666666543222233345666666666666654332222   234455566666655543   


Q ss_pred             -cCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCC
Q 046055          463 -PIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPR  512 (549)
Q Consensus       463 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~  512 (549)
                       .+|..+..+++|++|++++|++....+.. +.+++|+.+++++||+.|.|+
T Consensus       267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             23444555666666666666666333332 455666666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.3e-27  Score=222.50  Aligned_cols=228  Identities=20%  Similarity=0.209  Sum_probs=109.0

Q ss_pred             cCceeecccccCcccCCccCCCCCCccEEEccCcccccc--CCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055          209 NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE--LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI  286 (549)
Q Consensus       209 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (549)
                      ++++|++++|.+....+..+..+++|++|++++|.++..  .+..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence            444445544444433333344455555555555544421  12333445555555555555542 333344445555555


Q ss_pred             ccccccccCCC-ccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceec
Q 046055          287 LMQNLFSGPIP-EELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIA  365 (549)
Q Consensus       287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~  365 (549)
                      +++|.+....+ ..+..                        +++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       108 l~~n~l~~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLS------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CTTSEEESSTTTTTTTT------------------------CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccccccchhhhh------------------------ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            55544443322 23333                        444444444444444444444444445555555555444


Q ss_pred             c-cCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh
Q 046055          366 G-KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI  444 (549)
Q Consensus       366 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  444 (549)
                      + ..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            3 244444555555555555555544444445555555555555555544444445555555555555555554444444


Q ss_pred             hCCC-CCCEEECCCCccc
Q 046055          445 SQLR-DLSILNLSRNQLT  461 (549)
Q Consensus       445 ~~~~-~L~~L~l~~n~i~  461 (549)
                      ..++ +|+.|++++|.++
T Consensus       244 ~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCTTCCEEECTTCCEE
T ss_pred             HhhhccCCEEEccCCCee
Confidence            4442 5555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.7e-27  Score=220.72  Aligned_cols=248  Identities=19%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             CccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc-CcccCCccCCCCCCCCEEEe
Q 046055          257 KLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-LNGTIPAGIFNLPLLKMIEL  335 (549)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l  335 (549)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            34444444444433333333334444444444444433333344444444455554443 33333444555555555555


Q ss_pred             ecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccccc
Q 046055          336 DHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE  415 (549)
Q Consensus       336 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (549)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            55555555555555555566666666655544444455566666666666666533444455566666666666666655


Q ss_pred             CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC---C
Q 046055          416 IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG---G  492 (549)
Q Consensus       416 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~---~  492 (549)
                      .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...-+ ...-...++.+..+.+.+....|..   .
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~  271 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR  271 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHhCCc
Confidence            55566666666666666666665555556666666666666666652111 0011122334444555555555432   2


Q ss_pred             CCCCCCccccCCC
Q 046055          493 HFPAFDEASFAGN  505 (549)
Q Consensus       493 ~~~~l~~l~l~~n  505 (549)
                      .+..++..++.||
T Consensus       272 ~l~~l~~~~l~~C  284 (285)
T 1ozn_A          272 DLKRLAANDLQGC  284 (285)
T ss_dssp             BGGGSCGGGSCCC
T ss_pred             ChhhcCHHHhccC
Confidence            2334444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=229.58  Aligned_cols=246  Identities=20%  Similarity=0.205  Sum_probs=131.0

Q ss_pred             CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccc
Q 046055          210 LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQ  289 (549)
Q Consensus       210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  289 (549)
                      ...++..+..+. .+|..+  .++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345555555555 333333  25667777777776655556666667777777777766655555566666666666666


Q ss_pred             cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC-cCccccCccccCCCCCCEEEccCceecccC
Q 046055          290 NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN-LLSGEIPENLSISDSLNQLKVAYNNIAGKI  368 (549)
Q Consensus       290 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  368 (549)
                      |.++...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|++|++++|.+. .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            6666555455555556666666655555444444555555555555553 222233334444555555555555554 22


Q ss_pred             CcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCC
Q 046055          369 PPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLR  448 (549)
Q Consensus       369 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~  448 (549)
                      | .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..+..++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            2 244445555555555555444444444555555555555555444444444555555555555555444444444445


Q ss_pred             CCCEEECCCCcc
Q 046055          449 DLSILNLSRNQL  460 (549)
Q Consensus       449 ~L~~L~l~~n~i  460 (549)
                      +|+.|++++|.+
T Consensus       280 ~L~~L~L~~Np~  291 (440)
T 3zyj_A          280 HLERIHLHHNPW  291 (440)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEcCCCCc
Confidence            555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.2e-27  Score=221.65  Aligned_cols=248  Identities=19%  Similarity=0.217  Sum_probs=148.2

Q ss_pred             cEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC
Q 046055          259 LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN  338 (549)
Q Consensus       259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  338 (549)
                      +.++.+++.+.. +|..+  .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            456666666552 33222  356777777777776665556666666777777666666555666666666666666666


Q ss_pred             c-CccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCC
Q 046055          339 L-LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIP  417 (549)
Q Consensus       339 ~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (549)
                      . +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 555555556666666666666666665555556666666666666666664444455566666666666666664444


Q ss_pred             cccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCC
Q 046055          418 TSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAF  497 (549)
Q Consensus       418 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l  497 (549)
                      ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++....+..+....+
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            45666666666666666666555666666666666666666666544455666666666666666665433322222334


Q ss_pred             CccccCCCCCCC
Q 046055          498 DEASFAGNPNLC  509 (549)
Q Consensus       498 ~~l~l~~n~~~~  509 (549)
                      +.+....+...|
T Consensus       251 ~~~~~~~~~~~c  262 (285)
T 1ozn_A          251 QKFRGSSSEVPC  262 (285)
T ss_dssp             HHCCSEECCCBE
T ss_pred             HhcccccCcccc
Confidence            444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.1e-26  Score=229.49  Aligned_cols=246  Identities=20%  Similarity=0.171  Sum_probs=125.4

Q ss_pred             ceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccc
Q 046055          211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQN  290 (549)
Q Consensus       211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  290 (549)
                      ..++..+..+. .+|..+  .+++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            34444444444 233322  245666666666666555555666666666666666665554455555555555555555


Q ss_pred             ccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc
Q 046055          291 LFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP  370 (549)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  370 (549)
                      .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.                       .+....+.
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~  190 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISEG  190 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTT
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccChh
Confidence            5554444445555555555555555443333344444555555554422                       22222223


Q ss_pred             ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCC
Q 046055          371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL  450 (549)
Q Consensus       371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  450 (549)
                      .|..+++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|
T Consensus       191 ~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            3444555555555555554 222 24445555555555555554445555555555555555555554445555555555


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCCCCCC
Q 046055          451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL  484 (549)
Q Consensus       451 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  484 (549)
                      +.|++++|+++...+..+..+++|+.|++++|++
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            5555555555544444455555555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.3e-26  Score=219.24  Aligned_cols=225  Identities=19%  Similarity=0.275  Sum_probs=155.8

Q ss_pred             CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055          256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL  335 (549)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  335 (549)
                      ++++.|++++|.+. .+|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44455555555544 33444444555555555555554 33444555566666666666655 55666666666777777


Q ss_pred             ecCcCccccCcccc---------CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055          336 DHNLLSGEIPENLS---------ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN  406 (549)
Q Consensus       336 ~~~~l~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (549)
                      ++|.+.+..|..+.         .+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence            76666555555443         3777888888888777 66667777888888888888877 4566677788888888


Q ss_pred             ccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      +++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888877777777888888888888888777777777888888888888888877778888888888888888766655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.8e-26  Score=216.68  Aligned_cols=234  Identities=18%  Similarity=0.230  Sum_probs=169.4

Q ss_pred             CcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEec
Q 046055          208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL  287 (549)
Q Consensus       208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  287 (549)
                      .+++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45666666666655 34444445566666666666665 55555555666666666666555 44555555555555555


Q ss_pred             cccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc
Q 046055          288 MQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK  367 (549)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  367 (549)
                      ++|.+.+..+..+..      .         .....+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+ 
T Consensus       158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            555444333322211      0         01112334888999999999888 666778888899999999999884 


Q ss_pred             CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCC
Q 046055          368 IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQL  447 (549)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~  447 (549)
                      ++..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            56678889999999999998888888889999999999999999888888889999999999999999988999999999


Q ss_pred             CCCCEEECCCCccc
Q 046055          448 RDLSILNLSRNQLT  461 (549)
Q Consensus       448 ~~L~~L~l~~n~i~  461 (549)
                      ++|+.+++..+.+.
T Consensus       301 ~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          301 PANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCEEECCGGGSC
T ss_pred             cCceEEeCCHHHHH
Confidence            99999999887765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=7.9e-30  Score=266.69  Aligned_cols=444  Identities=14%  Similarity=0.136  Sum_probs=213.8

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcC---CCCcc------------ccCCCCcCEEEccCCcceeccCc
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG---PLPVE------------IVSLKNLKHLSFGGNYFSGEIPE   81 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~------------l~~l~~L~~L~ls~~~~~~~~~~   81 (549)
                      +.++++++..  ..+..++..+++|++|+++++....   ..|..            ...+++|++|++++|.+.+..+.
T Consensus        46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            4666665543  2455666688888888888874321   11111            23456677777776665544443


Q ss_pred             ccc-CCCCCCEEEccCC-CCccc-cchhccCCCCCceeecCCccccCccCCc----cccCCCCCCEEEccCcc--CCcc-
Q 046055           82 SYS-EIQSLEYLGLNGI-GLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPP----EFGTLSKLRVLDMASCN--ISGE-  151 (549)
Q Consensus        82 ~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~--i~~~-  151 (549)
                      .+. .+++|++|++.+| .+... .+.....+++|++|++++ +.+.+..+.    ....+++|++|++++|.  ++.. 
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE-SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA  202 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT-CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC-CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence            443 4566666666666 23221 222233556666666655 223222111    12244455555555553  1110 


Q ss_pred             CCccccCCCCCCeEeccCc-cccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCC
Q 046055          152 IPASLSQLKLLDALFLQMN-KLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGD  230 (549)
Q Consensus       152 ~~~~l~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  230 (549)
                      .......+++|+.|++.+| .+.+ .+..+..+++|++|+++.+...                 +..+.+.+ ++..+..
T Consensus       203 l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~  263 (594)
T 2p1m_B          203 LERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSG  263 (594)
T ss_dssp             HHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhc
Confidence            1111123445555555544 1211 2223334445555544332110                 00000110 1112233


Q ss_pred             CCCccEE-EccCccccccCCccccCCCCccEEECcCCcccccCCc-cccCCCCccEEeccccccccCCC-ccccCCCCCc
Q 046055          231 YPNLEVL-QVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPR-DLCKGERLKSLILMQNLFSGPIP-EELGACESLT  307 (549)
Q Consensus       231 ~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  307 (549)
                      +++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.... .+..+++|++|++.+| +..... .....+++|+
T Consensus       264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence            4444444 2222111 12222223345555555555554321111 1234455555555554 221100 1112345555


Q ss_pred             EEEccC---------CcCcccCCccCC-CCCCCCEEEeecCcCccccCcccc-CCCCCCEEEcc--C----ceecc----
Q 046055          308 KFRAMK---------NQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLS-ISDSLNQLKVA--Y----NNIAG----  366 (549)
Q Consensus       308 ~L~l~~---------~~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~----  366 (549)
                      +|++.+         +.+++.....+. .+++|+.|.+..+.+++.....+. .+++|++|+++  +    +.+++    
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence            555522         222221111111 366777776666666544433332 35677777776  2    23331    


Q ss_pred             -cCCcccccCCCCCEEEccCCcCCCCCcccccc-CCCCCEEEccCCcccccCCccc-ccCCCCcEEECCCCcCcccchh-
Q 046055          367 -KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFN-LKVISLINVSSNNISGEIPTSI-SGCISLTTVDFSRNSLSGEIPK-  442 (549)
Q Consensus       367 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~-  442 (549)
                       .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... 
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred             hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence             1112245677788888866 444344444443 6778888888887765444444 5577888888888887544333 


Q ss_pred             hhhCCCCCCEEECCCCcccccCCccc-cCCCCCCeEeCCCCCCc
Q 046055          443 AISQLRDLSILNLSRNQLTGPIPTDM-QDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       443 ~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n~~~  485 (549)
                      ....+++|+.|++++|.++......+ ..+|.++...+..+.-.
T Consensus       501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            34456788888888887754433333 44666766666655444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-27  Score=228.69  Aligned_cols=248  Identities=18%  Similarity=0.148  Sum_probs=160.7

Q ss_pred             CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055          256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL  335 (549)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  335 (549)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+. +    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence            344444444444443333344444444444444444433221  44555555555555555421 1    2367777777


Q ss_pred             ecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccc-cCCCCCEEEccCCcccc
Q 046055          336 DHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISG  414 (549)
Q Consensus       336 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~  414 (549)
                      ++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+
T Consensus       107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            77777755443   246788888888888766666777788888888888888765555553 67888888888888875


Q ss_pred             cCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc-ccCCCC-C
Q 046055          415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN-GEVPSG-G  492 (549)
Q Consensus       415 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~-~  492 (549)
                      ..  ....+++|++|++++|.+++. +..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. +
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             cc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            42  233478888888888888854 444778888888888888888 45667888888888888888887 444432 5


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCCC
Q 046055          493 HFPAFDEASFAGNPNLCLPRNVTCL  517 (549)
Q Consensus       493 ~~~~l~~l~l~~n~~~~~~~~~~~~  517 (549)
                      .++.++.+++.+|+.+.......|.
T Consensus       260 ~~~~L~~l~l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          260 KNQRVQTVAKQTVKKLTGQNEEECT  284 (317)
T ss_dssp             TCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred             ccccceEEECCCchhccCCchhccC
Confidence            6677888888765544443333333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.4e-29  Score=264.83  Aligned_cols=433  Identities=15%  Similarity=0.121  Sum_probs=271.1

Q ss_pred             ccCCCcccEEEccCCCCCCcC---C-----------hhhhhCCCCCcEEEccCCCCcCCCCcccc-CCCCcCEEEccCC-
Q 046055           10 SKPKMSLKVLNISGNGFQDYF---P-----------GQIVVGMTELEVLDAFNNNFTGPLPVEIV-SLKNLKHLSFGGN-   73 (549)
Q Consensus        10 ~~~~~~L~~L~Ls~~~~~~~~---~-----------~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~ls~~-   73 (549)
                      +..+++|++|+++++......   +           ..++..+++|++|++++|.+++..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            456789999999998632111   1           23445789999999999988865555564 6899999999999 


Q ss_pred             cceec-cCccccCCCCCCEEEccCCCCccccchhcc----CCCCCceeecCCcc-ccCc-cCCccccCCCCCCEEEccCc
Q 046055           74 YFSGE-IPESYSEIQSLEYLGLNGIGLNGTAPVFLS----LLKNLREMYIGYFN-TYTG-GIPPEFGTLSKLRVLDMASC  146 (549)
Q Consensus        74 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~  146 (549)
                      .+.+. ++....++++|++|++++|.+....+..+.    .+++|++|+++++. .+.. .+...+..+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            44422 444455789999999999987765554443    67799999999843 1211 12222345799999999998


Q ss_pred             cCCccCCccccCCCCCCeEeccCcc-------ccccCCccccCCCCCCEE-eCCCCcCccccCccccCCCcCceeecccc
Q 046055          147 NISGEIPASLSQLKLLDALFLQMNK-------LTGHIHPELSGLISLTQL-DLSLNCLTGEVPESFSALKNLSLVQLFKN  218 (549)
Q Consensus       147 ~i~~~~~~~l~~l~~L~~L~l~~~~-------l~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  218 (549)
                      .-.+..+..+..+++|+.|.+..+.       +.+. +..+.++++|+.+ .+.+... ...+..+..+++|++|++++|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence            3222366677888999999966543       2221 2356777888888 3433222 133344445677888888777


Q ss_pred             cCccc-CCccCCCCCCccEEEccCcccccc-CCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          219 NLRGP-FPSFVGDYPNLEVLQVWGNNFTGE-LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       219 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      .+.+. +...+..+++|++|++++| +... .+.....+++|+.|++.++.-.+               ....+.+++..
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~  363 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQG  363 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHH
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHH
Confidence            75532 1222445677777777776 3221 22222346667777664321000               00011111110


Q ss_pred             Cccc-cCCCCCcEEEccCCcCcccCCccCC-CCCCCCEEEee--c----CcCcccc-----CccccCCCCCCEEEccCce
Q 046055          297 PEEL-GACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELD--H----NLLSGEI-----PENLSISDSLNQLKVAYNN  363 (549)
Q Consensus       297 ~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~--~----~~l~~~~-----~~~~~~~~~L~~L~l~~n~  363 (549)
                      ...+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++...     +..+..+++|++|++++ .
T Consensus       364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~  442 (594)
T 2p1m_B          364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L  442 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred             HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence            0111 2355666665555555443333332 46778888887  2    3333111     11245678899999977 5


Q ss_pred             ecccCCccccc-CCCCCEEEccCCcCCCCCcccc-ccCCCCCEEEccCCcccccCCc-ccccCCCCcEEECCCCcCcccc
Q 046055          364 IAGKIPPSIGN-LTNLNVLSLQNNRFNGELPEEM-FNLKVISLINVSSNNISGEIPT-SISGCISLTTVDFSRNSLSGEI  440 (549)
Q Consensus       364 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~i~~~~  440 (549)
                      +++.....+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.... ....+++|+.|++++|.++...
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  522 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA  522 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence            55443334443 7899999999998865555444 5689999999999998644333 3455899999999999996554


Q ss_pred             hhhh-hCCCCCCEEECCCCccc
Q 046055          441 PKAI-SQLRDLSILNLSRNQLT  461 (549)
Q Consensus       441 ~~~~-~~~~~L~~L~l~~n~i~  461 (549)
                      ...+ ..+++|+...+..+.-.
T Consensus       523 ~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          523 CKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             HHHHHHHCTTEEEEEECSSSCG
T ss_pred             HHHHHHhCCCCEEEEecCCCcc
Confidence            4445 56788877777766544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=7.4e-25  Score=204.28  Aligned_cols=207  Identities=19%  Similarity=0.199  Sum_probs=161.0

Q ss_pred             CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055          305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ  384 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  384 (549)
                      ..+.++++++.++ .+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3556666666666 4554332  567888888888877766677778888888888888876556667788888888888


Q ss_pred             CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055          385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      +|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            88887555666778888888888888888777777888888888888888888666666888888888888888888777


Q ss_pred             CccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCC
Q 046055          465 PTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNV  514 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~  514 (549)
                      +..+..+++|++|++++|++.+..+. ...+++|+.+++++||+.|.|...
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            77788888899999998888865554 356788888999999998888643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.1e-24  Score=204.81  Aligned_cols=208  Identities=23%  Similarity=0.208  Sum_probs=169.9

Q ss_pred             ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055          300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN  379 (549)
Q Consensus       300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  379 (549)
                      +..+++++++++.++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            455667777777777776 4554442  6788888888888877777788888888888888888754332  6788899


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055          380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ  459 (549)
Q Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  459 (549)
                      +|++++|.+. .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            9999999887 777788888999999999999987777788899999999999999987777778888999999999999


Q ss_pred             ccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCC
Q 046055          460 LTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       460 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      ++...+..+..+++|+.|++++|++...++.....++|+.+++++||+.|.|..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence            986666677889999999999999996666666778899999999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.2e-27  Score=224.88  Aligned_cols=259  Identities=17%  Similarity=0.145  Sum_probs=168.6

Q ss_pred             CCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcC
Q 046055          186 LTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS  265 (549)
Q Consensus       186 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  265 (549)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4444555555554444444556677777777777766555566667777777777777664332  56666677777776


Q ss_pred             CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC
Q 046055          266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP  345 (549)
Q Consensus       266 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  345 (549)
                      |.+.+.     ...++|+.|++++|                        .+.+..+.   .+++|++|++++|.+.+..+
T Consensus        90 n~l~~l-----~~~~~L~~L~l~~n------------------------~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQEL-----LVGPSIETLHAANN------------------------NISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEEE-----EECTTCCEEECCSS------------------------CCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             Cccccc-----cCCCCcCEEECCCC------------------------ccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            666522     12245555555554                        44322221   24567777777777766666


Q ss_pred             ccccCCCCCCEEEccCceecccCCccc-ccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCC
Q 046055          346 ENLSISDSLNQLKVAYNNIAGKIPPSI-GNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI  424 (549)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  424 (549)
                      ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|++.+ .+..+..++
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  214 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA  214 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccC
Confidence            566666777777777777775555444 3567788888888777633 32 2247778888888888774 344477788


Q ss_pred             CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc-ccCCccccCCCCCCeEeCCCC
Q 046055          425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT-GPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      +|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus       215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            8888888888887 45666777788888888888887 556667777788888888744

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-24  Score=204.33  Aligned_cols=216  Identities=19%  Similarity=0.191  Sum_probs=160.9

Q ss_pred             CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055          304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL  383 (549)
Q Consensus       304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  383 (549)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666677777666555556667777777777777777666667777778888888888887666677778888888888


Q ss_pred             cCCcCCCCCccccccCCCCCEEEccCCccccc-CCcccccCCCCcEEECCCCcCcccchhhhhCCCCCC----EEECCCC
Q 046055          384 QNNRFNGELPEEMFNLKVISLINVSSNNISGE-IPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLS----ILNLSRN  458 (549)
Q Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~----~L~l~~n  458 (549)
                      ++|.+.+..+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|++++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888755555677888888888888888753 477788888888888888888876666666666666    8888888


Q ss_pred             cccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 046055          459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCLPSI  520 (549)
Q Consensus       459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  520 (549)
                      .++...+..+. ..+|++|++++|.+.+.++.. ..+++|+.+++++||+.|.|+....+..|
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence            88866555444 347888888888888665554 66888888999999998888655444333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.1e-26  Score=221.36  Aligned_cols=246  Identities=22%  Similarity=0.260  Sum_probs=117.3

Q ss_pred             CCCccEEEccCccccccCCccccCCCCccEEECcCCcccc-cCCcccc-------CCCCccEEeccccccccCCCccccC
Q 046055          231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG-KIPRDLC-------KGERLKSLILMQNLFSGPIPEELGA  302 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~  302 (549)
                      .++|+++++++|.+  .+|..+...  ++.|++++|.+.. ..+..+.       .+++|++|++++|.+.+..+..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--  115 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL--  115 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS--
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH--
Confidence            44566666666666  344433322  6666666666532 2222222       34555555555555544433332  


Q ss_pred             CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCC-----CCCCEEEccCceecccCCcccccCCC
Q 046055          303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS-----DSLNQLKVAYNNIAGKIPPSIGNLTN  377 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~  377 (549)
                                          .+..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+++
T Consensus       116 --------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A          116 --------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             --------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             --------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence                                003444455555555544443 3333322     45555555555554444444555555


Q ss_pred             CCEEEccCCcCCCC--Ccccc--ccCCCCCEEEccCCccccc---CCcccccCCCCcEEECCCCcCcccch-hhhhCCCC
Q 046055          378 LNVLSLQNNRFNGE--LPEEM--FNLKVISLINVSSNNISGE---IPTSISGCISLTTVDFSRNSLSGEIP-KAISQLRD  449 (549)
Q Consensus       378 L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~  449 (549)
                      |++|++++|++.+.  .+..+  ..+++|++|++++|.+.+.   ....+..+++|++|++++|.+++..| ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            55555555554322  11222  4455555555555555411   11122344555555555555554332 23334455


Q ss_pred             CCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055          450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN  507 (549)
Q Consensus       450 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~  507 (549)
                      |+.|++++|+++ .+|..+.  ++|++|++++|++.+. |....+++|+.+++++|++
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred             CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence            555555555555 3343333  4555555555555543 4455555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1e-26  Score=221.63  Aligned_cols=255  Identities=18%  Similarity=0.202  Sum_probs=178.9

Q ss_pred             cccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccc-cCCcccc-------CCCCccEEECcCCcccccCCc
Q 046055          203 SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTG-ELPENLG-------RNRKLLLLDVSSNQIEGKIPR  274 (549)
Q Consensus       203 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~  274 (549)
                      .+...++|+.+++.+|.+  .+|..+..  .++.|++++|.+.. ..+..+.       .+++|++|++++|.+.+..|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            345668899999999998  45554433  38999999998853 4454444       689999999999999987777


Q ss_pred             cc--cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCC
Q 046055          275 DL--CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISD  352 (549)
Q Consensus       275 ~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  352 (549)
                      .+  ..+++|++|++++|.+.+. +..+..+.                   ...+++|++|++++|.+.+..+..+..++
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            66  7788888888888887755 44333320                   00125566666666666655556666666


Q ss_pred             CCCEEEccCceeccc--CCcc--cccCCCCCEEEccCCcCCCC--Cc-cccccCCCCCEEEccCCcccccCC-cccccCC
Q 046055          353 SLNQLKVAYNNIAGK--IPPS--IGNLTNLNVLSLQNNRFNGE--LP-EEMFNLKVISLINVSSNNISGEIP-TSISGCI  424 (549)
Q Consensus       353 ~L~~L~l~~n~~~~~--~~~~--~~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  424 (549)
                      +|++|++++|++.+.  .+..  +..+++|++|++++|.+++.  ++ ..+..+++|+.|++++|.+.+..+ ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            666666666665432  1222  36777888888888877621  11 233467888888888888876553 4456678


Q ss_pred             CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|++.+
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8888888888887 5565554  7888889998888855 54 7888888999999888873

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.7e-26  Score=227.77  Aligned_cols=245  Identities=19%  Similarity=0.163  Sum_probs=175.2

Q ss_pred             CCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEE
Q 046055          231 YPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR  310 (549)
Q Consensus       231 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  310 (549)
                      +++|++|++++|.+++..|..+..+++|+.|++++|.+.+..                        +  +..+++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~--l~~l~~L~~L~   86 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------------------D--LESLSTLRTLD   86 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------------------------E--CTTCTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------------------------c--cccCCCCCEEE
Confidence            345555555555555444445555555555555555554322                        1  44555555555


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCC
Q 046055          311 AMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG  390 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  390 (549)
                      +++|.+.+. +    ..++|+.|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus        87 Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A           87 LNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             ecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            555555421 1    226788888888888766544   34778889999998887777788888999999999999887


Q ss_pred             CCccccc-cCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          391 ELPEEMF-NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       391 ~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                      ..|..+. .+++|+.|++++|.+.+..+  ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.++. +|..+.
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~  234 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALR  234 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred             cChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhc
Confidence            7777775 78999999999999875532  3458899999999999986444 48888999999999999994 566788


Q ss_pred             CCCCCCeEeCCCCCCc-ccCCC-CCCCCCCCccccC-------CCCCCCCCCC
Q 046055          470 DMMSLTTLDLSYNNLN-GEVPS-GGHFPAFDEASFA-------GNPNLCLPRN  513 (549)
Q Consensus       470 ~l~~L~~L~l~~n~~~-~~~p~-~~~~~~l~~l~l~-------~n~~~~~~~~  513 (549)
                      .+++|+.|++++|++. +.+|. .+.++.++.+.+.       +++..|.+..
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            8999999999999998 33332 3567778878876       7888887643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.9e-23  Score=213.73  Aligned_cols=261  Identities=27%  Similarity=0.289  Sum_probs=139.4

Q ss_pred             CCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055          161 LLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW  240 (549)
Q Consensus       161 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  240 (549)
                      +++.|+++++.+..+ +..+.  ++|++|++++|.++. .|.   .+++|++|++++|++.. +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            466666666666633 33332  466666666666652 222   34556666666665552 222   34556666666


Q ss_pred             CccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055          241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI  320 (549)
Q Consensus       241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  320 (549)
                      +|.+++ +|.   .+++|+.|++++|.+.. +|..   +++                        |++|++++|.+. .+
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~------------------------L~~L~Ls~N~l~-~l  156 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG------------------------LQELSVSDNQLA-SL  156 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT------------------------CCEEECCSSCCS-CC
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC------------------------CCEEECcCCcCC-Cc
Confidence            655552 222   34455555555555542 2221   244                        444555544444 22


Q ss_pred             CccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCC
Q 046055          321 PAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLK  400 (549)
Q Consensus       321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  400 (549)
                      |.   .+++|+.|++++|.+.+..    ..+++|+.|++++|.+.+ +|.   ..++|+.|++++|.++ .+|..   ++
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             CC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CC
Confidence            22   2345555555555555322    234556666666666553 222   1355666666666665 33332   35


Q ss_pred             CCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCC
Q 046055          401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS  480 (549)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  480 (549)
                      +|+.|++++|.+.+ +|   ..+++|+.|++++|.++. +|.   .+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            66666666666653 33   334566666666666663 333   4466667777777666 455566666677777777


Q ss_pred             CCCCcccCC
Q 046055          481 YNNLNGEVP  489 (549)
Q Consensus       481 ~n~~~~~~p  489 (549)
                      +|++.+.+|
T Consensus       293 ~N~l~~~~~  301 (622)
T 3g06_A          293 GNPLSERTL  301 (622)
T ss_dssp             SCCCCHHHH
T ss_pred             CCCCCCcCH
Confidence            776665444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=6.6e-23  Score=211.05  Aligned_cols=265  Identities=25%  Similarity=0.306  Sum_probs=143.8

Q ss_pred             CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055          137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF  216 (549)
Q Consensus       137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  216 (549)
                      +++.|+++++.++ .+|..+.  ++|+.|++++|.+..+..    .+++|++|++++|.++. .|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4666666666666 4444443  567777777776664322    35677777777777663 333   45777777777


Q ss_pred             cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      +|.+... +.   .+++|+.|++++|.++. +|..   +++|++|++++|.+.+ ++.   .+++|+.|++++|.++...
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc
Confidence            7777643 32   45678888888887773 4442   4778888888887763 222   2355666666666555321


Q ss_pred             CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                          ..+++|+.|++++|.+.+ +|.   ..++|+.|++++|.+..                         ++.   .++
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-------------------------l~~---~~~  221 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-------------------------LPA---LPS  221 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-------------------------CCC---CCT
T ss_pred             ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-------------------------cCC---CCC
Confidence                233445555555554442 222   12344555555544442                         221   124


Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      +|+.|++++|.++ .+|   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            4555555555544 233   22345555555555554 2222   3445555555555555 344455555555555555


Q ss_pred             CCcccccCCcccc
Q 046055          457 RNQLTGPIPTDMQ  469 (549)
Q Consensus       457 ~n~i~~~~~~~l~  469 (549)
                      +|.+++..+..+.
T Consensus       293 ~N~l~~~~~~~l~  305 (622)
T 3g06_A          293 GNPLSERTLQALR  305 (622)
T ss_dssp             SCCCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHH
Confidence            5555544444333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.8e-23  Score=195.80  Aligned_cols=211  Identities=22%  Similarity=0.164  Sum_probs=163.8

Q ss_pred             CCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEc
Q 046055          280 ERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKV  359 (549)
Q Consensus       280 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  359 (549)
                      +++++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666665555556666677777777777776555556777788888888888887777777788888888888


Q ss_pred             cCceecccCCcccccCCCCCEEEccCCcCCCC-CccccccCCCCCEEEccCCcccccCCcccccCCCCc----EEECCCC
Q 046055          360 AYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGE-LPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT----TVDFSRN  434 (549)
Q Consensus       360 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n  434 (549)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++.+..+..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888866666788888999999999988753 578888899999999999998877677777777777    8999999


Q ss_pred             cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC
Q 046055          435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~  491 (549)
                      .+++..+..+. ..+|+.|++++|+++...+..+..+++|+.|++++|++....|..
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            99865555444 458999999999999777777888999999999999998765543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-24  Score=219.81  Aligned_cols=220  Identities=19%  Similarity=0.163  Sum_probs=188.4

Q ss_pred             CCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEE
Q 046055          278 KGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQL  357 (549)
Q Consensus       278 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  357 (549)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..     ..++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            34477888888887777766778888889999999998875554  788999999999999988553     23899999


Q ss_pred             EccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccc-cCCCCcEEECCCCcC
Q 046055          358 KVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS-GCISLTTVDFSRNSL  436 (549)
Q Consensus       358 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~i  436 (549)
                      ++++|.+.+..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+. .+++|+.|+|++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999866554   468899999999999988888899999999999999999987888776 799999999999999


Q ss_pred             cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCC
Q 046055          437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCL  510 (549)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~  510 (549)
                      ++..+  ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+.++..+.+++|+.+++++|++.|.
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence            86532  3468999999999999996555 58899999999999999998777778899999999999999964

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.5e-22  Score=188.61  Aligned_cols=185  Identities=20%  Similarity=0.215  Sum_probs=129.8

Q ss_pred             CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055          304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL  383 (549)
Q Consensus       304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  383 (549)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            34555666666555444445566666677777666666555555566677777777777776555556677777777777


Q ss_pred             cCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055          384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP  463 (549)
Q Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~  463 (549)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++..
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            77777756666677777777888877777755555677778888888888888766666677778888888888888766


Q ss_pred             CCccccCCCCCCeEeCCCCCCcccC
Q 046055          464 IPTDMQDMMSLTTLDLSYNNLNGEV  488 (549)
Q Consensus       464 ~~~~l~~l~~L~~L~l~~n~~~~~~  488 (549)
                      .+..+..+++|+.|++++|++....
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CHHHhccccCCCEEEecCCCeeCCC
Confidence            6666777888888888888776433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6e-22  Score=186.01  Aligned_cols=203  Identities=20%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             ccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCC
Q 046055          252 LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLK  331 (549)
Q Consensus       252 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  331 (549)
                      +..+++++.++++++.+. .+|..+.  +.++.|++++|.+....+                        ..+..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~------------------------~~~~~l~~L~   58 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL------------------------ATLMPYTRLT   58 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG------------------------GGGTTCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH------------------------HHhhcCCCCC
Confidence            344556666666666655 2333221  345555555555544433                        4444455555


Q ss_pred             EEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCc
Q 046055          332 MIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN  411 (549)
Q Consensus       332 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (549)
                      +|++++|.+.+..+.  ..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus        59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence            555555555433221  34455555555555555 344455556666666666666654444555666666666666666


Q ss_pred             ccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       412 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      +....+..|..+++|+.|++++|+++...+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            65554555556666666666666666444445556666666666666666 44455555556666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.3e-22  Score=187.55  Aligned_cols=204  Identities=16%  Similarity=0.144  Sum_probs=146.3

Q ss_pred             cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055          277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ  356 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  356 (549)
                      ..+++|+.|++.++.+...  ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3445555555555555432  235556666666666666653 2 35667777777888777777666666777778888


Q ss_pred             EEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055          357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL  436 (549)
Q Consensus       357 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i  436 (549)
                      |++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            88888887766666677788888888888888755566667788888888888888766666677788888888888888


Q ss_pred             cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC
Q 046055          437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~  491 (549)
                      ++..+..+..+++|+.|++++|.+..       .+++|+.++++.|.+.+.+|..
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            87767777788888888888887762       3556888888888888777754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.1e-22  Score=182.99  Aligned_cols=198  Identities=16%  Similarity=0.207  Sum_probs=156.2

Q ss_pred             CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCc-CccccCccccCCCCCCEEEccC-ceecccCCcccccCCCCCEEE
Q 046055          305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNL-LSGEIPENLSISDSLNQLKVAY-NNIAGKIPPSIGNLTNLNVLS  382 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~  382 (549)
                      +++.|++.+|++++..+..+..+++|++|++++|. +..+.+..+..+++|++|++++ |.+.+..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777775555567778888888888886 7767666778888888888887 888866667788888899999


Q ss_pred             ccCCcCCCCCccccccCCCCC---EEEccCC-cccccCCcccccCCCCc-EEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055          383 LQNNRFNGELPEEMFNLKVIS---LINVSSN-NISGEIPTSISGCISLT-TVDFSRNSLSGEIPKAISQLRDLSILNLSR  457 (549)
Q Consensus       383 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  457 (549)
                      +++|.+++ +|. +..+++|+   .|++++| .+.+..+..|..+++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            99888874 565 77788887   9999999 88766667788899999 9999999998544445555 8899999999


Q ss_pred             Cc-ccccCCccccCC-CCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055          458 NQ-LTGPIPTDMQDM-MSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN  507 (549)
Q Consensus       458 n~-i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~  507 (549)
                      |+ ++...+..+..+ ++|+.|++++|++.+. |.. .++.++.+.+.++..
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT-TCTTCSEEECTTC--
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh-HhccCceeeccCccC
Confidence            95 887777788888 8999999999999854 433 788999998887753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.7e-21  Score=179.31  Aligned_cols=181  Identities=20%  Similarity=0.233  Sum_probs=139.7

Q ss_pred             CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055          304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL  383 (549)
Q Consensus       304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  383 (549)
                      ...+++++.++.+. .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34667888888776 5665443  57888888888888777777778888888888888888777777788888888888


Q ss_pred             cCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055          384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP  463 (549)
Q Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~  463 (549)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            88888766666677788888888888888766666677788888888888888766666777788888888888888866


Q ss_pred             CCccccCCCCCCeEeCCCCCCccc
Q 046055          464 IPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       464 ~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      .+..+..+++|+.|++++|++...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            666777788888888888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.3e-23  Score=204.70  Aligned_cols=254  Identities=16%  Similarity=0.189  Sum_probs=138.8

Q ss_pred             ecccccCcccCCccCCCCCCccEEEccCccccccCC----ccccCCC-CccEEECcCCcccccCCccccCCCCccEEecc
Q 046055          214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP----ENLGRNR-KLLLLDVSSNQIEGKIPRDLCKGERLKSLILM  288 (549)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  288 (549)
                      .++.+.+.+.++..+...++|++|++++|.++...+    ..+..++ +|++|++++|.+.+..+..+..+         
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~---------   74 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI---------   74 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH---------
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH---------
Confidence            344455544444444444445555555555553333    3344444 45555555555544333333332         


Q ss_pred             ccccccCCCccccC-CCCCcEEEccCCcCcccCCcc----CCCC-CCCCEEEeecCcCccccCccc----cC-CCCCCEE
Q 046055          289 QNLFSGPIPEELGA-CESLTKFRAMKNQLNGTIPAG----IFNL-PLLKMIELDHNLLSGEIPENL----SI-SDSLNQL  357 (549)
Q Consensus       289 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~~----~~-~~~L~~L  357 (549)
                                 +.. +++|++|++++|.+.+..+..    +..+ ++|++|++++|.+.+..+..+    .. +.+|++|
T Consensus        75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  143 (362)
T 3goz_A           75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL  143 (362)
T ss_dssp             -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred             -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence                       001 145555555555554333321    2233 566666666666655444332    22 3467777


Q ss_pred             EccCceecccC----CcccccCC-CCCEEEccCCcCCCCCccccc----cC-CCCCEEEccCCccccc----CCccccc-
Q 046055          358 KVAYNNIAGKI----PPSIGNLT-NLNVLSLQNNRFNGELPEEMF----NL-KVISLINVSSNNISGE----IPTSISG-  422 (549)
Q Consensus       358 ~l~~n~~~~~~----~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~~~-  422 (549)
                      ++++|.+++..    +..+..++ +|++|++++|.+++..+..+.    .. ++|+.|++++|.+.+.    ++..+.. 
T Consensus       144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~  223 (362)
T 3goz_A          144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI  223 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred             EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence            77777766432    22333444 777777777777655554333    33 4777777777777642    2333444 


Q ss_pred             CCCCcEEECCCCcCcccch----hhhhCCCCCCEEECCCCccccc-------CCccccCCCCCCeEeCCCCCCccc
Q 046055          423 CISLTTVDFSRNSLSGEIP----KAISQLRDLSILNLSRNQLTGP-------IPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       423 ~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      .++|++|++++|.+++..+    ..+..+++|+.|++++|.+...       ++..+..+++|+.||+++|++...
T Consensus       224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3577888888887775433    3345667788888888874322       223556677788888888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=9.6e-22  Score=181.01  Aligned_cols=157  Identities=21%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055          305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ  384 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  384 (549)
                      +++.|++.+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            45555555555544444444445555555555555554444444445555555555555544444444455555555555


Q ss_pred             CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      +|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            55554333333444555555555555554433334445555555555555555444444444555555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.6e-21  Score=180.31  Aligned_cols=228  Identities=23%  Similarity=0.290  Sum_probs=173.8

Q ss_pred             cccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEc
Q 046055           15 SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGL   94 (549)
Q Consensus        15 ~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l   94 (549)
                      .+..+++..+.+.+...   ...+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+ . ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCcccccccc---cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence            34445555665554322   2256788888888887763 2 347778888888888888764 2 36777888888888


Q ss_pred             cCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccc
Q 046055           95 NGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTG  174 (549)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~  174 (549)
                      ++|.+....+..++.+++|++|++++ +.+....+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            88888877777778888888888887 66666666667888888888888888886666667888889999998888887


Q ss_pred             cCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccC
Q 046055          175 HIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR  254 (549)
Q Consensus       175 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  254 (549)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.       +.+++++.+++..|.+++.+|..++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence            77777788889999999999888777777888899999999888765       34678888999999988888877765


Q ss_pred             CCC
Q 046055          255 NRK  257 (549)
Q Consensus       255 ~~~  257 (549)
                      ++.
T Consensus       245 ~~~  247 (272)
T 3rfs_A          245 VAP  247 (272)
T ss_dssp             BCG
T ss_pred             cCC
Confidence            543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.3e-23  Score=206.92  Aligned_cols=189  Identities=17%  Similarity=0.217  Sum_probs=130.3

Q ss_pred             cCCCCCcEEEccCCcCcc----cCCccCCCCCCCCEEEeecCcCccccCccccC----C---------CCCCEEEccCce
Q 046055          301 GACESLTKFRAMKNQLNG----TIPAGIFNLPLLKMIELDHNLLSGEIPENLSI----S---------DSLNQLKVAYNN  363 (549)
Q Consensus       301 ~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~----~---------~~L~~L~l~~n~  363 (549)
                      ..+++|++|++++|.+.+    .++..+..+++|++|++++|.+....+..+..    +         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            456666666666666654    24445566777777777777775443333322    2         778888888888


Q ss_pred             ec-ccCC---cccccCCCCCEEEccCCcCCC-----CCccccccCCCCCEEEccCCccc----ccCCcccccCCCCcEEE
Q 046055          364 IA-GKIP---PSIGNLTNLNVLSLQNNRFNG-----ELPEEMFNLKVISLINVSSNNIS----GEIPTSISGCISLTTVD  430 (549)
Q Consensus       364 ~~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~  430 (549)
                      ++ ...+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    ..++..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            76 2233   356677788888888887752     12336677888888888888875    34566777888888888


Q ss_pred             CCCCcCccc----chhhhhC--CCCCCEEECCCCcccc----cCCccc-cCCCCCCeEeCCCCCCcccCC
Q 046055          431 FSRNSLSGE----IPKAISQ--LRDLSILNLSRNQLTG----PIPTDM-QDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       431 L~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      |++|.+++.    ++..+..  +++|+.|++++|.++.    .++..+ ..+++|++|++++|++.+..+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888888765    4555533  7888888888888886    355555 557888888888888875543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=8.8e-23  Score=197.17  Aligned_cols=250  Identities=14%  Similarity=0.207  Sum_probs=134.5

Q ss_pred             ccEEEccCccccccCCccccCC--CCccEEECcCCcccccCCccccCCCCccEEeccccccccC-CCccccCCCCCcEEE
Q 046055          234 LEVLQVWGNNFTGELPENLGRN--RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP-IPEELGACESLTKFR  310 (549)
Q Consensus       234 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  310 (549)
                      ++.++++++.+.   +..+..+  ++++.+++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455555555443   1223333  5566666666665544332 34455666666666554432 333455556666666


Q ss_pred             ccCCcCcccCCccCCCCCCCCEEEeecC-cCccc-cCccccCCCCCCEEEccCc-eeccc-CCcccccCC-CCCEEEccC
Q 046055          311 AMKNQLNGTIPAGIFNLPLLKMIELDHN-LLSGE-IPENLSISDSLNQLKVAYN-NIAGK-IPPSIGNLT-NLNVLSLQN  385 (549)
Q Consensus       311 l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~  385 (549)
                      +.+|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            6666555445555555666666666666 44432 3333455566666666666 55532 344455666 666666666


Q ss_pred             Cc--CC-CCCccccccCCCCCEEEccCCc-ccccCCcccccCCCCcEEECCCCc-CcccchhhhhCCCCCCEEECCCCcc
Q 046055          386 NR--FN-GELPEEMFNLKVISLINVSSNN-ISGEIPTSISGCISLTTVDFSRNS-LSGEIPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       386 n~--l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i  460 (549)
                      |.  ++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i  283 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V  283 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence            63  32 2334455566666666666666 444455556666666666666663 33222234556666666666666 3


Q ss_pred             cccCCccccCC-CCCCeEeCCCCCCcccCCCC
Q 046055          461 TGPIPTDMQDM-MSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       461 ~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~  491 (549)
                      ...   .+..+ .+++.|++++|.+.+..|..
T Consensus       284 ~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          284 PDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             CTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             CHH---HHHHHHhhCcceEEecccCccccCCc
Confidence            321   22222 22555556666666555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=186.95  Aligned_cols=154  Identities=19%  Similarity=0.265  Sum_probs=75.7

Q ss_pred             CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceeccc----CCcccccCCCCCEEEccCCcCCCCCcc----ccc
Q 046055          326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK----IPPSIGNLTNLNVLSLQNNRFNGELPE----EMF  397 (549)
Q Consensus       326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~  397 (549)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.    .+..+..+++|++|++++|.++ .++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            455556666666655555555555555555555555554321    1122345555666666666554 2222    123


Q ss_pred             cCCCCCEEEccCCcccccCCcccccC---CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCC
Q 046055          398 NLKVISLINVSSNNISGEIPTSISGC---ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSL  474 (549)
Q Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  474 (549)
                      .+++|++|++++|++.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            44555555555555554444444333   35555555555555 3333332  4555555555555522 21 3444555


Q ss_pred             CeEeCCCCCCc
Q 046055          475 TTLDLSYNNLN  485 (549)
Q Consensus       475 ~~L~l~~n~~~  485 (549)
                      +.|++++|++.
T Consensus       297 ~~L~L~~N~l~  307 (310)
T 4glp_A          297 DNLTLDGNPFL  307 (310)
T ss_dssp             SCEECSSTTTS
T ss_pred             cEEECcCCCCC
Confidence            55555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=9.4e-23  Score=196.96  Aligned_cols=234  Identities=18%  Similarity=0.278  Sum_probs=154.1

Q ss_pred             CCccccccCCCcccEEEccCCCCCCcCChhhhhCC--CCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cC
Q 046055            4 DNWSSLSKPKMSLKVLNISGNGFQDYFPGQIVVGM--TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IP   80 (549)
Q Consensus         4 ~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~   80 (549)
                      ..|..+......++.++++++.+.+   .. +..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+. .+
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~~~~~---~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGKNLHP---DV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTCBCCH---HH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred             HHHHHHhcCchhheeeccccccCCH---HH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence            3466665555568999999987752   22 3355  7899999999988865444 66789999999999988754 67


Q ss_pred             ccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCc-cCCccccCCCCCCEEEccCc-cCCcc-CCcccc
Q 046055           81 ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTG-GIPPEFGTLSKLRVLDMASC-NISGE-IPASLS  157 (549)
Q Consensus        81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~-~i~~~-~~~~l~  157 (549)
                      ..+..+++|++|++++|.+....+..++.+++|++|+++++..+.+ .++..+..+++|++|++++| .+++. .+..+.
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            7788889999999999988877777788888888888887434544 24555677788888888888 77643 345566


Q ss_pred             CCC-CCCeEeccCcc--cc-ccCCccccCCCCCCEEeCCCCc-CccccCccccCCCcCceeeccccc-CcccCCccCCCC
Q 046055          158 QLK-LLDALFLQMNK--LT-GHIHPELSGLISLTQLDLSLNC-LTGEVPESFSALKNLSLVQLFKNN-LRGPFPSFVGDY  231 (549)
Q Consensus       158 ~l~-~L~~L~l~~~~--l~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~  231 (549)
                      .++ +|++|++++|.  +. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            666 77777777763  32 1122334456666666666666 444444455555666666665553 211111123345


Q ss_pred             CCccEEEccCc
Q 046055          232 PNLEVLQVWGN  242 (549)
Q Consensus       232 ~~L~~L~l~~~  242 (549)
                      ++|++|++++|
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            55555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=8.9e-23  Score=198.74  Aligned_cols=247  Identities=17%  Similarity=0.174  Sum_probs=171.8

Q ss_pred             CcCCcccccCCccccCCCCccEEeccccccccCCC----ccccCCC-CCcEEEccCCcCcccCCccCCC-----CCCCCE
Q 046055          263 VSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIP----EELGACE-SLTKFRAMKNQLNGTIPAGIFN-----LPLLKM  332 (549)
Q Consensus       263 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~  332 (549)
                      ++.|.+.+.++..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..     +++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            33444443333333333334444444444443333    3445555 6677777777666554444443     289999


Q ss_pred             EEeecCcCccccCcc----ccCC-CCCCEEEccCceecccCCccc----cc-CCCCCEEEccCCcCCCCCcc----cccc
Q 046055          333 IELDHNLLSGEIPEN----LSIS-DSLNQLKVAYNNIAGKIPPSI----GN-LTNLNVLSLQNNRFNGELPE----EMFN  398 (549)
Q Consensus       333 L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~l~~~~~~----~~~~  398 (549)
                      |++++|.+.+..+..    +... ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..+.    .+..
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA  164 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence            999999998766653    3344 899999999999986655443    33 36999999999999855443    3445


Q ss_pred             CC-CCCEEEccCCcccccCCccc----ccC-CCCcEEECCCCcCccc----chhhhhC-CCCCCEEECCCCcccccCC--
Q 046055          399 LK-VISLINVSSNNISGEIPTSI----SGC-ISLTTVDFSRNSLSGE----IPKAISQ-LRDLSILNLSRNQLTGPIP--  465 (549)
Q Consensus       399 l~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~L~~n~i~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~--  465 (549)
                      .+ +|+.|++++|.+.+..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|+.|++++|.+++..+  
T Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence            55 99999999999986665443    445 5999999999999863    4555655 4699999999999986554  


Q ss_pred             --ccccCCCCCCeEeCCCCCCcccC--------CCCCCCCCCCccccCCCCCCC
Q 046055          466 --TDMQDMMSLTTLDLSYNNLNGEV--------PSGGHFPAFDEASFAGNPNLC  509 (549)
Q Consensus       466 --~~l~~l~~L~~L~l~~n~~~~~~--------p~~~~~~~l~~l~l~~n~~~~  509 (549)
                        ..+..+++|+.|++++|.+....        .....+++|+.+++++|+...
T Consensus       245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence              34577899999999999944222        234567889999999998654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.7e-21  Score=175.83  Aligned_cols=197  Identities=15%  Similarity=0.170  Sum_probs=140.8

Q ss_pred             CccEEeccccccccCCCccccCCCCCcEEEccCCc-CcccCCccCCCCCCCCEEEeec-CcCccccCccccCCCCCCEEE
Q 046055          281 RLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-LNGTIPAGIFNLPLLKMIELDH-NLLSGEIPENLSISDSLNQLK  358 (549)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~  358 (549)
                      +++.|++++|.++...+..+..+++|++|++.+|+ +....+..+..+++|++|++++ |.+.+..+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55556666555555555556666667777777665 5544444566777778888877 777766666777777888888


Q ss_pred             ccCceecccCCcccccCCCCC---EEEccCC-cCCCCCccccccCCCCC-EEEccCCcccccCCcccccCCCCcEEECCC
Q 046055          359 VAYNNIAGKIPPSIGNLTNLN---VLSLQNN-RFNGELPEEMFNLKVIS-LINVSSNNISGEIPTSISGCISLTTVDFSR  433 (549)
Q Consensus       359 l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  433 (549)
                      +++|.+.+ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|.+....+..+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            88887774 444 67777777   8888888 77755556677888888 8888888887444445555 7888899988


Q ss_pred             Cc-CcccchhhhhCC-CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCC
Q 046055          434 NS-LSGEIPKAISQL-RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN  483 (549)
Q Consensus       434 n~-i~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  483 (549)
                      |+ +++..+..|..+ ++|+.|++++|+++...+.   .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            85 876666778888 8899999999988844333   56788888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=184.92  Aligned_cols=201  Identities=22%  Similarity=0.264  Sum_probs=164.7

Q ss_pred             CCCCcEEEccCCcCcccCCccC--CCCCCCCEEEeecCcCccccC----ccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          303 CESLTKFRAMKNQLNGTIPAGI--FNLPLLKMIELDHNLLSGEIP----ENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3457777777777777777766  778899999999999886544    2334688999999999999988888999999


Q ss_pred             CCCEEEccCCcCCCC--C--ccccccCCCCCEEEccCCcccccCCc----ccccCCCCcEEECCCCcCcccchhhhhCC-
Q 046055          377 NLNVLSLQNNRFNGE--L--PEEMFNLKVISLINVSSNNISGEIPT----SISGCISLTTVDFSRNSLSGEIPKAISQL-  447 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~i~~~~~~~~~~~-  447 (549)
                      +|++|++++|++.+.  .  +..+..+++|++|++++|.++. .+.    .+..+++|++|++++|.+++..|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999997532  2  2334688999999999999963 232    35688999999999999998777777666 


Q ss_pred             --CCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCC
Q 046055          448 --RDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNL  508 (549)
Q Consensus       448 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~  508 (549)
                        ++|++|++++|+++ .+|..+.  ++|++|++++|++.+. |....+++|+.+++++|++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence              79999999999999 5666664  7999999999999954 66788999999999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.2e-21  Score=181.49  Aligned_cols=207  Identities=17%  Similarity=0.251  Sum_probs=169.5

Q ss_pred             ECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCc
Q 046055          262 DVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLS  341 (549)
Q Consensus       262 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~  341 (549)
                      .+..+.+.+.  .....+++|+.|+++++.+....  .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.
T Consensus        25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCce--ecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence            3444444432  23456789999999999888642  588899999999999999844 33 888999999999999988


Q ss_pred             cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccc
Q 046055          342 GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSIS  421 (549)
Q Consensus       342 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (549)
                      +.  ..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+  +.
T Consensus        99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~  170 (308)
T 1h6u_A           99 NV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LA  170 (308)
T ss_dssp             CC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             Cc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hc
Confidence            64  3578889999999999999853 3 388999999999999999744 33 7889999999999999985433  88


Q ss_pred             cCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          422 GCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       422 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|++++..  .+..+++|+.|++++|++.+
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            99999999999999986543  788999999999999998554  38889999999999999975

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=6.4e-23  Score=201.87  Aligned_cols=245  Identities=18%  Similarity=0.257  Sum_probs=178.3

Q ss_pred             cCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCC---cCcccCCcc
Q 046055          247 ELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKN---QLNGTIPAG  323 (549)
Q Consensus       247 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~  323 (549)
                      .++..+..+++|+.|++++|.+.+..+..+                    ...+..+++|++|++++|   ++.+.+|..
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~   82 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWL--------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEA   82 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHH--------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHH
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHH--------------------HHHHHhCCCccEEeCcccccCccccchhHH
Confidence            344445556666666666666554322211                    112334445555555543   222233333


Q ss_pred             -------CCCCCCCCEEEeecCcCcc----ccCccccCCCCCCEEEccCceecccCCc----ccccC---------CCCC
Q 046055          324 -------IFNLPLLKMIELDHNLLSG----EIPENLSISDSLNQLKVAYNNIAGKIPP----SIGNL---------TNLN  379 (549)
Q Consensus       324 -------~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~---------~~L~  379 (549)
                             +..+++|++|++++|.+..    ..+..+..+++|++|++++|.++...+.    .+..+         ++|+
T Consensus        83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A           83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence                   3688999999999999987    3555678899999999999999744333    33344         8999


Q ss_pred             EEEccCCcCCC-CCc---cccccCCCCCEEEccCCcccc-----cCCcccccCCCCcEEECCCCcCc----ccchhhhhC
Q 046055          380 VLSLQNNRFNG-ELP---EEMFNLKVISLINVSSNNISG-----EIPTSISGCISLTTVDFSRNSLS----GEIPKAISQ  446 (549)
Q Consensus       380 ~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~i~----~~~~~~~~~  446 (549)
                      +|++++|.+.. ..+   ..+..+++|+.|++++|.+..     ..+..+..+++|+.|+|++|.++    ..++..+..
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence            99999999873 344   456688999999999999873     23337889999999999999996    467788899


Q ss_pred             CCCCCEEECCCCccccc----CCccccC--CCCCCeEeCCCCCCcc----cCCCC--CCCCCCCccccCCCCCCCCC
Q 046055          447 LRDLSILNLSRNQLTGP----IPTDMQD--MMSLTTLDLSYNNLNG----EVPSG--GHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       447 ~~~L~~L~l~~n~i~~~----~~~~l~~--l~~L~~L~l~~n~~~~----~~p~~--~~~~~l~~l~l~~n~~~~~~  511 (549)
                      +++|+.|++++|.++..    ++..+..  +++|++|++++|.+..    .+|..  ..+++|+.+++++|+.....
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            99999999999999865    4555533  8999999999999997    35543  45799999999999876543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2e-20  Score=177.48  Aligned_cols=195  Identities=22%  Similarity=0.301  Sum_probs=166.7

Q ss_pred             ccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCC
Q 046055          252 LGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLK  331 (549)
Q Consensus       252 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  331 (549)
                      ...+++|+.|+++++.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            4467899999999999875 33 67889999999999999986544  8999999999999999874 3 3688899999


Q ss_pred             EEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCc
Q 046055          332 MIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN  411 (549)
Q Consensus       332 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (549)
                      +|++++|.+.+..  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            9999999998653  37889999999999999985443  8899999999999999984 444 8899999999999999


Q ss_pred             ccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055          412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG  462 (549)
Q Consensus       412 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~  462 (549)
                      +.+..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.++.
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            985443  889999999999999998654  38889999999999999984

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.6e-19  Score=162.18  Aligned_cols=137  Identities=23%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      ++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.++...+..|..+++|+.|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            44555555555443333344445555555555555554445555555555555555555554444445555555555555


Q ss_pred             CCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCC
Q 046055          457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      +|+++...+..|..+++|+.|++++|.+.+..+. ...+++|+.+++++||+.|+|..
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            5555555555555555555555555555544443 24455566666666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=4.4e-19  Score=171.64  Aligned_cols=240  Identities=19%  Similarity=0.170  Sum_probs=136.8

Q ss_pred             cEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc-CCCccccCCCCCcE-EEcc
Q 046055          235 EVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG-PIPEELGACESLTK-FRAM  312 (549)
Q Consensus       235 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~  312 (549)
                      +.++.++++++ .+|..+  .+++++|++++|++....+..|..+++|++|++++|.+.+ ....+|.+++++.+ +...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45667777776 455544  3567777777777775544556677777777777776644 33345666666554 3444


Q ss_pred             CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccC-ceecccCCcccccCC-CCCEEEccCCcCCC
Q 046055          313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAY-NNIAGKIPPSIGNLT-NLNVLSLQNNRFNG  390 (549)
Q Consensus       313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~  390 (549)
                      .|++....+..+..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            5666655555666667777777777766655544444445556666644 344444444444443 4566666666665 


Q ss_pred             CCccccccCCCCCEEEccC-CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          391 ELPEEMFNLKVISLINVSS-NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       391 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                      .++.......+|+.+++.+ |.+....+..|..+++|++|++++|+++...+..   +.+|+.|.+.++.--..+| .+.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            3444444445566666653 4444333345666666666666666666332222   3445555554443332444 355


Q ss_pred             CCCCCCeEeCCCC
Q 046055          470 DMMSLTTLDLSYN  482 (549)
Q Consensus       470 ~l~~L~~L~l~~n  482 (549)
                      .+++|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            6666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.2e-19  Score=176.24  Aligned_cols=181  Identities=22%  Similarity=0.204  Sum_probs=111.2

Q ss_pred             CEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc-cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055          331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG-NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS  409 (549)
Q Consensus       331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (549)
                      +.++++++.+..+ |..+  ...++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3455555555532 2222  23456666666666655555555 666666666666666655555666666777777777


Q ss_pred             CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc---cCCCCCCeEeCCCCCCcc
Q 046055          410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM---QDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~l~~n~~~~  486 (549)
                      |++....+..|..+++|+.|+|++|.+....+..|..+++|+.|++++|+++...+..+   ..+++|+.|++++|++..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            76665555566667777777777777766666667777777777777777774444444   456777777777777764


Q ss_pred             cCCC-CCCCCC--CCccccCCCCCCCCCCCC
Q 046055          487 EVPS-GGHFPA--FDEASFAGNPNLCLPRNV  514 (549)
Q Consensus       487 ~~p~-~~~~~~--l~~l~l~~n~~~~~~~~~  514 (549)
                      ..+. ...++.  ++.+++.+||+.|+|+..
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~  208 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLY  208 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred             cCHHHhhhccHhhcceEEecCCCccCCcCcH
Confidence            3321 123443  367788888888877643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=9.5e-19  Score=169.30  Aligned_cols=241  Identities=12%  Similarity=0.038  Sum_probs=183.3

Q ss_pred             ceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCC-ccccCCCCccE-Eecc
Q 046055          211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP-RDLCKGERLKS-LILM  288 (549)
Q Consensus       211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~  288 (549)
                      ++++.++++++ .+|..+  .+++++|++++|.++...+..|.++++|++|++++|++.+.++ ..+..++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45677777777 455544  3689999999999996666678999999999999999865444 45667777765 5666


Q ss_pred             ccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeec-CcCccccCccccCC-CCCCEEEccCceecc
Q 046055          289 QNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDH-NLLSGEIPENLSIS-DSLNQLKVAYNNIAG  366 (549)
Q Consensus       289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~  366 (549)
                      .|.+....+..+..+++|+.+++.+|++....+..+....++..+++.+ +.+....+..+... ..++.|++++|.+.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            7888888888999999999999999999866666666777888999976 45665655566555 468899999999985


Q ss_pred             cCCcccccCCCCCEEEccC-CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhh
Q 046055          367 KIPPSIGNLTNLNVLSLQN-NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAIS  445 (549)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  445 (549)
                      ..+..| ...+|+++++.+ |.++...+..|..+++|+.|++++|+++...+..   +.+|+.|.+.++.-.+.+| .+.
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            555444 457899999985 5666333456889999999999999998544434   4567777776665444666 478


Q ss_pred             CCCCCCEEECCCCc
Q 046055          446 QLRDLSILNLSRNQ  459 (549)
Q Consensus       446 ~~~~L~~L~l~~n~  459 (549)
                      .+++|+.+++.++.
T Consensus       244 ~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          244 KLVALMEASLTYPS  257 (350)
T ss_dssp             TCCSCCEEECSCHH
T ss_pred             hCcChhhCcCCCCc
Confidence            89999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=6.9e-19  Score=156.96  Aligned_cols=175  Identities=18%  Similarity=0.182  Sum_probs=127.5

Q ss_pred             cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCC
Q 046055          307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN  386 (549)
Q Consensus       307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  386 (549)
                      +.++..++.++ .+|..+  .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34455555544 334332  357788888888877666666777788888888888877655566777888888888888


Q ss_pred             cCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc
Q 046055          387 RFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT  466 (549)
Q Consensus       387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  466 (549)
                      .+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.     
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            887555556777888888888888887666666778888888888888888666666777888888888888765     


Q ss_pred             cccCCCCCCeEeCCCCCCcccCCCC
Q 046055          467 DMQDMMSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       467 ~l~~l~~L~~L~l~~n~~~~~~p~~  491 (549)
                        ..+++|++|+++.|.+.+.+|..
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeecc
Confidence              23567888888888888777753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=8.5e-19  Score=157.39  Aligned_cols=153  Identities=20%  Similarity=0.244  Sum_probs=91.5

Q ss_pred             CEEEeecCcCccccCccccCCCCCCEEEccCceecccCC-cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055          331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP-PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS  409 (549)
Q Consensus       331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (549)
                      +.++++++.+..+ |..+  ...+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4677777766643 3322  2445666666666665433 3456666666666666666644444566666666666666


Q ss_pred             CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      |.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++...|..+..+++|+.|++++|++..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            66665555556666666666666666665555556666666666666666665555556666666666666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.9e-18  Score=156.21  Aligned_cols=153  Identities=20%  Similarity=0.238  Sum_probs=87.0

Q ss_pred             CCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055          330 LKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS  409 (549)
Q Consensus       330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (549)
                      .+.++.+++.+..+ |..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45566666666533 2222  25666666666666655555566666666666666666533334455566666666666


Q ss_pred             CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      |.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            6665444444555666666666666665 445555555666666666666654444455555555555555555553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.9e-18  Score=153.95  Aligned_cols=134  Identities=19%  Similarity=0.293  Sum_probs=72.7

Q ss_pred             CCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEEC
Q 046055          352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDF  431 (549)
Q Consensus       352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  431 (549)
                      +.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+....+..|..+++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            34555555555554444444555555555555555555444555555555555555555555443444555555555555


Q ss_pred             CCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       432 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      ++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            555555555555555556666666666655444445555556666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=4.2e-18  Score=152.87  Aligned_cols=152  Identities=21%  Similarity=0.243  Sum_probs=86.9

Q ss_pred             cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccC-ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccC
Q 046055          307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIP-ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN  385 (549)
Q Consensus       307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  385 (549)
                      +.++++++.++ .+|..+  .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35555555554 344333  2345566666666655433 3345556666666666666555555556666666666666


Q ss_pred             CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          386 NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6665444555555666666666666665555555666666666666666665555555666666666666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=7.2e-18  Score=150.35  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=73.0

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccC
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNG   96 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~   96 (549)
                      +.++.+++.+.. +|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            445555555543 33322   24566666666666544444455666666666666655544344455555555555555


Q ss_pred             CCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccC
Q 046055           97 IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHI  176 (549)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~  176 (549)
                      |.+....+..+                         ..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus        86 n~l~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           86 NQLQSLPNGVF-------------------------DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             SCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCccCHhHh-------------------------cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            55543333333                         33444444444444444333333444444444444444444333


Q ss_pred             CccccCCCCCCEEeCCCCc
Q 046055          177 HPELSGLISLTQLDLSLNC  195 (549)
Q Consensus       177 ~~~l~~l~~L~~L~l~~~~  195 (549)
                      +..+..+++|++|++++|.
T Consensus       141 ~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          141 DGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTTTTTCTTCCEEECCSCC
T ss_pred             HHHhccCCCccEEEecCCC
Confidence            3334444445555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.2e-18  Score=161.82  Aligned_cols=173  Identities=23%  Similarity=0.349  Sum_probs=146.1

Q ss_pred             ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055          300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN  379 (549)
Q Consensus       300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  379 (549)
                      ...+++|+.+++.+|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            4567889999999998873 33 47788999999999999987654  7888999999999999885 33 488899999


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055          380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ  459 (549)
Q Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  459 (549)
                      +|++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            99999999874 3 4678899999999999999854  678889999999999999986654  8889999999999999


Q ss_pred             ccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          460 LTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       460 i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +++. + .+..+++|+.|++++|++..
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            9854 3 48889999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.8e-18  Score=166.70  Aligned_cols=155  Identities=23%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             CCEEEeecCcCccccCcccc-CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEcc
Q 046055          330 LKMIELDHNLLSGEIPENLS-ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVS  408 (549)
Q Consensus       330 L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (549)
                      ++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44555555555444444443 44555555555555554444445555555555555555543333344455555555555


Q ss_pred             CCcccccCCcccccCCCCcEEECCCCcCcccchhhh---hCCCCCCEEECCCCcccccCCccccCCCC--CCeEeCCCCC
Q 046055          409 SNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI---SQLRDLSILNLSRNQLTGPIPTDMQDMMS--LTTLDLSYNN  483 (549)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~n~  483 (549)
                      +|.+....+..|..+++|+.|+|++|.+++..+..+   ..+++|+.|++++|+++...+..+..++.  ++.|++++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            555544444455555555555555555553333333   33455555555555555333334444444  2455555554


Q ss_pred             C
Q 046055          484 L  484 (549)
Q Consensus       484 ~  484 (549)
                      +
T Consensus       201 ~  201 (361)
T 2xot_A          201 L  201 (361)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.6e-18  Score=159.09  Aligned_cols=190  Identities=20%  Similarity=0.261  Sum_probs=155.1

Q ss_pred             cEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecC
Q 046055          259 LLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHN  338 (549)
Q Consensus       259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  338 (549)
                      ..+.+..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|+.|++++|++.+..+  +..+++|++|++++|
T Consensus        27 ~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            3344555555432  2345678999999999988865  347889999999999999985443  888999999999999


Q ss_pred             cCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc
Q 046055          339 LLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT  418 (549)
Q Consensus       339 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  418 (549)
                      .+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence            98864  3478899999999999999853  4678899999999999999844  578889999999999999986544 


Q ss_pred             ccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055          419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       419 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                       +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++...
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence             88999999999999999854 3 4888999999999999998543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.9e-17  Score=149.58  Aligned_cols=154  Identities=23%  Similarity=0.289  Sum_probs=81.8

Q ss_pred             CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055          355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN  434 (549)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (549)
                      +.++.+++.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            34555555554 3333222  45555555555555444555555555555555555555444444555555555555555


Q ss_pred             cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCC
Q 046055          435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPR  512 (549)
Q Consensus       435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~  512 (549)
                      .++...+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++....+. ...+++|+.+++.+||+.|.|.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            555444444555555555555555555 4444555555555555555555543332 2345555555555555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=2.5e-17  Score=167.41  Aligned_cols=134  Identities=27%  Similarity=0.410  Sum_probs=64.1

Q ss_pred             CccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEee
Q 046055          257 KLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD  336 (549)
Q Consensus       257 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  336 (549)
                      +++.|++++|.+.+ +|..+  +++|+.|++++|.++.+ +   ..+++|+.|++++|.+.+ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            66677777776664 44333  25566666666655532 2   234555555555555543 333 222  45555555


Q ss_pred             cCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccc
Q 046055          337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS  413 (549)
Q Consensus       337 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (549)
                      +|.+.++ |.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.+.
T Consensus       129 ~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          129 NNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            5555432 22   33445555555554442 222   23444445554444442 333 22  44444444444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.2e-17  Score=147.24  Aligned_cols=151  Identities=17%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             CCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055          327 LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN  406 (549)
Q Consensus       327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (549)
                      +++|+.|++++|.+... + .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            44555555555555422 2 3444555555555555443  122445556666666666665544555555566666666


Q ss_pred             ccCCcccccCCcccccCCCCcEEECCCCc-CcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          407 VSSNNISGEIPTSISGCISLTTVDFSRNS-LSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      +++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++. + .+..+++|++|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            66666655455555566666666666665 44 233 455566666666666666532 2 4555666666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=3.3e-17  Score=166.61  Aligned_cols=184  Identities=29%  Similarity=0.391  Sum_probs=91.7

Q ss_pred             CccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEcc
Q 046055          233 NLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAM  312 (549)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  312 (549)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.+. .+|   ..+++|+.|++++|.++.. +. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence            55666666665553 44333  245666666666555 233   2345566666666655542 22 332  56666666


Q ss_pred             CCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCC
Q 046055          313 KNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGEL  392 (549)
Q Consensus       313 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  392 (549)
                      +|.+.+ +|.   .+++|+.|++++|.+.++ |.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            666553 443   355566666666665542 22   34556666666666553 333 33  55666666666655 44


Q ss_pred             ccccccCCCC-------CEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhh
Q 046055          393 PEEMFNLKVI-------SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI  444 (549)
Q Consensus       393 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  444 (549)
                      |. +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|.+++..|..+
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            43 322  33       44444444444 233333334444444444444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.5e-17  Score=146.63  Aligned_cols=152  Identities=18%  Similarity=0.305  Sum_probs=134.0

Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      ..++.|++|++++|.+. .++ .+..+++|++|++++|.+. . +..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45678999999999998 555 6889999999999999775 3 347888999999999999999778888999999999


Q ss_pred             EECCCCcCcccchhhhhCCCCCCEEECCCCc-ccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCC
Q 046055          429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQ-LTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPN  507 (549)
Q Consensus       429 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~  507 (549)
                      |++++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|++|++++|++.. ++....+++|+.+++++|+.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence            9999999998888999999999999999998 774 44 68999999999999999995 55778899999999999984

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=8.8e-16  Score=151.03  Aligned_cols=332  Identities=9%  Similarity=0.005  Sum_probs=174.3

Q ss_pred             CCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCcccc
Q 046055           54 PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFG  133 (549)
Q Consensus        54 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  133 (549)
                      +...+|.+|.+|+.+++..+ +...-..+|.++.+|+.+++.++ +......+|.++.+|+.+.+..  .+......+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecceeee
Confidence            34456667777777777543 44345556777777777777543 4444455566666666655542  22222333444


Q ss_pred             CCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCcee
Q 046055          134 TLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLV  213 (549)
Q Consensus       134 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  213 (549)
                      .+..++......  +.......|..+++|+.+.+.++ +..+...+|.++.+|+.+++..+ +.......|.++..|+.+
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            443222221111  11123344555555555555433 22244445555555555555433 222333444444455444


Q ss_pred             ecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccc
Q 046055          214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFS  293 (549)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  293 (549)
                      .+..+..                        .  ..........|+.+.+.... .......+..+..++.+.+..+...
T Consensus       214 ~~~~~~~------------------------~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~  266 (394)
T 4fs7_A          214 EFPNSLY------------------------Y--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR  266 (394)
T ss_dssp             CCCTTCC------------------------E--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE
T ss_pred             ecCCCce------------------------E--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce
Confidence            4433221                        1  11112223344444443221 1122233444455555555443222


Q ss_pred             cCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc
Q 046055          294 GPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG  373 (549)
Q Consensus       294 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  373 (549)
                       .....+..+..++.+......+   ....+..+.+|+.+.+..+ +..+...+|..+.+|+.+++..+ +......+|.
T Consensus       267 -i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          267 -IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             -ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             -eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence             3334555666666665544332   1234556777777777654 45566667777778888877644 5545566778


Q ss_pred             cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEE
Q 046055          374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV  429 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  429 (549)
                      +|++|+.+++..+ ++.....+|.++++|+.+++..+ +. ....+|.+|++|+.+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            8888888888765 44345567778888888888654 22 234567777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.7e-17  Score=168.19  Aligned_cols=150  Identities=25%  Similarity=0.342  Sum_probs=67.8

Q ss_pred             ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055          300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN  379 (549)
Q Consensus       300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  379 (549)
                      +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  134 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  134 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence            3334444444444444432221  33444445555554444422  1344444455555555444421  2244445555


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055          380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ  459 (549)
Q Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  459 (549)
                      .|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.
T Consensus       135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred             EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence            555555554422  334445555555555555543322  44455555555555555432  234445555555555555


Q ss_pred             cc
Q 046055          460 LT  461 (549)
Q Consensus       460 i~  461 (549)
                      +.
T Consensus       209 l~  210 (605)
T 1m9s_A          209 CL  210 (605)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.7e-17  Score=168.22  Aligned_cols=174  Identities=24%  Similarity=0.355  Sum_probs=152.0

Q ss_pred             ccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCC
Q 046055          300 LGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLN  379 (549)
Q Consensus       300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  379 (549)
                      ...++.|+.|++.+|.+. .++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            466788999999999987 344 57889999999999999987655  8889999999999999984 33 688999999


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCc
Q 046055          380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ  459 (549)
Q Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  459 (549)
                      .|++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|+
T Consensus       113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            99999999974 3 4588999999999999999854  678999999999999999997666  8899999999999999


Q ss_pred             ccccCCccccCCCCCCeEeCCCCCCccc
Q 046055          460 LTGPIPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       460 i~~~~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      ++..  ..+..+++|+.|++++|++...
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            9964  4688999999999999999854

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=8.4e-16  Score=151.18  Aligned_cols=312  Identities=12%  Similarity=0.063  Sum_probs=157.7

Q ss_pred             ccccCCCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCc
Q 046055          130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKN  209 (549)
Q Consensus       130 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  209 (549)
                      .+|.+|++|+.+.+..+ ++.....+|.++++|+.+++.++ +..+...+|.++.+|+.+.+..+ +.......|.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            45556666666666432 44344455556666666655433 44444555555555555544432 22233333433322


Q ss_pred             CceeecccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccc
Q 046055          210 LSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQ  289 (549)
Q Consensus       210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  289 (549)
                      .+......  .......                        +|..+.+|+.+.+.++.. ......+..+.+|+.+.+..
T Consensus       142 ~~~~~~~~--~~~i~~~------------------------aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          142 KEITIPEG--VTVIGDE------------------------AFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             SEEECCTT--CCEECTT------------------------TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCT
T ss_pred             cccccCcc--ccccchh------------------------hhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCC
Confidence            22111111  1112223                        344444444444433221 12233344444555555443


Q ss_pred             cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCC
Q 046055          290 NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIP  369 (549)
Q Consensus       290 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  369 (549)
                      + +......++.++..|+.+.+..+..  .+........+|+.+.+.... ..+....+..+..++.+.+..+... ...
T Consensus       195 ~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          195 N-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred             C-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eec
Confidence            3 2223334455555555554443322  122233344566666665432 2244445556666666666554333 444


Q ss_pred             cccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCC
Q 046055          370 PSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRD  449 (549)
Q Consensus       370 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~  449 (549)
                      ..|..+..++.+......+.   ...|..+.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.+...+|.++++
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            55666666666666554322   234556666777666544 44344556777777777777543 55455566777777


Q ss_pred             CCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055          450 LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       450 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      |+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            777777655 55566667777777777766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=3.7e-17  Score=156.72  Aligned_cols=264  Identities=14%  Similarity=0.027  Sum_probs=149.6

Q ss_pred             CCcccEEEccCCCCCCc-CChhhhhCCCCCcEEEccCCCCcCCCCccccC--------CCCcCEEEccCCcceeccCccc
Q 046055           13 KMSLKVLNISGNGFQDY-FPGQIVVGMTELEVLDAFNNNFTGPLPVEIVS--------LKNLKHLSFGGNYFSGEIPESY   83 (549)
Q Consensus        13 ~~~L~~L~Ls~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~--------l~~L~~L~ls~~~~~~~~~~~~   83 (549)
                      +++|++|||++|++... ....   .++.++.+.+..+.+.   ..+|.+        |++|+.|++.+ .+....+.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            78899999999998610 1111   1222455555555443   355677        88888888888 6665666778


Q ss_pred             cCCCCCCEEEccCCCCccccchhccCCCCCceeecCCcc---ccCccCCccccCCCCCC-EEEccCccC-CccCCccccC
Q 046055           84 SEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFN---TYTGGIPPEFGTLSKLR-VLDMASCNI-SGEIPASLSQ  158 (549)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~-~L~l~~~~i-~~~~~~~l~~  158 (549)
                      .++++|+.+++.++.+....+.+|.++.++..+......   .........|..+..|+ .+.+..... ..........
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~  200 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ  200 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence            888888888888888777777778877777776665411   11112233455566666 344432210 0000001111


Q ss_pred             CCCCCeEeccCccccccCCccc-cCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCcc-E
Q 046055          159 LKLLDALFLQMNKLTGHIHPEL-SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLE-V  236 (549)
Q Consensus       159 l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~  236 (549)
                      ..++..+.+.+.-.. .....+ ..+++|+.+++++|.+.......|.++.+|+.+.+.++ +....+..|.++++|+ .
T Consensus       201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            233444443322110 000011 12456666666666666555556666666666666655 5545555566666666 6


Q ss_pred             EEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEe
Q 046055          237 LQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLI  286 (549)
Q Consensus       237 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (549)
                      +++.+ .++...+.+|.++++|+.+++.++.+....+..|..+++|+.++
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66666 45545556666666666666666666655555666666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=4.1e-17  Score=150.69  Aligned_cols=171  Identities=19%  Similarity=0.255  Sum_probs=138.8

Q ss_pred             CCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEE
Q 046055          302 ACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVL  381 (549)
Q Consensus       302 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  381 (549)
                      .+.++..+++.++.+.+..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3445667778888776333  456788999999999998854 3 67788999999999999985444  8899999999


Q ss_pred             EccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          382 SLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      ++++|.+++ ++... . ++|+.|++++|.+.+.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus        91 ~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            999999974 44332 2 8999999999999853  3588899999999999999865 3 6888999999999999998


Q ss_pred             ccCCccccCCCCCCeEeCCCCCCccc
Q 046055          462 GPIPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       462 ~~~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      +.  ..+..+++|+.|++++|++...
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCC
Confidence            66  6788899999999999998854

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=8e-17  Score=154.39  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc-EEECCCCcCcccchhhhhCCCCCCEE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT-TVDFSRNSLSGEIPKAISQLRDLSIL  453 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L  453 (549)
                      +++|+.+++.+|.++...+.+|.++++|+.+++.+| +......+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            455666666655555344445555666666666555 4444555666666666 666666 5555555666666666666


Q ss_pred             ECCCCcccccCCccccCCCCCCeEe
Q 046055          454 NLSRNQLTGPIPTDMQDMMSLTTLD  478 (549)
Q Consensus       454 ~l~~n~i~~~~~~~l~~l~~L~~L~  478 (549)
                      ++.+|.++.+.+.+|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            6666666656666666666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=3.5e-17  Score=151.09  Aligned_cols=170  Identities=16%  Similarity=0.265  Sum_probs=139.6

Q ss_pred             CCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 046055          279 GERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK  358 (549)
Q Consensus       279 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  358 (549)
                      +..+..+++.++.+.+..  .+..+++|+.|++.+|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            455667778888776543  5778899999999999887 455 67788999999999999987655  88899999999


Q ss_pred             ccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcc
Q 046055          359 VAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG  438 (549)
Q Consensus       359 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~  438 (549)
                      +++|++.+ ++.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|++.+.  ..+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            99999985 3332 23 899999999999974 33 588899999999999999854  368889999999999999986


Q ss_pred             cchhhhhCCCCCCEEECCCCccccc
Q 046055          439 EIPKAISQLRDLSILNLSRNQLTGP  463 (549)
Q Consensus       439 ~~~~~~~~~~~L~~L~l~~n~i~~~  463 (549)
                      .  ..+..+++|+.|++++|.+...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            5  6688899999999999999855

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=3.3e-16  Score=137.30  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=102.8

Q ss_pred             CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcc-ccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055          355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPE-EMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR  433 (549)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  433 (549)
                      ++++++++.+. .+|..+.  .++++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57777777776 4554433  2777888888877644443 367777788888888877766677777777788888888


Q ss_pred             CcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCC
Q 046055          434 NSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC  509 (549)
Q Consensus       434 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~  509 (549)
                      |.+++..+..|..+++|+.|++++|+++...+..+..+++|++|++++|++.+..+..+....++...+.++...|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C  163 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCC
Confidence            8777666666777777777777777777777777777777777777777777544422212223333444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=3e-16  Score=137.41  Aligned_cols=132  Identities=23%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      +.++++++.++ .+|..+.  ++++.|++++|.+. .+|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555554 3343322  35555555555554 34455555555566666666555555555555566666666666


Q ss_pred             cccccCCccccCCCCCCeEeCCCCCCcccCCC-CCCCCCCCccccCCCCCCCCCCCC
Q 046055          459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS-GGHFPAFDEASFAGNPNLCLPRNV  514 (549)
Q Consensus       459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~l~~l~l~~n~~~~~~~~~  514 (549)
                      +++...+..|..+++|+.|++++|.+....+. ...+++|+.+++++||+.|+|+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            66555555555666666666666666644432 244566666666666666666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=1.4e-16  Score=139.66  Aligned_cols=174  Identities=19%  Similarity=0.225  Sum_probs=127.8

Q ss_pred             CEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc-ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055          331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP-SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS  409 (549)
Q Consensus       331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (549)
                      +.++++++.+.. .|..+.  ..+++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            788999998874 444333  4899999999999866554 488999999999999999877788899999999999999


Q ss_pred             CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCc-cccCCCCCCeEeCCCCCCcccC
Q 046055          410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPT-DMQDMMSLTTLDLSYNNLNGEV  488 (549)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~  488 (549)
                      |++.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+....+. .+.  ..++...+..+......
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCC
Confidence            999988888889999999999999999988888899999999999999998743221 111  11222233333333222


Q ss_pred             CCCCCCCCCCccccCCCCCCCCC
Q 046055          489 PSGGHFPAFDEASFAGNPNLCLP  511 (549)
Q Consensus       489 p~~~~~~~l~~l~l~~n~~~~~~  511 (549)
                      |.  .+...+..++..+...|..
T Consensus       166 P~--~l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          166 PS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             ST--TTTTSBGGGSCTTTCCCCC
T ss_pred             Ch--HHcCCChhhCcHhhcCcCC
Confidence            32  2344455566666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=1.9e-14  Score=140.60  Aligned_cols=266  Identities=9%  Similarity=0.020  Sum_probs=175.5

Q ss_pred             CCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCCCCCCeE
Q 046055           86 IQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDAL  165 (549)
Q Consensus        86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  165 (549)
                      +..++.+.+.+ .+......+|.++ +|+.+.+..  .+......+|.++ +|+.+.+.. .++......|.+|++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            35566666654 3444555556554 566666653  2444444455553 577777765 4554555667777777777


Q ss_pred             eccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEccCcccc
Q 046055          166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFT  245 (549)
Q Consensus       166 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  245 (549)
                      ++..+.+..+...+|. ..+|+.+.+..+ +.......|.++++|+.+.+..+ +.......|.+ .+|+.+.+.+ .++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence            7777777666666666 367777777643 55456666777777777777653 44455555555 6777777743 344


Q ss_pred             ccCCccccCCCCccEEECcCCccc-----ccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccC
Q 046055          246 GELPENLGRNRKLLLLDVSSNQIE-----GKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTI  320 (549)
Q Consensus       246 ~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  320 (549)
                      .....+|..+++|+.+++.++.+.     ......|..+++|+.+.+.+ .+..+...+|.+|++|+.+.+..+ +....
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            455667777777888777766543     34556677788888888874 466666778888888888888554 55445


Q ss_pred             CccCCCCCCCCEEEeecCcCccccCccccCC-CCCCEEEccCceec
Q 046055          321 PAGIFNLPLLKMIELDHNLLSGEIPENLSIS-DSLNQLKVAYNNIA  365 (549)
Q Consensus       321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~  365 (549)
                      ..+|..+ +|+.+++.+|.........|..+ ..++.+++..+.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            5677788 89999999888877666677666 47888888877654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=1.3e-14  Score=141.76  Aligned_cols=265  Identities=11%  Similarity=0.100  Sum_probs=165.3

Q ss_pred             CCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeec
Q 046055          136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQL  215 (549)
Q Consensus       136 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  215 (549)
                      ..++.+.+.+. ++......|.++ +|+.+.+..+ +..+...+|.+. +|+.+.+.. .+.......|.++++|+.+.+
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            44444444432 232334444443 4555555443 444555555553 466666553 344444555566666666666


Q ss_pred             ccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccC
Q 046055          216 FKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGP  295 (549)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  295 (549)
                      .++.+.......+. +.+|+.+.+..+ +......+|..+++|+.+++..+ +.......|.. .+|+.+.+. +.+..+
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            65555544444444 456666666543 44445556666666666666653 33233334444 567777774 334445


Q ss_pred             CCccccCCCCCcEEEccCCcCc-----ccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCc
Q 046055          296 IPEELGACESLTKFRAMKNQLN-----GTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPP  370 (549)
Q Consensus       296 ~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  370 (549)
                      ...+|.+|++|+.+.+.++.+.     ......|..|++|+.+++.+ .+..+....|..+.+|+.+.+..+ +......
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            5667777888888877766543     23455677888999999884 577677788888899999999665 5556677


Q ss_pred             ccccCCCCCEEEccCCcCCCCCccccccCC-CCCEEEccCCccc
Q 046055          371 SIGNLTNLNVLSLQNNRFNGELPEEMFNLK-VISLINVSSNNIS  413 (549)
Q Consensus       371 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~  413 (549)
                      +|.++ +|+.+++.+|.........|..++ +++.|++..+.+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            88888 999999999987755566777774 7888988877653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=4.5e-16  Score=133.46  Aligned_cols=134  Identities=22%  Similarity=0.199  Sum_probs=94.4

Q ss_pred             CCCCCEEEccCceec-ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEE
Q 046055          351 SDSLNQLKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTV  429 (549)
Q Consensus       351 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  429 (549)
                      ++.+++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356677777777765 45566667777777777777777643  566677777777777777775566666667778888


Q ss_pred             ECCCCcCcccc-hhhhhCCCCCCEEECCCCcccccCC---ccccCCCCCCeEeCCCCCCcc
Q 046055          430 DFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIP---TDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       430 ~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      ++++|.+++.. +..+..+++|+.|++++|.++...+   ..+..+++|++|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            88888777532 2567777788888888888775444   367777888888888887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=7.6e-16  Score=129.13  Aligned_cols=127  Identities=20%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             CCCCEEEccCceec-ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEE
Q 046055          352 DSLNQLKVAYNNIA-GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVD  430 (549)
Q Consensus       352 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  430 (549)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666655 44555556666666666666666533  4555666666666666666644555555566666666


Q ss_pred             CCCCcCccc-chhhhhCCCCCCEEECCCCcccccCC---ccccCCCCCCeEeCC
Q 046055          431 FSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIP---TDMQDMMSLTTLDLS  480 (549)
Q Consensus       431 L~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~  480 (549)
                      +++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666642 23556666666666666666664443   356666666666664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=3.5e-15  Score=130.58  Aligned_cols=128  Identities=27%  Similarity=0.378  Sum_probs=89.8

Q ss_pred             CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055          355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN  434 (549)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (549)
                      ++++++++.+. .+|..+  .++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35566666665 334332  246777777777776 56667777777777777777777666667777777777777777


Q ss_pred             cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      .++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7776666677777777777777777775555567777778888888777753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.6e-18  Score=177.31  Aligned_cols=107  Identities=22%  Similarity=0.318  Sum_probs=53.6

Q ss_pred             CCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055          378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR  457 (549)
Q Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  457 (549)
                      |+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            444555555544 2333 444555555555555554 344445555555555555555543 33 445555555555555


Q ss_pred             CcccccC-CccccCCCCCCeEeCCCCCCcccCC
Q 046055          458 NQLTGPI-PTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       458 n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      |++++.. |..+..+++|+.|++++|++.+.+|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5555443 4555555555555555555554444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.4e-15  Score=130.34  Aligned_cols=133  Identities=17%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             CCCCCEEEeecCcCc-cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055          327 LPLLKMIELDHNLLS-GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI  405 (549)
Q Consensus       327 ~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (549)
                      .++|++|++++|.+. +..|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356667777776665 44455556667777777777776644  566777888888888888875566666678888888


Q ss_pred             EccCCcccccC-CcccccCCCCcEEECCCCcCcccch---hhhhCCCCCCEEECCCCccc
Q 046055          406 NVSSNNISGEI-PTSISGCISLTTVDFSRNSLSGEIP---KAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       406 ~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~i~  461 (549)
                      ++++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888877432 2567788888888888888875544   46788888888888888887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.9e-18  Score=175.37  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=142.9

Q ss_pred             cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCc-------------CcccCCccCCCCCCCCEEE-eecCcCcc
Q 046055          277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQ-------------LNGTIPAGIFNLPLLKMIE-LDHNLLSG  342 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~~~~~~~~~L~~L~-l~~~~l~~  342 (549)
                      ...+.|+.|++++|.+. ..|..++.+++|+.|++.+|.             ..+..|..+..+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            55678888888888887 456778888888888876653             3334455556666777777 44443221


Q ss_pred             ccCc-----ccc--CCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccccc
Q 046055          343 EIPE-----NLS--ISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGE  415 (549)
Q Consensus       343 ~~~~-----~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (549)
                      ....     .+.  ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ 
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence            1000     000  11358889999998885 555 888889999999999888 778888888999999999998885 


Q ss_pred             CCcccccCCCCcEEECCCCcCcccc-hhhhhCCCCCCEEECCCCcccccCCcc---ccCCCCCCeEeC
Q 046055          416 IPTSISGCISLTTVDFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIPTD---MQDMMSLTTLDL  479 (549)
Q Consensus       416 ~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~---l~~l~~L~~L~l  479 (549)
                      +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|.+++..+..   +..+|+|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            45 7888889999999999988765 888888899999999999888554422   234788888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=6.1e-15  Score=127.52  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055          355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN  434 (549)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (549)
                      +.++++++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45556666555 233222  245666666666665444444555566666666666655444444555566666666666


Q ss_pred             cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccC
Q 046055          435 SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEV  488 (549)
Q Consensus       435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  488 (549)
                      .+++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            665444444555556666666666655444444455555566666555555433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.2e-15  Score=126.25  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             CCCCEEEeecCcCc-cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055          328 PLLKMIELDHNLLS-GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN  406 (549)
Q Consensus       328 ~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (549)
                      ++++.|++++|.+. +..|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55667777777666 45555566677777777777777644  5677788888888888888765777777788888888


Q ss_pred             ccCCccccc-CCcccccCCCCcEEECCCCcCcccch---hhhhCCCCCCEEECCC
Q 046055          407 VSSNNISGE-IPTSISGCISLTTVDFSRNSLSGEIP---KAISQLRDLSILNLSR  457 (549)
Q Consensus       407 l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~  457 (549)
                      +++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888753 23677888888888888888876554   4678888888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.59  E-value=3.2e-13  Score=132.74  Aligned_cols=306  Identities=10%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             CCeEeccCccccccCCccccCCCCCCEEeCCCCc---CccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEE
Q 046055          162 LDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC---LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ  238 (549)
Q Consensus       162 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  238 (549)
                      |+.+.+..+ ++.+...+|.++.+|+.+.+..+.   ++......|.++.+|+.+.+..+ +.......+..+.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            444444332 333444444444444444444321   23233344444455554444332 2223333444555555555


Q ss_pred             ccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcc
Q 046055          239 VWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNG  318 (549)
Q Consensus       239 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  318 (549)
                      +..+. .......+..+..|+.+.+..+ +.......+ ....|+.+.+..+.. .....++..+..++.......... 
T Consensus       144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~-  218 (394)
T 4gt6_A          144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP-  218 (394)
T ss_dssp             CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC-
T ss_pred             cccee-eeecccceecccccccccccce-eeEeccccc-cccceeEEEECCccc-ccccchhhhccccceecccccccc-
Confidence            54332 2133344455555555555433 211222222 234455555544322 133344555555555544433222 


Q ss_pred             cCCcc--------------CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055          319 TIPAG--------------IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ  384 (549)
Q Consensus       319 ~~~~~--------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  384 (549)
                      .....              +.....+..+.+.. .+..+....|..+..|+.+.+..+... ....+|.++++|+.+.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred             cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence            11110              01112222232221 122233334444445555544433222 333344445555555543


Q ss_pred             CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055          385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      . .++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++... . 
T Consensus       297 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-  371 (394)
T 4gt6_A          297 S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-  371 (394)
T ss_dssp             T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-
T ss_pred             C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-
Confidence            2 222122334444445555544432 22233344445555555554322 33333444444555555555444332 1 


Q ss_pred             CccccCCCCCCeEeCCCC
Q 046055          465 PTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n  482 (549)
                       ..+..+.+|+.+.+..+
T Consensus       372 -~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          372 -NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             -HTCBCCCCC--------
T ss_pred             -hhhhccCCCCEEEeCCC
Confidence             23333444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.1e-14  Score=125.98  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             CCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCC
Q 046055          378 LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSR  457 (549)
Q Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  457 (549)
                      .+.++++++.++ .+|..+  .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            355666666655 344332  24666666666666544444556666666666666666655445556666666666666


Q ss_pred             CcccccCCccccCCCCCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCC
Q 046055          458 NQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPR  512 (549)
Q Consensus       458 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~  512 (549)
                      |.++...+..+..+++|++|++++|.+.+.++.. ..+++|+.+++++|++.|.|+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6666555555566666666666666666444433 445666666666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.58  E-value=9.5e-13  Score=129.33  Aligned_cols=133  Identities=12%  Similarity=0.186  Sum_probs=69.7

Q ss_pred             ccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCC
Q 046055          322 AGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKV  401 (549)
Q Consensus       322 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (549)
                      .+|..+..|+.+.+..+.. .+....|..+..|+.+.+.. .+......+|.+|.+|+.+++..+ ++.....+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3444555566665554332 24445555666666666642 333344556666667777766543 33234456666777


Q ss_pred             CCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          402 ISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |+.+.+..+ +......+|.+|.+|+.+++.++...   ...+..+..|+.+.+..+.+.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            777777543 44445566777777777777766432   134566667777776666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.6e-15  Score=160.21  Aligned_cols=116  Identities=22%  Similarity=0.309  Sum_probs=52.1

Q ss_pred             cccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC
Q 046055          299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL  378 (549)
Q Consensus       299 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  378 (549)
                      .+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. ..|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3444444444444444444 33333334444444444444444 33344444444444444444444 334444444444


Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCc
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPT  418 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  418 (549)
                      ++|++++|.+. .+|..|..+++|+.|+|++|++.+..|.
T Consensus       296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            44444444443 3444444444444444444444443333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.2e-14  Score=125.40  Aligned_cols=134  Identities=18%  Similarity=0.178  Sum_probs=100.7

Q ss_pred             ccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCc
Q 046055          348 LSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLT  427 (549)
Q Consensus       348 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  427 (549)
                      +..+..+++|++++|.+.. ++......++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4567788888888888884 444333334888888888888743  5677888888888888888855545567888888


Q ss_pred             EEECCCCcCcccchh--hhhCCCCCCEEECCCCcccccCCc----cccCCCCCCeEeCCCCCCcc
Q 046055          428 TVDFSRNSLSGEIPK--AISQLRDLSILNLSRNQLTGPIPT----DMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       428 ~L~L~~n~i~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +|++++|.++ .++.  .+..+++|+.|++++|.+. ..+.    .+..+++|+.|++++|....
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8888888886 4444  6778888888888888887 3444    37778888888888887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=2.3e-14  Score=123.62  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS  403 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (549)
                      +..+++|++|++++|.+... +......++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            44567778888888877744 33333334788888888877754  4667777888888888877744334456777888


Q ss_pred             EEEccCCcccccCCc--ccccCCCCcEEECCCCcCcccchh----hhhCCCCCCEEECCCCccc
Q 046055          404 LINVSSNNISGEIPT--SISGCISLTTVDFSRNSLSGEIPK----AISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       404 ~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~  461 (549)
                      .|++++|.+. ..+.  .+..+++|+.|++++|.+.. .|.    .+..+++|+.|++++|.+.
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888775 3443  66777788888888887763 343    3677778888888777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=5.3e-15  Score=156.19  Aligned_cols=152  Identities=22%  Similarity=0.273  Sum_probs=78.7

Q ss_pred             CccccCCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccccCC
Q 046055           80 PESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQL  159 (549)
Q Consensus        80 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l  159 (549)
                      +..+..+..|+.|++++|.+. .++..+..+++|++|++++ +.+. .+|..|+.+++|++|++++|.++ .+|..+..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~-N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNG-NSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTT-SCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeC-CcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            444555555555555555554 3333444555566666655 4444 45555666666666666666666 456666666


Q ss_pred             CCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCC-cCceeecccccCcccCCccCCCCCCccEEE
Q 046055          160 KLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALK-NLSLVQLFKNNLRGPFPSFVGDYPNLEVLQ  238 (549)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  238 (549)
                      ++|+.|++++|.+. ..+..|..+++|++|+|++|.+.+..|..+..+. ....+++.+|.+...+|.      .++.|+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence            66666666666665 3344466677777777777776655555443321 112355666666544443      344455


Q ss_pred             ccCc
Q 046055          239 VWGN  242 (549)
Q Consensus       239 l~~~  242 (549)
                      ++.|
T Consensus       366 l~~n  369 (727)
T 4b8c_D          366 INTD  369 (727)
T ss_dssp             ----
T ss_pred             eecc
Confidence            5544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.4e-15  Score=134.17  Aligned_cols=132  Identities=23%  Similarity=0.275  Sum_probs=81.6

Q ss_pred             cccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCC
Q 046055          347 NLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISL  426 (549)
Q Consensus       347 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  426 (549)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ .+ .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            45556666777776666664 44 5666677777777777666 555555556667777777776664 22 46666677


Q ss_pred             cEEECCCCcCcccch-hhhhCCCCCCEEECCCCcccccCCc----------cccCCCCCCeEeCCCCCCc
Q 046055          427 TTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPT----------DMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       427 ~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~l~~l~~L~~L~l~~n~~~  485 (549)
                      ++|++++|.+++..+ ..+..+++|+.|++++|.+.+..|.          .+..+++|+.||  +|++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777777777664322 3566667777777777766544332          255666666665  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=3.5e-13  Score=115.24  Aligned_cols=110  Identities=19%  Similarity=0.227  Sum_probs=83.1

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      ..+.+++++|.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3577888888887 5665543  678888888888877777778888888888888888876666667778888888888


Q ss_pred             CCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055          457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      +|+++...+..+..+++|++|++++|++....+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888876666667777888888888887765443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=1.1e-13  Score=118.72  Aligned_cols=106  Identities=22%  Similarity=0.279  Sum_probs=71.6

Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      +.+++++|.+. .+|..+.  ++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777775 5565443  67777777777777666666777777777777777777555555666777777777777


Q ss_pred             cccccCCccccCCCCCCeEeCCCCCCccc
Q 046055          459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      +++...+..+..+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            77755544566677777777777766633

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=5e-16  Score=137.02  Aligned_cols=152  Identities=20%  Similarity=0.284  Sum_probs=123.6

Q ss_pred             CCCCCCEEEccCceecccCCc------ccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccC
Q 046055          350 ISDSLNQLKVAYNNIAGKIPP------SIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGC  423 (549)
Q Consensus       350 ~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (549)
                      ....++.++++++.+.+..+.      .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            344555566666666555554      78899999999999999984 66 8889999999999999998 667777788


Q ss_pred             CCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCC-ccccCCCCCCeEeCCCCCCcccCCC-----------C
Q 046055          424 ISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPS-----------G  491 (549)
Q Consensus       424 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~-----------~  491 (549)
                      ++|++|++++|.+++ +| .+..+++|+.|++++|+++...+ ..+..+++|++|++++|++.+.+|.           .
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            999999999999985 45 68888999999999999985433 4688899999999999999887776           3


Q ss_pred             CCCCCCCccccCCCCCC
Q 046055          492 GHFPAFDEASFAGNPNL  508 (549)
Q Consensus       492 ~~~~~l~~l~l~~n~~~  508 (549)
                      ..++.|+.++  +|+..
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            5678888775  55543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=6.3e-13  Score=113.63  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             CCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCC
Q 046055          354 LNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSR  433 (549)
Q Consensus       354 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  433 (549)
                      .+++++++|.+. .+|..+  .++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345666666665 234333  25566666666666655555566666666666666666655555556666666666666


Q ss_pred             CcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          434 NSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       434 n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |.+++..+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6666544455666666666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.4e-12  Score=111.91  Aligned_cols=104  Identities=21%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             CEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCC
Q 046055          355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRN  434 (549)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (549)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..|..+++|+.|++++|++.+..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45556665554 3343332  55666666666665444555555666666666666665444444555666666666666


Q ss_pred             cCcccchhhhhCCCCCCEEECCCCccc
Q 046055          435 SLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       435 ~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      .+++..+..+..+++|+.|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            665444444555566666666666555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.40  E-value=1.1e-10  Score=114.13  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             CCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEE
Q 046055          326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLI  405 (549)
Q Consensus       326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (549)
                      .+.+++.+.+..+ +..+....+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3444444444332 22233334444455555555443 33233444555555555555433 221333445556666666


Q ss_pred             EccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCC
Q 046055          406 NVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM  472 (549)
Q Consensus       406 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~  472 (549)
                      .+.++.+......+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            66655555445556666666666666543 44445556666667776666544 4445555665553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.39  E-value=1e-10  Score=114.33  Aligned_cols=154  Identities=12%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             CCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCC
Q 046055          324 IFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVIS  403 (549)
Q Consensus       324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (549)
                      +..+..+..+.+..... ......+..+..++.+.+..+ +......++..+..|+.+.+..+ ++......|..+.+|+
T Consensus       190 ~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            33445566666554332 244455667778888887654 33355667778888888888765 4434556777888888


Q ss_pred             EEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055          404 LINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      .+.+..+ +......+|.+|++|+.+.+.++.++.+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+.+..+
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8888654 44455667888889999988888887677788888888999988755 66577778888888888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=1.1e-13  Score=133.84  Aligned_cols=86  Identities=22%  Similarity=0.315  Sum_probs=38.4

Q ss_pred             CCCCEEEccCCccccc----CCcccccCCCCcEEECCCCcCcccc----hhhhhCCCCCCEEECCCCcccccC----Ccc
Q 046055          400 KVISLINVSSNNISGE----IPTSISGCISLTTVDFSRNSLSGEI----PKAISQLRDLSILNLSRNQLTGPI----PTD  467 (549)
Q Consensus       400 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~----~~~  467 (549)
                      ++|+.|++++|.+++.    ++..+..+++|++|+|++|.+++..    ...+...++|+.|++++|.|++..    +..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4455555555544321    1122234455555555555554321    233344445555555555554321    122


Q ss_pred             ccCCCCCCeEeCCCCCCc
Q 046055          468 MQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       468 l~~l~~L~~L~l~~n~~~  485 (549)
                      +...++|++|++++|++.
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            333455555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.2e-13  Score=133.75  Aligned_cols=158  Identities=14%  Similarity=0.174  Sum_probs=91.8

Q ss_pred             CCCCEEEeecCcCccccCccc-cCCCCCCEEEccCceecccCCccc-----ccCCCCCEEEccCCcCCCC----Cccccc
Q 046055          328 PLLKMIELDHNLLSGEIPENL-SISDSLNQLKVAYNNIAGKIPPSI-----GNLTNLNVLSLQNNRFNGE----LPEEMF  397 (549)
Q Consensus       328 ~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~  397 (549)
                      ++|++|++++|.+.......+ ..+.+|++|++++|.++......+     ...++|++|++++|.+++.    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            456666666666543322222 223456677777776653322222     2356777777777776532    233345


Q ss_pred             cCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----chhhhhCCCCCCEEECCCCcccccCCcccc
Q 046055          398 NLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNLSRNQLTGPIPTDMQ  469 (549)
Q Consensus       398 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  469 (549)
                      ..++|++|++++|.+.+..    +..+..+++|++|+|++|.+++.    +...+...++|++|++++|.|++.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            6777888888888776432    34556677888888888888753    334455668888888888888755444443


Q ss_pred             CC---C--CCCeEe--CCCCCCc
Q 046055          470 DM---M--SLTTLD--LSYNNLN  485 (549)
Q Consensus       470 ~l---~--~L~~L~--l~~n~~~  485 (549)
                      .+   .  .|+.+.  +..|.+.
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HCC------CEEECCCC----CH
T ss_pred             HHhcCCCccchhhHhhhcCCccC
Confidence            32   1  155665  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.9e-11  Score=116.72  Aligned_cols=105  Identities=21%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             CEEEccCC-cCCCCCccccccCCCCCEEEccC-CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECC
Q 046055          379 NVLSLQNN-RFNGELPEEMFNLKVISLINVSS-NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLS  456 (549)
Q Consensus       379 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  456 (549)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788887 787 6777 88888999999986 88887777788899999999999999988888888899999999999


Q ss_pred             CCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          457 RNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       457 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +|+++...+..+..++ |+.|++.+|++..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999866666666665 8999999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.7e-10  Score=111.31  Aligned_cols=104  Identities=18%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             CEEEccCc-eecccCCcccccCCCCCEEEccC-CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECC
Q 046055          355 NQLKVAYN-NIAGKIPPSIGNLTNLNVLSLQN-NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFS  432 (549)
Q Consensus       355 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  432 (549)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|++.+..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 787 5777 99999999999996 99987777889999999999999999998888899999999999999


Q ss_pred             CCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          433 RNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       433 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      +|.+++..+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999976666676665 999999999997

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=1.1e-09  Score=104.93  Aligned_cols=156  Identities=15%  Similarity=0.213  Sum_probs=80.0

Q ss_pred             cCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccc--cCCCCCEEEccC--CcCCCC-----Cc
Q 046055          323 GIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG--NLTNLNVLSLQN--NRFNGE-----LP  393 (549)
Q Consensus       323 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~  393 (549)
                      .+..+|+|++|++++|.-... +. + ..++|++|++..|.+.......+.  .+++|++|+|+.  +...+.     +.
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            344567777777776631111 11 2 256677777766665433222222  566777776642  111101     11


Q ss_pred             ccc--ccCCCCCEEEccCCcccccCCccc---ccCCCCcEEECCCCcCcccc----hhhhhCCCCCCEEECCCCcccccC
Q 046055          394 EEM--FNLKVISLINVSSNNISGEIPTSI---SGCISLTTVDFSRNSLSGEI----PKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       394 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      ..+  ..+++|+.|++.+|.+.+..+..+   ..+++|++|+|+.|.+++..    +..+..+++|+.|++++|.|++..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            111  135677777777776653222222   23567777777777766532    222344567777777777666443


Q ss_pred             CccccC-CCCCCeEeCCCCC
Q 046055          465 PTDMQD-MMSLTTLDLSYNN  483 (549)
Q Consensus       465 ~~~l~~-l~~L~~L~l~~n~  483 (549)
                      ...+.. +  ...+++++++
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            333332 1  2456666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=2e-09  Score=103.10  Aligned_cols=176  Identities=13%  Similarity=0.154  Sum_probs=113.0

Q ss_pred             CCCCCCEEEeecCcCc---------cccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCcccc
Q 046055          326 NLPLLKMIELDHNLLS---------GEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEM  396 (549)
Q Consensus       326 ~~~~L~~L~l~~~~l~---------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  396 (549)
                      .+++|+.|.+......         +.....+..++.|+.|.+++|.-. .++. + .+++|++|++..|.+.......+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            3556666666543221         012233466789999999988322 2333 3 37899999999988764333334


Q ss_pred             c--cCCCCCEEEccCC--ccccc-----CCccc--ccCCCCcEEECCCCcCcccchhhhh---CCCCCCEEECCCCcccc
Q 046055          397 F--NLKVISLINVSSN--NISGE-----IPTSI--SGCISLTTVDFSRNSLSGEIPKAIS---QLRDLSILNLSRNQLTG  462 (549)
Q Consensus       397 ~--~l~~L~~L~l~~n--~l~~~-----~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~l~~n~i~~  462 (549)
                      .  .+|+|+.|+|+.+  ...+.     +...+  ..+++|+.|++.+|.+++..+..+.   .+++|+.|+++.|.+.+
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3  6899999998632  21111     11122  2479999999999999864443332   57899999999999986


Q ss_pred             cC----CccccCCCCCCeEeCCCCCCcccCCCCCCCCC-C-CccccCCCC
Q 046055          463 PI----PTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPA-F-DEASFAGNP  506 (549)
Q Consensus       463 ~~----~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~-l-~~l~l~~n~  506 (549)
                      ..    +..+..+++|+.|++++|.+....-.  .+.. + .++++++++
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~--~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKK--ELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH--HHHHHCCSEEECCSBC
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCHHHHH--HHHHHcCCEEEecCCc
Confidence            43    34446679999999999987632110  1111 1 446777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=1e-08  Score=88.57  Aligned_cols=86  Identities=12%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             CCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----chhhhhCCCCCCEEEC--CCCccccc----C
Q 046055          399 LKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNL--SRNQLTGP----I  464 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l--~~n~i~~~----~  464 (549)
                      .++|++|++++|.+.+..    ...+...++|++|+|++|.|++.    +...+...++|++|++  ++|.|...    +
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            344555555555443221    12233344555555555555532    2333444455555555  55555432    1


Q ss_pred             CccccCCCCCCeEeCCCCCC
Q 046055          465 PTDMQDMMSLTTLDLSYNNL  484 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n~~  484 (549)
                      ...+...++|++|++++|.+
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeccCCCC
Confidence            22334445566666655554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=2e-08  Score=86.72  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=67.8

Q ss_pred             CCCCCCEEEccCc-eeccc----CCcccccCCCCCEEEccCCcCCCCC----ccccccCCCCCEEEccCCccccc----C
Q 046055          350 ISDSLNQLKVAYN-NIAGK----IPPSIGNLTNLNVLSLQNNRFNGEL----PEEMFNLKVISLINVSSNNISGE----I  416 (549)
Q Consensus       350 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~  416 (549)
                      ..+.|++|++++| .+...    +...+...++|++|++++|.+.+..    ...+...++|++|++++|.+.+.    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3444555555554 44321    2233444566667777776664322    23344456777777777776543    2


Q ss_pred             CcccccCCCCcEEEC--CCCcCccc----chhhhhCCCCCCEEECCCCccc
Q 046055          417 PTSISGCISLTTVDF--SRNSLSGE----IPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       417 ~~~~~~~~~L~~L~L--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      ...+...++|++|+|  ++|.+++.    +...+...++|++|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            345666778888888  77888754    3345566688888888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=4.5e-08  Score=82.01  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=39.4

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCc-ccccCCcccccC----CCCcEEECCCCc-CcccchhhhhCCCCC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN-ISGEIPTSISGC----ISLTTVDFSRNS-LSGEIPKAISQLRDL  450 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-i~~~~~~~~~~~~~L  450 (549)
                      .|+.||+++|.++......+..+++|+.|++++|. +++.....+..+    ++|++|+|++|. |++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544444444455555555555553 333322233332    245555555553 444333444445555


Q ss_pred             CEEECCCC
Q 046055          451 SILNLSRN  458 (549)
Q Consensus       451 ~~L~l~~n  458 (549)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=1.6e-07  Score=78.68  Aligned_cols=84  Identities=11%  Similarity=0.055  Sum_probs=45.4

Q ss_pred             CCCCEEEccCceecccCCcccccCCCCCEEEccCCc-CCCCCccccccC----CCCCEEEccCCc-ccccCCcccccCCC
Q 046055          352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNR-FNGELPEEMFNL----KVISLINVSSNN-ISGEIPTSISGCIS  425 (549)
Q Consensus       352 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~  425 (549)
                      ..|+.|++++|.++...-..+..+++|++|++++|. +++..-..+..+    ++|+.|++++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666554444445566666666666663 443322333332    346666666663 55444444555666


Q ss_pred             CcEEECCCCc
Q 046055          426 LTTVDFSRNS  435 (549)
Q Consensus       426 L~~L~L~~n~  435 (549)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=3.7e-07  Score=82.68  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             CCCCCEEEccCCcccc--cCCcccccCCCCcEEECCCCcCccc-chhhhhCCCCCCEEECCCCcccccCC-------ccc
Q 046055          399 LKVISLINVSSNNISG--EIPTSISGCISLTTVDFSRNSLSGE-IPKAISQLRDLSILNLSRNQLTGPIP-------TDM  468 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~-------~~l  468 (549)
                      +++|+.|++++|++.+  .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|.+....+       ..+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            3444444444444433  1223334455555555555555432 01112222 55555555555553332       124


Q ss_pred             cCCCCCCeEe
Q 046055          469 QDMMSLTTLD  478 (549)
Q Consensus       469 ~~l~~L~~L~  478 (549)
                      ..+|+|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4556666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=2e-06  Score=77.89  Aligned_cols=79  Identities=24%  Similarity=0.352  Sum_probs=63.7

Q ss_pred             ccCCCCcEEECCCCcCcc--cchhhhhCCCCCCEEECCCCcccccCCccccCCC--CCCeEeCCCCCCcccCCC------
Q 046055          421 SGCISLTTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM--SLTTLDLSYNNLNGEVPS------  490 (549)
Q Consensus       421 ~~~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~------  490 (549)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|+|++|+|+..  ..+..+.  +|++|++++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            468899999999999987  3456778999999999999999855  2344444  899999999999987764      


Q ss_pred             --CCCCCCCCccc
Q 046055          491 --GGHFPAFDEAS  501 (549)
Q Consensus       491 --~~~~~~l~~l~  501 (549)
                        ...+|+|+.++
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence              24678888776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.73  E-value=1.9e-05  Score=67.39  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             cCCCCCEEEccCC-cCCCC----CccccccCCCCCEEEccCCcccccCC----cccccCCCCcEEECCCCcCccc----c
Q 046055          374 NLTNLNVLSLQNN-RFNGE----LPEEMFNLKVISLINVSSNNISGEIP----TSISGCISLTTVDFSRNSLSGE----I  440 (549)
Q Consensus       374 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~i~~~----~  440 (549)
                      .-+.|++|++++| .+...    +.+.+..-..|+.|+|++|.+.+...    ..+...+.|++|+|++|.|++.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445555555553 43311    12233344556666666665543322    2333456666666666666643    2


Q ss_pred             hhhhhCCCCCCEEECCCCc---ccc----cCCccccCCCCCCeEeCCCCCC
Q 046055          441 PKAISQLRDLSILNLSRNQ---LTG----PIPTDMQDMMSLTTLDLSYNNL  484 (549)
Q Consensus       441 ~~~~~~~~~L~~L~l~~n~---i~~----~~~~~l~~l~~L~~L~l~~n~~  484 (549)
                      .+++..-++|++|++++|.   +..    .+.+.+...+.|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3344455667777776542   222    1223445556677777665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=6.1e-05  Score=64.27  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             CCCCCEEEccCc-eecc----cCCcccccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCCcccccC----C
Q 046055          351 SDSLNQLKVAYN-NIAG----KIPPSIGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEI----P  417 (549)
Q Consensus       351 ~~~L~~L~l~~n-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~  417 (549)
                      .+.|++|+++++ .+..    .+...+..-+.|++|+|++|.+.+.    +.+.+..-+.|+.|+|++|.|.+..    .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345555555553 4432    1233444556666666666666432    2233345566777777777765332    2


Q ss_pred             cccccCCCCcEEECCCC---cCcc----cchhhhhCCCCCCEEECCCCccc
Q 046055          418 TSISGCISLTTVDFSRN---SLSG----EIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       418 ~~~~~~~~L~~L~L~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      .++..-+.|++|+|++|   .++.    .+.+.+..-++|+.|+++.|.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            34455667888888765   3443    23455666778888888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00022  Score=56.85  Aligned_cols=45  Identities=33%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCCeEeCCCCCCcccCCCC-CCCCCCCccccCCCCCCCCCCCCCCC
Q 046055          473 SLTTLDLSYNNLNGEVPSG-GHFPAFDEASFAGNPNLCLPRNVTCL  517 (549)
Q Consensus       473 ~L~~L~l~~n~~~~~~p~~-~~~~~l~~l~l~~n~~~~~~~~~~~~  517 (549)
                      +|+.|+|++|.+....+.. ..+++|+.+++.+|||.|+|......
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~   77 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR   77 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHH
Confidence            3555555555555333322 34455666677777777777654433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.82  E-value=0.0021  Score=51.09  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=18.0

Q ss_pred             CCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcc
Q 046055          425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       425 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i  460 (549)
                      +|++|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555544444444555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	549
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (212), Expect = 2e-19
 Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 5/256 (1%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
              + + + GN  +     +    R L +L + SN +             L+ L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 292 FSGPI-PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSI 350
               + P        L      +  L    P     L  L+ + L  N L     +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 351 SDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSN 410
             +L  L +  N I+     +   L +L+ L L  NR     P    +L  +  + + +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 411 NISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD 470
           N+S     +++   +L  +  + N    +   A      L     S +++   +P  +  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 471 MMSLTTLDLSYNNLNG 486
                   L+ N+L G
Sbjct: 271 ---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 2e-15
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 4/248 (1%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
              + +    N  +        + +NL  L    N  +     +++ +  LE L L+   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 99  LNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS 157
              +  P     L  L  +++        G     G  + L+ L +    +      +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPDDTFR 150

Query: 158 QLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFK 217
            L  L  LFL  N+++        GL SL +L L  N +    P +F  L  L  + LF 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 218 NNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLC 277
           NNL       +     L+ L++  N +  +          L     SS+++   +P+ L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRL- 268

Query: 278 KGERLKSL 285
            G  LK L
Sbjct: 269 AGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 88  SLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCN 147
           + + + L+G  ++          +NL  +++              G     ++    +  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 148 ISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
           +    PA+   L  L  L L    L         GL +L  L L  N L     ++F  L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQ 267
            NL+ + L  N +            +L+ L +  N      P       +L+ L + +N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 268 IEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNL 327
           +       L     L+ L L  N +             L KFR   +++  ++P  +   
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 328 PLLKMIELDHNLLSG 342
            L     L  N L G
Sbjct: 272 DLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 3/217 (1%)

Query: 272 IPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLK 331
           +P  +      + + L  N  S        AC +LT      N L     A    L LL+
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 332 MIELDHNLLSGEI-PENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390
            ++L  N     + P        L+ L +    +    P     L  L  L LQ+N    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450
              +   +L  ++ + +  N IS     +  G  SL  +   +N ++   P A   L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGE 487
             L L  N L+      +  + +L  L L+ N    +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 3/173 (1%)

Query: 319 TIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL 378
            +P GI      + I L  N +S     +     +L  L +  N +A     +   L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 379 NVLSLQNNRFNGELPEEMFN-LKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS 437
             L L +N     +    F+ L  +  +++    +    P    G  +L  +    N+L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 438 GEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
                    L +L+ L L  N+++       + + SL  L L  N +    P 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 6e-19
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 49/380 (12%)

Query: 135 LSKLRVLDMASCNISGEIPAS-LSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
           L++     +   N++  +  + L Q+  L A  L +  + G     +  L +LTQ++ S 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 75

Query: 194 NCLTGEVP-ESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
           N LT   P ++ + L ++ +      ++             L   Q+   +    L    
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 253 GRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL----------GA 302
                   +   S        + L  G ++  L  + NL +    +              
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYN 362
             +L    A  NQ++   P  +  L  L  + L+ N L       L+   +L  L +A N
Sbjct: 196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 363 NIAGKIPPSIGNLTNLNVLSLQNNRFNGELP--------------------EEMFNLKVI 402
            I+   P  +  LT L  L L  N+ +   P                      + NLK +
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 403 SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG 462
           + + +  NNIS   P  +S    L  + F+ N +S     +++ L +++ L+   NQ++ 
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 463 PIPTDMQDMMSLTTLDLSYN 482
             P  + ++  +T L L+  
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 3e-14
 Identities = 65/359 (18%), Positives = 121/359 (33%), Gaps = 28/359 (7%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIP-ESYSEIQSLEYLGLNG 96
           + ++  L A          VE   L NL  ++F  N  +   P ++ +++  +       
Sbjct: 43  LDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 97  IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASL 156
             +   A +       L    I   +            LS   + D+++ +    +    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 157 SQLKLLDALFL---------QMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSAL 207
              ++ D   L          ++         L+ L +L  L  + N ++   P      
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-- 218

Query: 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQ 267
            NL  + L  N L+      +    NL  L +  N  +   P  L    KL  L + +NQ
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 268 IEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNL 327
           I    P           L   Q     PI       ++LT      N ++   P  + +L
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISN----LKNLTYLTLYFNNISDISP--VSSL 328

Query: 328 PLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNN 386
             L+ +   +N +S     +L+   ++N L   +N I+   P  + NLT +  L L + 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 17/195 (8%)

Query: 19  LNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE 78
           L  + N   D  P  I   +T L+ L    N         + SL NL  L    N  S  
Sbjct: 202 LIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 256

Query: 79  IPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKL 138
            P   S +  L  L L    ++  +P     L  L  +     N            L  L
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG 198
             L +   NIS   P  +S L  L  LF   NK++      L+ L ++  L    N ++ 
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 365

Query: 199 EVP-ESFSALKNLSL 212
             P  + + +  L L
Sbjct: 366 LTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 31/171 (18%)

Query: 14  MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGN 73
            +L  L+++GN  +D      +  +T L  LD  NN  +   P  +  L  L  L  G N
Sbjct: 219 TNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 74  YFSGEIP--------------------ESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNL 113
             S   P                       S +++L YL L    ++  +P  +S L  L
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 114 REMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIP-ASLSQLKLLD 163
           + ++    N  +         L+ +  L      IS   P A+L+++  L 
Sbjct: 332 QRLFFAN-NKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 23/285 (8%)

Query: 205 SALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVS 264
           +AL       L K N+         D   +  LQ           + +     L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 265 SNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGI 324
           +NQ+    P      + L  L+ +    +        A  +      + N     I    
Sbjct: 75  NNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 325 FNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ 384
               L ++    + +       ++S    L  L+             + NLT L  L + 
Sbjct: 130 NLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAI 444
           +N+ +      +  L  +  +  ++N IS   P  I    +L  +  + N L       +
Sbjct: 184 SNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTL 237

Query: 445 SQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP 489
           + L +L+ L+L+ NQ++   P  +  +  LT L L  N ++   P
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 7e-19
 Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 26/255 (10%)

Query: 281 RLKSLILMQNLFSG--PIPEELGACESLTKFRAMKN-QLNGTIPAGIFNLPLLKMIELDH 337
           R+ +L L         PIP  L     L          L G IP  I  L  L  + + H
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 338 NLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMF 397
             +SG IP+ LS   +L  L  +YN ++G +PPSI +L NL  ++   NR +G +P+   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 398 NLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL--------------------- 436
           +   +      S N            ++L  VD SRN L                     
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 437 --SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHF 494
                    +   ++L+ L+L  N++ G +P  +  +  L +L++S+NNL GE+P GG+ 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 495 PAFDEASFAGNPNLC 509
             FD +++A N  LC
Sbjct: 291 QRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 2e-17
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 7/265 (2%)

Query: 133 GTLSKLRVLDMASCNISG--EIPASLSQLKLLDALFLQMN-KLTGHIHPELSGLISLTQL 189
               ++  LD++  N+     IP+SL+ L  L+ L++     L G I P ++ L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELP 249
            ++   ++G +P+  S +K L  +    N L G  P  +   PNL  +   GN  +G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 250 ENLGRNRKLLL-LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTK 308
           ++ G   KL   + +S N++ GKIP            +    L             +   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 309 FRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKI 368
             A  +        G+          L +N + G +P+ L+    L+ L V++NN+ G+I
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLD--LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 369 PPSIGNLTNLNVLSLQNNRFNGELP 393
           P   GNL   +V +  NN+     P
Sbjct: 285 P-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 63/263 (23%), Positives = 98/263 (37%), Gaps = 28/263 (10%)

Query: 41  LEVLDAFNNNFTG--PLPVEIVSLKNLKHLSFGGNY-FSGEIPESYSEIQSLEYLGLNGI 97
           +  LD    N     P+P  + +L  L  L  GG     G IP + +++  L YL +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS 157
            ++G  P FLS +K L  +    +N  +G +PP   +L  L  +      ISG IP S  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDF-SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 158 QL-KLLDALFLQMNKLTGHIHPELSGLISLTQLDLS----------------------LN 194
              KL  ++ +  N+LTG I P  + L                                 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 195 CLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGR 254
                        KNL+ + L  N + G  P  +     L  L V  NN  GE+P+  G 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289

Query: 255 NRKLLLLDVSSNQIEGKIPRDLC 277
            ++  +   ++N+     P   C
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 3/188 (1%)

Query: 38  MTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGI 97
           +  L  LD   N  +G LP  I SL NL  ++F GN  SG IP+SY     L       I
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS--MTI 181

Query: 98  GLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLS 157
             N           NL   ++        G         K       + N        + 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 158 QLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFK 217
             K L+ L L+ N++ G +   L+ L  L  L++S N L GE+P+    L+   +     
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 218 NNLRGPFP 225
           N      P
Sbjct: 301 NKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 3e-18
 Identities = 43/260 (16%), Positives = 97/260 (37%), Gaps = 11/260 (4%)

Query: 232 PNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNL 291
           P+  +L +  N  T     +    + L  L + +N+I    P       +L+ L L +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 292 FSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSIS 351
                 +     + L        ++  ++  G+  + ++++   +    SG         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGM 149

Query: 352 DSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN 411
             L+ +++A  NI   IP  +    +L  L L  N+        +  L  ++ + +S N+
Sbjct: 150 KKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 412 ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQD- 470
           IS     S++    L  +  + N L  ++P  ++  + + ++ L  N ++     D    
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 471 -----MMSLTTLDLSYNNLN 485
                  S + + L  N + 
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 3e-18
 Identities = 51/303 (16%), Positives = 103/303 (33%), Gaps = 16/303 (5%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
            L  +  S   L  +VP+      + +L+ L  N +         +  NL  L +  N  
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
           +   P       KL  L +S NQ++    +     + L+            +   L    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI 364
            +        + +G        +  L  I +    ++  IP+ L    SL +L +  N I
Sbjct: 128 VVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 183

Query: 365 AGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI 424
                 S+  L NL  L L  N  +      + N   +  +++++N +  ++P  ++   
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242

Query: 425 SLTTVDFSRNSLSG------EIPKAISQLRDLSILNLSRNQLT-GPIPTDM-QDMMSLTT 476
            +  V    N++S         P   ++    S ++L  N +    I     + +     
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

Query: 477 LDL 479
           + L
Sbjct: 303 VQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.9 bits (193), Expect = 1e-16
 Identities = 59/307 (19%), Positives = 107/307 (34%), Gaps = 27/307 (8%)

Query: 151 EIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNL 210
           ++P  L        L LQ NK+T     +   L +L  L L  N ++   P +F+ L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 211 SLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEG 270
             + L KN L+            L V +         +   L     ++ L  +  +  G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSG 140

Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
                    ++L  + +     +  IP+  G   SLT+     N++     A +  L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390
             + L  N +S     +L+ +  L +L +  N +  K+P  + +   + V+ L NN  + 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS- 255

Query: 391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLS-GEI-PKAISQLR 448
            +    F                   P   +   S + V    N +   EI P     + 
Sbjct: 256 AIGSNDFCP-----------------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

Query: 449 DLSILNL 455
             + + L
Sbjct: 299 VRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 3e-16
 Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 18/288 (6%)

Query: 128 IPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLT 187
           +P +        +LD+ +  I+         LK L  L L  NK++       + L+ L 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 188 QLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE 247
           +L LS N L     +    L+ L + +     +R    + +     +E L       +G 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGI 141

Query: 248 LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLT 307
                   +KL  + ++   I   IP+ L     L  L L  N  +      L    +L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 308 KFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG- 366
           K     N ++      + N P L+ + L++N L  ++P  L+    +  + +  NNI+  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 367 -----KIPPSIGNLTNLNVLSLQNNRFN-GELPEEMF----NLKVISL 404
                  P       + + +SL +N     E+    F        + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 4e-15
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 10/255 (3%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
            +  +LD  NN  T     +  +LKNL  L    N  S   P +++ +  LE L L+   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNI--SGEIPASL 156
           L          L+ LR       N  T      F  L+++ V+++ +  +  SG    + 
Sbjct: 91  LKELPEKMPKTLQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 157 SQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF 216
             +K L  + +    +T           SLT+L L  N +T     S   L NL+ + L 
Sbjct: 147 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDL 276
            N++       + + P+L  L +  N      P  L  ++ + ++ + +N I      D 
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 277 CKGERLKSLILMQNL 291
           C             +
Sbjct: 263 CPPGYNTKKASYSGV 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 45/256 (17%), Positives = 87/256 (33%), Gaps = 6/256 (2%)

Query: 271 KIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLL 330
           K+P+DL        L L  N  +     +    ++L     + N+++   P     L  L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNG 390
           + + L  N L     +       L   +     +   +   +  +  +  L     + +G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 391 ELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDL 450
                   +K +S I ++  NI+  IP  +    SLT +    N ++     ++  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 451 SILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCL 510
           + L LS N ++      + +   L  L L+ N L                    N    +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 511 PRNVTCLPSIYSAQHS 526
             N  C P   + + S
Sbjct: 258 GSNDFCPPGYNTKKAS 273

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 8e-09
 Identities = 39/208 (18%), Positives = 69/208 (33%), Gaps = 7/208 (3%)

Query: 203 SFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLD 262
             S + +   V   K NL    P  +    +  +L +  N         L    +L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 263 VSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPA 322
           +   ++                L   Q      + +      +LT      N+L      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLG 118

Query: 323 GIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS 382
            +  L  L+ + L  N L    P  L+ +  L +L +A NN+       +  L NL+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 383 LQNNRFNGELPEEMFNLKVISLINVSSN 410
           LQ N     +P+  F   ++    +  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 49/208 (23%), Positives = 70/208 (33%), Gaps = 7/208 (3%)

Query: 131 EFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLD 190
           E   ++    ++    N++  +P  L   K    L L  N L       L     LTQL+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 191 LSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPE 250
           L          +    L  L  + L  N L+              VL V  N  T     
Sbjct: 62  LD--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLG 118

Query: 251 NLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFR 310
            L    +L  L +  N+++   P  L    +L+ L L  N  +      L   E+L    
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 311 AMKNQLNGTIPAGIFNLPLLKMIELDHN 338
             +N L  TIP G F   LL    L  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 49/205 (23%)

Query: 326 NLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN 385
            +     +  D   L+  +P +  +      L ++ N +      ++   T L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 386 NR---------------------------------------------FNGELPEEMFNLK 400
                                                                  +  L 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 401 VISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQL 460
            +  + +  N +    P  ++    L  +  + N+L+      ++ L +L  L L  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 461 TGPIPTDMQDMMSLTTLDLSYNNLN 485
              IP        L    L  N   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 33/208 (15%), Positives = 49/208 (23%), Gaps = 11/208 (5%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           S   +N          P  +     +  +L    N         ++    L  L      
Sbjct: 11  SHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQL-----N 61

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                        +L  LG   +  N    + L          +         +P     
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDAL-FLQMNKLTGHIHPELSGLISLTQLDLSL 193
                       N    +P  L           L  N LT      L+GL +L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLR 221
           N L   +P+ F     L    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 419 SISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLD 478
            +S   S   V+  + +L+  +P  +   +D +IL+LS N L       +     LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 479 LSYNN 483
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 40/205 (19%), Positives = 52/205 (25%), Gaps = 28/205 (13%)

Query: 185 SLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNF 244
             T L LS N L      +      L+ + L  +          G  P L  L +  N  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 245 TGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACE 304
                        L +LDVS N++       L     L+ L L  N      P  L    
Sbjct: 90  QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNI 364
            L K     N L       +  L  L  + L  N L                        
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY----------------------- 185

Query: 365 AGKIPPSIGNLTNLNVLSLQNNRFN 389
              IP        L    L  N + 
Sbjct: 186 --TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 44/206 (21%), Positives = 74/206 (35%), Gaps = 8/206 (3%)

Query: 39  TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG 98
                ++    N T  LP ++   K+   L    N        +      L  L L+   
Sbjct: 10  ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA- 65

Query: 99  LNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQ 158
              T       L  L  + + +    +  +P    TL  L VLD++   ++     +L  
Sbjct: 66  -ELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 159 LKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKN 218
           L  L  L+L+ N+L       L+    L +L L+ N LT       + L+NL  + L +N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 219 NLRGPFPSFVGDYPNLEVLQVWGNNF 244
           +L    P        L    + GN +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 424 ISLTTVDFSRNSLSGE-IPKAISQLRDLSILNLSRNQLTG----PIPTDMQDMMSLTTLD 478
           + + ++D     LS     + +  L+   ++ L    LT      I + ++   +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 479 LSYNNLNGE 487
           L  N L   
Sbjct: 62  LRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 9e-07
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 231 YPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQIEGKIPRDLCKG-----ER 281
              L VL +   + +      L   L  N  L  LD+S+N +       L +        
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 282 LKSLILMQNLFSGPIPEELGA 302
           L+ L+L    +S  + + L A
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 11/101 (10%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 377 NLNVLSLQNNRFNGELPEEMF-NLKVISLINVSSNNISGE----IPTSISGCISLTTVDF 431
           ++  L +Q    +     E+   L+   ++ +    ++      I +++    +L  ++ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 432 SRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM 472
             N L       + Q        + +  L     T     +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 405 INVSSNNISGEIPTSISGCI-SLTTVDFSRNSLSGE----IPKAISQLRDLSILNLSRNQ 459
           +++    +S      +   +     V      L+      I  A+     L+ LNL  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 460 LTGPIPTDMQDMM-----SLTTLDLSYNN 483
           L       +   +      +  L L    
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 421 SGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNLSRNQLTGPIPTDMQDMM---- 472
                L  +  +   +S      +   +     L  L+LS N L       + + +    
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 473 -SLTTLDLSYNNLNGEVPS 490
             L  L L     + E+  
Sbjct: 426 CLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 374 NLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEIPTSISGCI----- 424
             + L VL L +   +      L   +     +  +++S+N +       +   +     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 425 SLTTVDFSRNSLSGEIPKAISQLR----DLSIL 453
            L  +       S E+   +  L      L ++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 396 MFNLKVISLINVSSNNISGE----IPTSISGCISLTTVDFSRNSLSGEIPKAISQ-LRD- 449
                V+ ++ ++  ++S      +  ++    SL  +D S N L       + + +R  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 450 ---LSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
              L  L L     +  +         L  L+    +L
Sbjct: 425 GCLLEQLVLYDIYWSEEME------DRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 21/105 (20%)

Query: 184 ISLTQLDLSLNCLTGE-VPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGN 242
           + +  LD+    L+     E    L+   +V+L    L                      
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TE 41

Query: 243 NFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLIL 287
               ++   L  N  L  L++ SN++       + +G +  S  +
Sbjct: 42  ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 20/114 (17%)

Query: 112 NLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNK 171
           +++ + I                L + +V+ +  C ++      +S              
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------ 50

Query: 172 LTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
                   L    +L +L+L  N L                 ++ K +L+    
Sbjct: 51  --------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 16/99 (16%)

Query: 321 PAGIFNLPLLKMIELDHNLLSGE----IPENLSISDSLNQLKVAYNNIAGKIPPSIG--- 373
                   +L+++ L    +S      +   L  + SL +L ++ N +       +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 374 --NLTNLNVLSLQNNRFNGELP-------EEMFNLKVIS 403
                 L  L L +  ++ E+        ++  +L+VIS
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 10/94 (10%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG----PLPVEIVSLKNLKHLS 69
          + ++ L+I      D    +++  + + +V+   +   T      +   +     L  L+
Sbjct: 2  LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 70 FGGNYFSGEIPESYSEI-----QSLEYLGLNGIG 98
             N           +        ++ L L    
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 39/117 (33%)

Query: 136 SKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNC 195
           S LRVL +A C++S    +SL+                      L    SL +LDLS NC
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAAT--------------------LLANHSLRELDLSNNC 408

Query: 196 LTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENL 252
           L               LV+  +                LE L ++   ++ E+ + L
Sbjct: 409 LGDAGIL--------QLVESVRQPGC-----------LLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 5   NWSSLSKPKMSLKVLNISGNGFQDYFPGQI---VVGMTELEVLDAFNNNFTGPLPVEIVS 61
               L +P   L+VL ++     D     +   ++    L  LD  NN       +++V 
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 62  -----LKNLKHLSFGGNYFSGEIPESYSEIQ 87
                   L+ L     Y+S E+ +    ++
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 9/90 (10%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 330 LKMIELDHNLLSGE-IPENLSISDSLNQLKVAYNNI----AGKIPPSIGNLTNLNVLSLQ 384
           ++ +++    LS     E L +      +++    +       I  ++     L  L+L+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 385 NNRFNGELPEEMFNLKVISLINVSSNNISG 414
           +N         +          +   ++  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 37  GMTELEVLDAFNNNFTG----PLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEI-----Q 87
             + L VL   + + +      L   +++  +L+ L    N           E       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 88  SLEYLGLNGIGLNGTAPVFL-SLLKNLREMYI 118
            LE L L  I  +      L +L K+   + +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 116 MYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGH 175
             + Y N  +  I         L  L++++  +  E+PA   +L+ L       N L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-E 318

Query: 176 IHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSL 212
           +        +L QL +  N L  E P+   ++++L +
Sbjct: 319 VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 68/370 (18%), Positives = 109/370 (29%), Gaps = 37/370 (10%)

Query: 117 YIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHI 176
           Y   ++ +    PP  G   ++ V  +  C           Q   L+   L    L+  +
Sbjct: 6   YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR--------QAHELE---LNNLGLS-SL 53

Query: 177 HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEV 236
                    L  L  S N LT E+PE   +LK+L +       L    P       +   
Sbjct: 54  PELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ 109

Query: 237 LQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI 296
           L+           + +  +   L            I     + E       +  L + P 
Sbjct: 110 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE------LPELQNLPF 163

Query: 297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ 356
              + A  +  K          +I AG   L  L  ++    L +     NL  +     
Sbjct: 164 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP 223

Query: 357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEI 416
             +   N+       +  L        Q+  F          L  +       N  S EI
Sbjct: 224 PSLEALNVRDNYLTDLPELP-------QSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTT 476
            +      SL  ++ S N L  E+P    +L     L  S N L   +P   Q   +L  
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAE-VPELPQ---NLKQ 328

Query: 477 LDLSYNNLNG 486
           L + YN L  
Sbjct: 329 LHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 312 MKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS 371
             N  +  I +     P L+ + + +N L  E+P        L +L  ++N++  ++P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPEL 322

Query: 372 IGNLTNLNVLSLQNNRFNG--ELPEEMFNLKV 401
             NL  L+   ++ N      ++PE + +L++
Sbjct: 323 PQNLKQLH---VEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 332 MIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGE 391
                 N  S EI     +  SL +L V+ N +  ++P     L  L       N    E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-E 318

Query: 392 LPEEMFNLKVISLINVSSNNISG--EIPTSIS 421
           +PE   NLK + +     N +    +IP S+ 
Sbjct: 319 VPELPQNLKQLHV---EYNPLREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 166 FLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFP 225
              +N  +  I        SL +L++S N L  E+P     L+ L        N     P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEVP 320

Query: 226 SFVGDYPNLEVLQVWGNNFTG--ELPENLG 253
                  NL+ L V  N      ++PE++ 
Sbjct: 321 ELPQ---NLKQLHVEYNPLREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
           SL+ LN+S N   +     +      LE L A  N+    +P      +NLK L    N 
Sbjct: 285 SLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP 335

Query: 75  FSGEIPESYSEIQSLEYLGLN 95
              E P+     +S+E L +N
Sbjct: 336 LR-EFPDI---PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 431 FSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS 490
           +  N+ S EI         L  LN+S N+L   +P        L  L  S+N+L  EVP 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVPE 321

Query: 491 GGHFPAFDEASFAGNPNLCLPRNVTCLPSIY 521
                   +     NP    P     +  + 
Sbjct: 322 --LPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 36/263 (13%), Positives = 82/263 (31%), Gaps = 18/263 (6%)

Query: 122 NTYTGGIPPEFGTLSKLRVLDMASCNISGE-IPASLSQLKLLDALFLQMNKLTGHIHPEL 180
            ++      E  +  +++ +D+++  I    +   LSQ   L  L L+  +L+  I   L
Sbjct: 32  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
           +   +L +L+LS      E            L +L  +         V          + 
Sbjct: 92  AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 151

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
             N +G        +        +  +    +         +      Q  F     + L
Sbjct: 152 QLNLSGYRKNLQKSDLS------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
                          +       +  +P LK +++   +  G +     + ++L  L++ 
Sbjct: 206 SLSRC--------YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL---LKEALPHLQIN 254

Query: 361 YNNIAGKIPPSIGNLTNLNVLSL 383
            ++      P+IGN  N  +  +
Sbjct: 255 CSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 13/260 (5%)

Query: 215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGK-IP 273
           L   NL       +     +   +   +     L E+     ++  +D+S++ IE   + 
Sbjct: 7   LTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI 333
             L +  +L++L L     S PI   L    +L +                      ++ 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAG---------KIPPSIGNLTNLNVLSLQ 384
           EL+ +       +++ ++ +     +   N++G                    +++    
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 385 NNRFNGELPEEMFNLKVISLINVSS-NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKA 443
           +     +  +E F L  +  +++S   +I  E    +    +L T+        G +   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 444 ISQLRDLSILNLSRNQLTGP 463
              L  L I       +  P
Sbjct: 245 KEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 427 TTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG 486
            T+D +  +L  ++   +   + +      R+ +  P+         +  +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 487 E 487
            
Sbjct: 61  S 61

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEI 416
           L +A+ ++   +   +  L  +  L L +NR     P       +  L  + +++ + E 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALA---ALRCLEVLQASDNALEN 57

Query: 417 PTSISGCISLTTVDFSRNSL-SGEIPKAISQLRDLSILNLSRNQLTG 462
              ++    L  +    N L      + +     L +LNL  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 380 VLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGE 439
           VL L +      +   +  L +++ +++S N +    P +++    L  +  S N+   E
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LE 56

Query: 440 IPKAISQLRDLSILNLSRNQLTG-PIPTDMQDMMSLTTLDLSYNNLNGE 487
               ++ L  L  L L  N+L        +     L  L+L  N+L  E
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 139 RVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTG 198
           RVL +A  +++  +   L QL L+  L L  N+L     P L+ L  L  L    +    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ--ASDNAL 55

Query: 199 EVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFTGE 247
           E  +  + L  L  + L  N L+       +   P L +L + GN+   E
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 165 LFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPF 224
           L L    LT  +   L  L+ +T LDLS N L    P + +AL+ L ++Q   N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 225 PSFVGDYPNLEVLQVWGNNFTG-ELPENLGRNRKLLLLDVSSNQIEGK 271
                + P L+ L +  N        + L    +L+LL++  N +  +
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 5/159 (3%)

Query: 15  SLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNY 74
               L ++ N         +   +  L  L+   N  TG  P       +++ L  G N 
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 75  FSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGT 134
                 + +  +  L+ L L    ++   P     L +L    +   +            
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL--TSLNLASNPFNCNCHLAWF 147

Query: 135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLT 173
              LR   +         P+ +  +++ D   L  ++  
Sbjct: 148 AEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 7/167 (4%)

Query: 296 IPEELGACESLTKFRAMKNQLNGTIPAGIF-NLPLLKMIELDHNLLSGEIPENLSISDSL 354
           IP ++      T+     N+L      G+F  LP L  +EL  N L+G  P     +  +
Sbjct: 23  IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 355 NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISG 414
            +L++  N I          L  L  L+L +N+ +  +P    +L  ++ +N++SN  + 
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 415 EIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT 461
                      L     +  +     P   S++RD+ I +L  ++  
Sbjct: 141 NCHL-AWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK 183

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 206 ALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSS 265
           AL N   +   K+N+         D   +  L  +G   T    E +     L+ L++  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 266 NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIF 325
           NQI    P           L          I               + +       + + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 326 NL--------------PLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPS 371
            L               L  +  L            L+    L  LK   N I+   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 372 IGNLTNLNVLSLQNNRFNGELP-EEMFNLKVISLIN 406
           + +L NL  + L+NN+ +   P     NL +++L N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDL 479
           ++    LTT+    N +S   P  ++ L +L  ++L  NQ++   P  + +  +L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 480 S 480
           +
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 44/252 (17%)

Query: 135 LSKLRVLDMASCNISGEIP-ASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSL 193
           L+    +     N++  +  A L  +  L A    +  + G     +  L +L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKD 72

Query: 194 NCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLG 253
           N +T       + LKNL+ +   + +                      +    ++    G
Sbjct: 73  NQIT-----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 254 RNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
            +   +L          +I              L            L     LT  +A  
Sbjct: 128 LSNLQVL-----YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373
           N+++   P  + +LP L  + L +N +S   P                          + 
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--------------------------LA 214

Query: 374 NLTNLNVLSLQN 385
           N +NL +++L N
Sbjct: 215 NTSNLFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 47/311 (15%), Positives = 95/311 (30%), Gaps = 32/311 (10%)

Query: 208 KNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDV 263
           K+L L  +   + +    + + +  +++ + + GN    E    L EN+   + L + + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 264 SSNQIE----------GKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMK 313
           S                 + + L K  +L ++ L  N F     E L    S        
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 314 NQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIG 373
              N  +           + EL  N  +   P   SI    N+L+        K   S  
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS------GEIPTSISGCISLT 427
            L  + ++         E            L  +   + +        +  ++    +L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 428 TVDFSRNSLSGEIPKAISQ------LRDLSILNLSRNQLTGPIPTDMQDMM-----SLTT 476
            +  +   LS     A+           L  L L  N++       ++ ++      L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 477 LDLSYNNLNGE 487
           L+L+ N  + E
Sbjct: 307 LELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 37/306 (12%), Positives = 94/306 (30%), Gaps = 33/306 (10%)

Query: 128 IPPEFGTLSKLRVLDMASCNIS-------GEIPASLSQLKLLDALFLQMNKLTGHIHPEL 180
           +         ++ + ++   I         E  AS   L++ +   +   ++   I   L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 181 SGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW 240
             L+        L+ +           +   +  L K+                   ++ 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGER-LKSLILMQNLFSGPIPEE 299
                  + +       L  +    N++E    ++  K  +  + L  ++ + +G  PE 
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 300 LGACESL------------TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPEN 347
           +                   +     +  +  +   + + P L+ + L+  LLS      
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 348 LS------ISDSLNQLKVAYNNIAGKIPPSI-----GNLTNLNVLSLQNNRFN--GELPE 394
           +        +  L  L++ YN I      ++       + +L  L L  NRF+   ++ +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322

Query: 395 EMFNLK 400
           E+  + 
Sbjct: 323 EIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 36/340 (10%), Positives = 106/340 (31%), Gaps = 41/340 (12%)

Query: 162 LDALFLQMNKLTG----HIHPELSGLISLTQLDLSLNCLTGE----VPESFSALKNLSLV 213
           ++   L+++ +T      +   L    S+ ++ LS N +  E    + E+ ++ K+L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 214 QLFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIP 273
           +                      ++         L + L +  KL  + +S N       
Sbjct: 65  EFSDIFTG--------------RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110

Query: 274 RDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI 333
             L       + +    L +  +  + GA  +        N+     P     +     +
Sbjct: 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170

Query: 334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT------NLNVLSLQNNR 387
           E        +  ++  +  ++  ++        +     G              +   + 
Sbjct: 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 230

Query: 388 FNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCI------SLTTVDFSRNSLSGEIP 441
            +  L   + +   +  + ++   +S     ++           L T+    N +  +  
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 442 KAI-----SQLRDLSILNLSRNQLT--GPIPTDMQDMMSL 474
           + +      ++ DL  L L+ N+ +    +  +++++ S 
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 8/100 (8%)

Query: 425 SLTTVDFSRNSLSGE----IPKAISQLRDLSILNLSRNQLTGP----IPTDMQDMMSLTT 476
           S+       ++++ E    +   + +   +  + LS N +       +  ++     L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 477 LDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVTC 516
            + S                    +    P L   R    
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISL 426
           ++   +    + +  +L           ++    +  ++N   ++++  +         L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLN-RRSSMAATLRIIEENIPEL 67

Query: 427 TTVDFSRNSLSG--EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNL 484
            +++ S N L    ++   + +  +L ILNLS N+L      D    + L  L L  N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 485 NGEVPSGGHF 494
           +        +
Sbjct: 128 SDTFRDQSTY 137

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 7/223 (3%)

Query: 241 GNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEEL 300
            +  T E+P +L RN   + L     ++             L+ + + QN     I  ++
Sbjct: 17  ESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 301 GACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVA 360
            +         ++   N           L  +  L  +    +   ++    SL ++ + 
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 361 YNNIAGKIPPSIGNLTN----LNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEI 416
             +          +         +L L  N             ++  L    +NN+    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQ 459
                G      +D SR  +       +  L+ L   +    +
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 425 SLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNN 483
           S        + ++ EIP  +   R+   L     +L             L  +++S N+
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 403 SLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPK-AISQLRDLSILNLSRNQLT 461
           S +  + +    +    + G  +LT +          +    +  L +L  L + ++ L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 462 GPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLC 509
              P        L+ L+LS+N L           +  E   +GNP  C
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 130 PEFGTLSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQL 189
            ++    + R LD+    I   I    + L   DA+    N++          L  L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 190 DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRG-PFPSFVGDYPNLEVLQVWGNNFT--- 245
            ++ N +         AL +L+ + L  N+L        +    +L  L +  N  T   
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 246 GELPENLGRNRKLLLLD 262
                 + +  ++ +LD
Sbjct: 129 HYRLYVIYKVPQVRVLD 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	549
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.8e-28  Score=232.01  Aligned_cols=258  Identities=27%  Similarity=0.494  Sum_probs=191.1

Q ss_pred             CccEEECcCCcccc--cCCccccCCCCccEEeccc-cccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEE
Q 046055          257 KLLLLDVSSNQIEG--KIPRDLCKGERLKSLILMQ-NLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMI  333 (549)
Q Consensus       257 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  333 (549)
                      +++.|+++++.+.+  .+|..+..+++|++|++++ |.+.+..|..+.++++|++|++++|++.+..+..+..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            34445555444443  2344555555555555553 44444455555556666666666666655555556666677777


Q ss_pred             EeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC-CEEEccCCcCCCCCccccccCCCCCEEEccCCcc
Q 046055          334 ELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL-NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNI  412 (549)
Q Consensus       334 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (549)
                      ++++|.+....|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..+++.++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            777777666666677777777777777777777777777666665 67888888887777776666544 4688888888


Q ss_pred             cccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCC
Q 046055          413 SGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGG  492 (549)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  492 (549)
                      .+..+..+..+++++.+++++|.+....+ .+..+++|+.|++++|++++.+|+.+..+++|++|++++|++++.+|+.+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            87788888888899999999998875544 57788999999999999998899999999999999999999999999988


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCC
Q 046055          493 HFPAFDEASFAGNPNLCLPRNVTC  516 (549)
Q Consensus       493 ~~~~l~~l~l~~n~~~~~~~~~~~  516 (549)
                      .+++|+.+++.||+.+|+.+.+.|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCCCCHHHhCCCccccCCCCCCC
Confidence            999999999999999998877766

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.1e-25  Score=217.67  Aligned_cols=190  Identities=28%  Similarity=0.378  Sum_probs=82.3

Q ss_pred             cCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCE
Q 046055          277 CKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQ  356 (549)
Q Consensus       277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  356 (549)
                      ..++.++.+.++++.+.+..+  ...+++++++++.+|.+.+ + ..+..+++|+.+++++|.+.+..  .+..+++|++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            334444444444444433211  2333444444444444431 1 12334444555555554444322  1334444455


Q ss_pred             EEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcC
Q 046055          357 LKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSL  436 (549)
Q Consensus       357 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i  436 (549)
                      |+++++.+.+..  .+..++.++.+.+.+|.+.+  ...+..+++++.|++++|++.+..  .+..+++|++|++++|++
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             eeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            555444444221  13344444555555544432  122344445555555555444321  244445555555555554


Q ss_pred             cccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCC
Q 046055          437 SGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYN  482 (549)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  482 (549)
                      ++ ++ .+..+++|++|++++|++++..|  +..+++|++|+|++|
T Consensus       342 ~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            42 11 24444555555555555543322  444455555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.6e-25  Score=218.47  Aligned_cols=341  Identities=20%  Similarity=0.262  Sum_probs=231.7

Q ss_pred             CCCCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceee
Q 046055          135 LSKLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQ  214 (549)
Q Consensus       135 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  214 (549)
                      +.+|++|+++++.|+. + ..+..+++|++|++++|++++..  .++++++|++|++++|.+.+..  .+..+++|+.++
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccc
Confidence            3455566666665542 1 23455566666666666665432  3566666666666666665332  255666666666


Q ss_pred             cccccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEecccccccc
Q 046055          215 LFKNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSG  294 (549)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  294 (549)
                      +.++.+.+...  ......+.......+.+........................     ..+.............+... 
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccchh-----hhhccccccccccccccccc-
Confidence            66665553222  22344555555555554422221111112222221111111     12333344444444444332 


Q ss_pred             CCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCccccc
Q 046055          295 PIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGN  374 (549)
Q Consensus       295 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  374 (549)
                       .......+++++.+.+.++.+.+..+  ...+++|+++++++|.+...  ..+..++.++.+++++|.+.+..  .+..
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~  261 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSG  261 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccc
Confidence             23456788999999999999875443  45678999999999998854  35778899999999999998543  3778


Q ss_pred             CCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055          375 LTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN  454 (549)
Q Consensus       375 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  454 (549)
                      +++|++|+++++.+.+. + .+..++.++.+++.+|.+.+  ...+..+++++.|++++|++++..  .+..+++|++|+
T Consensus       262 ~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         262 LTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             cccCCEeeccCcccCCC-C-cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence            89999999999998743 3 36788999999999999874  345788999999999999998653  378899999999


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCC
Q 046055          455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGN  505 (549)
Q Consensus       455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n  505 (549)
                      +++|+++. ++ .+..+++|++|++++|++++.+| ...+++|+.+++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99999984 33 58999999999999999996655 778999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=4.3e-26  Score=215.51  Aligned_cols=250  Identities=27%  Similarity=0.422  Sum_probs=199.7

Q ss_pred             CccEEEccCccccc--cCCccccCCCCccEEECcC-CcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEE
Q 046055          233 NLEVLQVWGNNFTG--ELPENLGRNRKLLLLDVSS-NQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKF  309 (549)
Q Consensus       233 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  309 (549)
                      .+++|+++++.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46666666666654  3566677777777777765 56666667777777777777777777776666677777788888


Q ss_pred             EccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCC-CEEEccCceecccCCcccccCCCCCEEEccCCcC
Q 046055          310 RAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSL-NQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRF  388 (549)
Q Consensus       310 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  388 (549)
                      ++..|.+.+.+|..+..++.++.+++++|.+.+..|..+..+..+ +.+++++|++.+..+..+..+.. ..+++.++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            888887777788888888888888888888887777777666664 78889999998888877776654 4799999988


Q ss_pred             CCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccc
Q 046055          389 NGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDM  468 (549)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  468 (549)
                      .+.+|..+..+++++.+++++|.+.+.. ..+..+++|+.|++++|++++.+|..+.++++|++|++++|++++.+|+ +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            8888888888999999999999987544 4678889999999999999988999999999999999999999977774 5


Q ss_pred             cCCCCCCeEeCCCCCCc
Q 046055          469 QDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       469 ~~l~~L~~L~l~~n~~~  485 (549)
                      ..+++|+.+++++|+..
T Consensus       288 ~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TTGGGSCGGGTCSSSEE
T ss_pred             ccCCCCCHHHhCCCccc
Confidence            77889999999999854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=8e-24  Score=199.03  Aligned_cols=247  Identities=19%  Similarity=0.269  Sum_probs=151.1

Q ss_pred             CCccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEe
Q 046055          256 RKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIEL  335 (549)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  335 (549)
                      +.+++|++++|++....+..+..+++|++|++++|.+....+..+..++.|+.+++.+|+++ .+|..  ..+.++.+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccc--hhhhhhhhhc
Confidence            34555555555554333334444555555555555555444455555555566666555554 33332  2345666666


Q ss_pred             ecCcCccccCccccCCCCCCEEEccCceec--ccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCccc
Q 046055          336 DHNLLSGEIPENLSISDSLNQLKVAYNNIA--GKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNIS  413 (549)
Q Consensus       336 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (549)
                      .+|.+....+..+........++...+...  ...+..+..+++|+.+++++|.+. .+|..+  .++|+.|++++|...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCC
Confidence            666666554444555566666666665432  233445666777777777777765 444332  467777777777776


Q ss_pred             ccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCC---
Q 046055          414 GEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPS---  490 (549)
Q Consensus       414 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~---  490 (549)
                      ...+..+..++.++.|++++|.+.+..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|+++...+.   
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc
Confidence            666667777777777777777777666667777777777777777777 4456677777777777777777643221   


Q ss_pred             ----CCCCCCCCccccCCCCCCC
Q 046055          491 ----GGHFPAFDEASFAGNPNLC  509 (549)
Q Consensus       491 ----~~~~~~l~~l~l~~n~~~~  509 (549)
                          ....++|+.++++|||+.+
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcchhcccCCCCEEECCCCcCcc
Confidence                1234677777788887664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.5e-23  Score=197.07  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEEC
Q 046055          376 TNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL  455 (549)
Q Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  455 (549)
                      ++|++|++++|......+..+.+++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            34455555555444444444445555555555555555444445555555555555555555 33445555555555555


Q ss_pred             CCCcccccCCccc------cCCCCCCeEeCCCCCCc
Q 046055          456 SRNQLTGPIPTDM------QDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       456 ~~n~i~~~~~~~l------~~l~~L~~L~l~~n~~~  485 (549)
                      ++|+|+.+....|      ...++|+.|++++|++.
T Consensus       250 s~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            5555553322222      23455666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.5e-24  Score=195.98  Aligned_cols=208  Identities=23%  Similarity=0.203  Sum_probs=179.0

Q ss_pred             CCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEE
Q 046055          302 ACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVL  381 (549)
Q Consensus       302 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  381 (549)
                      ....+.+++..++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            3445566777777777 5676543  5799999999999988778888999999999999999843 3 35678999999


Q ss_pred             EccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          382 SLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      ++++|++. ..+..+..+++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            99999997 56778889999999999999998777888899999999999999999877888889999999999999999


Q ss_pred             ccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 046055          462 GPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFAGNPNLCLPRNVT  515 (549)
Q Consensus       462 ~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~  515 (549)
                      ...+..+..+++|++|+|++|++...+++...+++|+.++++||||.|+|+...
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~  215 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILY  215 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcchHH
Confidence            888888999999999999999999554556778999999999999999997643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=193.67  Aligned_cols=204  Identities=21%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             ccEEECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEcc-CCcCcccCCccCCCCCCCCEEEee
Q 046055          258 LLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAM-KNQLNGTIPAGIFNLPLLKMIELD  336 (549)
Q Consensus       258 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~~~~~~~~~L~~L~l~  336 (549)
                      +++|++++|.++...+..+..++.|+.|+++++.+.......+..++.+..+... .+.+....+..+..+++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            3344444444332222233333334444444333333333333444444444332 222322233444455555555555


Q ss_pred             cCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccC
Q 046055          337 HNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEI  416 (549)
Q Consensus       337 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (549)
                      +|.+....+..+.....|+.+++++|.+++..+..|..+++|+.|++++|.+.+..+..|.++++|+.+++++|.+.+..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            55555444444445555555555555555444445555555556666655555444455555555556666555555555


Q ss_pred             CcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          417 PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       417 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      |..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555555556666666666665555555555556666666665554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=194.43  Aligned_cols=222  Identities=21%  Similarity=0.230  Sum_probs=120.3

Q ss_pred             EECcCCcccccCCccccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEee-cCc
Q 046055          261 LDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELD-HNL  339 (549)
Q Consensus       261 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~-~~~  339 (549)
                      ++.++..+. .+|..+.  +.+++|++++|.++...+.++.++++|++++++++.+....+..+...+.++.+.+. .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            444444444 3333322  456667776666665555556666666666666666654444445555555555543 333


Q ss_pred             CccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcc
Q 046055          340 LSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTS  419 (549)
Q Consensus       340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (549)
                      +....+..+..+++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++....+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            44444445555555555555555555444444555555555555555555333444555555555555555555444455


Q ss_pred             cccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          420 ISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       420 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      |.++++|+.+++++|++++..|..|..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555555555555555555555555555555555555555555444455555555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-20  Score=172.28  Aligned_cols=177  Identities=20%  Similarity=0.167  Sum_probs=110.9

Q ss_pred             CCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEcc
Q 046055          305 SLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQ  384 (549)
Q Consensus       305 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  384 (549)
                      ++++|++++|++.+..+..+..+++|++|++++|.++...  .+..+++|++|++++|++. ..+..+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccccc
Confidence            3444455555444333344445555555555555555332  2344566666666666665 334455666677777777


Q ss_pred             CCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccC
Q 046055          385 NNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      +|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            77666555555666677777777777776555556666777777777777777666666777777777777777777 55


Q ss_pred             CccccCCCCCCeEeCCCCCCc
Q 046055          465 PTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      |+.+..+++|+.|+|++|++.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhHCCCCCCCEEEecCCCCC
Confidence            666666777777777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=9.6e-16  Score=146.42  Aligned_cols=96  Identities=24%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             CCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccccchhccCCCCCceeec
Q 046055           39 TELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYI  118 (549)
Q Consensus        39 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  118 (549)
                      .++++|++++++++ .+|+.   .++|++|++++|.++ .+|..+   .+|+.|++.+|.++... . +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~-~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALS-D-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCC-S-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhh-h-h--ccccccccc
Confidence            35777777777777 45542   457777777777776 556443   46777777776655321 0 0  123555555


Q ss_pred             CCccccCccCCccccCCCCCCEEEccCccCC
Q 046055          119 GYFNTYTGGIPPEFGTLSKLRVLDMASCNIS  149 (549)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  149 (549)
                      ++ +.+. .+| .++.+++|++|+++++.+.
T Consensus       106 ~~-n~l~-~lp-~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         106 SN-NQLE-KLP-ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CS-SCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             cc-cccc-ccc-chhhhccceeecccccccc
Confidence            54 3332 222 2345555666666555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=7.7e-16  Score=147.12  Aligned_cols=312  Identities=26%  Similarity=0.310  Sum_probs=146.4

Q ss_pred             CCCEEEccCccCCccCCccccCCCCCCeEeccCccccccCCccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecc
Q 046055          137 KLRVLDMASCNISGEIPASLSQLKLLDALFLQMNKLTGHIHPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLF  216 (549)
Q Consensus       137 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  216 (549)
                      ++++|+++++.++ .+|..   .++|++|++++|+++.+ +..   ..+|+.|++++|.++.. +. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchh-hh-h--cccccccccc
Confidence            3455555555544 23321   23455555555555422 211   23455555555554421 11 0  1235555555


Q ss_pred             cccCcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEEECcCCcccccCCccccCCCCccEEeccccccccCC
Q 046055          217 KNNLRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLLDVSSNQIEGKIPRDLCKGERLKSLILMQNLFSGPI  296 (549)
Q Consensus       217 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  296 (549)
                      +|.+.. +|. +..+++|++++++++.+.. .+.   ....+..+.+..+....  ...+..++.++.+.+..+......
T Consensus       107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             SSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccccc-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhccccccc--cccccccccceecccccccccccc
Confidence            555542 222 3345555555555555442 111   12344444444443321  223344455555555555443221


Q ss_pred             CccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCC
Q 046055          297 PEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLT  376 (549)
Q Consensus       297 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  376 (549)
                          ......+.+......+. ..+ ....++.++.+++++|..... +   .....+..+.+.++.+... +.   ...
T Consensus       179 ----~~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~-~~---~~~  244 (353)
T d1jl5a_         179 ----DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL-PE---LPQ  244 (353)
T ss_dssp             ----CCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC-CC---CCT
T ss_pred             ----ccccccccccccccccc-ccc-ccccccccccccccccccccc-c---ccccccccccccccccccc-cc---ccc
Confidence                11112233333333332 222 234566677777766655422 1   1234566666666655421 11   233


Q ss_pred             CCCEEEccCCcCCCCCccccccC-CCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEEC
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNL-KVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNL  455 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  455 (549)
                      .+...++..+.+.+     +..+ ......++..+.+.+.    ...+++|++|++++|++. .+|.   .+++|+.|++
T Consensus       245 ~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L  311 (353)
T d1jl5a_         245 SLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIA  311 (353)
T ss_dssp             TCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             cccccccccccccc-----cccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEEC
Confidence            45555555544331     1111 2334455555554421    233567777777777776 3443   3467777777


Q ss_pred             CCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCcccc
Q 046055          456 SRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASF  502 (549)
Q Consensus       456 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l  502 (549)
                      ++|+|+ .+|+.   +++|++|++++|++. .+|..  .++|+.+.+
T Consensus       312 ~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~--~~~L~~L~~  351 (353)
T d1jl5a_         312 SFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI--PESVEDLRM  351 (353)
T ss_dssp             CSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC--CTTCCEEEC
T ss_pred             CCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc--ccccCeeEC
Confidence            777777 34432   346777777777766 44432  334555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.9e-21  Score=191.72  Aligned_cols=404  Identities=17%  Similarity=0.139  Sum_probs=194.0

Q ss_pred             CcccEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcC----CCCccccCCCCcCEEEccCCcceec----cCcccc-
Q 046055           14 MSLKVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTG----PLPVEIVSLKNLKHLSFGGNYFSGE----IPESYS-   84 (549)
Q Consensus        14 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~~~-   84 (549)
                      ++|++||++++++.+.....++..++++++|+|++|.++.    .+...+..+++|++|++++|.+.+.    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4789999999999875555666688999999999998874    2344567888999999999987532    222332 


Q ss_pred             CCCCCCEEEccCCCCccccchhccCCCCCceeecCCccccCccCCccccCCCCCCEEEccCccCCccCCccc----c-CC
Q 046055           85 EIQSLEYLGLNGIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLDMASCNISGEIPASL----S-QL  159 (549)
Q Consensus        85 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l----~-~l  159 (549)
                      ...+|++|++++|.++......                     ++..+..+++|++|++++|.++......+    . ..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~---------------------l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~  140 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGV---------------------LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ  140 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHH---------------------HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             CCCCCCEEECCCCCcccccccc---------------------ccchhhccccccccccccccchhhhhhhhhhcccccc
Confidence            2346888888888776432111                     12233344455555555554432111111    0 01


Q ss_pred             CCCCeEeccCccccccC----CccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCcc
Q 046055          160 KLLDALFLQMNKLTGHI----HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLE  235 (549)
Q Consensus       160 ~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  235 (549)
                      .................    ...+.....++.++++++.........+..  .+                 ........
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~--~l-----------------~~~~~~~~  201 (460)
T d1z7xw1         141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ--GL-----------------KDSPCQLE  201 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--HH-----------------HHSCCCCC
T ss_pred             cccccccccccccchhhhccccccccccccccccccccccccccccccccc--cc-----------------cccccccc
Confidence            11122222211111000    011223345566666655443211000000  00                 00011222


Q ss_pred             EEEccCccccc----cCCccccCCCCccEEECcCCccccc-----CCccccCCCCccEEeccccccccCCCccccCCCCC
Q 046055          236 VLQVWGNNFTG----ELPENLGRNRKLLLLDVSSNQIEGK-----IPRDLCKGERLKSLILMQNLFSGPIPEELGACESL  306 (549)
Q Consensus       236 ~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  306 (549)
                      .+.+.++.+..    .....+...+.++.+++.++.+...     ..........++.+++++|.+......        
T Consensus       202 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--------  273 (460)
T d1z7xw1         202 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------  273 (460)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------
T ss_pred             ccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccc--------
Confidence            33333332221    0111223345555555555544211     011111223444444444433211000        


Q ss_pred             cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccc-----cCCCCCCEEEccCceecccC----CcccccCCC
Q 046055          307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENL-----SISDSLNQLKVAYNNIAGKI----PPSIGNLTN  377 (549)
Q Consensus       307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~  377 (549)
                                  .....+...+.++.+++++|.+.......+     .....|+.+++++|.++...    ...+...++
T Consensus       274 ------------~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~  341 (460)
T d1z7xw1         274 ------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  341 (460)
T ss_dssp             ------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             ------------cccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccc
Confidence                        001111223334444444444332111110     12234555555555554321    122344567


Q ss_pred             CCEEEccCCcCCCCC----ccccc-cCCCCCEEEccCCccccc----CCcccccCCCCcEEECCCCcCcccchhh----h
Q 046055          378 LNVLSLQNNRFNGEL----PEEMF-NLKVISLINVSSNNISGE----IPTSISGCISLTTVDFSRNSLSGEIPKA----I  444 (549)
Q Consensus       378 L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~  444 (549)
                      |++|++++|.+.+..    +..+. ..+.|++|++++|++++.    ++..+..+++|++|+|++|.+++.....    +
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            777777777765322    22222 345678888888877643    2334566788888888888887543322    2


Q ss_pred             h-CCCCCCEEECCCCcccccCCccc----cCCCCCCeE
Q 046055          445 S-QLRDLSILNLSRNQLTGPIPTDM----QDMMSLTTL  477 (549)
Q Consensus       445 ~-~~~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L  477 (549)
                      . ....|+.|++.+|.+.+.....+    ...|+|+.|
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            2 33468888888888764433322    345666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-20  Score=184.12  Aligned_cols=379  Identities=18%  Similarity=0.125  Sum_probs=207.8

Q ss_pred             CCCEEEccCCCCcccc-chhccCCCCCceeecCCccccCc----cCCccccCCCCCCEEEccCccCCccCC----cccc-
Q 046055           88 SLEYLGLNGIGLNGTA-PVFLSLLKNLREMYIGYFNTYTG----GIPPEFGTLSKLRVLDMASCNISGEIP----ASLS-  157 (549)
Q Consensus        88 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~l~-  157 (549)
                      +|+.|++++++++... ...+..+++++.|++.+| .++.    .++..+..+++|++|++++|.++....    ..+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5788888888877543 233556677777777773 3432    223445667777777777777653211    1121 


Q ss_pred             CCCCCCeEeccCccccccC----CccccCCCCCCEEeCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCC
Q 046055          158 QLKLLDALFLQMNKLTGHI----HPELSGLISLTQLDLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPN  233 (549)
Q Consensus       158 ~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  233 (549)
                      ...+|++|++++|.++...    +..+..+++|++|++++|.+.......+..  .+                 ......
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~--~l-----------------~~~~~~  142 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--GL-----------------LDPQCR  142 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--HH-----------------TSTTCC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh--cc-----------------cccccc
Confidence            1235667777666665332    223455666666666666654321111100  00                 000111


Q ss_pred             ccEEEccCccccc----cCCccccCCCCccEEECcCCcccccCCc----cc-cCCCCccEEeccccccccCCC----ccc
Q 046055          234 LEVLQVWGNNFTG----ELPENLGRNRKLLLLDVSSNQIEGKIPR----DL-CKGERLKSLILMQNLFSGPIP----EEL  300 (549)
Q Consensus       234 L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~~~~~~~----~~~  300 (549)
                      .............    .....+.....++.++++++........    .+ ........+.+..+.+.....    ..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  222 (460)
T d1z7xw1         143 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  222 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            1122222211110    0111123344555555555543311000    01 111234445555544332111    123


Q ss_pred             cCCCCCcEEEccCCcCccc-----CCccCCCCCCCCEEEeecCcCccccC----ccccCCCCCCEEEccCceecccCCcc
Q 046055          301 GACESLTKFRAMKNQLNGT-----IPAGIFNLPLLKMIELDHNLLSGEIP----ENLSISDSLNQLKVAYNNIAGKIPPS  371 (549)
Q Consensus       301 ~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~  371 (549)
                      ...+.++.+.+.++.+...     ........+.++.+++++|.+.....    ..+...+.++.+++++|.+.......
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            4456677777777765321     22334456788899998888763321    23345678889999998886322111


Q ss_pred             -----cccCCCCCEEEccCCcCCCCCcc----ccccCCCCCEEEccCCcccccCC----ccc-ccCCCCcEEECCCCcCc
Q 046055          372 -----IGNLTNLNVLSLQNNRFNGELPE----EMFNLKVISLINVSSNNISGEIP----TSI-SGCISLTTVDFSRNSLS  437 (549)
Q Consensus       372 -----~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~-~~~~~L~~L~L~~n~i~  437 (549)
                           ......|+.+++++|.+......    .+...++|++|++++|++.+...    ..+ ...+.|++|+|++|.++
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence                 12345788999999887644333    23456789999999988764322    222 24567899999999887


Q ss_pred             cc----chhhhhCCCCCCEEECCCCcccccCCcc----cc-CCCCCCeEeCCCCCCcc
Q 046055          438 GE----IPKAISQLRDLSILNLSRNQLTGPIPTD----MQ-DMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       438 ~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~----l~-~l~~L~~L~l~~n~~~~  486 (549)
                      +.    +.+.+..+++|++|++++|++++.....    +. ....|+.|++.+|.+..
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            53    3455667788999999999887543322    22 33468889888888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.3e-17  Score=145.13  Aligned_cols=186  Identities=19%  Similarity=0.257  Sum_probs=86.3

Q ss_pred             CCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEE
Q 046055          279 GERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLK  358 (549)
Q Consensus       279 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  358 (549)
                      +.+|+.|++.+|.+.+.  ..+..+++|+++++++|.+.+..  .+..+++++.+++++|.++..  ..+..++.|++++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccc
Confidence            34444444444444432  12444444444444444443211  134445555555555544422  1234445555555


Q ss_pred             ccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcc
Q 046055          359 VAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSG  438 (549)
Q Consensus       359 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~  438 (549)
                      ++++...+.  ..+...+.++.+.++++.+...  ..+...++|+.|++++|.+.+.  ..+.++++|++|++++|++++
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            555444321  1233444555555555544321  1234445555555555554321  224555555555555555553


Q ss_pred             cchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCC
Q 046055          439 EIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLS  480 (549)
Q Consensus       439 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  480 (549)
                      . + .+..+++|++|++++|++++..  .+..+++|+.|+++
T Consensus       188 l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 I-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             C-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            2 1 2455555555555555555332  24555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.6e-17  Score=143.55  Aligned_cols=177  Identities=19%  Similarity=0.196  Sum_probs=119.9

Q ss_pred             CEEEeecCcCccccCccccCCCCCCEEEccCceeccc-CCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccC
Q 046055          331 KMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGK-IPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSS  409 (549)
Q Consensus       331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (549)
                      +.++.++++++.+ |..+  ++.+++|++++|.+++. .+..|..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3555666665533 3333  25677777777777643 345567778888888888877766677777778888888888


Q ss_pred             CcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCC
Q 046055          410 NNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVP  489 (549)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  489 (549)
                      |++....+..|.++++|++|+|++|.|+...+.+|..+++|++|++++|.+... .....-...++...+..+.+....|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeCCC
Confidence            888766677788888888888888888877777778888888888888877622 1111111235556667777665555


Q ss_pred             CCCCCCCCCccccCCCCCCCCCCC
Q 046055          490 SGGHFPAFDEASFAGNPNLCLPRN  513 (549)
Q Consensus       490 ~~~~~~~l~~l~l~~n~~~~~~~~  513 (549)
                      .  .+..++.+++..|...|.+..
T Consensus       167 ~--~l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         167 S--KVRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             T--TTTTSBGGGSCTTTCCCCCC-
T ss_pred             h--hhcCCEeeecCHhhCcCCCCC
Confidence            3  355677788888888887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-17  Score=146.11  Aligned_cols=197  Identities=17%  Similarity=0.073  Sum_probs=91.8

Q ss_pred             CcCEEEccCCcceeccCccccCCCCCCEEEccCCCCccc-cchhccCCCCCceeecCCccccCccCCccccCCCCCCEEE
Q 046055           64 NLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIGLNGT-APVFLSLLKNLREMYIGYFNTYTGGIPPEFGTLSKLRVLD  142 (549)
Q Consensus        64 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  142 (549)
                      ++++|++++|.+....+.+|.++++|++|++++|.+... .+..+..+++++++.+..++.+....+..|..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            444455554444433333444455555555544444332 2223444455555544433344444444555666666666


Q ss_pred             ccCccCCccCC-ccccCCCCCCeEeccCccccccCCccccCCC-CCCEEeCCCCcCccccCccccCCCcCc-eeeccccc
Q 046055          143 MASCNISGEIP-ASLSQLKLLDALFLQMNKLTGHIHPELSGLI-SLTQLDLSLNCLTGEVPESFSALKNLS-LVQLFKNN  219 (549)
Q Consensus       143 l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~  219 (549)
                      +.++.+....+ ..+..++.+..+...++.+..+....+.+++ .++.+++++|.++...+..+.. .++. .+.+.+|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhhhccccccccc
Confidence            66665542211 1122233333334444445544444454443 5666666666666443333332 3333 23345555


Q ss_pred             CcccCCccCCCCCCccEEEccCccccccCCccccCCCCccEE
Q 046055          220 LRGPFPSFVGDYPNLEVLQVWGNNFTGELPENLGRNRKLLLL  261 (549)
Q Consensus       220 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  261 (549)
                      ++...+..+..+++|++|++++|.++...+..+.++++|+.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            554434445556666666666666653333334444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8e-17  Score=143.36  Aligned_cols=190  Identities=16%  Similarity=0.272  Sum_probs=157.9

Q ss_pred             cccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCC
Q 046055          299 ELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNL  378 (549)
Q Consensus       299 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  378 (549)
                      ..+.+.+|+.+++.++.+.. + ..+..+++|++|++++|.+.+..  .+..++.++++++++|.++. + ..+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L  109 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSI  109 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred             CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccc
Confidence            34667899999999999984 4 35789999999999999998654  37889999999999999873 3 347789999


Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      +.++++++...+.  ..+...+.++.+.++++.+..  ...+..+++|+.|++++|.+....  .+.++++|+.|++++|
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN  183 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhch--hhhhccccccccccccccccccch--hhcccccceecccCCC
Confidence            9999999987633  346678899999999998863  334788999999999999997543  4788999999999999


Q ss_pred             cccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCCCccccC
Q 046055          459 QLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAFDEASFA  503 (549)
Q Consensus       459 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l~~l~l~  503 (549)
                      ++++. + .+..+++|++|++++|++++ ++....++.|+.++++
T Consensus       184 ~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI-S-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC-G-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEE
T ss_pred             ccCCC-h-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEee
Confidence            99854 3 48899999999999999985 5557788999998875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-17  Score=146.12  Aligned_cols=218  Identities=13%  Similarity=0.096  Sum_probs=160.6

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cCccccCCCCCCEEEcc
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IPESYSEIQSLEYLGLN   95 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~   95 (549)
                      ++++.++..++. +|..++   +++++|++++|+++...+.+|.++++|++|++++|.+... .+.+|..+++++++.+.
T Consensus        11 ~~i~c~~~~l~~-iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCC-cCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            688888888764 776554   5899999999999865556789999999999999987654 45578899999999876


Q ss_pred             C-CCCccccchhccCCCCCceeecCCccccCccCC-ccccCCCCCCEEEccCccCCccCCccccCCC-CCCeEeccCccc
Q 046055           96 G-IGLNGTAPVFLSLLKNLREMYIGYFNTYTGGIP-PEFGTLSKLRVLDMASCNISGEIPASLSQLK-LLDALFLQMNKL  172 (549)
Q Consensus        96 ~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~l  172 (549)
                      . +.+....+..+.++++|+++++.+ +.+....+ ..+..+..+..+...++.+....+..+.+++ .++.+++.+|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~-~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEES-CCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccch-hhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 567777778889999999999988 44543222 2233455565666677777766666666664 788899999998


Q ss_pred             cccCCccccCCCCCCEE-eCCCCcCccccCccccCCCcCceeecccccCcccCCccCCCCCCccEEEcc
Q 046055          173 TGHIHPELSGLISLTQL-DLSLNCLTGEVPESFSALKNLSLVQLFKNNLRGPFPSFVGDYPNLEVLQVW  240 (549)
Q Consensus       173 ~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  240 (549)
                      ..+....+.. .+++++ ++++|.++...+..|.++++|++|++++|++....+..+.++++|+.+++.
T Consensus       166 ~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 QEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            8766555544 455444 567788886666678899999999999999986655556666666655543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.1e-16  Score=136.11  Aligned_cols=127  Identities=27%  Similarity=0.435  Sum_probs=56.3

Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      ..+++|++|++++|++++..+  ++.+++|++|++++|.+. .++ .+.++++|+.|++++|.....  ..+..+++|+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~  132 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR  132 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             ccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHH
Confidence            334444444444444442211  444444455555444443 222 234444555555544444321  22344455555


Q ss_pred             EECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          429 VDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       429 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      |++++|.+.. . ..+..+++|+.|++.+|++++.  ..+..+++|++|++++|+++
T Consensus       133 L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         133 LELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            5555555442 1 1244445555555555555422  12444555555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.2e-16  Score=136.45  Aligned_cols=164  Identities=23%  Similarity=0.363  Sum_probs=95.4

Q ss_pred             CCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEE
Q 046055          303 CESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLS  382 (549)
Q Consensus       303 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  382 (549)
                      +.+++++++.++.+.. ++ .+..+++|++|++++|.+.+..  .+..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            4566777777776653 22 3556667777777777666433  24556666666666666653 22 355566666666


Q ss_pred             ccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccc
Q 046055          383 LQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTG  462 (549)
Q Consensus       383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~  462 (549)
                      +++|.+. .+ ..+..+++++.+++++|.+.+  +..+..+++|+.+++++|.+++..  .+..+++|+.|++++|++++
T Consensus       119 l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC
Confidence            6666654 22 245556666666666666542  223455666666666666665332  25566666666666666653


Q ss_pred             cCCccccCCCCCCeEeCC
Q 046055          463 PIPTDMQDMMSLTTLDLS  480 (549)
Q Consensus       463 ~~~~~l~~l~~L~~L~l~  480 (549)
                       ++ .+..+++|++|+|+
T Consensus       193 -l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEcc
Confidence             22 35666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=7.5e-17  Score=139.20  Aligned_cols=173  Identities=18%  Similarity=0.217  Sum_probs=135.1

Q ss_pred             cEEEccCCcCcccCCccCCCCCCCCEEEeecCcCcc-ccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccC
Q 046055          307 TKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSG-EIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQN  385 (549)
Q Consensus       307 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  385 (549)
                      +.++.++++++ .+|..+  .+++++|++++|.+++ ..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45677777776 666654  3678999999999875 4456678889999999999999888888899999999999999


Q ss_pred             CcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccch-hhhhCCCCCCEEECCCCcccccC
Q 046055          386 NRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPI  464 (549)
Q Consensus       386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~  464 (549)
                      |++....+..|.++++|++|++++|++....+..|..+++|++|+|++|.+..... .++.  ..++.+.+..+.++...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            99986777788899999999999999998888889999999999999998874322 1222  23556677778877655


Q ss_pred             CccccCCCCCCeEeCCCCCCccc
Q 046055          465 PTDMQDMMSLTTLDLSYNNLNGE  487 (549)
Q Consensus       465 ~~~l~~l~~L~~L~l~~n~~~~~  487 (549)
                      |..   +..++.++++.|++...
T Consensus       166 p~~---l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         166 PSK---VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             STT---TTTSBGGGSCTTTCCCC
T ss_pred             Chh---hcCCEeeecCHhhCcCC
Confidence            544   44577788888888643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=133.49  Aligned_cols=164  Identities=20%  Similarity=0.281  Sum_probs=90.9

Q ss_pred             CCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEE
Q 046055          327 LPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLIN  406 (549)
Q Consensus       327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (549)
                      +.+|++|++++|.+....  .+..+++|++|++++|.+++..  .++.+++|++|++++|+++ .++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            345666666666655332  2455566666666666665322  2445666666666666655 233 355566666666


Q ss_pred             ccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcc
Q 046055          407 VSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       407 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +++|.+..  ...+..++.++.+++++|.+++.  ..+..+++|+.+++++|++++. + .+..+++|++|++++|++. 
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-
T ss_pred             cccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-
Confidence            66665542  23355566666666666666532  2344556666666666666532 2 2555666666666666665 


Q ss_pred             cCCCCCCCCCCCccccC
Q 046055          487 EVPSGGHFPAFDEASFA  503 (549)
Q Consensus       487 ~~p~~~~~~~l~~l~l~  503 (549)
                      .+|....+++|+.++++
T Consensus       192 ~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             BCGGGTTCTTCSEEEEE
T ss_pred             CChhhcCCCCCCEEEcc
Confidence            34445555666665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.8e-15  Score=131.23  Aligned_cols=160  Identities=29%  Similarity=0.415  Sum_probs=100.0

Q ss_pred             CCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccccCccccCCCCCCEEEccCceecccCCcccccCCCCCEEEc
Q 046055          304 ESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGEIPENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSL  383 (549)
Q Consensus       304 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  383 (549)
                      +++++|++.++.+.. + ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.. ++ .+..+++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            344444444444432 1 124455666666666666654432  5566667777777666652 22 3566777777777


Q ss_pred             cCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccccc
Q 046055          384 QNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLTGP  463 (549)
Q Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~  463 (549)
                      ++|.....  ..+..+++|+.|++++|++..  ...+..+++|+.|++++|++++..  .+.++++|++|++++|++++.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC
Confidence            77766522  235667777777777777652  234677778888888888777432  367778888888888887743


Q ss_pred             CCccccCCCCCCeE
Q 046055          464 IPTDMQDMMSLTTL  477 (549)
Q Consensus       464 ~~~~l~~l~~L~~L  477 (549)
                        +.+..+++|++|
T Consensus       188 --~~l~~L~~L~~L  199 (199)
T d2omxa2         188 --SVLAKLTNLESL  199 (199)
T ss_dssp             --GGGGGCTTCSEE
T ss_pred             --ccccCCCCCCcC
Confidence              246677777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=144.93  Aligned_cols=223  Identities=17%  Similarity=0.223  Sum_probs=131.3

Q ss_pred             cEEEccCCCCCCcCChhhhhCCCCCcEEEccCCCCcCCCCccccCCCCcCEEEccCCcceec-cCccccCCCCCCEEEcc
Q 046055           17 KVLNISGNGFQDYFPGQIVVGMTELEVLDAFNNNFTGPLPVEIVSLKNLKHLSFGGNYFSGE-IPESYSEIQSLEYLGLN   95 (549)
Q Consensus        17 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~   95 (549)
                      +.+|++++.+.......+..  ..+..+.++...+.. .........+|++||+++|.+... +...+..+++|++|++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~-~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeecccccccc-chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            58999999876544444442  245677777766653 223334557899999999987633 34457888999999999


Q ss_pred             CCCCccccchhccCCCCCceeecCCccccCccC-CccccCCCCCCEEEccCcc-CCccCC-ccc-cCCCCCCeEeccCcc
Q 046055           96 GIGLNGTAPVFLSLLKNLREMYIGYFNTYTGGI-PPEFGTLSKLRVLDMASCN-ISGEIP-ASL-SQLKLLDALFLQMNK  171 (549)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~-i~~~~~-~~l-~~l~~L~~L~l~~~~  171 (549)
                      +|.+....+..++.+++|++|+++++..+++.. ......+++|++|++++|. +++... ..+ ...++|+.|++.++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            998887777888888999999998866665322 2223467888888888863 432111 112 223567777766542


Q ss_pred             --ccccC-CccccCCCCCCEEeCCCCc-CccccCccccCCCcCceeecccc-cCcccCCccCCCCCCccEEEccCc
Q 046055          172 --LTGHI-HPELSGLISLTQLDLSLNC-LTGEVPESFSALKNLSLVQLFKN-NLRGPFPSFVGDYPNLEVLQVWGN  242 (549)
Q Consensus       172 --l~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  242 (549)
                        +.... ...+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....++.+++|+.|++.++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              22111 1112345566666666543 44333344444555555555553 233222223333444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.5e-15  Score=121.88  Aligned_cols=127  Identities=18%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             cCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcE
Q 046055          349 SISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTT  428 (549)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  428 (549)
                      .++..+++|++++|+++ .++..+..+++|+.|++++|.+. .+ +.+..+++|+.|++++|++....+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34455666666666665 23444455556666666666554 22 23455556666666666655443344445556666


Q ss_pred             EECCCCcCcccc-hhhhhCCCCCCEEECCCCcccccCC---ccccCCCCCCeEe
Q 046055          429 VDFSRNSLSGEI-PKAISQLRDLSILNLSRNQLTGPIP---TDMQDMMSLTTLD  478 (549)
Q Consensus       429 L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~  478 (549)
                      |++++|.+.+.. ...+..+++|++|++++|.++....   ..+..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666555321 1334555556666666665542211   1244455555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-15  Score=139.31  Aligned_cols=181  Identities=19%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             CCCCcEEEccCCCCcCC-CCccccCCCCcCEEEccCCcceeccCccccCCCCCCEEEccCCC-Cccccc-hhccCCCCCc
Q 046055           38 MTELEVLDAFNNNFTGP-LPVEIVSLKNLKHLSFGGNYFSGEIPESYSEIQSLEYLGLNGIG-LNGTAP-VFLSLLKNLR  114 (549)
Q Consensus        38 ~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~  114 (549)
                      ..+|++|++++|.++.. +...+..+++|++|++++|.+.+..+..+.++++|++|++++|. ++.... .....+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666555432 22334555666666666665554444455555666666666542 222111 1123456666


Q ss_pred             eeecCCccccCcc-CCcccc-CCCCCCEEEccCc--cCCcc-CCccccCCCCCCeEeccCcc-ccccCCccccCCCCCCE
Q 046055          115 EMYIGYFNTYTGG-IPPEFG-TLSKLRVLDMASC--NISGE-IPASLSQLKLLDALFLQMNK-LTGHIHPELSGLISLTQ  188 (549)
Q Consensus       115 ~L~l~~~~~~~~~-~~~~~~-~~~~L~~L~l~~~--~i~~~-~~~~l~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~  188 (549)
                      +|++++|..++.. ....+. .++.|+.|+++++  .+++. .......+++|++|++++|. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            6666654433321 111121 2345666666654  23321 11222445666666666543 44334445556666666


Q ss_pred             EeCCCC-cCccccCccccCCCcCceeecccc
Q 046055          189 LDLSLN-CLTGEVPESFSALKNLSLVQLFKN  218 (549)
Q Consensus       189 L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~  218 (549)
                      |++++| .+++.....+..+++|+.|++.++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666664 344444444556666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.5e-15  Score=121.23  Aligned_cols=109  Identities=21%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             cCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEE
Q 046055          374 NLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSIL  453 (549)
Q Consensus       374 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  453 (549)
                      ++.++++|++++|+++ .++..+..+++|+.|++++|++...  ..+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4444555555555554 3333334455555555555555422  224455555555555555553333334445555555


Q ss_pred             ECCCCcccccCC-ccccCCCCCCeEeCCCCCCc
Q 046055          454 NLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       454 ~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~  485 (549)
                      ++++|+++.... ..+..+++|++|++++|++.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            555555542211 23444555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=1.1e-15  Score=145.19  Aligned_cols=240  Identities=18%  Similarity=0.200  Sum_probs=138.1

Q ss_pred             CCCCCccEEEccCcccccc----CCccccCCCCccEEECcCCcccccC---CccccCCCCccEEeccccccccCCCcccc
Q 046055          229 GDYPNLEVLQVWGNNFTGE----LPENLGRNRKLLLLDVSSNQIEGKI---PRDLCKGERLKSLILMQNLFSGPIPEELG  301 (549)
Q Consensus       229 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  301 (549)
                      .....+++|++++|.+...    +...+...++|+.++++++......   +..+.                 .....+.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----------------~l~~~l~   90 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LLLQALL   90 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HHHHHHT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH-----------------HHHHHHh
Confidence            3456667777776665432    2223445566666666655432110   00000                 0012234


Q ss_pred             CCCCCcEEEccCCcCccc----CCccCCCCCCCCEEEeecCcCccccCcc-------------ccCCCCCCEEEccCcee
Q 046055          302 ACESLTKFRAMKNQLNGT----IPAGIFNLPLLKMIELDHNLLSGEIPEN-------------LSISDSLNQLKVAYNNI  364 (549)
Q Consensus       302 ~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~-------------~~~~~~L~~L~l~~n~~  364 (549)
                      .+++|+++++++|.+...    +...+..+++|+.|++++|.+.......             ....+.++.+.+++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            455566666666655432    1222334566777777776654211110             12456777888877776


Q ss_pred             ccc----CCcccccCCCCCEEEccCCcCCCC-----CccccccCCCCCEEEccCCccccc----CCcccccCCCCcEEEC
Q 046055          365 AGK----IPPSIGNLTNLNVLSLQNNRFNGE-----LPEEMFNLKVISLINVSSNNISGE----IPTSISGCISLTTVDF  431 (549)
Q Consensus       365 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L  431 (549)
                      ...    +...+..++.|++|++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            532    223345667888888888877532     223455677888888888877533    2345667888888888


Q ss_pred             CCCcCcccch----hhhhC--CCCCCEEECCCCcccccC----Ccccc-CCCCCCeEeCCCCCCc
Q 046055          432 SRNSLSGEIP----KAISQ--LRDLSILNLSRNQLTGPI----PTDMQ-DMMSLTTLDLSYNNLN  485 (549)
Q Consensus       432 ~~n~i~~~~~----~~~~~--~~~L~~L~l~~n~i~~~~----~~~l~-~l~~L~~L~l~~n~~~  485 (549)
                      ++|.+++...    ..+..  .+.|++|++++|+|....    ...+. ..++|+.|++++|++.
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            8888875432    23332  367888888888886432    23332 4677888888888875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=5.9e-14  Score=110.47  Aligned_cols=101  Identities=21%  Similarity=0.348  Sum_probs=46.9

Q ss_pred             EEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCc
Q 046055          356 QLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNS  435 (549)
Q Consensus       356 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  435 (549)
                      .|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ .+ .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4555555554 222 2445555555555555554 344444455555555555555442 11 24444555555555555


Q ss_pred             Ccccc-hhhhhCCCCCCEEECCCCccc
Q 046055          436 LSGEI-PKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       436 i~~~~-~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      +.+.. ...+..+++|+.|++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            44221 123444444445555544443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=9.4e-14  Score=109.31  Aligned_cols=103  Identities=22%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             CEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCC
Q 046055          379 NVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRN  458 (549)
Q Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  458 (549)
                      |.|++++|.++ .++ .+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            46778888876 444 3677778888888888877 4566677788888888888888743 3 4677788888888888


Q ss_pred             cccccC-CccccCCCCCCeEeCCCCCCcc
Q 046055          459 QLTGPI-PTDMQDMMSLTTLDLSYNNLNG  486 (549)
Q Consensus       459 ~i~~~~-~~~l~~l~~L~~L~l~~n~~~~  486 (549)
                      +++... ...+..+++|+.|++++|++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            887443 2456777888888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.9e-14  Score=136.61  Aligned_cols=250  Identities=19%  Similarity=0.201  Sum_probs=150.6

Q ss_pred             ccccCCCcCceeecccccCccc----CCccCCCCCCccEEEccCcccccc----------CCccccCCCCccEEECcCCc
Q 046055          202 ESFSALKNLSLVQLFKNNLRGP----FPSFVGDYPNLEVLQVWGNNFTGE----------LPENLGRNRKLLLLDVSSNQ  267 (549)
Q Consensus       202 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~~~  267 (549)
                      ..+.....++.|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            4556678999999999987642    234466789999999998754311          12234556788888888887


Q ss_pred             ccccCCc----cccCCCCccEEeccccccccCCCccccCCCCCcEEEccCCcCcccCCccCCCCCCCCEEEeecCcCccc
Q 046055          268 IEGKIPR----DLCKGERLKSLILMQNLFSGPIPEELGACESLTKFRAMKNQLNGTIPAGIFNLPLLKMIELDHNLLSGE  343 (549)
Q Consensus       268 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  343 (549)
                      +......    .+...++|+.|++++|.+.......++.  .+..+         .........+.|+.+.+++|.+...
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccccc
Confidence            7643222    2334566777777766554211111100  00000         0000112345666666666665432


Q ss_pred             cC----ccccCCCCCCEEEccCceeccc-----CCcccccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCC
Q 046055          344 IP----ENLSISDSLNQLKVAYNNIAGK-----IPPSIGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSN  410 (549)
Q Consensus       344 ~~----~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n  410 (549)
                      ..    ..+...+.+++|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            11    2234456777777777776531     334566777888888888876432    2344567788888888888


Q ss_pred             cccccCCc----ccc--cCCCCcEEECCCCcCcccc----hhhhh-CCCCCCEEECCCCcccc
Q 046055          411 NISGEIPT----SIS--GCISLTTVDFSRNSLSGEI----PKAIS-QLRDLSILNLSRNQLTG  462 (549)
Q Consensus       411 ~l~~~~~~----~~~--~~~~L~~L~L~~n~i~~~~----~~~~~-~~~~L~~L~l~~n~i~~  462 (549)
                      .+.+....    .+.  ..+.|++|++++|.|+...    ..++. +.++|+.|++++|++..
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            87644222    222  2467889999999887532    33343 56789999999998863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-13  Score=110.75  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             ccccCCCCcEEECCCC-cCcccchhhhhCCCCCCEEECCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCCCCCCCC
Q 046055          419 SISGCISLTTVDFSRN-SLSGEIPKAISQLRDLSILNLSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSGGHFPAF  497 (549)
Q Consensus       419 ~~~~~~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~l  497 (549)
                      .+..+++|++|++++| .++...+..|.++++|+.|++++|+|+.+.+..|..+++|++|+|++|++....+..-....+
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL  105 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred             cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccc
Confidence            3444444555555433 244333444555555555555555555444455555555555555555555333333333345


Q ss_pred             CccccCCCCCCCCCCC
Q 046055          498 DEASFAGNPNLCLPRN  513 (549)
Q Consensus       498 ~~l~l~~n~~~~~~~~  513 (549)
                      +.+++++||+.|+|..
T Consensus       106 ~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3         106 QELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CEEECCSSCCCCCGGG
T ss_pred             cccccCCCcccCCchH
Confidence            5566666666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=6.4e-14  Score=120.48  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=82.0

Q ss_pred             ccccCCCCCCEEEccCceecccCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCC
Q 046055          346 ENLSISDSLNQLKVAYNNIAGKIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCIS  425 (549)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  425 (549)
                      ..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.....+++|+.|++++|.+...  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            345566677777777777763 33 4667777777777777776 4454444456677777777777632  34666777


Q ss_pred             CcEEECCCCcCcccch-hhhhCCCCCCEEECCCCcccccCCcc----------ccCCCCCCeEe
Q 046055          426 LTTVDFSRNSLSGEIP-KAISQLRDLSILNLSRNQLTGPIPTD----------MQDMMSLTTLD  478 (549)
Q Consensus       426 L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~----------l~~l~~L~~L~  478 (549)
                      |+.|++++|++++... ..+..+++|+.|++++|.+....+..          +..+|+|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7777777777764321 45677777777777777765332221          44567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-11  Score=101.65  Aligned_cols=108  Identities=20%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             CCCCEEEccCCcCCCCCccccccCCCCCEEEccCCc-ccccCCcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEE
Q 046055          376 TNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNN-ISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILN  454 (549)
Q Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  454 (549)
                      ...+.++..++.+. ..|..+..+++|++|++.+|+ +....+..|.++++|+.|++++|+|+.+.+.+|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34455666666665 455666667777777776553 6655556677777777777777777766677777777777777


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCCCCCCc
Q 046055          455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLN  485 (549)
Q Consensus       455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  485 (549)
                      |++|+++...+..+.. .+|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            7777777444444443 35777888877774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1e-13  Score=119.18  Aligned_cols=120  Identities=19%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             cCCcccccCCCCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccchhhhhC
Q 046055          367 KIPPSIGNLTNLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEIPKAISQ  446 (549)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  446 (549)
                      .++..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+. .++..+..+++|+.|++++|.++..  ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            34556888999999999999998 444 5888999999999999997 4555556677899999999999853  35788


Q ss_pred             CCCCCEEECCCCcccccCC-ccccCCCCCCeEeCCCCCCcccCCCC
Q 046055          447 LRDLSILNLSRNQLTGPIP-TDMQDMMSLTTLDLSYNNLNGEVPSG  491 (549)
Q Consensus       447 ~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~  491 (549)
                      +++|+.|++++|+++.... ..+..+++|+.|++++|++....+..
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccc
Confidence            8999999999999985432 46888999999999999998666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.4e-09  Score=85.08  Aligned_cols=63  Identities=21%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             CCCCCEEEccCCcccccC--CcccccCCCCcEEECCCCcCcccchhhhhCCCCCCEEECCCCccc
Q 046055          399 LKVISLINVSSNNISGEI--PTSISGCISLTTVDFSRNSLSGEIPKAISQLRDLSILNLSRNQLT  461 (549)
Q Consensus       399 l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~  461 (549)
                      +++|++|++++|+++...  +..+..+++|+.|++++|.|.+..+-.+.....|+.|++++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            444444444444443221  122334455555555555554332222223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.1e-08  Score=84.15  Aligned_cols=120  Identities=22%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             CCCEEEccCCcCCCCCccccccCCCCCEEEccCCcccccCCcccccCCCCcEEECCCCcCcccc--hhhhhCCCCCCEEE
Q 046055          377 NLNVLSLQNNRFNGELPEEMFNLKVISLINVSSNNISGEIPTSISGCISLTTVDFSRNSLSGEI--PKAISQLRDLSILN  454 (549)
Q Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~  454 (549)
                      ..+.|++++....   + .+..+..+..+....+... .....+..+++|++|+|++|+|++..  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455666554432   1 1222333333444443332 33344567899999999999998643  45678899999999


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCCCCCCcccCCCC--------CCCCCCCccc
Q 046055          455 LSRNQLTGPIPTDMQDMMSLTTLDLSYNNLNGEVPSG--------GHFPAFDEAS  501 (549)
Q Consensus       455 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--------~~~~~l~~l~  501 (549)
                      +++|.|+...+-.......|+.+++++|++.......        ..+|+|+.++
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999998554433344567999999999998554432        4678888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=1.2e-06  Score=71.84  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             CCCCCEEEccCC-cCCCC----CccccccCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----ch
Q 046055          375 LTNLNVLSLQNN-RFNGE----LPEEMFNLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IP  441 (549)
Q Consensus       375 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~  441 (549)
                      .++|++|+++++ .+...    +...+...+.|+.|++++|.+.+..    ...+...++|++|+|++|.+++.    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455555555543 23211    1122334455666666666554221    12344456677777777766643    22


Q ss_pred             hhhhCCCCCCEEECCCCccccc-------CCccccCCCCCCeEeCCCCC
Q 046055          442 KAISQLRDLSILNLSRNQLTGP-------IPTDMQDMMSLTTLDLSYNN  483 (549)
Q Consensus       442 ~~~~~~~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~L~l~~n~  483 (549)
                      .++...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3445556677777776654422       22334456667777766554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=4.1e-06  Score=68.59  Aligned_cols=90  Identities=20%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             ccccCCCCCEEEccCCcCCCC----CccccccCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc---
Q 046055          371 SIGNLTNLNVLSLQNNRFNGE----LPEEMFNLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE---  439 (549)
Q Consensus       371 ~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~---  439 (549)
                      .+...++|++|++++|.+...    +...+...+.|+.|++++|.+.+..    ..++...++|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            344555666666666655422    2233344566777777777665322    22455667788888877754422   


Q ss_pred             ----chhhhhCCCCCCEEECCCCcc
Q 046055          440 ----IPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       440 ----~~~~~~~~~~L~~L~l~~n~i  460 (549)
                          +...+...++|+.|+++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                344556678888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.61  E-value=6.3e-06  Score=67.45  Aligned_cols=86  Identities=12%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             cCCCCCEEEccCCcccccC----CcccccCCCCcEEECCCCcCccc----chhhhhCCCCCCEEECC--CCcccc----c
Q 046055          398 NLKVISLINVSSNNISGEI----PTSISGCISLTTVDFSRNSLSGE----IPKAISQLRDLSILNLS--RNQLTG----P  463 (549)
Q Consensus       398 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~l~--~n~i~~----~  463 (549)
                      ..++|++|++++|.+....    ...+...++++.+++++|.++..    +...+...++|+.+++.  +|.+.+    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            4455555555555543221    12334455666666666665532    22344555666654443  344432    2


Q ss_pred             CCccccCCCCCCeEeCCCCC
Q 046055          464 IPTDMQDMMSLTTLDLSYNN  483 (549)
Q Consensus       464 ~~~~l~~l~~L~~L~l~~n~  483 (549)
                      +...+...+.|+.|+++.+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            22334455666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=3.9e-05  Score=62.53  Aligned_cols=110  Identities=20%  Similarity=0.235  Sum_probs=62.0

Q ss_pred             CCCCCEEEccC-ceeccc----CCcccccCCCCCEEEccCCcCCCCC----ccccccCCCCCEEEccCCccccc----CC
Q 046055          351 SDSLNQLKVAY-NNIAGK----IPPSIGNLTNLNVLSLQNNRFNGEL----PEEMFNLKVISLINVSSNNISGE----IP  417 (549)
Q Consensus       351 ~~~L~~L~l~~-n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~  417 (549)
                      .+.|++|++++ +.++..    +..++...++|++|++++|.+....    ...+...++++.+++++|.+...    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            34555555554 233211    2233445566667777766654322    22334556777777777766432    22


Q ss_pred             cccccCCCCcEEECC--CCcCcc----cchhhhhCCCCCCEEECCCCcc
Q 046055          418 TSISGCISLTTVDFS--RNSLSG----EIPKAISQLRDLSILNLSRNQL  460 (549)
Q Consensus       418 ~~~~~~~~L~~L~L~--~n~i~~----~~~~~~~~~~~L~~L~l~~n~i  460 (549)
                      ..+...++|+.++|+  +|.+++    .+...+...++|+.|++..+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            355667778775554  456654    2445566778888888877654