Citrus Sinensis ID: 046061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKAADRLRKSSNEERFETWWL
cccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccEEcc
mdseeivyrplllgldshsripdlsSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGqaygakkySAMGLICQRAIVLHLGAAVILTFLYWysspilraigqsdtiaEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYivlspsckdtwtglsikafrgiwPYFKLTVASAVMLCLEIWYNQGLVLISglltnptisldSISICLNYLNWDMQFMLGLSTAASIRVSNelgaahprvAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKAADRLRKSsneerfetwwl
MDSEEIVYRPlllgldshsriPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTartnwntevekaadrlrkssneerfetwwl
MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRllgwesrllwllswasIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYgllgaaltlglswwllVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMiigvllqtttliiltARTNWNTEVEKAADRLRKSSNEERFETWWL
*****IVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEV*********************
****************************************RWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEK*******************
MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKA******************
**************************AVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKAADRLRKSSNEERF**WW*
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MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKAADRLRKSSNEERFETWWL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query505 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA yes no 0.986 0.982 0.756 0.0
Q9SIA5476 MATE efflux family protei no no 0.912 0.968 0.353 9e-76
Q9SIA3476 MATE efflux family protei no no 0.924 0.981 0.354 7e-75
Q8GXM8476 MATE efflux family protei no no 0.857 0.909 0.355 2e-72
Q8RWF5483 MATE efflux family protei no no 0.855 0.894 0.361 2e-71
Q9SIA4476 MATE efflux family protei no no 0.926 0.983 0.355 5e-71
Q9SIA1477 MATE efflux family protei no no 0.922 0.976 0.336 6e-69
Q9LUH2477 MATE efflux family protei no no 0.849 0.899 0.344 1e-68
Q9LUH3469 MATE efflux family protei no no 0.855 0.921 0.326 4e-66
Q8K0H1567 Multidrug and toxin extru yes no 0.859 0.765 0.302 8e-45
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/501 (75%), Positives = 434/501 (86%), Gaps = 3/501 (0%)

Query: 1   MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHR--PVALRWWPRLLGWESRLLWLLS 58
           M S E  Y PLL  L S S+I + SS  IEEFL  R   V  RWW +L  WES+LLW LS
Sbjct: 1   MSSTE-TYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLS 59

Query: 59  WASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQ 118
            ASIVVS+ NYMLSFVT+MFTGHLG+L+LAGASIA+VGIQGLAYGIMLGMASAVQTVCGQ
Sbjct: 60  GASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQ 119

Query: 119 AYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLI 178
           AYGA++YS+MG+ICQRA+VLHL AAV LTFLYWYS PIL+ +GQS  IA +GQ+FARG+I
Sbjct: 120 AYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMI 179

Query: 179 PQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGL 238
           PQ+YAFA++CPMQRFLQAQNIVNPLAYMS+GVFLLH LLTW+V  VLD+GLLGAAL L  
Sbjct: 180 PQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSF 239

Query: 239 SWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVL 298
           SWWLLV +NG+YI++SP+CK+TWTG S +AFRGIWPYFKLTVASAVMLCLEIWYNQGLV+
Sbjct: 240 SWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query: 299 ISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVN 358
           ISGLL+NPTISLD+ISIC+ YLNWDMQFMLGLS A S+RVSNELGA +PRVA  SV+VVN
Sbjct: 300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query: 359 ATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAI 418
            T +LIS V C IVL+FRVGLSK FTSD+EVI AVS+L PLLA+S+FLNGIQPILSGVAI
Sbjct: 360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query: 419 GSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTART 478
           GSGWQAVVAYVNL TYY+IGLPIGC+LGFKT LGVAGIWWGMI GV+LQT TLI+LT +T
Sbjct: 420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKT 479

Query: 479 NWNTEVEKAADRLRKSSNEER 499
           NW +EVE AA R++ S+ E +
Sbjct: 480 NWTSEVENAAQRVKTSATENQ 500
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
442558067506 TT12a [Gossypium arboreum] 0.986 0.984 0.861 0.0
225446759504 PREDICTED: protein TRANSPARENT TESTA 12 0.988 0.990 0.840 0.0
308220270514 TT12-2 MATE transporter [Malus x domesti 0.984 0.966 0.809 0.0
224085425505 predicted protein [Populus trichocarpa] 0.980 0.980 0.822 0.0
224085427505 predicted protein [Populus trichocarpa] 0.980 0.980 0.818 0.0
308220266505 TT12-1 MATE transporter [Malus x domesti 0.990 0.990 0.822 0.0
224062585503 predicted protein [Populus trichocarpa] 0.976 0.980 0.830 0.0
356553625505 PREDICTED: protein TRANSPARENT TESTA 12- 0.978 0.978 0.811 0.0
15231620507 protein TRANSPARENT TESTA 12 [Arabidopsi 0.986 0.982 0.756 0.0
212641724507 transparent testa 12 isoform 2 [Brassica 0.986 0.982 0.762 0.0
>gi|442558067|gb|AGC55236.1| TT12a [Gossypium arboreum] Back     alignment and taxonomy information
 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/498 (86%), Positives = 469/498 (94%)

Query: 1   MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHRPVALRWWPRLLGWESRLLWLLSWA 60
           M S    Y+PLLLGLDSHSRIPDLSS  IEEFL+HRP+ALRWWPRL+ WESRLLWLLS +
Sbjct: 1   MGSAAPEYQPLLLGLDSHSRIPDLSSVAIEEFLQHRPIALRWWPRLVAWESRLLWLLSGS 60

Query: 61  SIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAY 120
           SIV+SIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 61  SIVLSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAY 120

Query: 121 GAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQ 180
           GAK+YSAMG+ICQRAI+LHLGAAV+LTFLYW+S  +L+AIGQ+++IA+QGQVF+RGLIPQ
Sbjct: 121 GAKQYSAMGIICQRAIILHLGAAVLLTFLYWFSGDVLQAIGQTESIAQQGQVFSRGLIPQ 180

Query: 181 LYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGLLGAALTLGLSW 240
           +YAFAISCPMQRFLQAQNIVNPLA+MS+G+FL+H+LLTW+VV VL  GLLGAALTL LSW
Sbjct: 181 IYAFAISCPMQRFLQAQNIVNPLAFMSIGIFLVHVLLTWLVVNVLGCGLLGAALTLSLSW 240

Query: 241 WLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVLIS 300
           W LV+INGLYIVLSPSCK+TW+GLS +AF GIWPYFKLTVASAVMLCLEIWYNQGLVLIS
Sbjct: 241 WFLVVINGLYIVLSPSCKETWSGLSFRAFTGIWPYFKLTVASAVMLCLEIWYNQGLVLIS 300

Query: 301 GLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNAT 360
           GLL+NPTI+LDSISIC+NYLNWDMQFMLGLS AAS+RVSNELGA HPRVAKFSV VVN T
Sbjct: 301 GLLSNPTIALDSISICMNYLNWDMQFMLGLSAAASVRVSNELGAGHPRVAKFSVFVVNGT 360

Query: 361 GILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGS 420
            ILISIVF AIVLIFRVGLSK FTSDSEVIEAVS+LTPLLAISVFLNGIQPILSGVAIGS
Sbjct: 361 SILISIVFSAIVLIFRVGLSKAFTSDSEVIEAVSDLTPLLAISVFLNGIQPILSGVAIGS 420

Query: 421 GWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNW 480
           GWQA+VAYVNLATYYIIGLPIGC+LGFKT LGVAGIWWGMIIGVLLQT TL++LTA TNW
Sbjct: 421 GWQAIVAYVNLATYYIIGLPIGCVLGFKTSLGVAGIWWGMIIGVLLQTATLVVLTATTNW 480

Query: 481 NTEVEKAADRLRKSSNEE 498
           N EVEKAADRL+KS+NEE
Sbjct: 481 NKEVEKAADRLKKSANEE 498

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446759|ref|XP_002282932.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] gi|302143501|emb|CBI22062.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|308220270|gb|ADO22711.1| TT12-2 MATE transporter [Malus x domestica] gi|308220272|gb|ADO22712.1| TT12-2 MATE transporter [Malus x domestica] Back     alignment and taxonomy information
>gi|224085425|ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|222857020|gb|EEE94567.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085427|ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|222857021|gb|EEE94568.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|308220266|gb|ADO22709.1| TT12-1 MATE transporter [Malus x domestica] gi|308220268|gb|ADO22710.1| TT12-1 MATE transporter [Malus x domestica] Back     alignment and taxonomy information
>gi|224062585|ref|XP_002300856.1| predicted protein [Populus trichocarpa] gi|222842582|gb|EEE80129.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553625|ref|XP_003545155.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|15231620|ref|NP_191462.1| protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] gi|27151710|sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 gi|7529746|emb|CAB86931.1| putative protein [Arabidopsis thaliana] gi|13624643|emb|CAC36941.1| multidrug transporter-like protein [Arabidopsis thaliana] gi|21618298|gb|AAM67348.1| unknown [Arabidopsis thaliana] gi|332646342|gb|AEE79863.1| protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|212641724|gb|ACJ36211.1| transparent testa 12 isoform 2 [Brassica napus] gi|212641728|gb|ACJ36212.1| transparent testa 12 isoform 2 [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
TAIR|locus:2077725507 TT12 "AT3G59030" [Arabidopsis 0.986 0.982 0.686 2.9e-183
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.984 0.982 0.437 1.6e-109
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.851 0.858 0.446 5.3e-104
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.851 0.854 0.430 8.2e-99
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.861 0.873 0.424 8.4e-97
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.861 0.87 0.422 1.1e-96
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.855 0.797 0.413 6.3e-92
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.853 0.825 0.414 3.5e-91
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.853 0.890 0.432 3.1e-90
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.853 0.836 0.405 9.9e-87
TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 344/501 (68%), Positives = 396/501 (79%)

Query:     1 MDSEEIVYRPLLLGLDSHSRIPDLSSAVIEEFLEHR--PVALRWWPRXXXXXXXXXXXXX 58
             M S E  Y PLL  L S S+I + SS  IEEFL  R   V  RWW +             
Sbjct:     1 MSSTE-TYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLS 59

Query:    59 XXXIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQ 118
                IVVS+ NYMLSFVT+MFTGHLG+L+LAGASIA+VGIQGLAYGIMLGMASAVQTVCGQ
Sbjct:    60 GASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQ 119

Query:   119 AYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLI 178
             AYGA++YS+MG+ICQRA+VLHL AAV LTFLYWYS PIL+ +GQS  IA +GQ+FARG+I
Sbjct:   120 AYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMI 179

Query:   179 PQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYXXXXXXXXXXX 238
             PQ+YAFA++CPMQRFLQAQNIVNPLAYMS+GVFLLH LLTW+V  VLD+           
Sbjct:   180 PQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSF 239

Query:   239 XXXXXVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLEIWYNQGLVL 298
                  V +NG+YI++SP+CK+TWTG S +AFRGIWPYFKLTVASAVMLCLEIWYNQGLV+
Sbjct:   240 SWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query:   299 ISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVN 358
             ISGLL+NPTISLD+ISIC+ YLNWDMQFMLGLS A S+RVSNELGA +PRVA  SV+VVN
Sbjct:   300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query:   359 ATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAI 418
              T +LIS V C IVL+FRVGLSK FTSD+EVI AVS+L PLLA+S+FLNGIQPILSGVAI
Sbjct:   360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query:   419 GSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMXXXXXXXXXXXXXXXART 478
             GSGWQAVVAYVNL TYY+IGLPIGC+LGFKT LGVAGIWWGM                +T
Sbjct:   420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKT 479

Query:   479 NWNTEVEKAADRLRKSSNEER 499
             NW +EVE AA R++ S+ E +
Sbjct:   480 NWTSEVENAAQRVKTSATENQ 500
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0010231 "maintenance of seed dormancy" evidence=IMP
GO:0022857 "transmembrane transporter activity" evidence=ISS
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP
GO:0015299 "solute:hydrogen antiporter activity" evidence=IDA
GO:0006863 "purine nucleobase transport" evidence=RCA
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYT3TT12_ARATHNo assigned EC number0.75640.98610.9822yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018841001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (504 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-159
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-52
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-49
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-45
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-34
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-27
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-25
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-24
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 5e-24
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-23
pfam01554161 pfam01554, MatE, MatE 2e-23
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-22
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-22
pfam01554161 pfam01554, MatE, MatE 7e-22
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-17
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 5e-16
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-10
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 5e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 7e-08
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-07
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 1e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 3e-06
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 5e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-05
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 8e-04
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  459 bits (1183), Expect = e-159
 Identities = 198/437 (45%), Positives = 286/437 (65%), Gaps = 1/437 (0%)

Query: 50  ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 109
           E++ L  L+   ++ S+  Y LS V+++F GHLG LELA AS+AS       + I+LG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 110 SAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQ 169
           SA+ T+CGQA+GAK Y  +G+  QRA+V+ L   V ++ L+  + PIL  +GQ   IA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 170 GQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVFVLDYGL 229
              + R LIP L+A+A+  P++R+LQAQ IV PL Y+S+   LL+ILL +++VFVL  G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 230 LGAALTLGLSWWLLVIINGLYIVLSPSCKDTWTGLSIKAFRGIWPYFKLTVASAVMLCLE 289
           +GAAL   +S+WL+V++  LYI  S   K TW G S +AFRG  P+ KL + SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 290 IWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRV 349
            W  + LVL++GLL   T++L + SICL   +      LG+S AAS+RV NELGA +P+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 350 AKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGI 409
           AK + IV     ++I +V   ++L+ R   + LFTSD EVI  V++L P+LA+    +G+
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 410 QPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTILGVAGIWWGMIIGVLLQTT 469
           Q +LSGV  G G Q + AYVNL  YY+IGLP+G +L F   LG+ G+W G+I G++LQ  
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 470 TLIILTARTNWNTEVEK 486
            L+++  RT+W+ E EK
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 505
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.87
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.86
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.77
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.7
PRK10459492 colanic acid exporter; Provisional 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
PRK15099416 O-antigen translocase; Provisional 99.62
COG2244480 RfbX Membrane protein involved in the export of O- 99.54
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.42
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.28
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.28
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.91
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.48
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.47
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.35
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.14
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.1
COG4267467 Predicted membrane protein [Function unknown] 98.09
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.96
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.85
COG4267 467 Predicted membrane protein [Function unknown] 80.82
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-56  Score=443.88  Aligned_cols=434  Identities=24%  Similarity=0.366  Sum_probs=411.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061           50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG  129 (505)
Q Consensus        50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~  129 (505)
                      ..|+++++++|++++++.+.+++++|++++||+|++++++.+++.++.. +......|++.|.++.+||++|+||+++++
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~   93 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRKKAK   93 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchHHHH
Confidence            7899999999999999999999999999999999999999999999998 457788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 046061          130 LICQRAIVLHLGAAVILTF-LYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSV  208 (505)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i  208 (505)
                      +..++++.+.++++++..+ .+.+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+.+|+.|+++.+++.++
T Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~  173 (455)
T COG0534          94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILL  173 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            9999999999999988777 999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhhhCHHHHHHHHHHHHHH
Q 046061          209 GVFLLHILLTWIVVFV-LD-YGLLGAALTLGLSWWLLVIINGLYIVLSPS-CKDTWTGLSIKAFRGIWPYFKLTVASAVM  285 (505)
Q Consensus       209 ~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~p~~~~  285 (505)
                      +++++|++++++++++ ++ +|+.|+++||++++++..++..+++.++++ ......+..+.+++.+|++++.|+|.+++
T Consensus       174 ~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~  253 (455)
T COG0534         174 LGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLE  253 (455)
T ss_pred             HHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHH
Confidence            9999999999999998 57 999999999999999999999999998854 22222233345568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 046061          286 LCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGILIS  365 (505)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~  365 (505)
                      +..+...+...+.++++++  ++.+|+|+++.++.++.++++.+++++..|.+++++|+||.|++++..+.+.+++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~  331 (455)
T COG0534         254 SLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIA  331 (455)
T ss_pred             HHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997  79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHHHH
Q 046061          366 IVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCIL  445 (505)
Q Consensus       366 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l  445 (505)
                      +..+++++++++++.++|++|+|+.+.+..++++....+++++++.+..+++||.||++.+++.++.+.|.+.+|+.+++
T Consensus       332 ~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l  411 (455)
T COG0534         332 LLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLL  411 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 046061          446 GFKTILGVAGIWWGMIIGVLLQTTTLIILTARTNWNTEVEKA  487 (505)
Q Consensus       446 ~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (505)
                      .+.. +|..|+|+++.+++.++.++..+++++++|+++..+.
T Consensus       412 ~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         412 GFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             hhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            8776 9999999999999999999999999999998876654

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-10
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 173/415 (41%), Gaps = 26/415 (6%)
Query: 62  IVVSIFNYMLSFVTLMFTGHLGALELAGASIA-SVGIQGLAYGIMLGMASAVQTVCGQAY 120
           ++ S+    + FV  +  G + A+++A  SIA S+ +  + +G+  G+  A+  V  Q  
Sbjct: 22  LIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV--GLLMALVPVVAQLN 79
Query: 121 GAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQ 180
           GA +   +     + ++L L  +V +  + + +  I+R +   + +A +   +   +I  
Sbjct: 80  GAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFA 139
Query: 181 LYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVF----VLDYXXXXXXXXX 236
           + A+ +   ++ F    ++  P   +     LL+I L WI V+      +          
Sbjct: 140 VPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVAT 199
Query: 237 XXXXXXXVIINGLYIVLSPSCKDTWTGLSIKAFRGIWP-----YFKLTVASAVMLCLEIW 291
                  +++   YIV S            + F    P      F+L    A  L  E+ 
Sbjct: 200 AIVYWIMLLLLLFYIVTSKRLAHVKV---FETFHKPQPKELIRLFRLGFPVAAALFFEV- 255
Query: 292 YNQGLVLISGLLTNP--TISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRV 349
               L  +  LL  P  +  + +  + LN+ +    F + +  A SIRV ++LG    + 
Sbjct: 256 ---TLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKG 312
Query: 350 AKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGI 409
           A  +  V   TG+  + +   + ++FR  ++ L+T +  V+     L    AI   ++ +
Sbjct: 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAV 372
Query: 410 QPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGF-----KTILGVAGIWWG 459
           Q + +G   G      + +    +Y+++GLP G ILG      +  LG  G W G
Sbjct: 373 QVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLG 427

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 8e-73
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  237 bits (606), Expect = 8e-73
 Identities = 94/444 (21%), Positives = 191/444 (43%), Gaps = 17/444 (3%)

Query: 50  ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 109
           E+  L  L+   ++ S+    + FV  +  G + A+++A  SIA+  I   +    +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAA-SIWLPSILFGVGLL 68

Query: 110 SAVQTVCGQAYGAKKYSAMGLICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQ 169
            A+  V  Q  GA +   +     + ++L L  +V +  + + +  I+R +   + +A +
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 170 GQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVGVFLLHILLTWIVVF----VL 225
              +   +I  + A+ +   ++ F    ++  P   +     LL+I L WI V+      
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 226 DYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKD--TWTGLSIKAFRGIWPYFKLTVASA 283
           + G +G  +   + +W+++++   YIV S        +        + +   F+L    A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 284 VMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELG 343
             L  E+     + L+   L   +  + +  + LN+ +    F + +  A SIRV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 344 AAHPRVAKFSVIVVNATGILISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAIS 403
               + A  +  V   TG+  + +   + ++FR  ++ L+T +  V+     L    AI 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 404 VFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGCILGFKTI-----LGVAGIWW 458
             ++ +Q + +G   G      + +    +Y+++GLP G ILG         LG  G W 
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426

Query: 459 GMIIGVLLQTTTLIILTARTNWNT 482
           G IIG+       ++L  R  W  
Sbjct: 427 GFIIGLSAAA---LMLGQRLYWLQ 447

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.8
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 81.23
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=4.9e-48  Score=390.46  Aligned_cols=428  Identities=21%  Similarity=0.349  Sum_probs=394.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcchHH
Q 046061           50 ESRLLWLLSWASIVVSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSAMG  129 (505)
Q Consensus        50 ~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~  129 (505)
                      ..|++++.++|.+++++...+++.+|+.+++|+|++++|+++++.++..+ ...+..|++++..+.+++++|++|+++.+
T Consensus        10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~~~~~   88 (460)
T 3mkt_A           10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQHKIP   88 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSSTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence            78999999999999999999999999999999999999999999999774 45577899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 046061          130 LICQRAIVLHLGAAVILTFLYWYSSPILRAIGQSDTIAEQGQVFARGLIPQLYAFAISCPMQRFLQAQNIVNPLAYMSVG  209 (505)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~  209 (505)
                      +.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+++|+.||++.++..+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  168 (460)
T 3mkt_A           89 FEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI  168 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            99999999999999987777788888888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-c---CcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhhhCHHHHHHHHHHHH
Q 046061          210 VFLLHILLTWIVVFV-L---DYGLLGAALTLGLSWWLLVIINGLYIVLSPSCKD-T-WTGLSIKAFRGIWPYFKLTVASA  283 (505)
Q Consensus       210 ~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~p~~  283 (505)
                      +.++|+++++++++. +   ++|+.|+++|+.+++.+..++..++++++++.+. + ++++...+++..|+++++++|..
T Consensus       169 ~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~  248 (460)
T 3mkt_A          169 GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA  248 (460)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHH
Confidence            999999999999975 3   6999999999999999999988888876643322 1 12222345688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 046061          284 VMLCLEIWYNQGLVLISGLLTNPTISLDSISICLNYLNWDMQFMLGLSTAASIRVSNELGAAHPRVAKFSVIVVNATGIL  363 (505)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~  363 (505)
                      ++++...+...+++.+++.++  ++++|+|++++++.++..++..+++++..|.+++++|++|.++.++..+++.++...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~  326 (460)
T 3mkt_A          249 AALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLA  326 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999984  789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhHHH
Q 046061          364 ISIVFCAIVLIFRVGLSKLFTSDSEVIEAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLATYYIIGLPIGC  443 (505)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~  443 (505)
                      ++++++++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++|+++
T Consensus       327 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~  406 (460)
T 3mkt_A          327 TACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGY  406 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh----cC-CCchHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 046061          444 ILGFK----TI-LGVAGIWWGMIIGVLLQTTTLIILTARTNW  480 (505)
Q Consensus       444 ~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~  480 (505)
                      ++.+.    ++ +|..|+|+++.+++++..++..+.++|+.+
T Consensus       407 ~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~  448 (460)
T 3mkt_A          407 ILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred             HHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887    67 999999999999999998887776666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00