Citrus Sinensis ID: 046116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRRRKLEKARRKKKEVNFTGGARLTVAHTGTVRD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHccccEEEEHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHccccHHHcccccccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
melhrqrnttscsrmpqkvtctkpycffcsmneqppslrRAKVAQCFkelplsrlrddqEHVLVLSGLFNiaikqpddpefpslgifECMTKLIHKgitdkewllrdqniyiPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLtrglggfelenRKAEEWASQLQCWSLYLLNcfacrerssfdlicsQDFLKIVCGMwgglanhtspaGIGLIRAFLKNVIESVCnvsrssddWQYAAIDSLLLllkdpdtryeVIDIAALFLVDLVELkslngrerVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKAldlcplkmrKERIVLYSNRAQCYLMLkkpeaaisDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSrmkckhtnrvkiPYYAAVMINKQmnatwpfihakskmckpsiiEEKLVEKTCRRRKLEKARRKKKevnftggarltvahtgtvrd
Flexible Loop (DISEMBL)
melhrqrnttscsrmpqkvtCTKPYCFFCSMNEQPPSLRRAKVAQCFKELplsrlrddqEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGhlashdktFEAVALYEVEIIELAKNIACNCFEVVYEKFvglkekkrvkYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTllqdyhkvkygnlklkskkagraldeiwdlkvqkrkkeklmsdeemKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSlsktmsshskslwRRSQAYDMMGLAKESLMDALTFIGsrmkckhtnrVKIPYYAAVMINKQMNATWPFIHakskmckpsiieeklvektcrrrklekarrkkkevnftggarltvahtgtvrd
Low Complexity Region (SEG)
MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAlslsktmsshskslWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCrrrklekarrkkkEVNFTGGARLTVAHTGTVRD
Disordered region (IsUnstruct)
******************VTCTKPYCFFCSMN*****LRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKV********************VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP****************************QAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTC*********************************
Disordered Region (DISOPRED)
******************VTCTKPYCFFCSMNEQPP*LRRAKVAQCFKELPL*****DQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDL*****************QTL********************************************************QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM***********************************************************************************
Disordered Region (DISEMBL)
**************MPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL*************WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRRR***********VNFTGGARLTVAHTGTVRD
Disordered Region (DISPRO)
****************QKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRR*******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDxxxxxxxxxxxxxxxxxxxxxLSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRRRKLEKARRKKKEVNFTGGARLTVAHTGTVRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	604	2.2.26 [Sep-21-2011]
Q99614	292	Tetratricopeptide repeat	yes	no	0.183	0.380	0.377	2e-12
Q3ZBR5	292	Tetratricopeptide repeat	yes	no	0.183	0.380	0.377	2e-11
Q91Z38	292	Tetratricopeptide repeat	yes	no	0.153	0.318	0.375	8e-10
Q6DGE9	934	Protein unc-45 homolog B	no	no	0.140	0.091	0.363	9e-10
Q9HGM9	476	DnaJ homolog subfamily C	yes	no	0.157	0.199	0.386	2e-07
Q75Q39	610	Mitochondrial import rece	no	no	0.152	0.150	0.336	3e-07
Q9CZW5	611	Mitochondrial import rece	no	no	0.152	0.150	0.336	5e-07
O94826	608	Mitochondrial import rece	no	no	0.152	0.151	0.336	5e-07
O14217	625	Probable mitochondrial im	no	no	0.145	0.140	0.371	1e-06
P38825	639	Protein TOM71 OS=Saccharo	yes	no	0.145	0.137	0.354	3e-06

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
           EK MSDEE ++       LK++GN++F  G   EA   YS+AL++CP   +KER +L+SN
Sbjct: 101 EKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSN 160

Query: 459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           RA   +   K E AI+D ++A+ L+    S+ +++ RR++ Y+      E+L D
Sbjct: 161 RAAARMKQDKKEMAINDCSKAIQLN---PSYIRAILRRAELYEKTDKLDEALED 211

Homo sapiens (taxid: 9606)

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
           EK M DEE K        LK++GN++F  G   EA   Y++AL  CP   +K+R VL+SN
Sbjct: 101 EKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSN 160

Query: 459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           RA   +  +K E AISD ++A+ L+    S+ +++ RR++ Y+      E+L D
Sbjct: 161 RAAARMKQEKKEMAISDCSKAIQLN---PSYIRAILRRAELYEKTDKLDEALED 211

Bos taurus (taxid: 9913)

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK++GN+ F  G   EA   YS+AL +CP   +K+R VL+SNRA   +   K E AI+D 
Sbjct: 119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDC 178

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           ++A+ L+ T   + +++ RR++ Y+      E+L D
Sbjct: 179 SKAIQLNPT---YIRAILRRAELYEKTDKLDEALED 211

Mus musculus (taxid: 10090)

>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2

 Score = 65.9 bits (159), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK++GN+ F AG I++A+  Y+KA+  C  + +K   V+Y NR+ C+L  +    A SD 
Sbjct: 12  LKEEGNKHFQAGEIDQAIDCYTKAIKTCKKEDKKALAVIYRNRSACFLKKENYSNAASDA 71

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMG 504
           T+A+ +    ++  K+L+RR QA++ +G
Sbjct: 72  TKAIDVD---AADIKALYRRCQAFEKLG 96

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development. Required for myoseptal integrity, myofiber attachment, motility and craniofacial development.

Danio rerio (taxid: 7955)

>sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 6/101 (5%)

Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV-LYSNRAQCYLMLKKPEAAISDT 476
           K QGN  F  G  ++A +KYS+AL + P    KE +  LY NRA   L LK+PE A+SD+
Sbjct: 227 KNQGNDLFRQGNYQDAYEKYSEALQIDP--DNKETVAKLYMNRATVLLRLKRPEEALSDS 284

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFI 517
             AL++    SS+ K L  R++A++ +   +E++ D  + I
Sbjct: 285 DNALAID---SSYLKGLKVRAKAHEALEKWEEAVRDVQSAI 322

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477
           K +GN+ F AG  E+A++ Y++A+ LCP +   +    Y NRA  +  L+K +    D T
Sbjct: 120 KNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNADLSTFYQNRAAAFEQLQKWKEVAQDCT 179

Query: 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           +A+ L+     + K+L+RR++A++ +   KE L D
Sbjct: 180 KAVELN---PKYVKALFRRAKAHEKLDNKKECLED 211

Receptor that accelerates the import of all mitochondrial precursor proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=2

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477
           K +GN+ F AG  E+A++ Y++A+ LCP +   +    Y NRA  +  L+K +    D T
Sbjct: 121 KNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCT 180

Query: 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           +A+ L+     + K+L+RR++A++ +   KE L D
Sbjct: 181 KAVELN---PKYVKALFRRAKAHEKLDNKKECLED 212

Receptor that accelerates the import of all mitochondrial precursor proteins.

Mus musculus (taxid: 10090)

>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477
           K +GN+ F AG  E+A++ Y++A+ LCP +   +    Y NRA  +  L+K +    D T
Sbjct: 118 KNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCT 177

Query: 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           +A+ L+     + K+L+RR++A++ +   KE L D
Sbjct: 178 KAVELN---PKYVKALFRRAKAHEKLDNKKECLED 209

Receptor that accelerates the import of all mitochondrial precursor proteins.

Homo sapiens (taxid: 9606)

>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom70 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom70 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 9/97 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK  GN+ +       A+  Y++A+  C         + +SNRA CY  +   E  I DT
Sbjct: 154 LKTLGNKAYGQKEYANAIDYYTQAI-TCS-----HDPIFFSNRAACYAAIGDFEQVIKDT 207

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDA 513
           + ALSL    SS+ K+L RRS AY+ +G   E+LMD+
Sbjct: 208 SEALSLD---SSYVKALNRRSAAYEQLGKLDEALMDS 241

Receptor that accelerates the import of all mitochondrial precursor proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38825|TOM71_YEAST Protein TOM71 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM71 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK +GN  F A    EA+K Y  A++L P        V YSN + CY+     E  I  T
Sbjct: 130 LKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFT 184

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           T+AL +      HSK+L RR+ A + +G   +++ D
Sbjct: 185 TKALEIK---PDHSKALLRRASANESLGNFTDAMFD 217

Involved in MBF1-mediated mitochondrial morphogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
225438918	636	PREDICTED: uncharacterized protein LOC10	0.907	0.861	0.686	0.0
255567973	632	heat shock protein 70 (HSP70)-interactin	0.945	0.903	0.632	0.0
224074227	607	predicted protein [Populus trichocarpa]	0.938	0.934	0.657	0.0
225458780	645	PREDICTED: uncharacterized protein LOC10	0.892	0.835	0.638	0.0
147838438	1000	hypothetical protein VITISV_028488 [Viti	0.892	0.539	0.638	0.0
356540650	606	PREDICTED: uncharacterized protein LOC10	0.899	0.896	0.643	0.0
296087357	565	unnamed protein product [Vitis vinifera]	0.807	0.863	0.621	0.0
302142229	622	unnamed protein product [Vitis vinifera]	0.854	0.829	0.606	0.0
255538118	574	heat shock protein 70 (HSP70)-interactin	0.867	0.912	0.644	0.0
449448474	587	PREDICTED: uncharacterized protein LOC10	0.869	0.894	0.604	0.0

>gi|225438918|ref|XP_002279273.1| PREDICTED: uncharacterized protein LOC100242317 [Vitis vinifera]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/567 (68%), Positives = 461/567 (81%), Gaps = 19/567 (3%)

Query: 1   MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQE 60
           ME   Q+NTT       KV CT P CFFC+MNE  PSLRRA +A+CFKE+PL   RDDQE
Sbjct: 1   MESQHQKNTT---HKNVKVLCTNPCCFFCAMNEADPSLRRAGIAKCFKEMPL---RDDQE 54

Query: 61  HVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHII 120
           HVL LSGL+NIA+ QPDDPEFP LGIFEC   LI +GI+DKEWLLRDQNIYIPYYAAHII
Sbjct: 55  HVLALSGLWNIAMTQPDDPEFPLLGIFECAANLIRRGISDKEWLLRDQNIYIPYYAAHII 114

Query: 121 GSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYE 180
           GSYTMNK  FAE+AVKSGV+  LMELLRGK+SWVE+RVAVRALGHLASH++TFEA+A++E
Sbjct: 115 GSYTMNKVQFAERAVKSGVISSLMELLRGKMSWVEKRVAVRALGHLASHERTFEAIAVHE 174

Query: 181 VEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQ 240
            EII  +   A  C + VY +FVG++  +R+KYHCDLLTRG GG E+ENRKAEEWASQLQ
Sbjct: 175 AEIIHESMETASTCLDEVYVEFVGVEHTRRLKYHCDLLTRGTGGLEIENRKAEEWASQLQ 234

Query: 241 CWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR---------- 290
           CWSLYLLNCFAC+ERS  + IC+++FLK +CGMWGGLAN +SPAGIGLIR          
Sbjct: 235 CWSLYLLNCFACKERS-LNRICNKEFLKKLCGMWGGLANGSSPAGIGLIRNLCYTKTGRR 293

Query: 291 --AFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSL 348
             A  K VIES+CN SRSSD+WQY AID LLL+LKDPDTRY+V++ A LFLVDLVEL+SL
Sbjct: 294 SVADSKEVIESLCNTSRSSDEWQYMAIDCLLLILKDPDTRYKVLNTAVLFLVDLVELRSL 353

Query: 349 NGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMK 408
            GR +VGEAITQTLLQDY+++KYGNL LKSK+A R L+EIWDLKV+++K+E +M++EE +
Sbjct: 354 RGRTKVGEAITQTLLQDYNQLKYGNLDLKSKRAERTLEEIWDLKVERKKRENIMTEEEAR 413

Query: 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK 468
           E  L   ++KQ+GNQ FW+G IE AV KY++AL+LCPLKMRKER+VL+SNRAQC+L+L+ 
Sbjct: 414 ERRLLAGVMKQEGNQLFWSGDIEAAVLKYTEALELCPLKMRKERVVLHSNRAQCHLLLRD 473

Query: 469 PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNR 528
            E+AISD+TRAL+LS  +S HSKSLWRRSQAYDM GLAKESLMD L FI  R+K   TN 
Sbjct: 474 TESAISDSTRALNLSSVLSPHSKSLWRRSQAYDMKGLAKESLMDCLMFINDRIKSLDTNG 533

Query: 529 VKIPYYAAVMINKQMNATWPFIHAKSK 555
           VKIPYYAA MI KQMN TW F  A+SK
Sbjct: 534 VKIPYYAARMITKQMNTTWIFATARSK 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567973|ref|XP_002524964.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223535799|gb|EEF37461.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/613 (63%), Positives = 466/613 (76%), Gaps = 42/613 (6%)

Query: 1   MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQE 60
           MEL    N+  CS      TCT P+CFFC+MNE  PSLRRAK+AQ F+E+PL   +D QE
Sbjct: 1   MELEHLENSLRCSSKMLNPTCTNPFCFFCTMNEPDPSLRRAKIAQSFQEMPL---KDGQE 57

Query: 61  HVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHII 120
           HVLVLSG++NIA+ QPDDPEFPSLGIFECM KLI +GI D+EWLL+DQNIYIPYYAAHII
Sbjct: 58  HVLVLSGIWNIAMTQPDDPEFPSLGIFECMGKLIDRGIKDREWLLKDQNIYIPYYAAHII 117

Query: 121 GSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYE 180
           GSYTMNKA FA+KAV SGVVLPLMELLRGKI+WVE+RVA+RALGH+ASH++TF A+  +E
Sbjct: 118 GSYTMNKAEFADKAVNSGVVLPLMELLRGKITWVEQRVAIRALGHIASHERTFGAIIEHE 177

Query: 181 VEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQ 240
            E+IELA  +ACNC + VY++F+G+K  KRVKYHCDLLTRGLGG E EN+KAEEWA QL+
Sbjct: 178 AEMIELAMELACNCLKTVYKRFLGVKYSKRVKYHCDLLTRGLGGKERENKKAEEWAIQLR 237

Query: 241 CWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR---------- 290
           CWSL+LLNCFA +ER   DLIC + FL+ +C MWGGL   TSP G G++R          
Sbjct: 238 CWSLHLLNCFAYKERC-LDLICKKQFLRDLCEMWGGLGKKTSPGGFGVLRTLCNSKTGRV 296

Query: 291 --AFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSL 348
             A L+ VI S+CN SRSS D Q+ AIDSLL LLKD DTR++VI+IAALFL DLVE  SL
Sbjct: 297 SIANLEEVIVSLCNTSRSSHDCQHMAIDSLLSLLKDSDTRHKVIEIAALFLADLVEHNSL 356

Query: 349 NGRERV-GEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEM 407
           N R++V GEAITQ LLQDYHK+KYG +KLKSK+   AL EIW+LKV++RK+E+++S++E+
Sbjct: 357 NERKKVIGEAITQALLQDYHKIKYGFIKLKSKRTEDALKEIWELKVERRKREEIVSEQEL 416

Query: 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK 467
           KE      +LKQ+GN++FW+GYIE+AV KY+KALDLCPL+MRKERIVLYSNRAQ YL+L+
Sbjct: 417 KEKTHLARLLKQEGNKKFWSGYIEKAVMKYTKALDLCPLRMRKERIVLYSNRAQGYLLLR 476

Query: 468 KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTN 527
            P++AISDTTRAL LS   S HS+SLWRRSQAYDM G+AKESLMD L FI  R K K + 
Sbjct: 477 NPDSAISDTTRALCLSSAGSPHSRSLWRRSQAYDMKGMAKESLMDCLMFINGRKKSKQSK 536

Query: 528 RVK-IPYYAAVMINKQMNATWPFIHAKSK------------------------MCKPSII 562
            VK IP YAA MINKQ+NATW F  AKSK                           P+I+
Sbjct: 537 NVKMIPSYAARMINKQVNATWLFADAKSKNKVEEKVDKSNGGEDAMMMDMKEKKGMPTIL 596

Query: 563 EEKLVEKTCRRRK 575
           EE L E+   R K
Sbjct: 597 EESLAEREWSRSK 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074227|ref|XP_002304309.1| predicted protein [Populus trichocarpa] gi|222841741|gb|EEE79288.1| predicted protein [Populus trichocarpa]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/592 (65%), Positives = 461/592 (77%), Gaps = 25/592 (4%)

Query: 31  MNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECM 90
           MNEQ PSLR+AK+A+CFKE+PL   RDDQEHVLVL G++NIA+ QPDDPEFPSLG+F+CM
Sbjct: 1   MNEQDPSLRKAKLARCFKEMPL---RDDQEHVLVLRGIWNIAMTQPDDPEFPSLGVFDCM 57

Query: 91  TKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGK 150
            KLI + + DKEWLLRDQNIYIPYYAAHIIGSYTMNK  FAEKAVKS VVLPL+ELLRGK
Sbjct: 58  GKLIQRAVNDKEWLLRDQNIYIPYYAAHIIGSYTMNKVQFAEKAVKSNVVLPLIELLRGK 117

Query: 151 ISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKEKKR 210
           ISWVE+RVAVR+LGHLASH +TFEA+A +EVEII+LA  IACNC + VY +F+G+K+ KR
Sbjct: 118 ISWVEQRVAVRSLGHLASHARTFEAIAEHEVEIIKLAMEIACNCIKTVYRRFIGVKDSKR 177

Query: 211 VKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIV 270
           VKYH DLLT GLG  E+ENRKAEEWASQLQCWSL+LLNCFAC+ RS  +LIC++ FLK +
Sbjct: 178 VKYHSDLLTTGLGDLEIENRKAEEWASQLQCWSLHLLNCFACKGRS-LNLICNKHFLKEL 236

Query: 271 CGMWGGLANHTSPAGIGLIRAFL------------KNVIESVCNVSRSSDDWQYAAIDSL 318
            GMWGGLAN  SP GIG IR               K VIE +CN+SRSSDDWQ  AID L
Sbjct: 237 GGMWGGLANCASPGGIGCIRTLCNFKTGRESLANSKEVIEILCNISRSSDDWQCMAIDCL 296

Query: 319 LLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKS 378
           LLLLKD DTRY VI+ AAL L DLVEL+SLN R++VGEAITQ LLQDYHK+KYG+LKL S
Sbjct: 297 LLLLKDTDTRYIVINTAALSLADLVELRSLNERKKVGEAITQALLQDYHKIKYGDLKLSS 356

Query: 379 KKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYS 438
           + A RAL E WDL V++RK+E+LMS+EE+KE +  V MLKQ+GN++FW+G+IE+AV +Y+
Sbjct: 357 QDAERALKETWDLMVERRKREELMSEEELKERKNLVGMLKQEGNKKFWSGHIEKAVTRYT 416

Query: 439 KALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498
           KALDLCP KMRKERIVLYSNRAQ YL+L  PEA ISDTTRAL LS T + H KSLWRR+Q
Sbjct: 417 KALDLCPSKMRKERIVLYSNRAQGYLLLNNPEAVISDTTRALCLSTTANPHRKSLWRRAQ 476

Query: 499 AYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIH-AKSK-- 555
           AYDM GLAKESLMD L FI  RMK + T   KIPY+A  MI+KQMNATW F   AKSK  
Sbjct: 477 AYDMKGLAKESLMDCLMFIHGRMKAEKTKNAKIPYFATRMIHKQMNATWLFATVAKSKDK 536

Query: 556 ----MCKPSIIEEKLVEKTCRRRKLEKARRKKKEVNFTGGARLTVAHTGTVR 603
               + KP ++E    E  C+  ++++      + +F  G R + +  G  R
Sbjct: 537 YEAEVEKPKVLEHG--EDQCQVTEIKERNDSVPDGSFMEGERRSRSKQGRPR 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458780|ref|XP_002283265.1| PREDICTED: uncharacterized protein LOC100267728 [Vitis vinifera]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/562 (63%), Positives = 446/562 (79%), Gaps = 23/562 (4%)

Query: 19  VTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDD 78
           + CT P CFFC M E   S+RR  +  CFKE+PL+   DDQEHVLVLSGLFNIA+ QPDD
Sbjct: 27  MACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLT---DDQEHVLVLSGLFNIAMTQPDD 83

Query: 79  PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG 138
           PEFPSLGIF CM  LI + ITDK+WLLR QN+YIPYYAAH+IGSYTMNK  FAEKAV+SG
Sbjct: 84  PEFPSLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESG 143

Query: 139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVV 198
           V+ PLMELLRGK++WVE+RVAVRALGHLAS+++TFEAVA YE E++ELA  +A  C EVV
Sbjct: 144 VIPPLMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVV 203

Query: 199 YEKFVGLK-EKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSS 257
           Y +FVG+  EK R+KYH DLLTRG+GG E+ENRKAEEWASQLQCWSLYLLNCFA +ER +
Sbjct: 204 YAEFVGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKER-A 262

Query: 258 FDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR------------AFLKNVIESVCNVSR 305
            +LIC Q+FLK +C MWGGL NHTSPAG+GLIR            A  + V+ES+CN+SR
Sbjct: 263 INLICRQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSR 322

Query: 306 SSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQD 365
           SSDDWQY  +D LLLLL+D DTRY+V++IA LFLVDLVEL+SL GR  VGEAIT+TLL D
Sbjct: 323 SSDDWQYVGVDCLLLLLRDQDTRYKVMEIAILFLVDLVELRSLGGRSYVGEAITRTLLLD 382

Query: 366 YHKVKYGNLKLKSKK-AGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQE 424
           Y++ +    KLK+ K   RAL+EIW LK++++++E++MS+E+++E ++ + ++KQQGNQ 
Sbjct: 383 YNQTRS---KLKNNKVVQRALEEIWVLKLERKRRERMMSNEKVEERKVLISLIKQQGNQR 439

Query: 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484
            W G +EEA+ KYS+AL+LCP +MRKER+VLYSNRAQC+L+L  P+A I D TRALSLS 
Sbjct: 440 CWLGEVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSI 499

Query: 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544
             +SH KSLWRRSQAYDM GLAKESLMD + FI   +  + T RVK+PY+AA MI+KQM 
Sbjct: 500 PPNSHGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETTKRVKVPYFAARMISKQME 559

Query: 545 ATWPFIHAKSKM--CKPSIIEE 564
           ATW F  A+SK+   +P+ ++E
Sbjct: 560 ATWLFSTARSKLSSTQPNKVQE 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838438|emb|CAN63254.1| hypothetical protein VITISV_028488 [Vitis vinifera]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/562 (63%), Positives = 446/562 (79%), Gaps = 23/562 (4%)

Query: 19  VTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDD 78
           + CT P CFFC M E   S+RR  +  CFKE+PL+   DDQEHVLVLSGLFNIA+ QPDD
Sbjct: 3   MACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLT---DDQEHVLVLSGLFNIAMTQPDD 59

Query: 79  PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG 138
           PEFPSLGIF CM  LI + ITDK+WLLR QN+YIPYYAAH+IGSYTMNK  FAEKAV+SG
Sbjct: 60  PEFPSLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESG 119

Query: 139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVV 198
           V+ PLMELLRGK++WVE+RVAVRALGHLAS+++TFEAVA YE E++ELA  +A  C EVV
Sbjct: 120 VIPPLMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVV 179

Query: 199 YEKFVGLK-EKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSS 257
           Y +FVG+  EK R+KYH DLLTRG+GG E+ENRKAEEWASQLQCWSLYLLNCFA +ER +
Sbjct: 180 YAEFVGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKER-A 238

Query: 258 FDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR------------AFLKNVIESVCNVSR 305
            +LIC Q+FLK +C MWGGL NHTSPAG+GLIR            A  + V+ES+CN+SR
Sbjct: 239 INLICRQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSR 298

Query: 306 SSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQD 365
           SSDDWQY  +D LLLLL+D DTRY+V++IA LFLVDLVEL+SL GR  VGEAIT+TLL D
Sbjct: 299 SSDDWQYVGVDCLLLLLRDQDTRYKVMEIAILFLVDLVELRSLGGRSYVGEAITRTLLLD 358

Query: 366 YHKVKYGNLKLKSKK-AGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQE 424
           Y++ +    KLK+ K   RAL+EIW LK++++++E++MS+E+++E ++ + ++KQQGNQ 
Sbjct: 359 YNQTRS---KLKNNKVVQRALEEIWVLKLERKRRERMMSNEKVEERKVLISLIKQQGNQR 415

Query: 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484
            W G +EEA+ KYS+AL+LCP +MRKER+VLYSNRAQC+L+L  P+A I D TRALSLS 
Sbjct: 416 CWLGEVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSI 475

Query: 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544
             +SH KSLWRRSQAYDM GLAKESLMD + FI   +  + T RVK+PY+AA MI+KQM 
Sbjct: 476 PPNSHGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETTKRVKVPYFAARMISKQME 535

Query: 545 ATWPFIHAKSKM--CKPSIIEE 564
           ATW F  A+SK+   +P+ ++E
Sbjct: 536 ATWLFSTARSKLSSTQPNKVQE 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540650|ref|XP_003538799.1| PREDICTED: uncharacterized protein LOC100803448 [Glycine max]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/566 (64%), Positives = 436/566 (77%), Gaps = 23/566 (4%)

Query: 8   NTTSCSRMPQKVTCTKPYC--FFCS-MNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLV 64
           NT +    P   T T  YC  FFC  M+E  P LRRAK+A+ FK++PL+   DDQEH+L 
Sbjct: 12  NTKTHKSTPPIPTYTNNYCSCFFCIIMSETVPPLRRAKIARYFKQMPLT---DDQEHILA 68

Query: 65  LSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYT 124
           LSGL+ IAI  P+DPEFPSLGIF CM KLI KG+  K+WLLR QN+YIPYYAAHIIGSYT
Sbjct: 69  LSGLWKIAITNPNDPEFPSLGIFRCMAKLIQKGVNHKDWLLRGQNMYIPYYAAHIIGSYT 128

Query: 125 MNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEII 184
           MNKA FA+KAVK  VV PLMELLRGKISWVE+RVA+RALGHLASH+ TFEAV+ +E E++
Sbjct: 129 MNKAKFADKAVKFNVVPPLMELLRGKISWVEQRVALRALGHLASHEATFEAVSEHEAEVV 188

Query: 185 ELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSL 244
           E A  IA  C + V+EKFV LKE +R++YH +LLTRG    ELENRKAEEWASQLQCWSL
Sbjct: 189 EAAIKIASTCLKEVFEKFVVLKESERLEYHRNLLTRGHADLELENRKAEEWASQLQCWSL 248

Query: 245 YLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR------------AF 292
           YLL+CFACRER S  LIC + FLK +CGMWGGLAN TSP+GIGL+             A 
Sbjct: 249 YLLDCFACRER-SMGLICKKKFLKDLCGMWGGLANPTSPSGIGLLSTLCGTQIGRESVAD 307

Query: 293 LKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRE 352
           L+ V+ ++CNVSRSSDD Q+ AIDSLL LL+DP TRY+VID     L DLVEL+SL G+ 
Sbjct: 308 LEEVVVNLCNVSRSSDDRQHMAIDSLLQLLRDPVTRYKVIDTTVPVLADLVELRSLGGKP 367

Query: 353 RVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENEL 412
            VG+ I QTLLQDYHKVK+G LKLKS+K  RAL+E+WDLKV++ KK+ LMS++E++E E+
Sbjct: 368 NVGQEIMQTLLQDYHKVKFGELKLKSEKTKRALEELWDLKVERVKKQSLMSEQEIREKEV 427

Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAA 472
              +LKQ+GN+EF +  IE+AV KY++ALDLCPLK +KERIVL+SNRAQC+L+L+ PEAA
Sbjct: 428 LAGILKQEGNREFGSREIEKAVVKYTEALDLCPLKSKKERIVLHSNRAQCHLLLRDPEAA 487

Query: 473 ISDTTRALSLS---KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNR- 528
           +SDTTRAL LS   +T   HSKSLWRRSQAYDM GLAKESLMD L FI +R       + 
Sbjct: 488 LSDTTRALCLSSVARTACLHSKSLWRRSQAYDMKGLAKESLMDCLMFISNRFGSSTQRKG 547

Query: 529 VKIPYYAAVMINKQMNATWPFIHAKS 554
            KIP+YAA M+NKQMNATW F  AKS
Sbjct: 548 FKIPHYAARMVNKQMNATWLFASAKS 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087357|emb|CBI33731.3| unnamed protein product [Vitis vinifera]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/555 (62%), Positives = 408/555 (73%), Gaps = 67/555 (12%)

Query: 1   MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQE 60
           ME   Q+NTT       KV CT P CFFC+MNE  PSLRRA +A+CFKE+PL   RDDQE
Sbjct: 18  MESQHQKNTT---HKNVKVLCTNPCCFFCAMNEADPSLRRAGIAKCFKEMPL---RDDQE 71

Query: 61  HVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHII 120
           HVL LSGL+NIA+ QPDDPEFP LGIFEC   LI +GI+DKEWLLRDQNIYIPYYAAHII
Sbjct: 72  HVLALSGLWNIAMTQPDDPEFPLLGIFECAANLIRRGISDKEWLLRDQNIYIPYYAAHII 131

Query: 121 GSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYE 180
           GSYTMNK  FAE+AVKSGV+  LMELLRGK+SWVE+RVAVRALGHLASH++TFEA+A++E
Sbjct: 132 GSYTMNKVQFAERAVKSGVISSLMELLRGKMSWVEKRVAVRALGHLASHERTFEAIAVHE 191

Query: 181 VEIIELAKNIACNCFEVVYEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQ 240
            EII  +   A  C + VY +FVG++  +R+KYHCDLLTRG GG E+ENRKAEEWASQLQ
Sbjct: 192 AEIIHESMETASTCLDEVYVEFVGVEHTRRLKYHCDLLTRGTGGLEIENRKAEEWASQLQ 251

Query: 241 CWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKNVIESV 300
           CWSLYLLNCFAC+ERS                               L R + K VIES+
Sbjct: 252 CWSLYLLNCFACKERS-------------------------------LNRIYSKEVIESL 280

Query: 301 CNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQ 360
           CN SRSSD+WQY AID LLL+LKDPDTRY                              +
Sbjct: 281 CNTSRSSDEWQYMAIDCLLLILKDPDTRY------------------------------K 310

Query: 361 TLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQ 420
           TLLQDY+++KYGNL LKSK+A R L+EIWDLKV+++K+E +M++EE +E  L   ++KQ+
Sbjct: 311 TLLQDYNQLKYGNLDLKSKRAERTLEEIWDLKVERKKRENIMTEEEARERRLLAGVMKQE 370

Query: 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480
           GNQ FW+G IE AV KY++AL+LCPLKMRKER+VL+SNRAQC+L+L+  E+AISD+TRAL
Sbjct: 371 GNQLFWSGDIEAAVLKYTEALELCPLKMRKERVVLHSNRAQCHLLLRDTESAISDSTRAL 430

Query: 481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540
           +LS  +S HSKSLWRRSQAYDM GLAKESLMD L FI  R+K   TN VKIPYYAA MI 
Sbjct: 431 NLSSVLSPHSKSLWRRSQAYDMKGLAKESLMDCLMFINDRIKSLDTNGVKIPYYAARMIT 490

Query: 541 KQMNATWPFIHAKSK 555
           KQMN TW F  A+SK
Sbjct: 491 KQMNTTWIFATARSK 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142229|emb|CBI19432.3| unnamed protein product [Vitis vinifera]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/562 (60%), Positives = 426/562 (75%), Gaps = 46/562 (8%)

Query: 19  VTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDD 78
           + CT P CFFC M E   S+RR  +  CFKE+PL+   DDQEHVLVLSGLFNIA+ QPDD
Sbjct: 27  MACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLT---DDQEHVLVLSGLFNIAMTQPDD 83

Query: 79  PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG 138
           PEFPSLGIF CM  LI + ITDK+WLLR QN+YIPYYAAH+IGSYTMNK  FAEKAV+SG
Sbjct: 84  PEFPSLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESG 143

Query: 139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVV 198
           V+ PLMELLRGK++WVE+RVAVRALGHLAS+++TFEAVA YE E++ELA  +A  C EVV
Sbjct: 144 VIPPLMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVV 203

Query: 199 YEKFVGLK-EKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSS 257
           Y +FVG+  EK R+KYH DLLTRG+GG E+ENRKAEEWASQLQCWSLYLLNCFA +ER +
Sbjct: 204 YAEFVGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKER-A 262

Query: 258 FDLICSQDFLKIVCGMWGGLANHTSPAGIGLIR------------AFLKNVIESVCNVSR 305
            +LIC Q+FLK +C MWGGL NHTSPAG+GLIR            A  + V+ES+CN+SR
Sbjct: 263 INLICRQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSR 322

Query: 306 SSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQD 365
           SSDDWQY  +D LLLLL+D DTRY+V++IA L                       TLL D
Sbjct: 323 SSDDWQYVGVDCLLLLLRDQDTRYKVMEIAIL-----------------------TLLLD 359

Query: 366 YHKVKYGNLKLKSKK-AGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQE 424
           Y++ +    KLK+ K   RAL+EIW LK++++++E++MS+E+++E ++ + ++KQQGNQ 
Sbjct: 360 YNQTRS---KLKNNKVVQRALEEIWVLKLERKRRERMMSNEKVEERKVLISLIKQQGNQR 416

Query: 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484
            W G +EEA+ KYS+AL+LCP +MRKER+VLYSNRAQC+L+L  P+A I D TRALSLS 
Sbjct: 417 CWLGEVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSI 476

Query: 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544
             +SH KSLWRRSQAYDM GLAKESLMD + FI   +  + T RVK+PY+AA MI+KQM 
Sbjct: 477 PPNSHGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETTKRVKVPYFAARMISKQME 536

Query: 545 ATWPFIHAKSKM--CKPSIIEE 564
           ATW F  A+SK+   +P+ ++E
Sbjct: 537 ATWLFSTARSKLSSTQPNKVQE 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538118|ref|XP_002510124.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223550825|gb|EEF52311.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/545 (64%), Positives = 426/545 (78%), Gaps = 21/545 (3%)

Query: 31  MNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECM 90
           M EQ  SLRRA +A CFKE+PL    D QEHVLVLSGL+NIA+ QPDDPEFPSLG+F CM
Sbjct: 1   MKEQDLSLRRAGIASCFKEMPLE---DSQEHVLVLSGLWNIAMTQPDDPEFPSLGVFNCM 57

Query: 91  TKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGK 150
             LI KG  D+ WLL DQNIYIPYYAAH+IGSYTMNKA FAEKAV+SGV+ PLMELLRGK
Sbjct: 58  ASLIRKGTNDRSWLLTDQNIYIPYYAAHVIGSYTMNKAEFAEKAVESGVIPPLMELLRGK 117

Query: 151 ISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYEKFVGLKE-KK 209
           ISWVE+RVAVRALGHLAS+++TF AVA YE E+++L   +A  C   VY  FVG+K+ KK
Sbjct: 118 ISWVEQRVAVRALGHLASYERTFPAVAEYEQELVKLTTELASTCLAAVYANFVGVKDVKK 177

Query: 210 RVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKI 269
           R+KYH DLLTRG+GG + EN KAEEWASQLQCWSLYLLNCFAC+ER S +LIC QDFLK 
Sbjct: 178 RLKYHSDLLTRGVGGIDTENTKAEEWASQLQCWSLYLLNCFACKER-SLELICRQDFLKD 236

Query: 270 VCGMWGGLANHTSPAGIGLIRAF------------LKNVIESVCNVSRSSDDWQYAAIDS 317
           +CGMWGGL NH+SPAGIGLIR               + VI+ +CN+SRSSDDWQY  ID 
Sbjct: 237 LCGMWGGLVNHSSPAGIGLIRILCYSINGRKRVSECEEVIKRLCNLSRSSDDWQYMGIDC 296

Query: 318 LLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLK 377
           LLLLLKD DTR+EVI+IA LFLVDLVEL++L  R  VGE IT+ LL DY + K    K K
Sbjct: 297 LLLLLKDQDTRHEVIEIATLFLVDLVELRNLGDRLNVGETITKALLLDYKQSKL---KKK 353

Query: 378 SKKAGRALDEIWDLKVQKRKKEKLM-SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKK 436
           +KK G+ L EIWDLKV+++++EKLM S E+++E  + V ++KQQ N+ FW G IEEA+ K
Sbjct: 354 NKKVGKVLQEIWDLKVERQRREKLMLSKEKVEERRVMVGLIKQQANRFFWLGDIEEALAK 413

Query: 437 YSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496
           YS+ALD+CPL++RKER+V++SN+A C+L+L  P+AAIS++TRALSLS   +SHSKSLWRR
Sbjct: 414 YSEALDMCPLRLRKERMVIHSNKAHCHLLLGDPDAAISESTRALSLSSPANSHSKSLWRR 473

Query: 497 SQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKM 556
           SQAYDM GLAKESLMD + F+ S +  +   R+KIP+ AA MI+KQM+ATW F  AKSK 
Sbjct: 474 SQAYDMKGLAKESLMDCIMFLNSCINTETRKRMKIPHCAARMISKQMDATWLFAGAKSKA 533

Query: 557 CKPSI 561
            +  +
Sbjct: 534 VRGQV 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448474|ref|XP_004141991.1| PREDICTED: uncharacterized protein LOC101214245 [Cucumis sativus]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/549 (60%), Positives = 420/549 (76%), Gaps = 24/549 (4%)

Query: 19  VTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDD 78
           + C  P+CFFC+MNE  P LR  K+ +CFKE+PL   RDD E VL LSGL+NIA+ +PD+
Sbjct: 14  LNCALPFCFFCTMNEPDPFLRTFKITECFKEIPL---RDDPESVLALSGLWNIAMTRPDN 70

Query: 79  PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG 138
           PEFP LGIFECM KLI +GI+D++WL RDQN+YIPYYAAHIIGSY MN+A FAE AV+SG
Sbjct: 71  PEFPELGIFECMAKLISRGISDRKWLFRDQNVYIPYYAAHIIGSYAMNRAEFAEIAVESG 130

Query: 139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVV 198
           V+ PLMELLRGKISWVE+RVA+RALGHLASH++TFE+VA    E +ELA  IA N  E V
Sbjct: 131 VIPPLMELLRGKISWVEQRVAIRALGHLASHERTFESVAQIGGETVELAMEIASNFVENV 190

Query: 199 YEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSF 258
           Y +F  LK  KR+KY  +LLTRGLGG E+ENRKAEEWA Q QCWSLYL+N FA R+    
Sbjct: 191 YTQFFCLK--KRLKYQRNLLTRGLGGVEIENRKAEEWAIQTQCWSLYLINSFA-RKEKHL 247

Query: 259 DLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKN------------VIESVCNVSRS 306
           + IC  +FLK +CG+WGGL N  +P GIGL+R   K             V++S+C ++R+
Sbjct: 248 NFICKTNFLKNLCGIWGGLINPEAPGGIGLLRTLCKTETGRKAVADVEEVLKSLCVLART 307

Query: 307 SDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGR--ERVGEAITQTLLQ 364
           SD+WQ  AI+ LL L+KDP+TRY V++ +   LVDLVEL++   R  +++G+ +T+ LLQ
Sbjct: 308 SDEWQIMAIECLLNLIKDPETRYRVLETSVFSLVDLVELETGIDRKKQKLGDILTRALLQ 367

Query: 365 DYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQE 424
           DYHK+KYGN KL S++A RAL E+WDLKV+K++KEKLMS++EMK+ +L V +LK+QGN +
Sbjct: 368 DYHKIKYGNQKLYSERATRALGELWDLKVEKKRKEKLMSEKEMKKRKLLVGILKKQGNHK 427

Query: 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484
           F  G IE+A  KY++AL++   KMRK+R+VL+SNRAQC+L+++ PEAAISDTTRAL LSK
Sbjct: 428 FRIGEIEKAAMKYTEALNISLPKMRKQRLVLHSNRAQCFLLVRDPEAAISDTTRALCLSK 487

Query: 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544
             S H +SLWRRSQAYDMM L+KESLMD L F+  R+K KH    KIP+YAA MINKQMN
Sbjct: 488 QGSPHMRSLWRRSQAYDMMRLSKESLMDCLVFVSCRIKLKH----KIPFYAARMINKQMN 543

Query: 545 ATWPFIHAK 553
           ATW F   K
Sbjct: 544 ATWVFGSVK 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
TAIR|locus:2167796	588	AT5G43120 [Arabidopsis thalian	0.917	0.942	0.512	5.4e-150
TAIR|locus:2083068	501	AT3G50030 [Arabidopsis thalian	0.483	0.582	0.588	1.4e-142
TAIR|locus:2184073	631	AT5G10200 [Arabidopsis thalian	0.854	0.817	0.489	3.9e-131
UNIPROTKB|Q99614	292	TTC1 "Tetratricopeptide repeat	0.183	0.380	0.359	5.9e-10
UNIPROTKB|Q3ZBR5	292	TTC1 "Tetratricopeptide repeat	0.183	0.380	0.359	3.9e-09
UNIPROTKB|F1RR38	292	TTC1 "Uncharacterized protein"	0.183	0.380	0.350	5e-09
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.210	0.434	0.325	8.6e-09
RGD|1359604	292	Ttc1 "tetratricopeptide repeat	0.210	0.434	0.318	1.1e-08
UNIPROTKB|E1BWM0	296	TTC1 "Uncharacterized protein"	0.134	0.273	0.407	2e-08
ZFIN|ZDB-GENE-041114-80	330	ttc1 "tetratricopeptide repeat	0.197	0.360	0.327	3.6e-08

TAIR|locus:2167796 AT5G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
 Identities = 298/581 (51%), Positives = 401/581 (69%)

Query:     1 MELHRQRNTTSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQE 60
             M+    RNT    R    V  ++P CF C+M E+ P +R+A +    +++ +  +RDD E
Sbjct:     1 MDHFSYRNTNKMVRT-HVVVGSRPCCFSCAMEEKDPCVRKAWLELSLRDMHM--IRDDTE 57

Query:    61 HVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHII 120
               L LS ++  A+  P++PE PSLG+FECMT+L+ KG+ D EW++  QN+Y+PYYAAHII
Sbjct:    58 LALTLSFIWRYAMADPENPELPSLGVFECMTRLMKKGLEDVEWVMTGQNVYVPYYAAHII 117

Query:   121 GSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYE 180
             GSYTM K  FA KAV+SGV+ PL+EL+R K+SWVE+RV VRALGHLAS++ TFEAVA YE
Sbjct:   118 GSYTMKKPDFATKAVESGVIAPLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVAAYE 177

Query:   181 VEIIELAKNIACNCFEVVYEKFVGLKEKK-RVKYHCDLLTRGLGGFELENRKAEEWASQL 239
              E++ LA  IA  C +VVYE+FV ++EK+ RV+YH DLLTRGLGG E+E+RKAEEWASQL
Sbjct:   178 DEVVRLAMEIAMTCVDVVYEEFVSVQEKEGRVRYHSDLLTRGLGGLEMEDRKAEEWASQL 237

Query:   240 QCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFL------ 293
             QCWSL+LLNCFA +++    LIC++ FLK +  MWGGL NHTSP+GIGLIR         
Sbjct:   238 QCWSLHLLNCFAYKQKC-ISLICNKTFLKELSQMWGGLVNHTSPSGIGLIRILCYSKQGR 296

Query:   294 ------KNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKS 347
                   + +I S+CN+SRSSDDWQY  ID LLLLLKD  TRY V++++  +LVDLVE+K+
Sbjct:   297 RHVSGSREMILSLCNLSRSSDDWQYMGIDCLLLLLKDQATRYNVLEMSLFYLVDLVEVKA 356

Query:   348 LNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKE-KLMSDEE 406
             LN R+ +G+ IT+ LL  Y K K G     S KA +AL E+W  KV++R++E K MS  +
Sbjct:   357 LNVRKNLGDRITKVLLMHYCKTKKGCAY--SHKAQKALKELWRNKVERRRRERKFMSKNQ 414

Query:   407 --MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYL 464
               ++E  + V+++KQQ NQ    G IE A+K Y++A+ LCPLK+R++R+ LYS R +CYL
Sbjct:   415 DFLRETSVVVYLIKQQANQLLHVGDIEGAIKCYTEAIGLCPLKLRRKRMNLYSERGECYL 474

Query:   465 MLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524
             +L   +AAISD TRA              W RS+AYD+ GL++ESLMD + F+  R  C 
Sbjct:   475 LLGDVDAAISDCTRALCLSEPVNSHGKSLWTRSRAYDIKGLSRESLMDCIMFVNGR--CF 532

Query:   525 HTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEK 565
               N   IPYYAA MI+KQM ATW F  A++      +++EK
Sbjct:   533 RGN---IPYYAAQMISKQMEATWLFEKARASKLGRMMLKEK 570

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083068 AT3G50030 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 1.4e-142, Sum P(2) = 1.4e-142
 Identities = 183/311 (58%), Positives = 226/311 (72%)

Query:    21 CTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPE 80
             CT P CFFCSM +  P  RR+K+A  FKE+P +  +D   HVLVLSGL+NIA+ +PDDPE
Sbjct:     9 CTNPSCFFCSMKDTNPFRRRSKLAAIFKEIPRTESKD---HVLVLSGLWNIAMSEPDDPE 65

Query:    81 FPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVV 140
             FPSLG+FECM+KLIHK I +  WLL+DQNI+IPYYAAHIIGSY MNK   A  AV S V 
Sbjct:    66 FPSLGLFECMSKLIHKSIKNSVWLLKDQNIFIPYYAAHIIGSYVMNKEDLAAMAVDSKVF 125

Query:   141 L-P-LMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVV 198
             L P L+ELLRGKISWVE+R A RALGHLASH+K+FEAV+L+E EI++LA  IA NC + V
Sbjct:   126 LVPALLELLRGKISWVEQRAAARALGHLASHEKSFEAVSLFEEEIVKLAMEIATNCLKNV 185

Query:   199 YEKFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSF 258
             Y+ F+G++++ R+KY  DLLTRGLGGFE EN+KAEEW  QLQCWSL+LLNCFA R     
Sbjct:   186 YKSFLGVEDRGRLKYQSDLLTRGLGGFETENQKAEEWGIQLQCWSLFLLNCFASRVNR-- 243

Query:   259 DLICSQDFLKIVCGMWGGLANHTSPAGIGLIRAF-LKNVIESVCNVSRSSDDWQYAAIDS 317
                      K   G+  GL        +G  R   ++ VIE +C++SRSSDDW+  A+D+
Sbjct:   244 ---------KSPGGL--GLIKSLCKTELGRKRVSEVREVIERLCDLSRSSDDWKETALDT 292

Query:   318 LLLLLKDPDTR 328
             LLLLLKD + R
Sbjct:   293 LLLLLKDSNVR 303

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184073 AT5G10200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 271/554 (48%), Positives = 372/554 (67%)

Query:    21 CTKPYCFFCSMNEQPPSLRRAKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPE 80
             C  P CFFC M E  PS RR+ + + F++LP    +DD   VL +SGL+N A+  P+DPE
Sbjct:     9 CPYPGCFFCVMKEGNPSKRRSCILKFFRDLPS---QDDDGQVLPISGLWNTAMAHPNDPE 65

Query:    81 FPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVV 140
             F  LGIFECM+ LI KG+ ++ WL  DQNIYIPYYAAHIIGSYTMN   FAE+AV++GV+
Sbjct:    66 FIELGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAERAVEAGVI 125

Query:   141 LPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCFEVVYE 200
              PL+ELLRG+++WVE+RVAVRALGHLA++  TF AVA +  EI+ELA  +A +  E+VY 
Sbjct:   126 PPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAVADHG-EILELAIQLAMSSLEIVYS 184

Query:   201 KFVGLKEKKRVKYHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDL 260
              F    ++ R+ YHCDLLTRG+GG E+E+RKAEEWASQLQCWSL L+NCFA +       
Sbjct:   185 HFYQYPDR-RLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEF-LPT 242

Query:   261 ICSQDFLKIVCGMWGGLANHTSPAGIGLIRAFLKN------------VIESVCNVSRSSD 308
             +C  +FL  +  MWGGL N  SPAGIGL+R   ++            +IE++CN++RSSD
Sbjct:   243 LCKPEFLVNLPVMWGGLVNENSPAGIGLLRTICQHKLGRGPVSACAGMIEALCNIARSSD 302

Query:   309 DWQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHK 368
             DWQY AI+ LL LL+DP+T ++VID A   LVDL E+ +L   +++G++I  ++LQ+   
Sbjct:   303 DWQYMAIECLLWLLQDPNTSHKVIDKAVPTLVDLAEITNLGDHKKLGDSIV-SVLQECSS 361

Query:   369 VKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAG 428
             +  GN   +S++    ++E  + + Q+ K EK M  E++   + +  ++K +GN  F +G
Sbjct:   362 M--GN---RSREL---IEETVNSR-QRLKWEKSMPKEDLHIKQAAALVVKLEGNSLFSSG 412

Query:   429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAXXXXXXXXX 488
              I  A +KYS+AL LCP++ +KER+VLYSNRAQC+L+L++P  AISD TRA         
Sbjct:   413 DIAGAAEKYSEALSLCPMRSKKERVVLYSNRAQCHLLLQQPLVAISDATRALCLHNPVNR 472

Query:   489 XXXXXWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTN-------RVKIPYYAAVMINK 541
                  WRR+QAYDM+GLAKESL+DA+ FI    +C  +N       + K+P YA  ++ K
Sbjct:   473 HAKSLWRRAQAYDMLGLAKESLLDAILFIN---ECSQSNDPDLSMRQNKVPDYAERLVKK 529

Query:   542 QMNATWPFIHAKSK 555
             QM A W F  A  K
Sbjct:   530 QMRAAWLFKEAALK 543

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 41/114 (35%), Positives = 61/114 (53%)

Query:   399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
             EK MSDEE ++       LK++GN++F  G   EA   YS+AL++CP   +KER +L+SN
Sbjct:   101 EKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSN 160

Query:   459 RAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
             RA   +   K E AI+D ++A               RR++ Y+      E+L D
Sbjct:   161 RAAARMKQDKKEMAINDCSKAIQLNPSYIRAIL---RRAELYEKTDKLDEALED 211

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

UNIPROTKB|Q3ZBR5 TTC1 "Tetratricopeptide repeat protein 1" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 41/114 (35%), Positives = 58/114 (50%)

Query:   399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
             EK M DEE K        LK++GN++F  G   EA   Y++AL  CP   +K+R VL+SN
Sbjct:   101 EKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSN 160

Query:   459 RAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
             RA   +  +K E AISD ++A               RR++ Y+      E+L D
Sbjct:   161 RAAARMKQEKKEMAISDCSKAIQLNPSYIRAIL---RRAELYEKTDKLDEALED 211

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|F1RR38 TTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 40/114 (35%), Positives = 58/114 (50%)

Query:   399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
             EK M DEE K        LK++GN++F  G   EA   Y++AL +CP   +K+R +L+SN
Sbjct:   101 EKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSN 160

Query:   459 RAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
             RA   +   K E AISD ++A               RR++ Y+      E+L D
Sbjct:   161 RAAARMKQDKKEMAISDCSKAIQLNPNYIRAIL---RRAELYEKTDKLDEALED 211

GO:0005778 "peroxisomal membrane" evidence=IEA

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 44/135 (32%), Positives = 68/135 (50%)

Query:   378 SKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKY 437
             S  +   LDE + ++++K   E    +E+ K  E S   LK++GN+ F  G   EA   Y
Sbjct:    85 SDDSSSELDEEYLIELEKNMPE----EEKQKRREESA-KLKEEGNERFKRGDYMEAESSY 139

Query:   438 SKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRS 497
             S+AL +CP   +K+R VL+SNRA   +   K E AI+D ++A               RR+
Sbjct:   140 SQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAIL---RRA 196

Query:   498 QAYDMMGLAKESLMD 512
             + Y+      E+L D
Sbjct:   197 ELYEKTDKLDEALED 211

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

RGD|1359604 Ttc1 "tetratricopeptide repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 43/135 (31%), Positives = 70/135 (51%)

Query:   378 SKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKY 437
             S ++   L+E + ++++K   E    +E+ K  E S   LK++GN++F  G   EA   Y
Sbjct:    85 SDESSSELEEEYLIELEKNMPE----EEKQKRREESA-KLKEEGNEQFKRGDYVEAESSY 139

Query:   438 SKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRS 497
             S+AL +CP   +K+R VL+SNRA   +   K E AI+D ++A               RR+
Sbjct:   140 SQALQMCPACFQKDRSVLFSNRAAARMKQDKKEMAITDCSKAIQLNPTYIRAIL---RRA 196

Query:   498 QAYDMMGLAKESLMD 512
             + Y+      E+L D
Sbjct:   197 ELYEKTDKLDEALED 211

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IEA;ISO

UNIPROTKB|E1BWM0 TTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:   399 EKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN 458
             EK M +EE ++       LK++GN++F  G   EA   Y+KAL +CP   +K+R VL+SN
Sbjct:   105 EKDMPEEEKQKRRKESTTLKEKGNEQFKKGDYGEAEDSYTKALQICPACFQKDRAVLFSN 164

Query:   459 RAQCYLMLKKPEAAISDTTRA 479
             RA   +   K EAA++D ++A
Sbjct:   165 RAAAKMKQDKTEAALNDCSKA 185

GO:0005778 "peroxisomal membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-80 ttc1 "tetratricopeptide repeat domain 1" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 40/122 (32%), Positives = 63/122 (51%)

Query:   396 RKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVL 455
             R+ EK +++E+ +        LK++GN +F +G   EA + YS AL LCP+   K+R +L
Sbjct:   135 RELEKDLTEEDRESRRKESLELKEKGNAQFKSGEHVEAEESYSAALKLCPVCFTKDRSIL 194

Query:   456 YSNRAQCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMDALT 515
             +SNRA   L   K + AISD ++A               RR++ Y+      E+L D  T
Sbjct:   195 FSNRAASRLHQDKKDGAISDCSKAIELNPNYVRAIL---RRAELYEKTDKLDEALEDYKT 251

Query:   516 FI 517
              +
Sbjct:   252 VL 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019622001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (620 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	604
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 65.8 bits (160), Expect = 4e-11
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 14/119 (11%)

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ 461
           +S+EE K+       LK++GN+ +      +A+K YSKA++       K   V YSNRA 
Sbjct: 118 LSEEERKKYAAK---LKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAA 168

Query: 462 CYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD--ALTFIG 518
           C+  L   E  + DTT AL L      +SK+L RR+ AYD +G   ++L+D  A   I 
Sbjct: 169 CHNALGDWEKVVEDTTAALELD---PDYSKALNRRANAYDGLGKYADALLDLTASCIID 224

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475
            L   GN  +  G  +EA++ Y KAL+L P     +    Y N A  Y  L K E A+ D
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALED 56

Query: 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFI 517
             +AL L      ++K+ +    AY  +G  +E+L      +
Sbjct: 57  YEKALEL---DPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-KKPEAAISD 475
           LK  GN  F  G  +EA++ Y KAL+L P     +    Y N A  YL L K  E A+ D
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDP-----DNAEAYYNLALAYLKLGKDYEEALED 60

Query: 476 TTRALSLSK 484
             +AL L  
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485
           G  EEA++ Y KAL+L P     +    Y N    Y  L K E A+    +AL L   
Sbjct: 48  GKYEEALEDYEKALELDP-----DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
KOG0553	304	consensus TPR repeat-containing protein [General f	99.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
KOG4234	271	consensus TPR repeat-containing protein [General f	99.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.5
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.49
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.45
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.36
PRK15359	144	type III secretion system chaperone protein SscB;	99.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.29
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.28
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.22
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.22
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
PRK11189	296	lipoprotein NlpI; Provisional	99.2
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.17
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.06
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.03
KOG4555	175	consensus TPR repeat-containing protein [Function	99.0
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.98
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.97
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.97
KOG1126	638	consensus DNA-binding cell division cycle control	98.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.87
PRK15359	144	type III secretion system chaperone protein SscB;	98.84
PRK12370	553	invasion protein regulator; Provisional	98.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.8
PRK12370	553	invasion protein regulator; Provisional	98.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.77
PRK15331	165	chaperone protein SicA; Provisional	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.72
PLN02789	320	farnesyltranstransferase	98.72
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.71
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.64
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.63
PLN02789	320	farnesyltranstransferase	98.63
PRK11189	296	lipoprotein NlpI; Provisional	98.62
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.61
PRK10803	263	tol-pal system protein YbgF; Provisional	98.58
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.57
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.57
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.56
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.56
PF13371	73	TPR_9: Tetratricopeptide repeat	98.54
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.53
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.53
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.52
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.51
KOG1126	638	consensus DNA-binding cell division cycle control	98.5
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.46
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.42
PF13512	142	TPR_18: Tetratricopeptide repeat	98.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.37
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.36
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.3
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.27
KOG1310	758	consensus WD40 repeat protein [General function pr	98.25
PF13371	73	TPR_9: Tetratricopeptide repeat	98.23
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.19
PF12688	120	TPR_5: Tetratrico peptide repeat	98.19
KOG2076	895	consensus RNA polymerase III transcription factor	98.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.16
KOG0553	304	consensus TPR repeat-containing protein [General f	98.15
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.14
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.13
KOG2076	895	consensus RNA polymerase III transcription factor	98.12
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.07
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.05
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.0
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.99
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.98
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.98
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.96
KOG1125	579	consensus TPR repeat-containing protein [General f	97.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.93
KOG2003	840	consensus TPR repeat-containing protein [General f	97.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.88
PRK14574	822	hmsH outer membrane protein; Provisional	97.86
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.75
KOG2003	840	consensus TPR repeat-containing protein [General f	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.71
PRK14574	822	hmsH outer membrane protein; Provisional	97.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.68
KOG4234	271	consensus TPR repeat-containing protein [General f	97.63
PRK11906	458	transcriptional regulator; Provisional	97.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.6
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.59
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.56
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.54
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.43
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.41
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.41
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.4
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.34
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.27
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.24
PF13431	34	TPR_17: Tetratricopeptide repeat	97.23
KOG1129	478	consensus TPR repeat-containing protein [General f	97.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.21
KOG1129	478	consensus TPR repeat-containing protein [General f	97.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.2
PF13428	44	TPR_14: Tetratricopeptide repeat	97.2
PRK11906	458	transcriptional regulator; Provisional	97.17
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.17
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.17
PF13431	34	TPR_17: Tetratricopeptide repeat	97.16
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.06
PF12688	120	TPR_5: Tetratrico peptide repeat	97.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.02
PRK10803	263	tol-pal system protein YbgF; Provisional	96.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.88
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.81
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.7
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.69
PRK15331	165	chaperone protein SicA; Provisional	96.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.66
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.64
KOG4555	175	consensus TPR repeat-containing protein [Function	96.58
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.51
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.49
PF13428	44	TPR_14: Tetratricopeptide repeat	96.35
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.32
PRK10941	269	hypothetical protein; Provisional	96.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.25
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.25
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.2
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.16
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.99
PF13512	142	TPR_18: Tetratricopeptide repeat	95.85
PLN03077	857	Protein ECB2; Provisional	95.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.58
PRK04841	903	transcriptional regulator MalT; Provisional	95.57
PRK04841	903	transcriptional regulator MalT; Provisional	95.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.54
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.47
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.39
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.36
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.27
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.27
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.19
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.85
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.79
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.75
PLN03218	1060	maturation of RBCL 1; Provisional	94.74
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.73
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.72
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.7
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.61
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.55
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.42
PRK10941	269	hypothetical protein; Provisional	94.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.23
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.18
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.1
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.08
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.94
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.9
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.4
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.17
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.11
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.08
PLN03218	1060	maturation of RBCL 1; Provisional	93.05
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	92.78
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.56
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.54
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.79
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.63
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.51
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.44
PLN03077	857	Protein ECB2; Provisional	91.28
KOG2471	696	consensus TPR repeat-containing protein [General f	91.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.02
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.8
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	90.45
COG2912	269	Uncharacterized conserved protein [Function unknow	90.39
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	90.05
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.71
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	89.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	89.37
KOG1586	288	consensus Protein required for fusion of vesicles	89.12
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	89.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.32
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.8
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.45
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.38
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.85
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	86.37
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	85.32
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	84.9
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	84.83
COG2912	269	Uncharacterized conserved protein [Function unknow	84.68
KOG3364	149	consensus Membrane protein involved in organellar	83.49
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	83.35
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.39
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.37
KOG2471	696	consensus TPR repeat-containing protein [General f	82.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	81.52
KOG3364	149	consensus Membrane protein involved in organellar	81.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	81.32
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	80.63

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=9.8e-19  Score=179.76  Aligned_cols=124  Identities=27%  Similarity=0.297  Sum_probs=113.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      +....++.+|.+||.+++.++|++|+.+|++||+++|.     ++++|+|||++|.+||.|+.|++||..||++||.   
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-----nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---  147 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-----NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---  147 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---
Confidence            57778999999999999999999999999999999999     9999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      +.|+|-|+|.+|+.+|++++|+..|+++|++     +|.+......+...-++..+.
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999     455556666666655555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=1.7e-18  Score=180.17  Aligned_cols=179  Identities=21%  Similarity=0.247  Sum_probs=157.3

Q ss_pred             hcCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHH--HHHHHHH
Q 046116          322 LKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLK--VQKRKKE  399 (604)
Q Consensus       322 l~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~k--vE~~~~E  399 (604)
                      +--|+|+|+||||++++|+||+.|+++.+     |+...++++....+++|.+..+..++..+|..-....  .+.+.+.
T Consensus        75 ifrRaT~yLAmGksk~al~Dl~rVlelKp-----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl  149 (504)
T KOG0624|consen   75 IFRRATVYLAMGKSKAALQDLSRVLELKP-----DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL  149 (504)
T ss_pred             HHHHHHHHhhhcCCccchhhHHHHHhcCc-----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            45699999999999999999999999999     9999999999999999999998888888887644222  0122222


Q ss_pred             hccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          400 KLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       400 ~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ..+         +.-..+..+...++..|++..||+..++.|+++||     ++.++..||.||...|+...||.|.+.|
T Consensus       150 ~~~---------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-----da~l~~~Rakc~i~~~e~k~AI~Dlk~a  215 (504)
T KOG0624|consen  150 ALI---------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-----DASLRQARAKCYIAEGEPKKAIHDLKQA  215 (504)
T ss_pred             HhH---------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-----hhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            222         23456777888899999999999999999999999     9999999999999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      -+|..+   +++++|..++.+|..|+.+.++...++||+++|.
T Consensus       216 skLs~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  216 SKLSQD---NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD  255 (504)
T ss_pred             Hhcccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence            999999   9999999999999999999999999999999653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=5.3e-18  Score=166.20  Aligned_cols=122  Identities=40%  Similarity=0.524  Sum_probs=115.8

Q ss_pred             HHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHH
Q 046116          397 KKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT  476 (604)
Q Consensus       397 ~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~  476 (604)
                      +.++.+++++.......+..+|..||.+|++|+|++|...|+.||+++|....+..+.+|.|||.|+++++.++.||.+|
T Consensus        78 e~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   78 EIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            56777888777777889999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++||+|+|.   +.+|+.|||.+|.++.+|++|+.||++.++.+|
T Consensus       158 sKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  158 SKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            999999999   999999999999999999999999999999944

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=3.2e-16  Score=168.91  Aligned_cols=125  Identities=34%  Similarity=0.442  Sum_probs=111.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ++.+.+..+|++||.+|++|+|++||.+|++||+++|+     .+..|+|||.||..+|+|++.++||++||+++|+   
T Consensus       110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-----epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---  181 (606)
T KOG0547|consen  110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-----EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---  181 (606)
T ss_pred             HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-----CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---
Confidence            45678999999999999999999999999999999999     6999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      +.||++||+.+|..+|+++||+.|....-=+    .+-.|.++...++|+++++...
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~----~~F~n~s~~~~~eR~Lkk~a~~  234 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVLCIL----EGFQNASIEPMAERVLKKQAMK  234 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHHHHh----hhcccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999997643222    1234567888899998887654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.4e-15  Score=163.84  Aligned_cols=248  Identities=20%  Similarity=0.193  Sum_probs=157.9

Q ss_pred             HHHHHhhcCCchh--------hHHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhcccccc-hhHHHHHHHHh---h
Q 046116          298 ESVCNVSRSSDDW--------QYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRER-VGEAITQTLLQ---D  365 (604)
Q Consensus       298 ~~lc~~~rssd~w--------q~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eLg~~~~-lGd~i~k~L~~---d  365 (604)
                      ..|-|.+++.-+.        +-+.+|.=+..+-..+++|.=+|+-.....+-+.-.+-|.-.. --+.|.+.+.+   .
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a  307 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA  307 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence            3567777765542        1122333334455677788888877766666665555443211 13444444444   2


Q ss_pred             hhccccCccccccHHHHHHHHHHHH----HHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116          366 YHKVKYGNLKLKSKKAGRALDEIWD----LKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKAL  441 (604)
Q Consensus       366 y~~ik~g~L~~~~~~~~~aL~el~~----~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkAL  441 (604)
                      |...  ++......-+...+.....    .+....++.....+...-..+..+...+..||.+|+.|+|.+|+..||+||
T Consensus       308 ~~k~--~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI  385 (539)
T KOG0548|consen  308 YTKR--EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI  385 (539)
T ss_pred             hhhH--HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            2221  2222222222222222111    000000111111111112234568899999999999999999999999999


Q ss_pred             HhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          442 DLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       442 el~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+|+     ++.+|+|||.||++++++..|++||+.+++++|+   +.++|+|.|.++..+.+|+.|++.|+++++++|
T Consensus       386 kr~P~-----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  386 KRDPE-----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---FIKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             hcCCc-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999     9999999999999999999999999999999999   999999999999999999999999999999954


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCc
Q 046116          522 KCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPS  560 (604)
Q Consensus       522 ~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~  560 (604)
                           ++..+...+.+....+..........++.|-++.
T Consensus       458 -----~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpe  491 (539)
T KOG0548|consen  458 -----SNAEAIDGYRRCVEAQRGDETPEETKRRAMADPE  491 (539)
T ss_pred             -----hhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHH
Confidence                 3334444444444443333333333444444433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=6.8e-16  Score=164.23  Aligned_cols=145  Identities=22%  Similarity=0.185  Sum_probs=129.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTR  478 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r  478 (604)
                      ++...+...++.||.+|+.|+|..|+..|.+|+..-+.          ........+|.|+|.||+++++|.+|+..|++
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            67788999999999999999999999999999987442          22235678999999999999999999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcC
Q 046116          479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCK  558 (604)
Q Consensus       479 ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k  558 (604)
                      +|.++|+   |.||+||+|+|+..+|+|+.|+.+|++++++     +|.|..+...+.++.++.+......++...+|+.
T Consensus       283 vLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-----~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  283 VLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALKL-----EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999   9999999999999999999999999999999     5677779999999988888887777778888876


Q ss_pred             Cch
Q 046116          559 PSI  561 (604)
Q Consensus       559 ~~~  561 (604)
                      ...
T Consensus       355 k~~  357 (397)
T KOG0543|consen  355 KLA  357 (397)
T ss_pred             ccc
Confidence            554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=3.9e-15  Score=158.26  Aligned_cols=106  Identities=27%  Similarity=0.323  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .++..+.+++.||.+|++|+|..|.++|++||.++|+ ..+.++.+|.|||.++..+|+..+||.||+.|++|||.   +
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---y  320 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---Y  320 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---H
Confidence            3457889999999999999999999999999999998 67789999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .|||.++|.||..+++|++|++||++|++.
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.56  E-value=6.7e-15  Score=153.55  Aligned_cols=108  Identities=31%  Similarity=0.314  Sum_probs=101.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      .++..+.+.+++++||.+|++|+|++||.+|+++|..+|.     +++++.|||.+|+++++|..|..||+.|+.||.. 
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-  163 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-  163 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-
Confidence            4445667778999999999999999999999999999998     8999999999999999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        +.|||-|||.+...+|+..||.+||+.+|++.|+
T Consensus       164 --Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  164 --YVKAYSRRMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             --HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence              9999999999999999999999999999999443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.2e-13  Score=150.66  Aligned_cols=113  Identities=27%  Similarity=0.341  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..++.+||.+|..|+|+.||.+|++||.++|.     +..+|+||+.||.++|+|++|++|.++.++++|+   ++|+|
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy   73 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGY   73 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHH
Confidence            567899999999999999999999999999999     9999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      .|+|.++..+|+|++|+..|.+.|+.+     |+|..+..-+...-
T Consensus        74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d-----~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   74 SRKGAALFGLGDYEEAILAYSEGLEKD-----PSNKQLKTGLAQAY  114 (539)
T ss_pred             HHhHHHHHhcccHHHHHHHHHHHhhcC-----CchHHHHHhHHHhh
Confidence            999999999999999999999999994     44444444444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.1e-13  Score=142.01  Aligned_cols=103  Identities=26%  Similarity=0.293  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      .|+.+|+.||.+|+.++|..|+..|+++|.. +++  +.+++++|+|||+|.+.+|+|..||.||.+|+.++|+   |.|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D--~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~K  154 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD--PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLK  154 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC--ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhh
Confidence            7999999999999999999999999999997 444  6689999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ||||=|+|++.+.++++|+.-+...+..+
T Consensus       155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  155 AYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999998888773

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.45  E-value=1.1e-12  Score=140.15  Aligned_cols=116  Identities=20%  Similarity=0.205  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..++.+|+.+|..|+|++|++.|++||+++|+     ++.+|.+||.+|+++|+|++|+.++++|++++|+   +..+|
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~   73 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-----NAELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAY   73 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHH
Confidence            346889999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ  542 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq  542 (604)
                      +++|.+|+.+|+|++|+..|++++++.     |.+..+...+.+...+.
T Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         74 LRKGTACMKLEEYQTAKAALEKGASLA-----PGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999994     44555666665554444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=7.9e-13  Score=133.34  Aligned_cols=115  Identities=25%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             ccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-----CcccchHHHHHHHHHHHHHcC
Q 046116          401 LMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPL-----KMRKERIVLYSNRAQCYLMLK  467 (604)
Q Consensus       401 ~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~-----~~~~~~a~l~~NRA~~ylkLg  467 (604)
                      .|++   .++.+.+..+.++||.+|+.|+|.+|+.+|..||..        .|.     +..+....++.|.++|++..|
T Consensus       168 qlsd---deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  168 QLSD---DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             cCCc---hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            6666   366778899999999999999999999999999875        343     233456789999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          468 KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       468 dy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +|-++++.|+.+|..+|+   |.||||+||+++....+..||..||..+|+++|
T Consensus       245 e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            999999999999999999   999999999999999999999999999999943

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.36  E-value=1e-11  Score=140.79  Aligned_cols=102  Identities=37%  Similarity=0.446  Sum_probs=96.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      +....+..++++||.+|+.|+|++|+..|+++|++.|+      +..|.|+|.||.++|+|++|+.+|++|++++|+   
T Consensus       122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---  192 (615)
T TIGR00990       122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPD---  192 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---
Confidence            34567889999999999999999999999999999997      678999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +.++++++|.+|..+|++++|+.+|..++..
T Consensus       193 ~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~  223 (615)
T TIGR00990       193 YSKALNRRANAYDGLGKYADALLDLTASCII  223 (615)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.36  E-value=1.9e-11  Score=114.46  Aligned_cols=98  Identities=21%  Similarity=0.183  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      +...|..+++.|+|++|+..|.+++.++|+     +..+|.++|.++..+|++++|+..++++++++|+   ++.+++++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~l   98 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence            556899999999999999999999999999     9999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          497 SQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       497 G~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |.++..+|++++|+..|+++++..|+
T Consensus        99 g~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         99 GVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999553

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.4e-12  Score=129.44  Aligned_cols=130  Identities=25%  Similarity=0.222  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..++++||.+|....|..||..|++||.++|.     .+..|.|||.||+++++|+.+..||.+|++++|+   ..++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~   80 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKA   80 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCC-----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHH
Confidence            6889999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKS  554 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~r  554 (604)
                      +|-+|+++.....|++|+..++++..+..+..-+    ....+...+...+...|...+..|
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~----~~~di~~~L~~ak~~~w~v~e~~R  138 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT----FGDDIPKALRDAKKKRWEVSEEKR  138 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhCccchhHHHH
Confidence            9999999999999999999999998874332222    333455666777777787776665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.29  E-value=6.3e-11  Score=113.26  Aligned_cols=118  Identities=11%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ..+.+...|..++..|++++|...|.-+..++|+     ++..|+|+|.|+..+|+|.+||..|.+|+.++|+   ++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~  105 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQA  105 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchH
Confidence            5678899999999999999999999999999999     9999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      +++.|.|+..+|+.+.|.+.|+.++..+.  ..|....+....+..+.
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~--~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICG--EVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHH
Confidence            99999999999999999999999999973  22344455555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.28  E-value=1e-10  Score=105.61  Aligned_cols=104  Identities=17%  Similarity=0.165  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+......|..+++.|+|++|++.|++++..+|+     ++.++.++|.++..+|++++|+..++++++++|+   +
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~   84 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-----NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---D   84 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C
Confidence            3445677889999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ...++.+|.++..+|++++|+..|+++++..+
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999954

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.22  E-value=9.3e-12  Score=135.15  Aligned_cols=102  Identities=28%  Similarity=0.311  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+++++|.+|+.++|+.|+..|++||+++|+     .+.++.|||++|++.++|..|+.|+.+|++++|.   +.|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~   74 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN-----CAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKA   74 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-----ceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhhe
Confidence            4778999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |+|+|.+...++++.+|+.+|+...++.|+
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence            999999999999999999999999999664

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.22  E-value=3.5e-10  Score=125.41  Aligned_cols=115  Identities=17%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             ccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116          401 LMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL  480 (604)
Q Consensus       401 ~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL  480 (604)
                      .+....++-.+.-+....+.|..+-++|++++||.+|.+||.+.|.     .+..|+|++..|-.+|+.+.|++++++||
T Consensus       375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-----fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-----FADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-----HHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            4455566677788999999999999999999999999999999999     99999999999999999999999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       481 eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      .++|.   .++|+-++|.+|...|+..+|+..|+.||++.|+.
T Consensus       450 ~~nPt---~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  450 QINPT---FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             hcCcH---HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            99999   99999999999999999999999999999996643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=3.5e-10  Score=111.68  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=98.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhcCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY-LMLKK--PEAAISDTTRALSLSK  484 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y-lkLgd--y~eAI~D~~rALeLdP  484 (604)
                      +..+..++.|...|..+...|+|++|+..|++|+.+.|+     ++.++.+.|.++ ...|+  +++|+..++++++++|
T Consensus        67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            344557889999999999999999999999999999999     999999999985 78788  5999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +   +..+++.+|.++..+|++++|+..++++++..+
T Consensus       142 ~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        142 N---EVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9   999999999999999999999999999999943

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.20  E-value=2e-10  Score=119.48  Aligned_cols=103  Identities=19%  Similarity=0.069  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+.++|..+...|++++|+..|++|++++|+     ++.+|.++|.+|..+|++++|+..++++++++|+   +..
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~  133 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNY  133 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence            35778999999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +++++|.+++..|++++|+.+|+++++..|+
T Consensus       134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.17  E-value=1.4e-10  Score=121.63  Aligned_cols=228  Identities=15%  Similarity=0.089  Sum_probs=158.6

Q ss_pred             cCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 046116          323 KDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLM  402 (604)
Q Consensus       323 ~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~m  402 (604)
                      .-|+.-|.+.|.-+.|+.|+-.+..|..-  ..+.+.+.-+..|.-   |+.......    +.+...+..+.  +...-
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~v---gd~~~sL~~----iRECLKldpdH--K~Cf~  261 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTV---GDAENSLKE----IRECLKLDPDH--KLCFP  261 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhh---hhHHHHHHH----HHHHHccCcch--hhHHH
Confidence            34677788889999999999988888431  223333333334433   221111111    11111111000  00000


Q ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                          .-...+.+......+......++|.++++.+.+.++.+|. ........+--.+.||..-+++.+||..|+++|.+
T Consensus       262 ----~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~-~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~  336 (504)
T KOG0624|consen  262 ----FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE-ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI  336 (504)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc-ccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence                1122334555566677788899999999999999999998 23334455556789999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCchh
Q 046116          483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSII  562 (604)
Q Consensus       483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~~~  562 (604)
                      +|+   ++.++..||.+|+.-.+|++|+.||++|++.     ++++..+.+-+++..+..++.      .+|.+++..+ 
T Consensus       337 d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~-----n~sn~~~reGle~Akrlkkqs------~kRDYYKILG-  401 (504)
T KOG0624|consen  337 DPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL-----NESNTRAREGLERAKRLKKQS------GKRDYYKILG-  401 (504)
T ss_pred             Cch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHh------ccchHHHHhh-
Confidence            999   9999999999999999999999999999999     455666666666654443333      4456666666 


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccc
Q 046116          563 EEKLVEKTCRRRKLEKARRKKKE  585 (604)
Q Consensus       563 e~~lvek~~~~~k~ekArRk~~~  585 (604)
                          |.++++++++-|||||.-.
T Consensus       402 ----VkRnAsKqEI~KAYRKlAq  420 (504)
T KOG0624|consen  402 ----VKRNASKQEITKAYRKLAQ  420 (504)
T ss_pred             ----hcccccHHHHHHHHHHHHH
Confidence                8999999999999998643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.12  E-value=2.4e-10  Score=92.44  Aligned_cols=67  Identities=31%  Similarity=0.373  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSLSK  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeLdP  484 (604)
                      .+..+...|..++..|+|++|+..|++||+++|+     ++.+|.|+|.||..+| ++.+|+.++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3677888899999999999999999999999988     8889999999999998 68999999999998887

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.06  E-value=2.1e-09  Score=85.39  Aligned_cols=98  Identities=31%  Similarity=0.343  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .+...|..++..|++++|+..+.++++..|.     ...++.++|.++...+++++|+..+++++.+.|.   +..+++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~   73 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN   73 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence            3667899999999999999999999999998     6789999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +|.++...|++++|...+.++++..+
T Consensus        74 ~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          74 LGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            99999999999999999999998743

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.06  E-value=2.4e-09  Score=121.55  Aligned_cols=102  Identities=14%  Similarity=0.004  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|+++++++|+     +...+.++|.++.++|++++|+..+++++++.|+   ++.+
T Consensus       398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~  469 (615)
T TIGR00990       398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDV  469 (615)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH
Confidence            4678899999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.++..+|++++|+..|++++++.++
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       470 YNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.03  E-value=5.6e-09  Score=90.93  Aligned_cols=107  Identities=10%  Similarity=-0.011  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ++.+...|..+++.|+|++|+..|.+++...|+  ......++.++|.++.+.|++++|+..++.++..+|+......++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            356788999999999999999999999999987  122367899999999999999999999999999999833347889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+|.++..+|++++|+..+.++++..|+
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.00  E-value=3.8e-09  Score=98.46  Aligned_cols=105  Identities=23%  Similarity=0.255  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SS  488 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~  488 (604)
                      ..+....+-.+|..+...|+.++|++.|++||.++|.     ++++|+|||++|...|+.++|+.|+++|+++..+. ..
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt  113 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT  113 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH
Confidence            3456778889999999999999999999999999999     99999999999999999999999999999998772 23


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      --.+|..||.+|..+|+-+.|..||..+.++
T Consensus       114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            4568999999999999999999999999988

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.98  E-value=1.5e-09  Score=87.71  Aligned_cols=67  Identities=19%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~  521 (604)
                      ++..|.++|.+++.+|+|++|+.+++++++++|+   ++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            6889999999999999999999999999999999   9999999999999999 79999999999999843

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.97  E-value=3.3e-09  Score=117.82  Aligned_cols=113  Identities=22%  Similarity=0.170  Sum_probs=105.2

Q ss_pred             cChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116          402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS  481 (604)
Q Consensus       402 ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe  481 (604)
                      .....+.-.+..++.+.+.||.+..+|++++|+..|.+|++..|.     .+..++|+|.+|-+.|++++|+..|++||+
T Consensus       342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            334455556678999999999999999999999999999999999     999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          482 LSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       482 LdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++|.   .+.||.++|..|-.+|+.++|+.+|.+||...|-
T Consensus       417 I~P~---fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  417 IKPT---FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             cCch---HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            9999   9999999999999999999999999999998554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.97  E-value=3.5e-10  Score=118.83  Aligned_cols=106  Identities=26%  Similarity=0.309  Sum_probs=100.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      ++..+.+...+-++..++..|++++||+.|+.||+++|.     .+.+|.+|+.++++++++..||.||..|++++|+  
T Consensus       108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--  180 (377)
T KOG1308|consen  108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--  180 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-----hhhhcccccceeeeccCCchhhhhhhhhhccCcc--
Confidence            345557788999999999999999999999999999999     9999999999999999999999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                       .++.|--||.++..+|++++|..|+..+.+++.
T Consensus       181 -sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  181 -SAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             -cccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence             999999999999999999999999999999954

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=7.8e-09  Score=115.77  Aligned_cols=129  Identities=12%  Similarity=0.054  Sum_probs=110.6

Q ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      ..+-+...+...+.|...||.+--+++++.||++|.+||.++|.     .+-+|...|.=+....+|+.|...++.||.+
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-----FAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-----cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            33344455567889999999999999999999999999999999     8889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      +|.   |..|||-+|.+|.++++++.|.-.|++|+++     +|.+..+...+-....+.++
T Consensus       485 ~~r---hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~nsvi~~~~g~~~~~~k~  538 (638)
T KOG1126|consen  485 DPR---HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSNSVILCHIGRIQHQLKR  538 (638)
T ss_pred             Cch---hhHHHHhhhhheeccchhhHHHHHHHhhhcC-----CccchhHHhhhhHHHHHhhh
Confidence            999   9999999999999999999999999999999     45566666666555544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.91  E-value=1.3e-07  Score=113.14  Aligned_cols=102  Identities=10%  Similarity=-0.100  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+.+.|..+.+.|++++|+..|.++++++|+     ++.++.|+|.++..+|++++|+..+++|++++|+   ++.++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~  680 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD---DPALI  680 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            678899999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      +.+|.++..+|++++|+..|++++++.|+.
T Consensus       681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999995543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.91  E-value=1.9e-08  Score=96.20  Aligned_cols=93  Identities=20%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      .+...+..+...|..+...|+|++|+..|.+++++.|+.  ...+.++.++|.+|.++|++++|+..+.++++++|+   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---  104 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---  104 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence            355678899999999999999999999999999987761  124679999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCH
Q 046116          489 HSKSLWRRSQAYDMMGLA  506 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~  506 (604)
                      +..++..+|.++..+|+.
T Consensus       105 ~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             cHHHHHHHHHHHHHcCCh
Confidence            999999999999998873

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.88  E-value=5e-09  Score=88.61  Aligned_cols=84  Identities=26%  Similarity=0.294  Sum_probs=74.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Q 046116          426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL  505 (604)
Q Consensus       426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd  505 (604)
                      .+|+|+.|+..|.++++..|.  .. +...+.++|.||+++|+|++|+..+++ ++.+|.   +...++-.|+|+..+|+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCC
Confidence            368999999999999999995  11 567888899999999999999999999 999999   89999999999999999


Q ss_pred             HHHHHHHHHHH
Q 046116          506 AKESLMDALTF  516 (604)
Q Consensus       506 ~dEAL~d~~kA  516 (604)
                      +++|+..|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.88  E-value=3.5e-08  Score=93.29  Aligned_cols=108  Identities=14%  Similarity=0.017  Sum_probs=92.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS--  483 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd--  483 (604)
                      .++..+..+..+...|..++..|++++|++.|.++++..|.     ....+.+++.++...|++++|+..+.+++...  
T Consensus        57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  131 (234)
T TIGR02521        57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY  131 (234)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence            34455667788888999999999999999999999999998     78889999999999999999999999999864  


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |.   ....++.+|.++...|++++|...|.++++..+
T Consensus       132 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       132 PQ---PARSLENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            33   677888899999999999999999999998843

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.87  E-value=3.7e-08  Score=93.54  Aligned_cols=103  Identities=15%  Similarity=-0.009  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|..++..|+|++|+..|.+|+.+.|+  ....+.++.|+|.+|..+|++++|+..+.+|+.++|.   +..
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~  107 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQ  107 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHH
Confidence            36888999999999999999999999999999775  2234669999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHH-------HcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYD-------MMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~-------~LGd~dEAL~d~~kALkl  519 (604)
                      ++..+|.++.       .+|++++|+.++.+++..
T Consensus       108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~  142 (168)
T CHL00033        108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY  142 (168)
T ss_pred             HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999999       888988888777777665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.84  E-value=2.5e-08  Score=93.47  Aligned_cols=88  Identities=17%  Similarity=0.047  Sum_probs=82.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+.....+...|..+...|+|++|+..|.+|++++|.     ++..++++|.|+..+|++++|+..+++|++++|+   
T Consensus        53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~---  124 (144)
T PRK15359         53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA---  124 (144)
T ss_pred             cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence            34456889999999999999999999999999999999     9999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcC
Q 046116          489 HSKSLWRRSQAYDMMG  504 (604)
Q Consensus       489 n~KA~~rrG~a~~~LG  504 (604)
                      ++.++..+|.+...++
T Consensus       125 ~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        125 DASWSEIRQNAQIMVD  140 (144)
T ss_pred             ChHHHHHHHHHHHHHH
Confidence            9999999999887654

>PRK12370 invasion protein regulator; Provisional

Probab=98.80  E-value=4.5e-08  Score=110.32  Aligned_cols=102  Identities=11%  Similarity=-0.040  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..+...|++++|+..|.+|++++|+     ++.+|+++|.++..+|++++|+..++++++++|.   +
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~  405 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-----SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---R  405 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---C
Confidence            3444455555555555555555555555555555555     5555555555555555555555555555555555   5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..+++.++.+++.+|++++|+..++++++.
T Consensus       406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        406 AAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             hhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            555444555555555555555555555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.80  E-value=2.3e-07  Score=87.72  Aligned_cols=103  Identities=18%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +.....+...|..++..|++++|+..|.+++...+.   ......+.++|.++...|++++|+..+.++++.+|+   +.
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~  169 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY---PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RP  169 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---Ch
Confidence            344556778888899999999999999999885321   115677888899999999999999999999999998   88


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+++.+|.++...|++++|+..++++++.
T Consensus       170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       170 ESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999988887

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=98.79  E-value=7.4e-08  Score=108.61  Aligned_cols=103  Identities=17%  Similarity=0.038  Sum_probs=51.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-KT  485 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-Pd  485 (604)
                      ++..+..+..+...|..++..|++++|+..|.+|++++|.     ++..+.+++.+++.+|++++|+..+.++++.+ |+
T Consensus       365 l~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~  439 (553)
T PRK12370        365 NLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD  439 (553)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence            3334444444555555555555555555555555555555     33344444444444555555555555555443 34


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFI  517 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kAL  517 (604)
                         ++.+++.+|.+|..+|++++|...+.+..
T Consensus       440 ---~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        440 ---NPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             ---CHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence               44445555555555555555555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.77  E-value=1.2e-07  Score=109.14  Aligned_cols=106  Identities=15%  Similarity=0.020  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..+++.|++++|+..|+++++++|+     ++.++.++|.+|.++|++++|+..++++++.+|+   +.
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~---~~  352 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV---TS  352 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---ch
Confidence            345778899999999999999999999999999999     8999999999999999999999999999999999   88


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .+++.+|.++..+|++++|+..|+++++..|+..
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            8888899999999999999999999999977654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.77  E-value=8.7e-08  Score=92.42  Aligned_cols=120  Identities=14%  Similarity=-0.033  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +..+.+-..|..+|++|+|++|...|+-...++|.     ++..+..+|.|+..+++|++|+..|..|..++++   ++.
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~  106 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYR  106 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCC
Confidence            35678889999999999999999999999999999     8999999999999999999999999999999999   899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      ..|+.|+||..+|+.+.|...|..+++.      +....+......++...++.
T Consensus       107 p~f~agqC~l~l~~~~~A~~~f~~a~~~------~~~~~l~~~A~~~L~~l~~~  154 (165)
T PRK15331        107 PVFFTGQCQLLMRKAAKARQCFELVNER------TEDESLRAKALVYLEALKTA  154 (165)
T ss_pred             ccchHHHHHHHhCCHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999996      33445666565555544443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=3.3e-08  Score=109.52  Aligned_cols=105  Identities=20%  Similarity=0.192  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ++...-.|-.++-.|+|+.|+.+|+.||...|+     +..+|+.+|..+..-.+..+||+.|++|++|.|.   ++.+.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~R  501 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVR  501 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeee
Confidence            567788999999999999999999999999999     9999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHT  526 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~  526 (604)
                      |++|.+++.+|.|+||+..|..||....+...+
T Consensus       502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~  534 (579)
T KOG1125|consen  502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH  534 (579)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence            999999999999999999999999997775543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.72  E-value=3.4e-07  Score=106.06  Aligned_cols=105  Identities=9%  Similarity=-0.170  Sum_probs=99.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      ++..++.+....+.++.+++.+++++|+..+.+++..+|+     ++..++++|.++.++|+|++|+..|++++..+|+ 
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-  186 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-  186 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-
Confidence            3445668889999999999999999999999999999999     9999999999999999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                        +.+++..+|.++..+|+.++|...|+++++.
T Consensus       187 --~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        187 --FENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              9999999999999999999999999999998

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.72  E-value=1.9e-07  Score=92.44  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+++.|+|++|+..|.+++...|.  .......+.++|.+|..+|++++|+..++++++.+|++.....+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            5778999999999999999999999999999997  12234688999999999999999999999999999983223348


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMM--------GLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~L--------Gd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.+++.+        |++++|+..|+++++..|+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            99999999987        8999999999999999553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.72  E-value=3.2e-07  Score=97.29  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=105.3

Q ss_pred             HHhccChHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc--HHHHH
Q 046116          398 KEKLMSDEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP--EAAIS  474 (604)
Q Consensus       398 ~E~~ms~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy--~eAI~  474 (604)
                      +.-..+...++..++....|..+|..+...| ++++|+..++++|+.+|.     +..+|++|+.++.++++.  ++++.
T Consensus        55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-----nyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-----NYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-----chHHhHHHHHHHHHcCchhhHHHHH
Confidence            3334445566777888999999999999998 689999999999999999     899999999999999984  78899


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .++++++++|.   |..||..|+.++..+|++++|+..+.++|+.++.
T Consensus       130 ~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        130 FTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence            99999999999   9999999999999999999999999999999544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.71  E-value=9.7e-07  Score=101.79  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEE----AVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       414 A~~lk~~GN~lfk~Gdyee----AIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      +..+...|..++..|++++    |+..|+++++++|+     ++.++.++|.++..+|++++|+..++++++++|+   +
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~  317 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---L  317 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C
Confidence            3444455555555555553    55556666665555     5555666666666666666666666666666665   5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..+++.+|.++..+|++++|+..|+++++.
T Consensus       318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        318 PYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            555555666666666666666666555555

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=5e-08  Score=106.48  Aligned_cols=104  Identities=22%  Similarity=0.224  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ...++.+...|.-+|-.|++-+|-+.++++|.++|.     ...+|..||..|+..++-.+-..|+++|.++||.   |+
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~  394 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NP  394 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CC
Confidence            456889999999999999999999999999999999     7888999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..||.||+.++-+++|++|+.||++++.++|.
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe  426 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPE  426 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence            99999999999999999999999999999654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.69  E-value=8.3e-07  Score=100.57  Aligned_cols=100  Identities=20%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++.+|.     ....+..+|.++...|++++|+..++++++.+|+   +..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  195 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-----SLYAKLGLAQLALAENRFDEARALIDEVLTADPG---NVDA  195 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH
Confidence            4556667777777777777777777777777776     5667777777777777777777777777777777   7777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ++.+|.++...|++++|+..|+++++..
T Consensus       196 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~  223 (899)
T TIGR02917       196 LLLKGDLLLSLGNIELALAAYRKAIALR  223 (899)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            7777777777777777777777777663

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.69  E-value=5e-07  Score=104.72  Aligned_cols=100  Identities=8%  Similarity=-0.025  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..++.+...|....+.|.|++|...+..+++++|+     +..++.++|.+..+++++++|+..+++++..+|+   +..
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~  155 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAR  155 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHH
Confidence            35889999999999999999999999999999999     9999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +++.+|.++..+|+|++|+..|++++..
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            9999999999999999999999999985

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.64  E-value=1.1e-07  Score=76.20  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+|..+++.|+|++|+..|+++++..|.     ++.++..+|.++..+|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD-----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4677778888888888888888888887     7888888888888888888888888888888877

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=3.6e-07  Score=99.43  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=89.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH
Q 046116          375 KLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV  454 (604)
Q Consensus       375 ~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~  454 (604)
                      +..++++-..+.....++. ..++........++-++.....|.-.|.++...++-..||+.|++|++++|.     +..
T Consensus       326 dKyR~ETCCiIaNYYSlr~-eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-----DyR  399 (559)
T KOG1155|consen  326 DKYRPETCCIIANYYSLRS-EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-----DYR  399 (559)
T ss_pred             ccCCccceeeehhHHHHHH-hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-----hHH
Confidence            3444455555555555552 2233333344466677788999999999999999999999999999999998     555


Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +|+-+|++|--++-..=|+-++++|+++.|+   ....|.-+|.||.++++.+||++.|.+++..
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPN---DSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            5555555555555555555555555555555   5555555555555555555555555555555

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.7e-07  Score=99.25  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=100.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-------MRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL  480 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL  480 (604)
                      +.....++.++-+|..++-..+.+.|+..|.++|.++|+.       +.......+-++|.-.++.|+|..|...|+.||
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            3445578899999999999999999999999999999982       112245567789999999999999999999999


Q ss_pred             hcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          481 SLSKTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       481 eLdPd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+||++ .++++.|++|+.++..+|+.++|+.|+.+++++++
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            999995 56889999999999999999999999999999943

>PLN02789 farnesyltranstransferase

Probab=98.63  E-value=1.4e-06  Score=92.45  Aligned_cols=121  Identities=12%  Similarity=-0.011  Sum_probs=99.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYI--EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~Gdy--eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP  484 (604)
                      ++..++....|..+|..+.+.|++  +++++.++++|+.+|.     +..+|++|+.++..+|+|++|+.+++++|++||
T Consensus        99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~  173 (320)
T PLN02789         99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV  173 (320)
T ss_pred             HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence            344556777899999888888874  7899999999999999     999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          485 TMSSHSKSLWRRSQAYDMM---GLA----KESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~L---Gd~----dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      .   |..||++|+.++..+   |.+    ++++....++|+..|     .|.+.=.++..++.
T Consensus       174 ~---N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~  228 (320)
T PLN02789        174 R---NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFK  228 (320)
T ss_pred             C---chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHh
Confidence            9   999999999999887   333    467777789999954     44444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.62  E-value=5e-07  Score=94.11  Aligned_cols=101  Identities=14%  Similarity=-0.032  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .++.+..+...|..+...|+|++|+..|+++++++|+     +...+.|+|.++...|++++|+.+++++++++|+   +
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~---~  165 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN---D  165 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C
Confidence            3346789999999999999999999999999999999     8999999999999999999999999999999999   6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +...+- ...+...+++++|+..|.+++..
T Consensus       166 ~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        166 PYRALW-LYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence            531111 12345678999999999877654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.61  E-value=9.5e-07  Score=89.23  Aligned_cols=98  Identities=20%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +....+.|..++++|++..|.....+||+.+|+     +...|.-||..|.++|+.+.|-+.|++|++++|+   +...+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVL  106 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVL  106 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchh
Confidence            445556666666666666666666666666666     6666666666666666666666666666666666   66666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+-|.-++..|++++|...|++|+..
T Consensus       107 NNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063         107 NNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             hhhhHHHHhCCChHHHHHHHHHHHhC
Confidence            66666666666666666666666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.58  E-value=1.1e-06  Score=90.77  Aligned_cols=106  Identities=7%  Similarity=-0.120  Sum_probs=93.8

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          415 FMLKQQGNQE-FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       415 ~~lk~~GN~l-fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ....+.+..+ ++.|+|++|+..|.+.|...|+  ....+.+++.+|.+|+..|+|++|+..+.++++..|+......++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            4556666665 6789999999999999999998  233367899999999999999999999999999999866678999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +++|.++..+|++++|+..|+++++..|+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.2e-06  Score=91.20  Aligned_cols=126  Identities=14%  Similarity=0.016  Sum_probs=110.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLS  483 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLd  483 (604)
                      +..++..++.|.-.|..++..|++..|...|.+|+++.|+     ++.++.-.|.+++...   .-.++..-+++|+++|
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-----n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D  223 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-----NPEILLGLAEALYYQAGQQMTAKARALLRQALALD  223 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence            4456668999999999999999999999999999999999     8999999998888665   4678999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      |+   +..+.+-+|..++..|+|.+|+..++..++..     |.+.+-...+++.|......
T Consensus       224 ~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-----p~~~~rr~~ie~~ia~~~~~  277 (287)
T COG4235         224 PA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-----PADDPRRSLIERSIARALAQ  277 (287)
T ss_pred             Cc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHHHHhc
Confidence            99   99999999999999999999999999999994     45555666677766655443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.57  E-value=3.4e-06  Score=85.29  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=90.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      ++.+++....+..++..+.+.|+.+.|-+.|.+|+.++|+     +..+++|-|.-+...|+|++|...+++|+. +|..
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y  135 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY  135 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC
Confidence            3445556778888888888888888888999999998888     888888888888888888888888888887 4664


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .....++-+.|.|-++.|+++.|..+|+++|++++
T Consensus       136 ~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         136 GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence            44677888888888888888888888888888844

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.56  E-value=5.4e-06  Score=87.51  Aligned_cols=100  Identities=18%  Similarity=0.063  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA  492 (604)
                      +..+...|..+++.|++++|+..|.++++..|+     ....+..+|.+|.+.|++++|+..++++++.+|+   + ..+
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~  251 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQ-----CVRASILLGDLALAQGDYAAAIEALERVEEQDPE---YLSEV  251 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---hHHHH
Confidence            445677888889999999999999999999988     7888889999999999999999999999998887   5 456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..++.+|...|++++|+..++++++..|
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  280 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALEEYP  280 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            78889999999999999999999988833

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.56  E-value=2e-06  Score=97.48  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      .....+...|..+...|++++|+..|+++++..|+     ++.++.+++..+...|+ .+|+..+++++++.|+   +..
T Consensus       768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~  838 (899)
T TIGR02917       768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-----NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN---IPA  838 (899)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC---CcH
Confidence            35678889999999999999999999999999999     89999999999999999 8899999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      .+..+|.++..+|++++|+..|+++++..+     .+..+...+...+
T Consensus       839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~  881 (899)
T TIGR02917       839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP-----EAAAIRYHLALAL  881 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Confidence            999999999999999999999999999843     3444444444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.54  E-value=4.2e-07  Score=74.06  Aligned_cols=70  Identities=30%  Similarity=0.339  Sum_probs=61.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      .+.++++++|++|++.+++++.++|+     ++.++.++|.+|.++|+|.+|+.+++++++++|+   +..+..-++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~---~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD-----DPELWLQRARCLFQLGRYEEALEDLERALELSPD---DPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC---cHHHHHHHHh
Confidence            46788999999999999999999999     8999999999999999999999999999999999   7776655443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.53  E-value=6.9e-06  Score=100.33  Aligned_cols=110  Identities=16%  Similarity=0.027  Sum_probs=94.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc---------hHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE---------RIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~---------~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ..+..+..+...|..+++.|++++|+..|+++++.+|+.....         ......+++.++++.|++++|+..++++
T Consensus       298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444577889999999999999999999999999999721110         1113346688999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++++|+   +..+++.+|.++...|++++|+..|+++++..|
T Consensus       378 l~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        378 RQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999999   999999999999999999999999999999944

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.53  E-value=2.8e-07  Score=73.83  Aligned_cols=63  Identities=13%  Similarity=0.028  Sum_probs=58.7

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          457 SNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       457 ~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+|..++..|+|++|+..++++++.+|+   +..+++.+|.++..+|++++|+..|+++++..|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            36799999999999999999999999999   9999999999999999999999999999999553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.52  E-value=1.3e-06  Score=89.45  Aligned_cols=121  Identities=17%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +....+..+|...+..|+|.+|+..+.+|..+.|+     +..+|+-+|.+|.++|++++|-..+.+|+++.|+   .+.
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~  169 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPS  169 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cch
Confidence            34556777999999999999999999999999999     9999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      .+.++|..|+-.|+++.|...+..+...     .+.+..+..-+..+..++...
T Consensus       170 ~~nNlgms~~L~gd~~~A~~lll~a~l~-----~~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         170 IANNLGMSLLLRGDLEDAETLLLPAYLS-----PAADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             hhhhHHHHHHHcCCHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHhhcCCh
Confidence            9999999999999999999999999888     344666777777776665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.51  E-value=1.7e-06  Score=105.48  Aligned_cols=108  Identities=13%  Similarity=0.042  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc-------------------------------------hH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE-------------------------------------RI  453 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~-------------------------------------~a  453 (604)
                      +..+..+...|..++..|++++|++.|+++++++|......                                     ..
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            34566788899999999999999999999999999821100                                     01


Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+.++|.++...|++++|+..++++++++|+   +..+++.+|.+|..+|++++|+..|+++++..|
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            12334566777899999999999999999999   999999999999999999999999999999844

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=6.6e-07  Score=100.61  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..-.+|.-.|..+.++++|+.|...|.+|++++|.     +.++....+..+.++|+.++|+..+++|+.+||.   +
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n  556 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---N  556 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---C
Confidence            3456677888888888899999999999999999998     8888888888999999999999999999999998   8


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                      +-..|.+|.+++.++++++|+..+++.-++-     |++..+...+-+..++
T Consensus       557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-----P~es~v~~llgki~k~  603 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEALQELEELKELV-----PQESSVFALLGKIYKR  603 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHH
Confidence            8888899999999999999998888887773     3444455555444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.49  E-value=4.2e-06  Score=88.35  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..+.+.|++++|++.|.++++.+|..    ....+..++.+|.+.|++++|+..++++++++|+   ... 
T Consensus       213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~-  284 (389)
T PRK11788        213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY----LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG---ADL-  284 (389)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chH-
Confidence            35577889999999999999999999999999871    3567888999999999999999999999999998   654 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..++.++...|++++|+..++++++..|
T Consensus       285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        285 LLALAQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence            48899999999999999999999999843

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.49  E-value=1.6e-06  Score=104.17  Aligned_cols=108  Identities=20%  Similarity=0.091  Sum_probs=93.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      ..+......|++++|+..|.+|++++|+      +.++.++|.++.++|++++|+..++++++++|+   +..+++.+|.
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~  651 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAPS------ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGY  651 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence            4455556679999999999999999996      678999999999999999999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          499 AYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       499 a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      ++..+|++++|+..|+++++..|     .+..+...+.....
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P-----~~~~a~~nLA~al~  688 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLP-----DDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence            99999999999999999999944     44444444444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.47  E-value=1.9e-06  Score=85.15  Aligned_cols=99  Identities=12%  Similarity=0.040  Sum_probs=87.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHcCC
Q 046116          427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY-DMMGL  505 (604)
Q Consensus       427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~-~~LGd  505 (604)
                      .++.++++..|.++++.+|+     ++..|.++|.+|..+|++++|+..+++|++++|+   +...++.+|.++ ...|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQ  123 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCC
Confidence            67789999999999999999     9999999999999999999999999999999999   999999999985 67788


Q ss_pred             --HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116          506 --AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM  538 (604)
Q Consensus       506 --~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl  538 (604)
                        +++|...++++++.+|     ++......+...
T Consensus       124 ~~~~~A~~~l~~al~~dP-----~~~~al~~LA~~  153 (198)
T PRK10370        124 HMTPQTREMIDKALALDA-----NEVTALMLLASD  153 (198)
T ss_pred             CCcHHHHHHHHHHHHhCC-----CChhHHHHHHHH
Confidence              5999999999999944     444444444333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.1e-06  Score=95.70  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      --||-+--+++++.|+..|++|+.++|.     ...+|..+|.=|+.+++-..||..+++|++++|.   ..+|||.+||
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~-----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLGQ  406 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPK-----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLGQ  406 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcc-----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhhH
Confidence            4578888899999999999999999999     9999999999999999999999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          499 AYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       499 a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      +|..++...=|+-.|++|++..|++
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999995543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.46  E-value=1.3e-06  Score=78.89  Aligned_cols=91  Identities=10%  Similarity=-0.039  Sum_probs=80.3

Q ss_pred             HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116          435 KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL  514 (604)
Q Consensus       435 e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~  514 (604)
                      +.|.++++.+|.     +......+|.+++..|++++|+..+++++.++|+   +..+++++|.++..+|++++|+..|+
T Consensus         4 ~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~   75 (135)
T TIGR02552         4 ATLKDLLGLDSE-----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA   75 (135)
T ss_pred             hhHHHHHcCChh-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999     7899999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHhchhhcCCCCCCCHHHHHHHH
Q 046116          515 TFIGSRMKCKHTNRVKIPYYAAVM  538 (604)
Q Consensus       515 kALkl~~~~~d~~~~~i~~~l~rl  538 (604)
                      ++++..     |.+......+...
T Consensus        76 ~~~~~~-----p~~~~~~~~la~~   94 (135)
T TIGR02552        76 LAAALD-----PDDPRPYFHAAEC   94 (135)
T ss_pred             HHHhcC-----CCChHHHHHHHHH
Confidence            999993     3444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.46  E-value=5.4e-06  Score=82.07  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCcccchH------------HHHHHHHHHHHHcCCcHHHHH
Q 046116          415 FMLKQQGNQEFWA--------GYIEEAVKKYSKALDLCPLKMRKERI------------VLYSNRAQCYLMLKKPEAAIS  474 (604)
Q Consensus       415 ~~lk~~GN~lfk~--------GdyeeAIe~YtkALel~P~~~~~~~a------------~l~~NRA~~ylkLgdy~eAI~  474 (604)
                      ..+...|..+++.        |++++|++.|++++...|+......+            ....++|..|++.|++.+|+.
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            4577788888876        88999999999999999983111111            112478999999999999999


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++++++..|+.....++++++|.++..+|++++|...++...+.
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999998774336799999999999999999999977766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.45  E-value=5.5e-07  Score=72.35  Aligned_cols=67  Identities=24%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      +++.|+|++|+..|++++..+|+     +..++.++|.||++.|++++|...+.+++..+|+   ++..+.-+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHhc
Confidence            47889999999999999999999     8999999999999999999999999999999999   7666655554

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.45  E-value=2.7e-06  Score=84.08  Aligned_cols=110  Identities=18%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+++.|+|.+|+..|++.+...|.  .+....+...+|.+|++.|+|.+|+..+++-++..|+...-..|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            5778999999999999999999999999999987  45677888999999999999999999999999999995555679


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGL-----------AKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd-----------~dEAL~d~~kALkl~~~~~  524 (604)
                      +|.+|.+++.+..           ..+|+..|+..++..|++.
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            9999999887643           3589999999999977644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.42  E-value=4.6e-06  Score=97.76  Aligned_cols=101  Identities=9%  Similarity=-0.103  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .......+|..+...|++++|++.+++++...|.     ++.++.++|.++...|++++|+..+++|++++|+   +..+
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l  429 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINL  429 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHH
Confidence            3456678999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++..+|++++|...++.+++..|
T Consensus       430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999944

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.42  E-value=6e-06  Score=84.31  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+-..|..++++|+|++|++.|.+.+...|.  .+....+..++|.+|+++++|++|+..+++.+++.|+.+....+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            3566788999999999999999999999999998  23445556899999999999999999999999999996656789


Q ss_pred             HHHHHHHHHHcCC------------------HHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGL------------------AKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd------------------~dEAL~d~~kALkl~~~~~  524 (604)
                      +|.+|.++..+++                  ..+|+..|+..++..|+.+
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            9999999876651                  3578899999999977654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.42  E-value=4.6e-06  Score=78.92  Aligned_cols=110  Identities=19%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|...++.|+|++|++.+.......|-  .+....+...++.+|++.++|++|+..+++=|+|+|+...-.-|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3578899999999999999999999999999887  44567888899999999999999999999999999994334568


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGL---------------AKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd---------------~dEAL~d~~kALkl~~~~~  524 (604)
                      +|.+|.+++.+..               ..+|+.+|+..++..|++.
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999999999987               8999999999999977654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=2.7e-06  Score=79.20  Aligned_cols=99  Identities=14%  Similarity=0.039  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ........|..++..|+|++|+..|.++++..|+  ......+..++|.+++..|+|++|+..++.+ .-.+-   .+.+
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~---~~~~  120 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF---KALA  120 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch---HHHH
Confidence            3567888999999999999999999999998876  3455778899999999999999999999662 22233   5678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFI  517 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kAL  517 (604)
                      +..+|.++..+|++++|+..|++||
T Consensus       121 ~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  121 AELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            8889999999999999999999885

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.37  E-value=1.2e-06  Score=89.57  Aligned_cols=118  Identities=16%  Similarity=0.024  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|+.+.+.|++++|+..|.+|++++|+     +..+....+..++..|+++++...++...+..|+   ++.
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---~~~  215 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---DPD  215 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---SCC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---HHH
Confidence            45778999999999999999999999999999999     8999999999999999999988888887777777   666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ  542 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq  542 (604)
                      .+..+|.++..+|++++|+..|+++++.     .|++..+...+...+...
T Consensus       216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~-----~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  216 LWDALAAAYLQLGRYEEALEYLEKALKL-----NPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             HCHHHHHHHHHHT-HHHHHHHHHHHHHH-----STT-HHHHHHHHHHHT--
T ss_pred             HHHHHHHHhccccccccccccccccccc-----cccccccccccccccccc
Confidence            7888899999999999999999999998     445555665555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.37  E-value=2.9e-06  Score=91.02  Aligned_cols=85  Identities=16%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+..+|..++..|+|++|+..+++||+++|.     .+.+|+++|.+|+.+|+|++|+.+++++++++|+   +..
T Consensus        34 ~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~---~~~  105 (356)
T PLN03088         34 NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-----LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG---DSR  105 (356)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHH
Confidence            35678899999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcC
Q 046116          492 SLWRRSQAYDMMG  504 (604)
Q Consensus       492 A~~rrG~a~~~LG  504 (604)
                      +...++.+...+.
T Consensus       106 ~~~~l~~~~~kl~  118 (356)
T PLN03088        106 FTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888877663

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.36  E-value=5.7e-06  Score=96.97  Aligned_cols=101  Identities=11%  Similarity=-0.013  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+...|++++|+..|.++|+++|.     ++.++.+++.++...|++++|+..++++++.+|+   +.. 
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~---~~~-  118 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD---KAN-  118 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH-
Confidence            4567889999999999999999999999999999     7888999999999999999999999999999999   888 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.++...|++++|+..|+++++..|+
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.30  E-value=2.2e-06  Score=94.00  Aligned_cols=74  Identities=20%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV---LYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~---l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      ...++..+..+.++|+.+++.|+|++|+..|++||+++|+     ++.   +|+|+|.||.++|++++|+.++++|+++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-----~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-----PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3467889999999999999999999999999999999999     664   59999999999999999999999999985


Q ss_pred             CC
Q 046116          484 KT  485 (604)
Q Consensus       484 Pd  485 (604)
                      +.
T Consensus       143 n~  144 (453)
T PLN03098        143 NL  144 (453)
T ss_pred             ch
Confidence            43

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.28  E-value=2.7e-06  Score=93.24  Aligned_cols=69  Identities=10%  Similarity=-0.021  Sum_probs=65.8

Q ss_pred             hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          443 LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS---LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       443 l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA---~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+|+     ++..|+|+|.+|+++|+|++|+..|++||+++|+   +..+   ||++|.+|..+|++++|+.++++|+++
T Consensus        70 ~dP~-----~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVK-----TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677     9999999999999999999999999999999999   8865   999999999999999999999999996

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.4e-06  Score=93.73  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=103.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRK--ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~--~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP  484 (604)
                      ....+...-.+.+.|-..|..+.|.+|+..|..+++.-+....+  -....+.|+|.+|.+++.|++||..+++||.+.|
T Consensus       407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            33444567788999999999999999999999999654331111  2567899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      .   ++.+|--.|.+|..+|+++.|+..|.++|-+.|     .+.-+...+...+.
T Consensus       487 k---~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-----~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  487 K---DASTHASIGYIYHLLGNLDKAIDHFHKALALKP-----DNIFISELLKLAIE  534 (611)
T ss_pred             C---chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHH
Confidence            9   999999999999999999999999999999944     44445555554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=2.1e-06  Score=94.64  Aligned_cols=105  Identities=24%  Similarity=0.272  Sum_probs=97.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---KKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---gdy~eAI~D~~rALeLdPd  485 (604)
                      +.+..++..+.+||..|..+....||..|.+++...|.     ...+|.|||.++++.   |+--.|+.||..|+++||.
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~-----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s  443 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD-----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS  443 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc-----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence            44557899999999999999999999999999999999     899999999999987   4778899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                         ..||+|+++.++..++++.+|+.+...+.-..|
T Consensus       444 ---~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  444 ---IQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             ---HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence               999999999999999999999998887777655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.23  E-value=4e-06  Score=68.27  Aligned_cols=59  Identities=24%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          460 AQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       460 A~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+|+..++|++|+..+++++.++|+   ++.+++.+|.++..+|++++|+.+|+++++..|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            56899999999999999999999999   999999999999999999999999999999955

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.6e-06  Score=92.10  Aligned_cols=124  Identities=27%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-----------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP---L-----------KMRKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P---~-----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      .....+..++.||..|++++|..|...|.+++..-.   .           ........++.|.+.|-++++.+..|+..
T Consensus       218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~  297 (372)
T KOG0546|consen  218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR  297 (372)
T ss_pred             hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence            344577889999999999999999999999998632   1           12344667888999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                      +..+++.+++   .++||||+++++..+.++++|++++..+....|     .+..+...+...-++
T Consensus       298 ~~~~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p-----~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  298 TNEALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP-----NDKAIEEELENVRQK  355 (372)
T ss_pred             cccccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc-----chHHHHHHHHHhhhH
Confidence            9999999999   999999999999999999999999999998843     344455554444333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.19  E-value=2.9e-05  Score=71.52  Aligned_cols=103  Identities=19%  Similarity=0.024  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+.+.|..+-..|+.++|+..|.+|++..+.  ......++.++|.++..+|++++|+..+++++.-.|+...+.....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            35678889999999999999999999997655  2346778999999999999999999999999998777444666677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      -.+.++..+|+++||+..+..++--
T Consensus        80 f~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   80 FLALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7899999999999999998887754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.19  E-value=1.1e-05  Score=93.38  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+.++-+.+.+.++...|+|.+|+..|+.++...+.+    +..+|.+.|.||..+|.|++|+..+.++|.++|+   +.
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~----~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~---~~  483 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ----NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD---NL  483 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---ch
Confidence            3467889999999999999999999999999998885    6899999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+...++.++..+|+.++|++.+..-..-
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~  512 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQIINP  512 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence            99999999999999999999988776644

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.18  E-value=3.1e-06  Score=70.04  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLS---KTMS-SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd---Pd~~-~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      .+.++.|+|.+|..+|+|++|+..+++|+++.   ++.. ....+++++|.++..+|++++|+..++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            56777788888888888888888888877652   1100 135677778888888888888888888877763

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.16  E-value=1.7e-05  Score=82.82  Aligned_cols=102  Identities=17%  Similarity=0.034  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCCHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSHSK  491 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n~K  491 (604)
                      ....+...|..+...|++++|+..|.+++++.|+     ++.++.++|.+|...|++++|+..+.+++.+.|.. .....
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~  187 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH  187 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence            4566778899999999999999999999999999     78999999999999999999999999999998751 11245


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++.+|.++...|++++|+..|++++..
T Consensus       188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         188 NWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            6788999999999999999999999766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=1.5e-05  Score=83.12  Aligned_cols=106  Identities=20%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .++-.+..+..+-+++-+|.+.|.|+.||+....||.++|.     +..+|..++.+|+.+|+|.+|+..|++||+++|+
T Consensus       107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence            34445567889999999999999999999999999999999     9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhc
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAK---ESLMDALTFIGS  519 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~d---EAL~d~~kALkl  519 (604)
                         |....-.+..+-..++...   .+...+..+..+
T Consensus       182 ---Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i  215 (304)
T KOG0553|consen  182 ---NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI  215 (304)
T ss_pred             ---cHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence               7766666666666666655   444444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.14  E-value=3.2e-05  Score=79.88  Aligned_cols=109  Identities=12%  Similarity=0.021  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+.+.+..+++.|+|.+|...|..-|...|+  ....+.+++-++.+++.+|+|++|...+..+++-.|+.+.-++++
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~--s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN--STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            345889999999999999999999999999998  445677888899999999999999999999999999865567889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      +.+|.+...+|+.++|...|+++++..|+..
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            9999999999999999999999999977543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.13  E-value=2.2e-05  Score=89.84  Aligned_cols=101  Identities=21%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAIS--DTTRALSLSKTMSS  488 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~--D~~rALeLdPd~~~  488 (604)
                      +-.+..+...|..+..+|++.+|.+.|..|+.++|+     .+....-+|.++++.|+..-|..  ....|+++||.   
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-----hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---  752 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-----HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---  752 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---
Confidence            345677899999999999999999999999999999     89999999999999999888888  99999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      |.+|||.+|.++..+|+.++|...|+.|+.+
T Consensus       753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.12  E-value=4.5e-05  Score=88.56  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---------------------------
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---------------------------  466 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---------------------------  466 (604)
                      +..+..++|.+|-.|++++|++...++|..+|.     .+..|+.+|.+|..+                           
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            555566666666666666666666666666665     455555555555555                           


Q ss_pred             -------CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          467 -------KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       467 -------gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                             |++..|+-.+++||+++|.   +.+.+|+++..|.++|++..|...|.+.+.++|
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence                   5555566666666666666   666666666666666666666666666666633

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.11  E-value=1.6e-05  Score=65.76  Aligned_cols=72  Identities=22%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      +..+..+.+.|..++..|+|++|+..|.+++++   .++ .....+.++.|+|.||..+|++++|+..+++|+++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            346788999999999999999999999999987   222 233468899999999999999999999999999863

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.08  E-value=8.9e-05  Score=83.28  Aligned_cols=108  Identities=19%  Similarity=0.050  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK-----  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP-----  484 (604)
                      .+..+.+.|..+++.|+|++|..++.+|+++.-.   ...+.-+..++|.+..+..++++++|+..+.+++++--     
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~  361 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE  361 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence            3333444444444444444444444444443110   11122334444444444444444444444444443311     


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ++.--++.+-++|.+|+++|+|+||...|++|+...
T Consensus       362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            100034556677777777777777777777777763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.07  E-value=7.1e-05  Score=82.36  Aligned_cols=102  Identities=26%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .++.+-.+-..|..+++.++..+|++.+.+++.++|.     ...+..|+|++|++.|++.+||..++..+.-+|+   +
T Consensus       336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---d  407 (484)
T COG4783         336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---D  407 (484)
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---C
Confidence            3445667778899999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +..|..+|++|..+|+..+|...+-+.+.+
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            999999999999999999999999888888

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.07  E-value=8.9e-06  Score=83.15  Aligned_cols=106  Identities=19%  Similarity=0.112  Sum_probs=74.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .++..++........+..+...|++++|.+.+.......|.     ++.++...|.+|..+|++++|+..++++++.+|+
T Consensus       172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-----DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----HHHHHHHHHHHhcccccccccccccccccccccc
Confidence            34445556677888899999999999988888888888777     7788899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                         ++..+...|.++...|++++|...++++++.
T Consensus       247 ---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  247 ---DPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             ----HHHHHHHHHHHT------------------
T ss_pred             ---ccccccccccccccccccccccccccccccc
Confidence               9999999999999999999999999998875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=8.8e-05  Score=80.21  Aligned_cols=100  Identities=16%  Similarity=0.076  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+.+.+-.+.+.++|.+|+...+++|+++|.     ++.+++.||.+++.+|+|+.|+.|+++|++++|+   |-.+.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-----N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~  328 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-----NVKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAAR  328 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHH
Confidence            446778888999999999999999999999999     9999999999999999999999999999999999   98888


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKES-LMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEA-L~d~~kALkl~~  521 (604)
                      ..+..+..+..++.+. .+.|...+....
T Consensus       329 ~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  329 AELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8888888888877666 566777777644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.00037  Score=73.79  Aligned_cols=103  Identities=17%  Similarity=0.003  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      -.++...-+.|-+..+|++||+.-.+...+.|.+....-+.+|+.+|+.+....+++.|+....+|++-||+   .+.|-
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAs  217 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRAS  217 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehh
Confidence            445666677777778888888888888888877667777888888888888888888888888888888888   88888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .-+|.++...|+|..|++.++.+++.
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHh
Confidence            88888888888888888888888877

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=0.00016  Score=79.77  Aligned_cols=122  Identities=16%  Similarity=0.049  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      .........+...+..|++++|...++..|...|+     ++-++..++.++++.++..+|++-+++++.++|+   ..-
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~  375 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-----NPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPL  375 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccH
Confidence            34567788899999999999999999999999999     9999999999999999999999999999999999   888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNAT  546 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~  546 (604)
                      ..+.+|++|.+.|++.+|+..++..+..     +|.++..-.++.+...++....
T Consensus       376 l~~~~a~all~~g~~~eai~~L~~~~~~-----~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         376 LQLNLAQALLKGGKPQEAIRILNRYLFN-----DPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHhCchH
Confidence            8999999999999999999999999998     4556667778877777666553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.01  E-value=5.8e-05  Score=72.66  Aligned_cols=86  Identities=17%  Similarity=0.079  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+.-|.+.|-.+-.+|+|++||..|.+|+.++|+     ++..+.|.|.||+++|+.+.|.+.++.|+.+... .+.
T Consensus        65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-----dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~-~~~  138 (157)
T PRK15363         65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-----APQAPWAAAECYLACDNVCYAIKALKAVVRICGE-VSE  138 (157)
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-Chh
Confidence            3446889999999999999999999999999999999     9999999999999999999999999999998843 123


Q ss_pred             HHHHHHHHHHHH
Q 046116          490 SKSLWRRSQAYD  501 (604)
Q Consensus       490 ~KA~~rrG~a~~  501 (604)
                      ...+..+++.+.
T Consensus       139 ~~~l~~~A~~~L  150 (157)
T PRK15363        139 HQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHHHHHH
Confidence            345555555544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.00  E-value=0.00022  Score=74.45  Aligned_cols=67  Identities=16%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+.++|.++...|++++|+..++++++++|+   +..++..+|.+++..|++++|+..++++++..+
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            4556678899999999999999999999999999   999999999999999999999999999999854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=3.4e-05  Score=88.00  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+.+....|+..+.+++|++|..++..+++++|-     ....|++++.|.++++++..|..+|.+++.++|+   |..+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~ea  555 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEA  555 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhh
Confidence            3445566677778889999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      |.+++.+|..+|+-.+|...+++|++..
T Consensus       556 WnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  556 WNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999984

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=3.1e-05  Score=78.09  Aligned_cols=103  Identities=19%  Similarity=0.079  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+.-+.++|+.+=..|-..-|--.+++++.+.|+     .+.+++.+|.-+...|+|+.|.+.++.++++||.   +--
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Y  134 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNY  134 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chH
Confidence            46888999999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |+.+||.+++--|+|.-|.+|+.+....+|+
T Consensus       135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         135 AHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             HHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            9999999999999999999999999888554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.98  E-value=5.7e-05  Score=88.35  Aligned_cols=101  Identities=14%  Similarity=0.050  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA  492 (604)
                      +..+...+|.+|-+|+|+.+...+..||...-.  ..+.+..++++|.+|..+|+|++|..+|-++++.+|+   + .-+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d---~~~l~  344 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTEN--KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND---NFVLP  344 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC---Ccccc
Confidence            344444444444445555554444444444321  1123333444455555555555555555555544444   3 444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++.+|+.+...|++++|...|.++++.
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~  371 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQ  371 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHh
Confidence            444455555555555555554444444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.98  E-value=1.4e-05  Score=64.16  Aligned_cols=56  Identities=16%  Similarity=0.045  Sum_probs=51.9

Q ss_pred             HHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       463 ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +++.|+|++|+..+++++..+|+   +..+++.+|.+|...|++++|...+.++++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            36789999999999999999999   999999999999999999999999999999944

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.001  Score=70.59  Aligned_cols=120  Identities=15%  Similarity=0.030  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      ....|.-+.+.+..+....+++.|+....+|++.+|.     .+.+-..+|.+++..|+|.+|++.+.++++-||+   +
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---y  247 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-----CVRASIILGRVELAKGDYQKAVEALERVLEQNPE---Y  247 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH---H
Confidence            3456778889999999999999999999999999999     6777777899999999999999999999999999   5


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          490 -SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       490 -~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                       +...-.+..||.++|+.++.+.-++++.+..++      ....-.+.+++..+.
T Consensus       248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g------~~~~l~l~~lie~~~  296 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG------ADAELMLADLIELQE  296 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC------ccHHHHHHHHHHHhh
Confidence             567888999999999999999999999988443      334445555544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=5.5e-05  Score=84.52  Aligned_cols=117  Identities=12%  Similarity=0.030  Sum_probs=104.6

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Q 046116          404 DEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK------------------------------------  447 (604)
Q Consensus       404 ~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~------------------------------------  447 (604)
                      +....++++.++.|...|......++=..||..+.++++++|++                                    
T Consensus       309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~  388 (579)
T KOG1125|consen  309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH  388 (579)
T ss_pred             HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence            34567788899999999999999999999999999999999971                                    


Q ss_pred             ------------------------------------cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          448 ------------------------------------MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       448 ------------------------------------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                                                          ..+.++.++.-+|..|...|+|+.|+..++.||..+|+   +..
T Consensus       389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---d~~  465 (579)
T KOG1125|consen  389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYL  465 (579)
T ss_pred             ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---hHH
Confidence                                                11246778888999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      .|.|+|-++..-.+..||+..|++|+++.|+-
T Consensus       466 lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  466 LWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            99999999999999999999999999995543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.93  E-value=0.00011  Score=58.10  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.++|.++...|++++|+..++++++..|+   +..+++.+|.++...|++++|+..|+++++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5788999999999999999999999999999   889999999999999999999999999999843

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=4.4e-05  Score=83.27  Aligned_cols=119  Identities=14%  Similarity=0.095  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+.++||..|.+|+++.|.+.|.+||.-+..     -..+++|.+..+-++|+.++|+..+-+.-.+--+   +.+.
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~il~n---n~ev  560 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEV  560 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHH
Confidence            5678899999999999999999999999999888     7889999999999999999999988877666666   7899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      ++.++.+|..+.+..+|++.+-.+..+.|     .++.+...+..+....-.
T Consensus       561 l~qianiye~led~aqaie~~~q~~slip-----~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIELLMQANSLIP-----NDPAILSKLADLYDQEGD  607 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhcccCC-----CCHHHHHHHHHHhhcccc
Confidence            99999999999999999999988888843     445566666655544333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.88  E-value=0.0015  Score=73.69  Aligned_cols=128  Identities=19%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      .++.+..+.+.+..+..+++|++|+.+|.+++++.   |.+.+...+..+.|+|.+|+++|+|++|...+++||.+....
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~  400 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL  400 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence            34577889999999999999999999999999973   333334578899999999999999999999999999875220


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116          487 -----SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM  538 (604)
Q Consensus       487 -----~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl  538 (604)
                           ....++++++|..+..++++.+|-.-|.+++... +.-.|..+.+......+
T Consensus       401 ~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL  456 (508)
T KOG1840|consen  401 LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNL  456 (508)
T ss_pred             ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHH
Confidence                 1147899999999999999999999999999886 44444555555554444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.86  E-value=0.00013  Score=86.38  Aligned_cols=93  Identities=15%  Similarity=0.069  Sum_probs=56.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      .....+...|++++|+..+.+++.-.|.     ....+...|..|..+|+|++|+..++++++.+|+   ++.+++.++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~-----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~  144 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNI-----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIM  144 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Confidence            4444445556666666666666622222     2333333355666677777777777777777777   6666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 046116          499 AYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       499 a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++...++.++|+..++++.+.
T Consensus       145 ~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574        145 TQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             HHhhcCCHHHHHHHHHHhccc
Confidence            677777777777776666666

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.80  E-value=0.00014  Score=79.55  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .....+..++..++-.+|+....++|...|.     ++.++..-|..+++.++++.|+..+++|+++.|+   ..++|+.
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-----d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~  273 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-----DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQ  273 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHH
Confidence            3445677788888999999999999999999     8999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 046116          496 RSQAYDMMGLAKESLMDALTFI  517 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kAL  517 (604)
                      ++++|..+|++++|+..+..+-
T Consensus       274 La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  274 LAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999998765443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.80  E-value=0.00019  Score=68.62  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             HHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          441 LDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       441 Lel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ..+.|...+...+..++++|..+...|++++|+..+++++++.|+......+++.+|.++..+|++++|+..|+++++..
T Consensus        23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  102 (172)
T PRK02603         23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN  102 (172)
T ss_pred             HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33333333445788999999999999999999999999999987622235799999999999999999999999999984


Q ss_pred             h
Q 046116          521 M  521 (604)
Q Consensus       521 ~  521 (604)
                      +
T Consensus       103 p  103 (172)
T PRK02603        103 P  103 (172)
T ss_pred             c
Confidence            3

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.79  E-value=0.00013  Score=69.30  Aligned_cols=97  Identities=11%  Similarity=0.019  Sum_probs=80.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116          421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY  500 (604)
Q Consensus       421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~  500 (604)
                      .+.+|-.+.|..+-..+.+.+...+.   ...+..+.+.|.++..+|+|++|+..+++|+.+.|+......+++++|.++
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~   82 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSG---EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH   82 (168)
T ss_pred             ccccccccccccchhhhhHhccCCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence            45667777788888888666665554   236888999999999999999999999999999876222345899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhch
Q 046116          501 DMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       501 ~~LGd~dEAL~d~~kALkl~  520 (604)
                      ..+|++++|+..|+++++..
T Consensus        83 ~~~g~~~eA~~~~~~Al~~~  102 (168)
T CHL00033         83 TSNGEHTKALEYYFQALERN  102 (168)
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999983

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.75  E-value=0.00059  Score=63.52  Aligned_cols=101  Identities=15%  Similarity=0.003  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..........+..++...+...+++.+.-.|+  ..........+|.+++..|++++|+..++.++...|+......+
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            4566667777777899999999999999999998  22336778889999999999999999999999988773223568


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALT  515 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~k  515 (604)
                      .+++|.+++..|++++|+..+..
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999855

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=3.1e-05  Score=84.39  Aligned_cols=99  Identities=18%  Similarity=0.136  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      -.+.||.+|++.+|..||..|+.||+.-|.-.+.....++.|.+..+.+.|+|++||..++..++..|+    .++-+++
T Consensus       240 kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn----~~a~~nl  315 (840)
T KOG2003|consen  240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN----FIAALNL  315 (840)
T ss_pred             eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc----HHhhhhh
Confidence            347899999999999999999999999999777789999999999999999999999999999999997    6777889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q 046116          497 SQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       497 G~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      -.|++..|+-+.-.+.|++.+..
T Consensus       316 ~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  316 IICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             hhhheecCcHHHHHHHHHHHhcC
Confidence            99999999999999999999987

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.71  E-value=0.00098  Score=61.66  Aligned_cols=107  Identities=21%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------KMRKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      ..+.+...|......++.+.++..+.+++.+...                 ..+.....+...++..+...|++++|+..
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            4556677788888899999999999999998422                 12233556777788899999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +++++.++|.   +-.+|..+-.+|..+|+..+|+..|+++-+...+
T Consensus        85 ~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~  128 (146)
T PF03704_consen   85 LQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE  128 (146)
T ss_dssp             HHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            9999999999   9999999999999999999999999998877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.71  E-value=0.00026  Score=61.41  Aligned_cols=74  Identities=12%  Similarity=0.024  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .......|..+++.|+|++|+..|.+++...|+  ....+.++.++|.++.++|++++|+..++++++..|+   +..+
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~  112 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG---SSAA  112 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC---ChhH
Confidence            456788999999999999999999999999987  2224678999999999999999999999999999999   6544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.70  E-value=0.00043  Score=82.13  Aligned_cols=100  Identities=10%  Similarity=-0.066  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+...|..+...|+|++|++.|+++++.+|+     ++.++.-++..|...+++++|+..+++++..+|+   +... 
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---~~~~-  172 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-----NPDLISGMIMTQADAGRGGVVLKQATELAERDPT---VQNY-  172 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---hHHH-
Confidence            566777788999999999999999999999999     8888888899999999999999999999999999   5554 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..++.++..++++.+|+..|+++++..|+
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence            44566666688887899999999999554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.70  E-value=0.00019  Score=82.67  Aligned_cols=124  Identities=24%  Similarity=0.272  Sum_probs=105.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhc
Q 046116          405 EEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--KKPEAAISDTTRALSL  482 (604)
Q Consensus       405 edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--gdy~eAI~D~~rALeL  482 (604)
                      +++......+..++.+||.+|++++|.+|...|..++.+.|. .+-..+.++.|++.||+.+  ++|..++.+|+-|+..
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~-~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~  122 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK-DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES  122 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc-cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence            345556667899999999999999999999999999999995 5666899999999999865  5999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116          483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV  537 (604)
Q Consensus       483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r  537 (604)
                      .|.   ..+++++|+.+|..++.++-|++|..-..+.     +|.+......+.+
T Consensus       123 ~p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~-----~p~~~~~~eif~e  169 (748)
T KOG4151|consen  123 QPR---ISKALLKRARKYEALNKLDLAVRDLRIVEKM-----DPSNVSASEIFEE  169 (748)
T ss_pred             cch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcC-----CCCcchHHHHHHH
Confidence            999   9999999999999999999999997666666     4455445543333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.69  E-value=0.00027  Score=72.73  Aligned_cols=98  Identities=13%  Similarity=0.035  Sum_probs=90.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS  497 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG  497 (604)
                      .+..+.++..|+-+.+....+++....|.     +..++.-.+...+..|+|..|+..+++|..++|+   +.++|.-+|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---d~~~~~~lg  141 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---DWEAWNLLG  141 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcc-----cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---ChhhhhHHH
Confidence            77888899999988899888998888888     7778877899999999999999999999999999   999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          498 QAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       498 ~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      .+|.++|++++|...|.+++++.+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNE  167 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCC
Confidence            99999999999999999999996653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.68  E-value=0.00017  Score=70.77  Aligned_cols=84  Identities=24%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116          430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK----------PEAAISDTTRALSLSKTMSSHSKSLWRRSQA  499 (604)
Q Consensus       430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd----------y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a  499 (604)
                      |+.|.+.|......+|.     ++..++|-|.+++.+.+          +++||+-+++||.++|+   ...|+|.+|.+
T Consensus         7 FE~ark~aea~y~~nP~-----DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA   78 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL-----DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA   78 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH-----hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence            78899999999999999     89999999999988854          56789999999999999   99999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHhchh
Q 046116          500 YDMMGL-----------AKESLMDALTFIGSRM  521 (604)
Q Consensus       500 ~~~LGd-----------~dEAL~d~~kALkl~~  521 (604)
                      |..++.           |+.|...|++|....|
T Consensus        79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P  111 (186)
T PF06552_consen   79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP  111 (186)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            999876           5666666677766633

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00028  Score=70.60  Aligned_cols=68  Identities=22%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+.-+-++|-++.+.++++.||...++||++.|.     +-.++..||.+|-++..|++|+.||++.++++|.
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-----y~kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-----YEKALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999999999999     8899999999999999999999999999999999

>PRK11906 transcriptional regulator; Provisional

Probab=97.62  E-value=0.00073  Score=74.67  Aligned_cols=87  Identities=7%  Similarity=-0.130  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 046116          427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLA  506 (604)
Q Consensus       427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~  506 (604)
                      ..+-.+|.+.-.+|++++|.     ++.++..+|.++...++++.|+..+++|+.++|+   .+.++|..|.++...|+.
T Consensus       317 ~~~~~~a~~~A~rAveld~~-----Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~  388 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTV-----DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKI  388 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCH
Confidence            34567899999999999999     9999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHhchh
Q 046116          507 KESLMDALTFIGSRM  521 (604)
Q Consensus       507 dEAL~d~~kALkl~~  521 (604)
                      ++|+..+++|+++.|
T Consensus       389 ~~a~~~i~~alrLsP  403 (458)
T PRK11906        389 EEARICIDKSLQLEP  403 (458)
T ss_pred             HHHHHHHHHHhccCc
Confidence            999999999999954

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.62  E-value=0.0007  Score=76.56  Aligned_cols=84  Identities=14%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 046116          430 IEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK  507 (604)
Q Consensus       430 yeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d  507 (604)
                      ...|.+...+++.+  +|.     .+.+|.-+|..+...|++++|...+++|+.++|+    ..+|..+|.++...|+++
T Consensus       400 l~~a~~~~~~a~al~~~~~-----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~  470 (517)
T PRK10153        400 LAALSTELDNIVALPELNV-----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNR  470 (517)
T ss_pred             HHHHHHHHHHhhhcccCcC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHH
Confidence            45556666666664  555     6788888899999999999999999999999986    579999999999999999


Q ss_pred             HHHHHHHHHHhchhh
Q 046116          508 ESLMDALTFIGSRMK  522 (604)
Q Consensus       508 EAL~d~~kALkl~~~  522 (604)
                      +|+..|++|+.+.|.
T Consensus       471 eA~~~~~~A~~L~P~  485 (517)
T PRK10153        471 LAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.61  E-value=0.00058  Score=81.17  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=109.1

Q ss_pred             hhccccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046116          366 YHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP  445 (604)
Q Consensus       366 y~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P  445 (604)
                      |-..+.+++.+...+....|-...... ...+....+..+.++..+.....+.-.|-.+++.+++..|...  .++...+
T Consensus        18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         18 WTRADANNYSLSKFKELDDLIDAYKSE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             hhhcccccCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            334444555555555544444433111 1223333344455666677788888888888888888877776  6666655


Q ss_pred             CCcc--------------cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 046116          446 LKMR--------------KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLM  511 (604)
Q Consensus       446 ~~~~--------------~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~  511 (604)
                      .+.+              ..+..++..+|.||-++|++++|+..++++|++||+   |+.++.+.|..|... +.++|+.
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh-hHHHHHH
Confidence            5110              002368889999999999999999999999999999   999999999999999 9999999


Q ss_pred             HHHHHHhchhhc
Q 046116          512 DALTFIGSRMKC  523 (604)
Q Consensus       512 d~~kALkl~~~~  523 (604)
                      .+.+|+....+.
T Consensus       171 m~~KAV~~~i~~  182 (906)
T PRK14720        171 YLKKAIYRFIKK  182 (906)
T ss_pred             HHHHHHHHHHhh
Confidence            999999885543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.60  E-value=0.0034  Score=68.30  Aligned_cols=103  Identities=12%  Similarity=-0.055  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------cccchHHHHHHHHHHHHHc
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--------------------------MRKERIVLYSNRAQCYLML  466 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--------------------------~~~~~a~l~~NRA~~ylkL  466 (604)
                      .+......+..+...|++++|.....++++..|+.                          ..+.++.++...|..++..
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            44555566667777777777777777777643330                          0011444455555555555


Q ss_pred             CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          467 KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       467 gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++|++|.+.++++++++|+    ...+..++.++..+|+.++|...|++++.+
T Consensus       342 ~~~~~A~~~le~al~~~P~----~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        342 GEWQEASLAFRAALKQRPD----AYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5555555555555555554    233344555555555555555555555444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.59  E-value=0.0014  Score=77.02  Aligned_cols=102  Identities=13%  Similarity=0.021  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      -.++.+...|..++.+|+|++|..+|.+++..+|+.    ..-.+.-+|+.|++.|+++.|+..+.++++..|+   +.+
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~e  377 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYE  377 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---hHH
Confidence            457789999999999999999999999999999992    3677888999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcC----CHHHHHHHHHHHHhch
Q 046116          492 SLWRRSQAYDMMG----LAKESLMDALTFIGSR  520 (604)
Q Consensus       492 A~~rrG~a~~~LG----d~dEAL~d~~kALkl~  520 (604)
                      ...-+|..|...+    .-+.|.....++++..
T Consensus       378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            9999999999887    5677777777777774

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.56  E-value=0.0011  Score=61.34  Aligned_cols=104  Identities=17%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLC---PL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-------  481 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-------  481 (604)
                      .....|...++.|-|++|...|.+|++..   |.    ...-.++.+|.-++.++..+|+|++++....+||.       
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE   90 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE   90 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence            34456677788999999999999999984   32    11223678999999999999999999999999984       


Q ss_pred             cCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          482 LSKT-MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       482 LdPd-~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      |+.+ ++.+..+-+.||.++..+|+.+||+..|+++-+.
T Consensus        91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            5555 2446778899999999999999999999999887

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.56  E-value=0.00017  Score=60.85  Aligned_cols=61  Identities=31%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ....+...|..+|+.|+|++|+..+++ +..+|.     ....+...|.|++++|+|++|+..+.+|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-----~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-----NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-----HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            355677799999999999999999999 888888     7788888899999999999999998875

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.00076  Score=77.37  Aligned_cols=105  Identities=19%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      -....|...|..+.+.++++.|...|+..+.++|+     +...|+|.+.+|+++++-.+|-...++|++-+-+   |.+
T Consensus       517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~  588 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQ  588 (777)
T ss_pred             cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCe
Confidence            35678999999999999999999999999999999     9999999999999999999999999999999988   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .+-+--.+....|.+++|+..|.+-++...+..
T Consensus       589 iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  589 IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999998854433

>TIGR00540 hemY_coli hemY protein

Probab=97.54  E-value=0.0022  Score=69.82  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .....+...|..+.++|+++.|...|.++.+..|+     .. .+...++..++..|++++|+..+++.++..|+   ++
T Consensus       116 ~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~  187 (409)
T TIGR00540       116 EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-----DNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HK  187 (409)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CH
Confidence            34455677888899999999999999999998888     42 45666799999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++.-.+.++...|++++|+..+.+.++.
T Consensus       188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       188 EVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            99999999999999999999999988887

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.49  E-value=0.00015  Score=51.01  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      +.+|+++|.+|..+|++++|+.++++||+++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            356777888888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.48  E-value=0.0035  Score=70.95  Aligned_cols=64  Identities=17%  Similarity=0.044  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +++.+|+.|-.+|++++|+...++||+..|+   .++.|+.+|.++-+.|++.+|...+..|-+++.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~  259 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDL  259 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence            4577899999999999999999999999999   999999999999999999999999999999944

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0038  Score=70.13  Aligned_cols=73  Identities=25%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      .....+.+.|-.+-+.++|++||..|++||.++|.     ++..|.-.|.+|..+|+++.||+.+.+||-++|+   +.-
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-----~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~---n~~  524 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-----DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD---NIF  524 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-----chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc---cHH
Confidence            45667899999999999999999999999999999     9999999999999999999999999999999999   754


Q ss_pred             H
Q 046116          492 S  492 (604)
Q Consensus       492 A  492 (604)
                      +
T Consensus       525 ~  525 (611)
T KOG1173|consen  525 I  525 (611)
T ss_pred             H
Confidence            4

>TIGR00540 hemY_coli hemY protein

Probab=97.43  E-value=0.0013  Score=71.54  Aligned_cols=94  Identities=10%  Similarity=0.018  Sum_probs=55.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH----H
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW----R  495 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~----r  495 (604)
                      .+..+...|+++.|...+++.++..|+     ++.++...+.+|...|+|++|+..+.+.++..+.   ....+.    .
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~---~~~~~~~l~~~  230 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF---DDEEFADLEQK  230 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence            355666667777777777777777776     6666666777777777777777777777665433   222221    2


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+...+..+++...+..+.+..|
T Consensus       231 a~~~~l~~~~~~~~~~~L~~~~~~~p  256 (409)
T TIGR00540       231 AEIGLLDEAMADEGIDGLLNWWKNQP  256 (409)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence            22222334444445556666666644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.43  E-value=0.009  Score=66.83  Aligned_cols=128  Identities=20%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +-+-.+..+|..+..+|+.++|++.|+++++.... .++....++..++.||+-+.+|++|..++.+.++.+.    +.+
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~----WSk  339 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK----WSK  339 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----cHH
Confidence            35778899999999999999999999999965443 6677889999999999999999999999999999654    567


Q ss_pred             HHHH--HHHHHHHcCCH-------HHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          492 SLWR--RSQAYDMMGLA-------KESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       492 A~~r--rG~a~~~LGd~-------dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      ++|.  .|.|+..+|+.       ++|...|.++-.+..+.. .+..++...+.|-.++-...
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~-gk~lp~E~Fv~RK~~~~~~~  401 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKA-GKSLPLEKFVIRKAQKYEKQ  401 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHHHhc
Confidence            6554  78999999999       888888888888755433 25677888887777765555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.41  E-value=0.0043  Score=64.37  Aligned_cols=151  Identities=14%  Similarity=0.023  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---
Q 046116          412 LSVFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---  486 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---  486 (604)
                      ..+..+.+.|..+... |++++|++.|.+|+++... ........++.+.|.++.++|+|++|+..++++....-+.   
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            3578889999999998 9999999999999998432 1233457788899999999999999999999998754321   


Q ss_pred             CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc-CccchHHhhhhcCCchhHH
Q 046116          487 SSHSK-SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA-TWPFIHAKSKMCKPSIIEE  564 (604)
Q Consensus       487 ~~n~K-A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~-~~l~~ea~rKm~k~~~~e~  564 (604)
                      +.+.+ .+++.+.|++..||+..|...+.+....+|.-.   ...--..+..++.-.... ...+.++....-..+....
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~---~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA---SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST---TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            11344 457888899999999999999999998865433   233344566666655553 3344444444444444333


Q ss_pred             H
Q 046116          565 K  565 (604)
Q Consensus       565 ~  565 (604)
                      .
T Consensus       269 w  269 (282)
T PF14938_consen  269 W  269 (282)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0027  Score=65.54  Aligned_cols=103  Identities=15%  Similarity=-0.044  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +...-..|.+--.+-.+|+--+||+...+-++..|.     +..+|..+|..|+.+|+|++|.-.+.+.+-++|.   ++
T Consensus       117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-----D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---n~  188 (289)
T KOG3060|consen  117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-----DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---NP  188 (289)
T ss_pred             cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---cH
Confidence            334445555556666677777999999999999998     9999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGL---AKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd---~dEAL~d~~kALkl~~  521 (604)
                      --+-|+|.+++-+|-   +.-|.+.|.+++++++
T Consensus       189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            999999999998875   5678999999999955

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.40  E-value=0.0013  Score=78.32  Aligned_cols=117  Identities=10%  Similarity=-0.084  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS----  487 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~----  487 (604)
                      .....+....+.+...+++++|+...+.+++..|+     ...+|+..|..|+..+++.+|..-  .++.+-+...    
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-----~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-----SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-----ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            46778889999999999999999999999999999     899999999999999988887766  6666665510    


Q ss_pred             ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          488 ------------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       488 ------------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                                  .+-.|++.+|.||.++|++++|...|+++++.+     |.|..+...++..+.
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~aLNn~AY~~a  161 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEIVKKLATSYE  161 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHH
Confidence                        033899999999999999999999999999995     444444444444333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.34  E-value=0.0033  Score=74.28  Aligned_cols=100  Identities=19%  Similarity=0.043  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...|..+|-.+.+.+++..||..++.|+..+|.     +..+|.-++.+|...|+|..|++.+++|..++|.   +.-+-
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---s~y~~  633 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-----DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---SKYGR  633 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCch-----hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---hHHHH
Confidence            345667899999999999999999999999999     9999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |..+.....+|+|.+|+..+.+.+....
T Consensus       634 fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  634 FKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0023  Score=65.87  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 046116          370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR  449 (604)
Q Consensus       370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~  449 (604)
                      +.|.+..+...+++++.-+.++.    -+|+.-+++.++-......-+.+....+...|+|-++++..+..|...|.   
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~----lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~---  262 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQ----LKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG---  262 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHH----hccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc---
Confidence            44667778888888888777666    66777888877777777788899999999999999999999999999999   


Q ss_pred             cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                        +..+|+.||.++...-+..+|..|+..+|+++|.
T Consensus       263 --nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  263 --NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             --hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence              9999999999999999999999999999999998

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0049  Score=67.28  Aligned_cols=107  Identities=15%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHH--------
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT--------  477 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~--------  477 (604)
                      .++..+...+.+..+|+.+.+.|+.++|+-.|+.|+.+.|-     +..+|.-+-.||+..|++.+|..-++        
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~  400 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN  400 (564)
T ss_pred             HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence            34445567889999999999999999999999999999998     78888888888888888777655444        


Q ss_pred             ----------------------------HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          478 ----------------------------RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       478 ----------------------------rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                                                  ++|+++|+   +.+|-..+|..+..-|.+++++.-++++|...
T Consensus       401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~  468 (564)
T KOG1174|consen  401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF  468 (564)
T ss_pred             chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence                                        44555666   77777777777777777777777777777763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.27  E-value=0.0083  Score=65.27  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ...+...+....+.|+++.|...|.+|.+.+|+     .. ......+..++..|++++|+..++++++.+|+   ++.+
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-----~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~a  189 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADN-----DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEV  189 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence            344555566679999999999999999999998     43 33334589999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +.-++.+|...|++++|+..+.+..+.
T Consensus       190 l~ll~~~~~~~gdw~~a~~~l~~l~k~  216 (398)
T PRK10747        190 LRLAEQAYIRTGAWSSLLDILPSMAKA  216 (398)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            999999999999999999999888887

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.25  E-value=0.0033  Score=68.66  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C-----cccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--------K-----MRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--------~-----~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ........|...|++++|..|+-.|..||+++..        .     .......+-..+..||+++++.+-|+....+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            4455667888999999999999999999999754        1     11223445667899999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      |.++|.   +..-++++|.++..+.+|.+|-..+--|.=.
T Consensus       255 I~lnP~---~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  255 INLNPS---YFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999   9999999999999999999998887766554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.24  E-value=5.6e-05  Score=80.32  Aligned_cols=202  Identities=13%  Similarity=-0.008  Sum_probs=138.9

Q ss_pred             hhHHHHHHHHHh----------hcCcchHHHHHHHHHhhhcChhHHhhccc-----ccchhHHHHHHHH-----hhhhcc
Q 046116          310 WQYAAIDSLLLL----------LKDPDTRYEVIDIAALFLVDLVELKSLNG-----RERVGEAITQTLL-----QDYHKV  369 (604)
Q Consensus       310 wq~~~idcll~L----------l~dr~T~y~algka~~aL~DL~eL~eLg~-----~~~lGd~i~k~L~-----~dy~~i  369 (604)
                      -.+.+|||----          .-+|+..|+-+-+-+.|=+|-.+...|..     ...++.+-.....     .||.. 
T Consensus       112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~-  190 (536)
T KOG4648|consen  112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET-  190 (536)
T ss_pred             chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-
Confidence            457899997543          33566778877777777777666666521     1222111111111     12222 


Q ss_pred             ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChH--HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046116          370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDE--EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK  447 (604)
Q Consensus       370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~e--dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~  447 (604)
                       .-.+.+.+.++...+..+...+ |+.-..+ .++-  ........+...+..|+.+++.|.|+.|+.+|+..+..+.+ 
T Consensus       191 -vL~LEP~~~ELkK~~a~i~Sl~-E~~I~~K-sT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~-  266 (536)
T KOG4648|consen  191 -VLALEPKNIELKKSLARINSLR-ERKIATK-STPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD-  266 (536)
T ss_pred             -HHhhCcccHHHHHHHHHhcchH-hhhHHhh-cCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc-
Confidence             1134455555555555555444 2222222 1211  11223334455789999999999999999999999998877 


Q ss_pred             cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          448 MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       448 ~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                          +..+..| +..|.+.-+|..|+.+|.+++-++|.   +.+++-+++.+.--+|...|+..+++.++.+.|.+.
T Consensus       267 ----~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s---~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~  335 (536)
T KOG4648|consen  267 ----SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT---PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE  335 (536)
T ss_pred             ----cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC---cCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence                6777777 99999999999999999999999999   999999999999999999999999999999955443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.23  E-value=0.00035  Score=50.28  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL  510 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL  510 (604)
                      |++||+++|+   ++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence            4566666666   6666666666666666666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.011  Score=63.24  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS  497 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG  497 (604)
                      .+.|..++..|-+.+|...+..+|+..|-      +..|..++.+|....++..|+..+.+.++.-|.   +.--+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~---~VT~l~g~A  297 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF---DVTYLLGQA  297 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc---hhhhhhhhH
Confidence            45677788888888888888888887775      666667777777777777777777777777777   777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          498 QAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       498 ~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      .++..++++++|++.|+.+++..+.+
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHPIN  323 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence            77777777777777777777775544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0055  Score=63.32  Aligned_cols=101  Identities=15%  Similarity=0.039  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .-...+-.|..+-..|+|++|++.|+..|+-+|.     +.++|-..-.+.-.+|+--+||.....-++.-+.   ..+|
T Consensus        85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-----~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---D~EA  156 (289)
T KOG3060|consen   85 SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-----DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---DQEA  156 (289)
T ss_pred             ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---cHHH
Confidence            3455667788888899999999999999999999     8999998888999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |..++.+|..+|+|+.|.-.+++.+=..|
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999998833

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.00074  Score=71.74  Aligned_cols=104  Identities=15%  Similarity=0.119  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .++.+---|.-+|-.++-+-|+.+|++.|.+--.     ++.+|.|.|.|-+--++|+-++..+.+|+....+.......
T Consensus       323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv  397 (478)
T KOG1129|consen  323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV  397 (478)
T ss_pred             cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence            4555556677788899999999999999999887     89999999999999999999999999999876532235778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ||++|.+....||+.-|...|+-||..++
T Consensus       398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  398 WYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             hhccceeEEeccchHHHHHHHHHHhccCc
Confidence            99999999999999999999999998844

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.20  E-value=0.011  Score=61.17  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..|-++|....+.|+|++|+..|.+.....|-  .+....+....+.++++-++|++|+...++=+.+.|+...-.-+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~--s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF--SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4789999999999999999999999999998886  34467888889999999999999999999999999993333557


Q ss_pred             HHHHHHHHHHcCC--------HHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGL--------AKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd--------~dEAL~d~~kALkl~~~~~  524 (604)
                      +|-+|.+++..=+        ..+|+.+|+..+...|+..
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            8889998776532        5678899999999988765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.20  E-value=0.00064  Score=51.09  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      .++..+|.+|..+|++++|+..++++++.+|+   +..+++.+|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence            46788899999999999999999999999999   8888888775

>PRK11906 transcriptional regulator; Provisional

Probab=97.17  E-value=0.0027  Score=70.29  Aligned_cols=100  Identities=17%  Similarity=0.099  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCcccchHHHHHHHHHHHHHc---------CCcHHHHHHHHHHH
Q 046116          416 MLKQQGNQEFWAGY---IEEAVKKYSKAL---DLCPLKMRKERIVLYSNRAQCYLML---------KKPEAAISDTTRAL  480 (604)
Q Consensus       416 ~lk~~GN~lfk~Gd---yeeAIe~YtkAL---el~P~~~~~~~a~l~~NRA~~ylkL---------gdy~eAI~D~~rAL  480 (604)
                      .+..+|...+.++.   .+.|+.++++|+   +++|.     .+.+|.-+|.||+..         .+-.+|...+++|+
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            55777777776664   578999999999   99999     999999999999876         23567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       481 eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ++||+   ++.|++.+|.++...|+++.|+..|++|+.+.|+.
T Consensus       332 eld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        332 DITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             hcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence            99999   99999999999999999999999999999996654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.17  E-value=0.0071  Score=68.92  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ---|.-.|-.+-..++|++||.+|+.|+.+.|+     +..++..+|....++++|+.....=.+-+++.|.   +...|
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w  146 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASW  146 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHH
Confidence            445777888888889999999999999999999     8999999999999999999999999999999999   88899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +..+.++...|++..|+...+...+..
T Consensus       147 ~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  147 IGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988888874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.17  E-value=0.001  Score=72.39  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      ..+......+-+.||.+|-.|+|+.||..-..-|++... ..+.-.-.+++|+|.||+-+|+|+.|+++|+.++.|
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            334445566777777888888888888777777766422 001112456777777888888888877777776544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.16  E-value=0.00036  Score=50.24  Aligned_cols=34  Identities=38%  Similarity=0.459  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHH
Q 046116          436 KYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAIS  474 (604)
Q Consensus       436 ~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~  474 (604)
                      +|++||+++|+     ++.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~-----n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPN-----NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCC-----CHHHHHHHHHHHHHCcCHHhhcC
Confidence            48999999999     99999999999999999999973

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.12  E-value=0.0044  Score=70.15  Aligned_cols=100  Identities=12%  Similarity=0.032  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHh
Q 046116          413 SVFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--------PEAAISDTTRALS  481 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--------y~eAI~D~~rALe  481 (604)
                      .+-.+..+|..++..++   +..|+.+|.+||+++|+     ++.+|..+|.+|.....        ...+.....+++.
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-----~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-----FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            57778888988887765   88999999999999999     99999999998876533        3455666666666


Q ss_pred             c--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          482 L--SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       482 L--dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +  +|.   .+.+|.-+|..+...|++++|...+++|+.+.
T Consensus       413 l~~~~~---~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~  450 (517)
T PRK10153        413 LPELNV---LPRIYEILAVQALVKGKTDEAYQAINKAIDLE  450 (517)
T ss_pred             cccCcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            4  666   67889999999999999999999999999993

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.11  E-value=0.00097  Score=46.35  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .++.++|.+|..+|+|++|+.+++++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45566666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.08  E-value=0.022  Score=56.40  Aligned_cols=108  Identities=13%  Similarity=0.049  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHh
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEAAISDTTRALS  481 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~eAI~D~~rALe  481 (604)
                      ........|..+|+.|+|++|+..|++.|...|.  ++....+++.+|.+++++.+           ..+|+..++..++
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~--~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN--SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999998  44567788889999877643           4589999999999


Q ss_pred             cCCCCCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          482 LSKTMSSHSKS--------------LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       482 LdPd~~~n~KA--------------~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .-|+..--.+|              -+..|.-|+..|.|..|+.-++.+++..|+
T Consensus       119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen  119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD  173 (203)
T ss_dssp             H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred             HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            99993321222              345688899999999999999999999664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.06  E-value=0.0026  Score=65.94  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCC---
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLML-KKPEAAISDTTRALSLSKTM---  486 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALeLdPd~---  486 (604)
                      ..+..+.+.++. ++..++++|+.+|++|+++.-. .....-+.++.+.|.+|... |++++|+..|.+|+++-...   
T Consensus        73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            345566655555 5555999999999999997322 11223578999999999998 99999999999999873221   


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+.+.+.|.++..+|+|++|+..|++..+.+.
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            11356778899999999999999999999998744

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.06  E-value=0.019  Score=58.82  Aligned_cols=122  Identities=11%  Similarity=-0.006  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC------------------cHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK------------------PEAAIS  474 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd------------------y~eAI~  474 (604)
                      ........|..+|+.++|++|+..|++.|+..|+  ++....+++.+|.++..+++                  -.+|+.
T Consensus        68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~--~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            3455779999999999999999999999999998  45567888899999866651                  257899


Q ss_pred             HHHHHHhcCCCCCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          475 DTTRALSLSKTMSSHSKS--------------LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       475 D~~rALeLdPd~~~n~KA--------------~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      .+++.++.-|+..--.+|              -+..|.-|++.|.|.-|+.-++.+++..|+.     ....+.+..+..
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-----~~~~eal~~l~~  220 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-----QATRDALPLMEN  220 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-----chHHHHHHHHHH
Confidence            999999999983322223              3345677999999999999999999985543     335555555444


Q ss_pred             H
Q 046116          541 K  541 (604)
Q Consensus       541 K  541 (604)
                      .
T Consensus       221 a  221 (243)
T PRK10866        221 A  221 (243)
T ss_pred             H
Confidence            3

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.06  E-value=0.0019  Score=59.56  Aligned_cols=69  Identities=17%  Similarity=0.050  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+++++|.+|-.+|+.++|+..|++|+....+......+++.+|.++..+|++++|+..+++++...|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            478899999999999999999999999986653335789999999999999999999999999987553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.017  Score=63.25  Aligned_cols=105  Identities=13%  Similarity=-0.032  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..|.-.|..+|..++|+.|+..-.++|+.+|.     +...|...|..++.+++.++|+-.++.|..|.|.   ...
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL~  369 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY---RLE  369 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHHHHHHHHhcchh---hHH
Confidence            46778888999999999999999999999999999     8999999999999999999999999999999999   899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .|-.+-.+|...|++.||...-+.+++..+++.
T Consensus       370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999998876654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.99  E-value=0.0043  Score=64.41  Aligned_cols=70  Identities=7%  Similarity=-0.065  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      ...+...|..++..|+|++|+..|.+++...|+  ....+.++.++|.+|..+|++++|+..++++++..|+
T Consensus       180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            467889999999999999999999999999887  4557889999999999999999999999999999999

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.88  E-value=0.024  Score=56.60  Aligned_cols=104  Identities=14%  Similarity=0.052  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALD-LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALe-l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +.......||.+...|+|.||...|.+++. +...     ++..+..+|++.+.++++..|...++...+-+|.. ..+.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-r~pd  161 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-RSPD  161 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-CCCC
Confidence            456677899999999999999999999997 3445     68888999999999999999999999999999873 2345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ...-.|.+|..+|++.+|...|+.++...|+
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            5666799999999999999999999999553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.81  E-value=0.023  Score=62.47  Aligned_cols=64  Identities=22%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS  481 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe  481 (604)
                      .+.-+..++..+.++++|+.|+...++|+++.|+     ....|+.+|.||.++|+|+.|+..++.+--
T Consensus       233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-----~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  233 DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-----EFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            4788899999999999999999999999999999     899999999999999999999987775533

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.81  E-value=0.0029  Score=44.38  Aligned_cols=33  Identities=36%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL  446 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~  446 (604)
                      +..+..+|..++..|+|++|+..|++||+++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467889999999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.70  E-value=0.015  Score=65.87  Aligned_cols=96  Identities=18%  Similarity=0.104  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .+.-.+..+-..|+|++|++..++||+..|.     .+.+|..+|.+|-+.|++.+|....+.|-.+|+.   .--.--.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNsK  267 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINSK  267 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHHH
Confidence            4556677888899999999999999999999     8999999999999999999999999999999998   5555556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      -++.+...|+.++|...+..+.+.
T Consensus       268 ~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  268 CAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhcCC
Confidence            688888999999999887777665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.69  E-value=0.03  Score=49.75  Aligned_cols=92  Identities=24%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHH
Q 046116          423 QEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYD  501 (604)
Q Consensus       423 ~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~  501 (604)
                      .++..|+++.|+..|.+++...|.  .......+..++..+...+++..|+..+.+++...|.   . ..++..++..+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~  213 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE--LNELAEALLALGALLEALGRYEEALELLEKALKLNPD---DDAEALLNLGLLYL  213 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC--ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc---cchHHHHHhhHHHH
Confidence            444555555555555555444431  0013444444444444555555555555555555444   2 444555555555


Q ss_pred             HcCCHHHHHHHHHHHHhc
Q 046116          502 MMGLAKESLMDALTFIGS  519 (604)
Q Consensus       502 ~LGd~dEAL~d~~kALkl  519 (604)
                      ..+++++|+..+..+++.
T Consensus       214 ~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         214 KLGKYEEALEYYEKALEL  231 (291)
T ss_pred             HcccHHHHHHHHHHHHhh
Confidence            555555555555555554

>PRK15331 chaperone protein SicA; Provisional

Probab=96.67  E-value=0.0063  Score=59.17  Aligned_cols=80  Identities=15%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ..+-+...|-.+..+|+|++|+..|..|..++++     ++...+..|.||+.+|+...|...+..|+. +|.    ...
T Consensus        70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-----dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~----~~~  139 (165)
T PRK15331         70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-----DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE----DES  139 (165)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-----CCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc----hHH
Confidence            3567899999999999999999999999999998     788888899999999999999999999999 455    345


Q ss_pred             HHHHHHHHHH
Q 046116          493 LWRRSQAYDM  502 (604)
Q Consensus       493 ~~rrG~a~~~  502 (604)
                      +..++++++.
T Consensus       140 l~~~A~~~L~  149 (165)
T PRK15331        140 LRAKALVYLE  149 (165)
T ss_pred             HHHHHHHHHH
Confidence            6666776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.66  E-value=0.0043  Score=43.02  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL  446 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~  446 (604)
                      ++.+...|..+++.|+|++|++.|+++++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            457889999999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.65  E-value=0.0094  Score=62.69  Aligned_cols=84  Identities=18%  Similarity=0.077  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 046116          428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK  507 (604)
Q Consensus       428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d  507 (604)
                      .++.+|...|.+..+..|.     .+.+++..|.|++.+|+|++|.+.+.+|+..+|+   ++.++.+++.+...+|+..
T Consensus       181 e~~~~A~y~f~El~~~~~~-----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGS-----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TC
T ss_pred             hhHHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCCh
Confidence            3699999999998888777     7899999999999999999999999999999999   9999999999999999996


Q ss_pred             HHHHHHHHHHhc
Q 046116          508 ESLMDALTFIGS  519 (604)
Q Consensus       508 EAL~d~~kALkl  519 (604)
                      ++...|..-++.
T Consensus       253 ~~~~~~l~qL~~  264 (290)
T PF04733_consen  253 EAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHH
Confidence            666655555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.65  E-value=0.1  Score=60.12  Aligned_cols=166  Identities=16%  Similarity=0.020  Sum_probs=122.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          404 DEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       404 ~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      ++.++.-+.-..-|...|..+-+.++.+.|-+.|+..+..+|.     ...+|..++..-.+.|+.-.|-..++++.--+
T Consensus       675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-----~ipLWllLakleEk~~~~~rAR~ildrarlkN  749 (913)
T KOG0495|consen  675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-----SIPLWLLLAKLEEKDGQLVRARSILDRARLKN  749 (913)
T ss_pred             HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence            3444555556778899999999999999999999999999999     89999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCchhH
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIE  563 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~~~e  563 (604)
                      |+   +...|...-+.-+..|+.++|.....+||..||++-      +.=.-+-.+...-++.-.+.++.+|-..+....
T Consensus       750 Pk---~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg------~LWaEaI~le~~~~rkTks~DALkkce~dphVl  820 (913)
T KOG0495|consen  750 PK---NALLWLESIRMELRAGNKEQAELLMAKALQECPSSG------LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL  820 (913)
T ss_pred             CC---cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc------hhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence            99   998898888999999999999999999999987543      111111111122222233444555544444443


Q ss_pred             HHHHHHHHhHHHHHHHHHhc
Q 046116          564 EKLVEKTCRRRKLEKARRKK  583 (604)
Q Consensus       564 ~~lvek~~~~~k~ekArRk~  583 (604)
                      ...-..--+..|++|++...
T Consensus       821 laia~lfw~e~k~~kar~Wf  840 (913)
T KOG0495|consen  821 LAIAKLFWSEKKIEKAREWF  840 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333344566677766543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.65  E-value=0.0073  Score=65.99  Aligned_cols=108  Identities=20%  Similarity=0.279  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---MSS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~~~  488 (604)
                      .-.++-+.||.+.-.|+|+.|+++|.+++.+.-. ..+...+..-+-+|..|.-+.+|.+||.+..+-|.+...   ...
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3457789999999999999999999998876422 112334555556899999999999999999998776432   112


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ...|+|-+|.+|-.+|..+.|+......+++.
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            57899999999999999999999888887763

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.64  E-value=0.012  Score=67.20  Aligned_cols=106  Identities=19%  Similarity=-0.051  Sum_probs=97.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..++..+.+-..|-.+...|+-++|..+-..++..++.     ..++|.-.|..+..-++|++||..|+.|+.++|+   
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d---  107 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD---  107 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---
Confidence            34457888999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |...+..++....++|+++.....-.+-+.+++.
T Consensus       108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~  141 (700)
T KOG1156|consen  108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS  141 (700)
T ss_pred             cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence            9999999999999999999888877777777554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.58  E-value=0.0082  Score=56.82  Aligned_cols=58  Identities=21%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .|.+...-|+.+.|++-+.++|.+-|.   ++.+|.+|++++...|+.++|+.|+.+++++
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            466777889999999999999999999   9999999999999999999999999999999

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.51  E-value=0.017  Score=57.06  Aligned_cols=68  Identities=21%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHH
Q 046116          413 SVFMLKQQGNQEFWA----------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEA  471 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~----------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~e  471 (604)
                      .++.+.+-|.++...          .-+++||..|.+||.++|+     ...++.+.|.+|..++.           |++
T Consensus        24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k   98 (186)
T PF06552_consen   24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEK   98 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            455555555554322          3478999999999999999     89999999999998864           888


Q ss_pred             HHHHHHHHHhcCCC
Q 046116          472 AISDTTRALSLSKT  485 (604)
Q Consensus       472 AI~D~~rALeLdPd  485 (604)
                      |...+.+|...+|+
T Consensus        99 A~~~FqkAv~~~P~  112 (186)
T PF06552_consen   99 ATEYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999999

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.49  E-value=0.036  Score=65.91  Aligned_cols=199  Identities=14%  Similarity=-0.000  Sum_probs=137.9

Q ss_pred             HHHHHHHhhcCCchhh--HHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhc----ccccchhHHHHHHHHhhhhcc
Q 046116          296 VIESVCNVSRSSDDWQ--YAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSL----NGRERVGEAITQTLLQDYHKV  369 (604)
Q Consensus       296 ~~~~lc~~~rssd~wq--~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eL----g~~~~lGd~i~k~L~~dy~~i  369 (604)
                      +.-+|-.+=|.++|..  .-.+||--.|-...++--.++-..-...+++.+..++    +.+...+....+..+++..+.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            3445556667777633  3356666666665666556666666677777777766    333334444444444333332


Q ss_pred             ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 046116          370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR  449 (604)
Q Consensus       370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~  449 (604)
                      ..+       +...++..+..               .+...++....|...|.+|...|.|..|+..|++|..++|.   
T Consensus       574 ea~-------n~h~aV~~fQs---------------ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---  628 (1238)
T KOG1127|consen  574 EAH-------NLHGAVCEFQS---------------ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---  628 (1238)
T ss_pred             Ccc-------chhhHHHHHHH---------------HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---
Confidence            222       22222222111               12344557889999999999999999999999999999999   


Q ss_pred             cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                        ..-..+..|.....+|+|.+|++.+...+.-...    .+..++.+.|.+..++..|-+..|...++++++.+.
T Consensus       629 --s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~  702 (1238)
T KOG1127|consen  629 --SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI  702 (1238)
T ss_pred             --hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence              6777777899999999999999999998865433    233678899999999999999999999888888743

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.35  E-value=0.0082  Score=45.04  Aligned_cols=42  Identities=21%  Similarity=0.062  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ  461 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~  461 (604)
                      ..+...|..+...|++++|+..|+++|+.+|+     ++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-----DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----CHHHHHHhhh
Confidence            35778899999999999999999999999999     8999988775

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.045  Score=57.65  Aligned_cols=98  Identities=12%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC---
Q 046116          429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL---  505 (604)
Q Consensus       429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd---  505 (604)
                      +.+..+.....-|..+|+     ++.-|..+|.+|+.+|+++.|...|.+|++|.|+   |+..+.-.|.+++...+   
T Consensus       137 ~~~~l~a~Le~~L~~nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~  208 (287)
T COG4235         137 EMEALIARLETHLQQNPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQM  208 (287)
T ss_pred             cHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcc
Confidence            356677778888889999     9999999999999999999999999999999999   99999999999988754   


Q ss_pred             HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          506 AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       506 ~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      ..++...+++++++     ||.+.....++..-.
T Consensus       209 ta~a~~ll~~al~~-----D~~~iral~lLA~~a  237 (287)
T COG4235         209 TAKARALLRQALAL-----DPANIRALSLLAFAA  237 (287)
T ss_pred             cHHHHHHHHHHHhc-----CCccHHHHHHHHHHH
Confidence            47888899999999     555655665555443

>PRK10941 hypothetical protein; Provisional

Probab=96.32  E-value=0.028  Score=58.74  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          448 MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       448 ~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+........|+=.+|++.++++.|+...++.+.++|+   .+.-+--||.+|.++|.+..|+.|++.+++.||+
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            34556678888899999999999999999999999999   8877778999999999999999999999999775

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.25  E-value=0.0065  Score=42.37  Aligned_cols=32  Identities=28%  Similarity=0.284  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+|.++|.+|..+|++++|+..++++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34555666666666666666666666666654

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.088  Score=59.86  Aligned_cols=101  Identities=15%  Similarity=0.019  Sum_probs=79.7

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..++....++-.--.+.+.++|++|+    +.|+..+-  .......++.+|.|++++++.++|+.+++   -+++.   
T Consensus        41 ~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~---  108 (652)
T KOG2376|consen   41 IVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRL---  108 (652)
T ss_pred             cCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHh---ccccc---
Confidence            34566777777888888888888888    34555542  11134455789999999999999999999   56666   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+.+.-+|+++|.+|+|++|+..|+..++...
T Consensus       109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen  109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            668899999999999999999999999988843

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.24  E-value=0.075  Score=61.09  Aligned_cols=99  Identities=16%  Similarity=-0.020  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      |...-...|...+|+.|-..+.+|-...|.      ..+|+.-+..-.-+++.++|+..++++|+.-|+   +.|.|..+
T Consensus       621 wlaavKle~en~e~eraR~llakar~~sgT------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lml  691 (913)
T KOG0495|consen  621 WLAAVKLEFENDELERARDLLAKARSISGT------ERVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLML  691 (913)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhccCCc------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHH
Confidence            333444455666666666666666666665      567777777778889999999999999999999   99999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          497 SQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       497 G~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      |+++..+++.+.|...|...++.||+..
T Consensus       692 GQi~e~~~~ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  692 GQIEEQMENIEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence            9999999999999999999999988644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.20  E-value=0.11  Score=46.17  Aligned_cols=109  Identities=20%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ-CYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~-~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      ........+...|......+++..|+..+.+++...+.     .......... ++...|+++.|+..+.+++..+|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  164 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD-----PDLAEALLALGALYELGDYEEALELYEKALELDPELN  164 (291)
T ss_pred             hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence            34556677888899999999999999999999998887     3444444555 89999999999999999988777101


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .....++.++..+...+++++|+..+.++++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            17788888888889999999999999999999443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.17  E-value=0.018  Score=58.72  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=93.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+...++.+..+.-.|.-+...|+|+.|.+.|+..++++|.     +--++.|||..+.--|+|.-|..|+.+--+-||+
T Consensus        91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-----y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785          91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-----chHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            34556778999999999999999999999999999999999     8889999999999999999999999887776665


Q ss_pred             CCC-------------------------------------------------------------------CHHHHHHHHH
Q 046116          486 MSS-------------------------------------------------------------------HSKSLWRRSQ  498 (604)
Q Consensus       486 ~~~-------------------------------------------------------------------n~KA~~rrG~  498 (604)
                      .+-                                                                   -+++||.+|+
T Consensus       166 DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K  245 (297)
T COG4785         166 DPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK  245 (297)
T ss_pred             ChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence            210                                                                   1335888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 046116          499 AYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       499 a~~~LGd~dEAL~d~~kALkl  519 (604)
                      -+..+|+.++|..-|+-++..
T Consensus       246 ~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         246 YYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHhccccHHHHHHHHHHHHHH
Confidence            999999999999998888776

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.16  E-value=0.048  Score=63.39  Aligned_cols=115  Identities=17%  Similarity=0.066  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      |...+....+.++-++|..+..+|-.++|.     .+..|+.+|.++...|++.+|...+..|+.+||+   ++.+..-+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Al  724 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPL-----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTAL  724 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchh-----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence            345556666777788999999999999999     8999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHcCCHHHHHH--HHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          497 SQAYDMMGLAKESLM--DALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       497 G~a~~~LGd~dEAL~--d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      |.++...|+..-|..  -+..++++     +|.+.+.=+++-.+.+++-.
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr~-----dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  725 AELLLELGSPRLAEKRSLLSDALRL-----DPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccc
Confidence            999999999888877  88999999     55666677777666665443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.14  Score=54.16  Aligned_cols=115  Identities=14%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHH---------------
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR---------------  478 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r---------------  478 (604)
                      .+....++..+...|++.+|...+..++...|.     +..+...+|.||+..|+++.|...+..               
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a  208 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA  208 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence            345667788899999999999999999999999     788888899999999999665544332               


Q ss_pred             -------------------HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          479 -------------------ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       479 -------------------ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                                         .+.-||+   +..+-+.+|..+...|+.++|++.+-..++.+...+   +......+-.++
T Consensus       209 ~i~ll~qaa~~~~~~~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~---d~~~Rk~lle~f  282 (304)
T COG3118         209 QIELLEQAAATPEIQDLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE---DGEARKTLLELF  282 (304)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---CcHHHHHHHHHH
Confidence                               2234788   999999999999999999999999998888844333   334444444433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.099  Score=59.46  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=69.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------------
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS--------------  483 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd--------------  483 (604)
                      .+++...|+.++.++|+..++   -+++.     ...+..-+|++.+++|+|++|+..|...++-+              
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---ccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            567777777777777777777   33333     34566667777777777777777776664332              


Q ss_pred             -------------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          484 -------------KTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       484 -------------Pd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                                   |.. ......+|+.|.++...|+|.+|++.+++++++|..
T Consensus       155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e  207 (652)
T KOG2376|consen  155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE  207 (652)
T ss_pred             HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence                         221 125678999999999999999999999999777544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.85  E-value=0.072  Score=50.76  Aligned_cols=71  Identities=17%  Similarity=-0.034  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+.-+++.|...++.|+|.+|+..++....--|.+.--..|.+.++-+|+..|++++|+..+++++++.|+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            57788889999999999999999999999999886667899999999999999999999999999999654

>PLN03077 Protein ECB2; Provisional

Probab=95.61  E-value=0.82  Score=54.56  Aligned_cols=96  Identities=13%  Similarity=-0.010  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+.-....+.+.|++++|.+.+++. .+.|+      +..|..+-.++..-++.+.|...++++++++|+   +...|
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~~~y  694 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD------PAVWGALLNACRIHRHVELGELAAQHIFELDPN---SVGYY  694 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchH
Confidence            567888899999999999999999874 45665      667777766777889999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..++.+|...|++++|.+..+..-+.
T Consensus       695 ~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        695 ILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            99999999999999999988776554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.03  Score=59.29  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCC-
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL----SKTM-  486 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL----dPd~-  486 (604)
                      ..+..+.+.|-.+|+.|+|++|++.|+.|++...-     .+.+-+|.|.|++..++|+.|++...+.++-    .|.- 
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCC-----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            35788899999999999999999999999999887     7888899999999999999999998887753    3430 


Q ss_pred             --------------C-------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116          487 --------------S-------SHSKSLWRRSQAYDMMGLAKESLMDA  513 (604)
Q Consensus       487 --------------~-------~n~KA~~rrG~a~~~LGd~dEAL~d~  513 (604)
                                    +       .-.+|+.-.+-++++.|+++.|.+.+
T Consensus       217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                          0       03467778889999999998877654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.57  E-value=0.12  Score=61.30  Aligned_cols=108  Identities=16%  Similarity=0.016  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CC--CH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SS--HS  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~--n~  490 (604)
                      .......|..++..|++++|...+.++++..|..........+.++|.++...|++++|...+.+++.+.... ..  ..
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3344457889999999999999999999976652222234567889999999999999999999999874431 00  23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .++..+|.+++..|++++|...+++++....
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  562 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIE  562 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999998744

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.56  E-value=0.29  Score=58.06  Aligned_cols=106  Identities=16%  Similarity=0.080  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM---RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--SS  488 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~---~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--~~  488 (604)
                      +..+...|..++..|++++|...+.+++++.....   ......++.++|.++...|++++|...+.+++.+....  ..
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            44667889999999999999999999999743210   01134557788999999999999999999999874321  11


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ...++..+|.++...|++++|...+.++...
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567777999999999999999999999876

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.54  E-value=0.28  Score=53.61  Aligned_cols=97  Identities=20%  Similarity=0.040  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CcccchHHHHHHHHHHHHHcCCcHHH
Q 046116          419 QQGNQEFWAGYIEEAVKKYSKALDLCPL--------------------------KMRKERIVLYSNRAQCYLMLKKPEAA  472 (604)
Q Consensus       419 ~~GN~lfk~GdyeeAIe~YtkALel~P~--------------------------~~~~~~a~l~~NRA~~ylkLgdy~eA  472 (604)
                      ..+..+...|++++|.+...+++...-+                          ...++++.+++.+|..+++.+.|.+|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence            3444555666666666666666543111                          12233789999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          473 ISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       473 I~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      -..++.|++..|+    ...+.-+|.++.++|+..+|-..+++++-.
T Consensus       348 ~~~leaAl~~~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         348 SEALEAALKLRPS----ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHhcCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999987    677888999999999999999999999955

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.47  E-value=0.15  Score=53.73  Aligned_cols=97  Identities=10%  Similarity=-0.097  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH--cC--CcHHHHHHHHHHHhcCCCCCCCH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM--LK--KPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk--Lg--dy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..--.-..+.+.++++.|...+...-+.+.+       .+..++|.++..  .|  ++.+|...++...+..|.   .+
T Consensus       132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~  201 (290)
T PF04733_consen  132 ELLALAVQILLKMNRPDLAEKELKNMQQIDED-------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TP  201 (290)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SH
T ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CH
Confidence            34445566888999999999999999888877       455556665554  45  699999999998777677   89


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+..+|.++..+|+|++|...+.++++.++
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999998743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.39  E-value=0.087  Score=54.89  Aligned_cols=67  Identities=7%  Similarity=-0.085  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          456 YSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       456 ~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+|-|.-+++.|+|.+|..-+..=++.-|+..--+.|+|-+|++++.+|+|++|...|..+++-.|+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            7888999999999999999999999999996656789999999999999999999999999998553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.36  E-value=0.032  Score=38.79  Aligned_cols=31  Identities=13%  Similarity=0.151  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++|+.+|.+|..+|++++|+..|+++++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            6899999999999999999999999999955

...

>smart00028 TPR Tetratricopeptide repeats

Probab=95.27  E-value=0.024  Score=36.32  Aligned_cols=31  Identities=26%  Similarity=0.301  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+.++|.++..++++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.23  Score=53.40  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+.-|-.-|.-|++-++|..|+..|++.|+-.-.. ..+.-.|.+||-|.+.+|+|..|+.|+.+++++.|.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~  151 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT  151 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            366777777999999999999999999999876442 347778999999999999999999999999999543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.055  Score=58.43  Aligned_cols=86  Identities=16%  Similarity=-0.022  Sum_probs=60.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L  503 (604)
                      +..+.||+.||....-.+..+..  .  ...+-.-.|.||+.+|+|++|+..++-+..-+..   +.+...++|-|++-+
T Consensus        32 fls~rDytGAislLefk~~~~~E--E--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyL  104 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDRE--E--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFYL  104 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchh--h--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHHH
Confidence            34566788888887777765543  1  2233344578888888888888888887775555   677788888888888


Q ss_pred             CCHHHHHHHHHHH
Q 046116          504 GLAKESLMDALTF  516 (604)
Q Consensus       504 Gd~dEAL~d~~kA  516 (604)
                      |.|.||...-.+|
T Consensus       105 g~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  105 GQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHhhC
Confidence            8888887665544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.98  Score=52.23  Aligned_cols=103  Identities=14%  Similarity=0.086  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ..+.+.+...|+..+|..+++.|...+..-|. +.....+.+..+++-||+++.+.+.|.+.+.+|=+.||.   ++-.-
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q  431 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQ  431 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHH
Confidence            45789999999999999999999999998776 344456888999999999999999999999999999999   88777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +...++...-|.-++|+....+.....
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            778888899999999999888777653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.09  E-value=1.4  Score=44.44  Aligned_cols=100  Identities=15%  Similarity=0.083  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...++..|..+++.+|....++..+..|. .+..+..+.+  |.+|..+|++.+|.+.++.++..-|+    +.+
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~Ll~--aR~laa~g~~a~Aesafe~a~~~ypg----~~a  195 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHLLF--ARTLAAQGKYADAESAFEVAISYYPG----PQA  195 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCchHHH--HHHHHhcCCchhHHHHHHHHHHhCCC----HHH
Confidence            3556788899999999999999999999999987 3333444444  67889999999999999999999998    677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..+-+.-+.++|+.++|...+....+.
T Consensus       196 r~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         196 RIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            777799999999999998887776665

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.98  E-value=0.019  Score=63.67  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+.-+-+++.++++.++|..|+....+||+++|.     ...+|..||.+.+++++|.+|..++.....+.|+   .
T Consensus        34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-----~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn---d  105 (476)
T KOG0376|consen   34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-----YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPN---D  105 (476)
T ss_pred             CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-----hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcC---c
Confidence            3345666778888999999999999999999999999     9999999999999999999999999999999999   7


Q ss_pred             HHHHHHHHHHHH
Q 046116          490 SKSLWRRSQAYD  501 (604)
Q Consensus       490 ~KA~~rrG~a~~  501 (604)
                      .++.-....|-.
T Consensus       106 ~~~~r~~~Ec~~  117 (476)
T KOG0376|consen  106 PDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHHH
Confidence            766555544443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.86  E-value=0.013  Score=62.71  Aligned_cols=76  Identities=16%  Similarity=0.082  Sum_probs=61.4

Q ss_pred             HHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          464 LMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       464 lkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                      +..|+++.||..++.||.++|.   ....|-.|+.++.++++...|+.||..++++.++..  +.-+...+..+++..--
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNWE  199 (377)
T ss_pred             hcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhchH
Confidence            3457799999999999999999   999999999999999999999999999999966544  33445555555544433


Q ss_pred             h
Q 046116          544 N  544 (604)
Q Consensus       544 ~  544 (604)
                      .
T Consensus       200 ~  200 (377)
T KOG1308|consen  200 E  200 (377)
T ss_pred             H
Confidence            3

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.85  E-value=0.039  Score=37.77  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |+|++|.++..+|++++|+..|+++++..|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            566777777777777777777777766644

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.79  E-value=0.11  Score=41.38  Aligned_cols=40  Identities=13%  Similarity=-0.083  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      ..++.+|..+.++|+|++|...++.+|+++|+   |..|.--.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~---N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD---NRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---cHHHHHHH
Confidence            35677899999999999999999999999999   87765433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.77  E-value=0.25  Score=45.61  Aligned_cols=63  Identities=21%  Similarity=0.140  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL  480 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL  480 (604)
                      ....+...+..+...|++++|+..+.+++..+|.     +-.+|..+-.+|..+|++.+|+..|.+..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY-----DEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3567778888899999999999999999999999     89999999999999999999999998874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.75  E-value=0.26  Score=57.42  Aligned_cols=95  Identities=12%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+.-....+.+.|++++|.+.+.+. ...|+      ...|..+..++...|+++.|...+++.++++|+   +...|.
T Consensus       463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~---~~~~y~  532 (697)
T PLN03081        463 MHYACMIELLGREGLLDEAYAMIRRA-PFKPT------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE---KLNNYV  532 (697)
T ss_pred             cchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---CCcchH
Confidence            45666778888999999999998764 34454      677888999999999999999999999999999   888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++.+|...|++++|.+.++...+.
T Consensus       533 ~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        533 VLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999887765

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.74  E-value=3.5  Score=51.05  Aligned_cols=95  Identities=9%  Similarity=-0.095  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCCCH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTMSSHS  490 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~~~n~  490 (604)
                      ..+....+.+.+.|++++|++.|.+..+.  .|+      ...|+.+...|.+.|++++|+..+++..+.  .|    +.
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P----d~  754 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP----NT  754 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----CH
Confidence            34555556666667777777777666543  343      556666667777777777777777665543  33    35


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..|..+-.++...|++++|...+...++.
T Consensus       755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        755 ITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            56666666677777777777777666665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.73  E-value=0.68  Score=45.37  Aligned_cols=106  Identities=19%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-CH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-HS  490 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-n~  490 (604)
                      +.-..+.+.|+.+.+.|++++|++.|.++.+.+..  .......+.+.-.+.+..++|..+.....+|-.+-....+ ..
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~  111 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER  111 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence            34578889999999999999999999999998765  3446778888899999999999999999998776433110 11


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 --KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 --KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                        +.-.-.|..+...++|.+|-..|..++.-
T Consensus       112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  112 RNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence              12222356666677777777777666544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.72  E-value=0.13  Score=58.70  Aligned_cols=110  Identities=17%  Similarity=0.063  Sum_probs=93.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116          421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY  500 (604)
Q Consensus       421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~  500 (604)
                      |...-..|+-..|+.+...|+...|.+    .-+-..|+|+..++-|-..+|-..+.++|.++..   .+-.+|-.|.++
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~  686 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAY  686 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhH
Confidence            333446789999999999999999984    5566788999999999999999999999999977   778899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116          501 DMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ  542 (604)
Q Consensus       501 ~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq  542 (604)
                      ..+.+.+.|++.|+.|+++     ++++..++..+...-.++
T Consensus       687 l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i~c~~  723 (886)
T KOG4507|consen  687 LALKNISGALEAFRQALKL-----TTKCPECENSLKLIRCMQ  723 (886)
T ss_pred             HHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHhh
Confidence            9999999999999999999     556666777766655543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.70  E-value=0.17  Score=43.72  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      .+....++|..+|.+.+.++|+..++++++..++  .+....++-.++.+|...|+|.++++.+-+-+++.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A   73 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA   73 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778889999999999999999999999999887  34577788888999999999999999988877653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.70  E-value=0.26  Score=49.51  Aligned_cols=99  Identities=16%  Similarity=0.055  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH-
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS-  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA-  492 (604)
                      .......+..++..|++++|+...+.++....+  ..+.+.+-.++|.+.+.+|.+++|+..++..-.  +    ...+ 
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~----~w~~~  160 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKD--ENLKALAALRLARVQLQQKKADAALKTLDTIKE--E----SWAAI  160 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--c----cHHHH
Confidence            445667888999999999999999999987655  445677788889999999999999988765432  2    2233 


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          493 -LWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       493 -~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                       --.+|-++...|+-++|+..|.++++..
T Consensus       161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         161 VAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence             5568999999999999999999999983

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.61  E-value=0.12  Score=56.15  Aligned_cols=107  Identities=15%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC------
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS------  487 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~------  487 (604)
                      ......|++....+.|+.+++.|.+|+.+.-. ....+...++.-++..|-.+.|+++|+-...+|.++-.+..      
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            45666899999999999999999999998433 12234456788899999999999999999999999876521      


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 -SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 -~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                       -+.-++|+++.++..+|+..+|.+.++++.++-.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence             1345789999999999999999999999988733

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.55  E-value=0.12  Score=55.13  Aligned_cols=82  Identities=20%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +.+....+.+....+.|+.+.|...|..|+.+.|.     ++.++...++....-++.-+|=..|.+||.++|.   |.+
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~-----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~---nse  185 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT-----NPQILIEMGQFREMHNEIVEADQCYVKALTISPG---NSE  185 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC---chH
Confidence            34556666777888999999999999999999999     9999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHH
Q 046116          492 SLWRRSQAYD  501 (604)
Q Consensus       492 A~~rrG~a~~  501 (604)
                      |+.+|+...-
T Consensus       186 ALvnR~RT~p  195 (472)
T KOG3824|consen  186 ALVNRARTTP  195 (472)
T ss_pred             HHhhhhccch
Confidence            9999987543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.034  Score=57.28  Aligned_cols=62  Identities=13%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      -+.+++.-.+|..||+.|.+||.++|.   .+.-|-+|+.||+++.+++....|+++++.+.++.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            367778888999999999999999999   88888889999999999999999999999996653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.17  Score=53.11  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      .....++.+-.+.-+++|.+|...|++.+..+|.     ++.+-+|.|.|.+-+|+..+|++..+.++..+|..
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            4556667777777777777777777777777777     77777777777777777777777777777777773

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.42  E-value=0.17  Score=55.00  Aligned_cols=75  Identities=15%  Similarity=-0.013  Sum_probs=63.3

Q ss_pred             chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC
Q 046116          451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKH  525 (604)
Q Consensus       451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d  525 (604)
                      ....+|.|++..+.++.+|.+++.+++..+.+....  ..-..++.-+|.++..++-++.+++.|+.|++.-.++.|
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            356789999999999999999999999999886441  234567888999999999999999999999999655444

>PRK10941 hypothetical protein; Provisional

Probab=94.26  E-value=0.45  Score=49.89  Aligned_cols=78  Identities=18%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ..-+.+.-..+.+.++|+.|+.+....+.+.|+     ++.-+--||.+|.++|.+..|+.|++.-++..|+   .+.+-
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-----dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---dp~a~  252 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE-----DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---DPISE  252 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---chhHH
Confidence            445666677889999999999999999999999     8999999999999999999999999999999999   66665


Q ss_pred             HHHHHH
Q 046116          494 WRRSQA  499 (604)
Q Consensus       494 ~rrG~a  499 (604)
                      .-+.++
T Consensus       253 ~ik~ql  258 (269)
T PRK10941        253 MIRAQI  258 (269)
T ss_pred             HHHHHH
Confidence            544443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.23  E-value=0.2  Score=52.47  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ..-....|...++.||.+.|-..++..-..... ..-......+.|.+.+|+-.++|.+|...+++.+..||.   ++.+
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~---~~~a  288 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR---NAVA  288 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC---chhh
Confidence            334455666667777766666665532211100 001125667888888899999999999999999999999   8889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      -.+.|.|+..+|+..+|++..+.++...|..
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999886653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.18  E-value=0.26  Score=51.20  Aligned_cols=73  Identities=16%  Similarity=-0.079  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .+.-+++-|...+.-|+|++|+..++.+....|.++-..++.+.++.++++-+++++|+....+++++.|...
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            5788899999999999999999999999999998655689999999999999999999999999999977543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.10  E-value=0.096  Score=37.73  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALD  442 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALe  442 (604)
                      +.+.|+.+.+.|+|++|++.|.++|.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555555555555555555443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.08  E-value=0.076  Score=39.21  Aligned_cols=39  Identities=31%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116          129 HFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS  168 (604)
Q Consensus       129 ~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~  168 (604)
                      +....-+++|+||+|+.||+ --.=.=|+.|+.||++|++
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence            44556789999999999999 4455558899999999874

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.94  E-value=0.1  Score=37.52  Aligned_cols=28  Identities=11%  Similarity=0.026  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ||.++|.+|..+|+|++|+..|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3555666666666666666666665544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.90  E-value=0.32  Score=44.57  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCCCCC
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~eAI~D~~rALeLdPd~~~  488 (604)
                      ++..+|.+||+-+|++.....|...++.  .....++.--|.++.++..           .-.|++.+.++..+.|+   
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~--~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~---   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGED--ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD---   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCC--CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh---
Confidence            4678999999999999999999998872  1122666666777766542           44589999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+..+|.+|+=+-..-.|++++...+++|..
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            7777777777666666677777777777665

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.69  E-value=0.25  Score=42.73  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHH
Q 046116           80 EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVA  159 (604)
Q Consensus        80 ~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~  159 (604)
                      ||.+.|++.-...++.++           |..+-.++...+++.+-+.++-....++.|+||+|+++|.-. ..-=++.|
T Consensus         2 ~~~~~~~i~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a   69 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS-----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAA   69 (120)
T ss_pred             hHHHcCChHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHH
Confidence            456677777777776543           357778999999999998888888889999999999999975 45556789


Q ss_pred             HHHhhhhhhcccchHHHHhhHHHHHHHHHHHH
Q 046116          160 VRALGHLASHDKTFEAVALYEVEIIELAKNIA  191 (604)
Q Consensus       160 ~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~  191 (604)
                      +.+|+.|+....+-..+. +...+++.-+++-
T Consensus        70 ~~~L~~l~~~~~~~~~~~-~~~g~l~~l~~~l  100 (120)
T cd00020          70 LWALRNLAAGPEDNKLIV-LEAGGVPKLVNLL  100 (120)
T ss_pred             HHHHHHHccCcHHHHHHH-HHCCChHHHHHHH
Confidence            999999998765433332 1223444444443

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=0.3  Score=52.04  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=69.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L  503 (604)
                      +.+..+|+.||++.+--.+..|.     +-..++.+|.||+...+|..|-..+.+.-.+.|.   ..+-.+.-++.+++.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~-----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~---~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPR-----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE---LEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH---HHHHHHHHHHHHHHh
Confidence            45667888888888888888887     6778888899999999999999999988888888   777777778888888


Q ss_pred             CCHHHHHHHHHH
Q 046116          504 GLAKESLMDALT  515 (604)
Q Consensus       504 Gd~dEAL~d~~k  515 (604)
                      +.+.+|+.....
T Consensus        92 ~i~ADALrV~~~  103 (459)
T KOG4340|consen   92 CIYADALRVAFL  103 (459)
T ss_pred             cccHHHHHHHHH
Confidence            888888776443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.33  E-value=0.7  Score=50.30  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ..+.....+...|..-.|++||+.|++.|.-+|+     ...+-.++|.||.++.-|+-+-+..+--|+--|+   .+-|
T Consensus       150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-----y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA  221 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-----YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIA  221 (557)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-----hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHH
Confidence            3455566677778888999999999999999999     8999999999999999999999999999999999   8888


Q ss_pred             HHHHHHHHHHcC
Q 046116          493 LWRRSQAYDMMG  504 (604)
Q Consensus       493 ~~rrG~a~~~LG  504 (604)
                      ..-++-.++.+=
T Consensus       222 ~NLkacn~fRl~  233 (557)
T KOG3785|consen  222 KNLKACNLFRLI  233 (557)
T ss_pred             HHHHHHHHhhhh
Confidence            777777776653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.17  E-value=0.14  Score=34.99  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      +++++|.||.++|++++|+..++++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556667777777777777777777766665

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.11  E-value=0.12  Score=53.07  Aligned_cols=59  Identities=20%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      ..+++.++++.|.+.|.+|+++.|.     ...-|+..+....+.|+++.|..-+++.+++||+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~-----w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPE-----WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCch-----hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            3467889999999999999999999     9999999999999999999999999999999998

>smart00028 TPR Tetratricopeptide repeats

Probab=93.08  E-value=0.14  Score=32.53  Aligned_cols=32  Identities=38%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL  446 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~  446 (604)
                      ..+...|..++..|++++|+..|++++++.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35678899999999999999999999999885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.05  E-value=1.2  Score=54.99  Aligned_cols=98  Identities=8%  Similarity=-0.110  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCCCHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTMSSHSK  491 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~~~n~K  491 (604)
                      ...+......+.+.|++++|.+.|.+..+.....    +...|+.+...|.+.|++++|+..+++..+.  .|+    ..
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----~~  650 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG----TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EV  650 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HH
Confidence            3455556667777888888888888777764221    4677777778888888888888888877764  343    56


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .|..+..++...|++++|+..+.+..+.
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            7777778888888888888888887765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.78  E-value=4.7  Score=42.56  Aligned_cols=85  Identities=20%  Similarity=0.150  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 046116          427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLA  506 (604)
Q Consensus       427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~  506 (604)
                      .+++.+|.-.|.+.-+..|.     .+.+..-.|.|++.+++|++|......||.-+++   .+..+-++-.+-..+|.-
T Consensus       186 gek~qdAfyifeE~s~k~~~-----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPP-----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETLANLIVLALHLGKD  257 (299)
T ss_pred             chhhhhHHHHHHHHhcccCC-----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCC
Confidence            45799999999999996665     5899999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 046116          507 KESLMDALTFIGS  519 (604)
Q Consensus       507 dEAL~d~~kALkl  519 (604)
                      .++...+..-++.
T Consensus       258 ~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  258 AEVTERNLSQLKL  270 (299)
T ss_pred             hHHHHHHHHHHHh
Confidence            9999988877776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=92.78  E-value=0.72  Score=53.74  Aligned_cols=94  Identities=14%  Similarity=-0.037  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .+......+.+.|++++|.+.+...++....    .+...++.+...|.+.|++++|...+++..+  |    +..+|..
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~----d~~t~n~  396 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K----NLISWNA  396 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C----CeeeHHH
Confidence            3444445555555555555555555554311    1456666677777777777777777776543  2    4567888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +..+|...|+.++|++.|++..+.
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~  420 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAE  420 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888999999999999999988764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.56  E-value=1.4  Score=44.66  Aligned_cols=96  Identities=20%  Similarity=0.073  Sum_probs=71.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHHHcCCcH-------HHHHHHHHHHhcCCC---CCCCHH
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYLMLKKPE-------AAISDTTRALSLSKT---MSSHSK  491 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~ylkLgdy~-------eAI~D~~rALeLdPd---~~~n~K  491 (604)
                      +-....+++|++.|.-||-..-.  ......+.++...|-+|..+|+-+       .|+..+.+|++-...   +.....
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            33455789999999999875211  012246788888999999999944       466666666654433   122467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..|-+|..++.+|++++|+..|.+.+..
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            8999999999999999999999999998

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.54  E-value=1  Score=39.49  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116          434 VKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDA  513 (604)
Q Consensus       434 Ie~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~  513 (604)
                      +....++++.+|+     +....+.+|..++..|++++|++-+-.+++-+++.. ...+.-.+-.++..+|.-+.-...|
T Consensus         8 ~~al~~~~a~~P~-----D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen    8 IAALEAALAANPD-----DLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCCCChHHHHH
Confidence            4445555666666     566666666666666666666666666666655510 1334444444455555544444444


Q ss_pred             HH
Q 046116          514 LT  515 (604)
Q Consensus       514 ~k  515 (604)
                      ++
T Consensus        82 RR   83 (90)
T PF14561_consen   82 RR   83 (90)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.44  E-value=0.49  Score=41.28  Aligned_cols=59  Identities=17%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCccc----chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPLKMRK----ERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~~~~~----~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      ..+.|||.+|++.+.+..+....+...    .......|+|..+...|++++|+..+++|+++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            345667777777777776664431111    12334444555555555555555555555544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.79  E-value=4.5  Score=44.53  Aligned_cols=100  Identities=17%  Similarity=0.123  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+.--+...-+.||++.|=.+..+|-+..++.    ....+..|+...+..|++..|....+++++..|.   ++..
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~v  189 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEV  189 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHH
Confidence            34445555666667777777777777777774431    3555666788888888888888888888888888   8888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +--..++|...|++.+.+....+.-|.
T Consensus       190 lrLa~r~y~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         190 LRLALRAYIRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence            877888888888888777665555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=1.2  Score=48.22  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      +.....++---..+|-.|+...-...+.+.|.. +|+  -+...-++-..|.++...|-|++|.+.+++|+++||.   .
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d--lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~---D  208 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD--LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF---D  208 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC--CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc---c
Confidence            334556666677778888887777777777776 555  1223555666789999999999999999999999999   6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMD  512 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d  512 (604)
                      .-|..-.+.++.+.|++.|+.+.
T Consensus       209 ~Wa~Ha~aHVlem~~r~Keg~eF  231 (491)
T KOG2610|consen  209 CWASHAKAHVLEMNGRHKEGKEF  231 (491)
T ss_pred             hHHHHHHHHHHHhcchhhhHHHH
Confidence            66666666666666666666544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.51  E-value=1.4  Score=38.70  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          471 AAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       471 eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+..++++++.+|+   +..+.|.+|..+...|++++|+..+...++..+.
T Consensus         6 ~~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    6 PDIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             ccHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            457788999999999   9999999999999999999999999999999554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.48  E-value=0.81  Score=39.91  Aligned_cols=64  Identities=14%  Similarity=0.025  Sum_probs=52.0

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          461 QCYLMLKKPEAAISDTTRALSLSKTMS------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       461 ~~ylkLgdy~eAI~D~~rALeLdPd~~------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .-.++.|+|.+|++.+.+.+.......      ...-+...+|.++...|++++|+..+++++++-....
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            445788999999999999987754421      1356889999999999999999999999999955433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.44  E-value=0.89  Score=51.09  Aligned_cols=89  Identities=15%  Similarity=0.026  Sum_probs=77.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHcC
Q 046116          426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT-MSSHSKSLWRRSQAYDMMG  504 (604)
Q Consensus       426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd-~~~n~KA~~rrG~a~~~LG  504 (604)
                      ...+.+.|.+.........|+     .+..+...|..+...|+.++|+..+++++...+. .+.+.-.+|.+|.++..++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~-----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPN-----SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence            356778999999999999999     8999999999999999999999999999965544 1234557999999999999


Q ss_pred             CHHHHHHHHHHHHhc
Q 046116          505 LAKESLMDALTFIGS  519 (604)
Q Consensus       505 d~dEAL~d~~kALkl  519 (604)
                      +|++|...|.+..+.
T Consensus       320 ~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKE  334 (468)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999998886

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03077 Protein ECB2; Provisional

Probab=91.28  E-value=1.6  Score=52.18  Aligned_cols=97  Identities=9%  Similarity=-0.093  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ....|....+.+.+.|+.++|++.|++.++.  .|+      ...|...-.++.+.|++++|...++...+..+- .++.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-~P~~  625 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-TPNL  625 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-CCch
Confidence            4556778888899999999999999998874  565      455555666788999999999999988743221 1246


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTF  516 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kA  516 (604)
                      +.|.-+..++...|++++|.+.+++.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            88888999999999999999887764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.08  E-value=1.3  Score=49.93  Aligned_cols=204  Identities=18%  Similarity=0.060  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhh---hhccccCccc--cccHHHHHH
Q 046116          310 WQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQD---YHKVKYGNLK--LKSKKAGRA  384 (604)
Q Consensus       310 wq~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~d---y~~ik~g~L~--~~~~~~~~a  384 (604)
                      -.-.+.+|++.++---.| | ..+++.-+|.=|.++...+.....|+.+...-...   ++....+.+.  +..+-...+
T Consensus       135 ~~~aa~v~~l~~~l~~~t-~-q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~yk  212 (696)
T KOG2471|consen  135 SSSAASVTLLSDLLAAET-S-QCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYK  212 (696)
T ss_pred             HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhh
Confidence            344556666664322222 2 24677777877888888888777775554322111   0000001000  000000001


Q ss_pred             HH---HHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC---CcccchHHHHH
Q 046116          385 LD---EIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKA-LDLCPL---KMRKERIVLYS  457 (604)
Q Consensus       385 L~---el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkA-Lel~P~---~~~~~~a~l~~  457 (604)
                      ..   ...+++.-.++....|..     ....+..+.-+.+..|-.|+|..|.+..... |...|.   ...-..-.+++
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~-----a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N  287 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNI-----AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN  287 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhh-----cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence            11   112222111111112211     1135677888899999999999999876543 222232   00011345669


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHh---------cCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          458 NRAQCYLMLKKPEAAISDTTRALS---------LSKT------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       458 NRA~~ylkLgdy~eAI~D~~rALe---------LdPd------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      |++-++++++.|..++-.+.+||+         +.|.      .+.....+|+.|..|...|+.-.|.+.|.++...+
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999996         2232      12357789999999999999999999999999874

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.02  E-value=2.6  Score=43.92  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------------CcccchHHHHHHHHHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------------------KMRKERIVLYSNRAQCYL  464 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------------------~~~~~~a~l~~NRA~~yl  464 (604)
                      .....+.+..+...|+..+|+......+.....                             ......+.++..+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            456667778888888888888888888872111                             112334556666666666


Q ss_pred             Hc------CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhc
Q 046116          465 ML------KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK-----------------ESLMDALTFIGS  519 (604)
Q Consensus       465 kL------gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d-----------------EAL~d~~kALkl  519 (604)
                      .+      +++++++..++.|++++|+   +.++|+..|..+..+-+.+                 .|+..|-+++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~  338 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPS---WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL  338 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            66      7888899999999999999   9999999999887764333                 356666666666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.80  E-value=0.76  Score=36.68  Aligned_cols=32  Identities=6%  Similarity=-0.029  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+|.+|.+++++|+|++|+..+..+|+..|+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~   33 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD   33 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            35789999999999999999999999999443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.74  E-value=4.9  Score=45.47  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      +..+.-....|..-|.=--.++++..|-..|.+||+.+..     +..+|..-|.+-++.+....|-...++|+.+-|. 
T Consensus        66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-  139 (677)
T KOG1915|consen   66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-  139 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence            3334445677888888888999999999999999999988     8999999999999999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                        --+.+|.--..-..+|+...|.+.|.+-++..|
T Consensus       140 --VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P  172 (677)
T KOG1915|consen  140 --VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP  172 (677)
T ss_pred             --HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence              889999999999999999999999999998833

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=90.45  E-value=2.1  Score=51.04  Aligned_cols=132  Identities=17%  Similarity=0.076  Sum_probs=90.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      -+..-+...-...-.|-.+++.|++++|..+....=..-|+     +-..+.-.-.||..++++++|...|.+++.-+|+
T Consensus        35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            34455666677778888899999999998544333333344     5666777788999999999999999999999887


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKS  554 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~r  554 (604)
                          .+-++.+=.+|...++|.+--+.--+..+..|        +-.+++..++.-+++....+.+...
T Consensus       110 ----eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--------k~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen  110 ----EELLYHLFMAYVREKSYKKQQKAALQLYKNFP--------KRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------cccchHHHHHHHHHHhccCCccccc
Confidence                45566666777777777655544444444433        3456778887777776554444333

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=1.2  Score=46.84  Aligned_cols=73  Identities=21%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          449 RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       449 ~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ......+..|.=..|...++++.|..+..+.+.++|.   .+...--||-+|.++|.+.-|+.|+..+++.+|+..
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            3445667777788999999999999999999999999   888888999999999999999999999999987533

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=90.05  E-value=0.49  Score=33.86  Aligned_cols=38  Identities=29%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             HHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116          130 FAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS  168 (604)
Q Consensus       130 ~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~  168 (604)
                      -+..-++.|+||+|++||.. -..--|+.|+.||+.|++
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence            34556799999999999983 467779999999998863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.71  E-value=4.4  Score=42.15  Aligned_cols=107  Identities=19%  Similarity=0.054  Sum_probs=82.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC---CC------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116          409 ENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLC---PL------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTR  478 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~---P~------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r  478 (604)
                      .....+..+.+-|..+++++ +|++|+...++|.++.   +.      +..+....++..++.+|+..+.++.... |..
T Consensus        30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~  108 (278)
T PF08631_consen   30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALN  108 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHH
Confidence            44567889999999999999 9999999999999984   11      2335678889999999999998765444 455


Q ss_pred             HHhc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          479 ALSL----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       479 ALeL----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++++    -|+   ++..++-.=.++...++.+++.+.+.+.+..
T Consensus       109 ~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  109 ALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            4443    355   6666655556666688889888888888876

It is also involved in sporulation [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.68  E-value=0.62  Score=33.16  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      ..+.|+|.+|..+|+|++|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34455555555555555555555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.39  E-value=4.6  Score=42.63  Aligned_cols=95  Identities=12%  Similarity=-0.056  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML----KKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL----gdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .--.-+.+.+..+++-|.....+..+++.+       ..+..+|.++.++    +++.+|.-.|..--+--|.   .+..
T Consensus       140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~l  209 (299)
T KOG3081|consen  140 AALNVQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLL  209 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHH
Confidence            334445566666777777777777777655       5666778888776    4678888888887774555   6888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +...+.|+..+|+|+||...++.+|..++
T Consensus       210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  210 LNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999844

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.37  E-value=3.9  Score=46.22  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      .-+..|..-+.-..++.+...|-.....||-.||.      ..++-.--..-+++++++.+-..|.+-|+.+|.   +-.
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c~  472 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NCY  472 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hhH
Confidence            35666777777788888999999999999999997      555555566778889999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++..-|..-..+|+.+.|...|.-|+..
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            9999999999999999999999988876

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.12  E-value=9.4  Score=39.84  Aligned_cols=130  Identities=11%  Similarity=-0.080  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116          414 VFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---  488 (604)
Q Consensus       414 A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---  488 (604)
                      +...+..|..+-.. .+++.||.+|.+|-+....+ .....-.++..-|.---.+++|.+||..+.++..-.-+++.   
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            33444445544444 68999999999999985441 11123345555566666789999999999998865544211   


Q ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          489 HSKS-LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       489 n~KA-~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                      ..|- +++-|.||+..++.--+...+++..+++|.-.+....+....+...+..+.
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d  248 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD  248 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence            2344 456688999889999999999999999776655444444444444444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=89.03  E-value=6.1  Score=47.39  Aligned_cols=91  Identities=16%  Similarity=0.059  Sum_probs=71.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116          424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L  503 (604)
                      ....++|..|+...++.+...|+     ...+....|..++++|++++|....+..-.+.++   ....+--+-.+|..+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDL   90 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHH
Confidence            44567888999999999999998     6777777788999999999999544444444555   666777788899999


Q ss_pred             CCHHHHHHHHHHHHhchhh
Q 046116          504 GLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       504 Gd~dEAL~d~~kALkl~~~  522 (604)
                      |++++|...|++++...|+
T Consensus        91 ~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   91 GKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             hhhhHHHHHHHHHHhhCCc
Confidence            9999999999999988554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.82  E-value=4.8  Score=44.55  Aligned_cols=97  Identities=18%  Similarity=0.039  Sum_probs=81.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116          422 NQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ  498 (604)
Q Consensus       422 N~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~  498 (604)
                      ......|+++.|+++.+...+.   .++..+...+.++.-+|...+.. +...|..+..++++|.|+   ...+-.--+.
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pd---lvPaav~AAr  271 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPD---LVPAAVVAAR  271 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCc---cchHHHHHHH
Confidence            3456889999999998877653   55555556788888888777665 489999999999999999   9999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhchhh
Q 046116          499 AYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       499 a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +++..|+...+-..++.+-+..|+
T Consensus       272 alf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         272 ALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHhccchhhhhhHHHHHHhcCCC
Confidence            999999999999999999998654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.75  E-value=0.99  Score=32.10  Aligned_cols=31  Identities=26%  Similarity=0.223  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLC  444 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~  444 (604)
                      +..+.+.|+.++..|+|++|+..+.+++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            5678899999999999999999999999874

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.32  E-value=22  Score=40.64  Aligned_cols=63  Identities=11%  Similarity=-0.071  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116          453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF  516 (604)
Q Consensus       453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA  516 (604)
                      .-+...+|+|.-++|+.++||+.++..++..|. ..+...++++..++..++.|.++...+.+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            445566799999999999999999999998875 226778999999999999999887776654

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.80  E-value=5.3  Score=41.56  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-----
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT-----  485 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd-----  485 (604)
                      ...+..+...+..+-+.|+++.|.....++....+. .....+.+....|......|+..+|+...+..+.-...     
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~-~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS-SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            346678899999999999999999999999998754 12225677778899999999999999999888871100     


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhchhh
Q 046116          486 --------------------------MSSHSKSLWRRSQAYDMM------GLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       486 --------------------------~~~n~KA~~rrG~a~~~L------Gd~dEAL~d~~kALkl~~~  522 (604)
                                                .....++++.+|.-...+      +..++++..|+++++.++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence                                      011456788888888888      8889999999999999553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.45  E-value=0.77  Score=47.40  Aligned_cols=60  Identities=13%  Similarity=0.014  Sum_probs=55.1

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          461 QCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       461 ~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ....+-++.+.|.+.+.+|+++-|.   +...|+|.|.-..+-|+++.|.+.|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3456778999999999999999999   99999999999999999999999999999997654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.38  E-value=58  Score=37.03  Aligned_cols=224  Identities=13%  Similarity=0.019  Sum_probs=124.1

Q ss_pred             HHHhHhhhhhccccCCCCCccchhHHHh------hHHHHHHHHHhhcCCchhhHHHHHHHHHhhcCcchHHHHH----HH
Q 046116          265 DFLKIVCGMWGGLANHTSPAGIGLIRAF------LKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVI----DI  334 (604)
Q Consensus       265 ~~~~~~~~~w~~l~~~~sp~g~g~~~~~------~~~~~~~lc~~~rssd~wq~~~idcll~Ll~dr~T~y~al----gk  334 (604)
                      .|+-++-.||+-  ..++|---=++.++      .++-+-.+||.-=++.      |.+|..-+-++...-+..    +.
T Consensus       242 ~~~mq~l~~We~--~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~------i~~Lke~li~~F~~~Ls~~Vk~~~  313 (549)
T PF07079_consen  242 PPLMQILENWEN--FYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSK------IEKLKEELIDRFGNLLSFKVKQVQ  313 (549)
T ss_pred             cHHHHHHHHHHh--hccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            477899999953  23445444455555      5666677888544332      333333333332221111    22


Q ss_pred             HHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHH
Q 046116          335 AALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSV  414 (604)
Q Consensus       335 a~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A  414 (604)
                      +..|=+=|+-|.-+.|+..+++.+... ....+.+     -..+......++...++.. . .....+      .+...+
T Consensus       314 T~~a~q~l~lL~~ldp~~svs~Kllls-~~~lq~I-----v~~DD~~~Tklr~yL~lwe-~-~qs~Di------DrqQLv  379 (549)
T PF07079_consen  314 TEEAKQYLALLKILDPRISVSEKLLLS-PKVLQDI-----VCEDDESYTKLRDYLNLWE-E-IQSYDI------DRQQLV  379 (549)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhhhcC-HHHHHHH-----HhcchHHHHHHHHHHHHHH-H-HHhhcc------cHHHHH
Confidence            333334455566666666666555211 1111111     1111122333444444431 1 011111      233456


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC--------------------------------------c---ccch
Q 046116          415 FMLKQQGNQEFWAGY-IEEAVKKYSKALDLCPLK--------------------------------------M---RKER  452 (604)
Q Consensus       415 ~~lk~~GN~lfk~Gd-yeeAIe~YtkALel~P~~--------------------------------------~---~~~~  452 (604)
                      ..+..-+..+.+.|. -++|++....++...|..                                      .   .--+
T Consensus       380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e  459 (549)
T PF07079_consen  380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE  459 (549)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence            666667777777776 566776666666554430                                      0   0001


Q ss_pred             HHHHHH--HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116          453 IVLYSN--RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL  514 (604)
Q Consensus       453 a~l~~N--RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~  514 (604)
                      ..+-+-  =|.-.+..|+|.++..++.=..+++|.    +.+|--+|.+++...+|+||...+.
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            122222  255667889999999999999999997    8999999999999999999998854

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.18  E-value=10  Score=37.09  Aligned_cols=87  Identities=10%  Similarity=-0.150  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+.+........++.+++...+...--+.|.     .+.+-.--|..++..|+|.+|+..++.+..-.|.   .+-+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~---~p~~   80 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPG---FPYA   80 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---ChHH
Confidence            4667888888888999999999999988889999     8888888899999999999999999998777776   4433


Q ss_pred             HHHHHHHHHHcCCHH
Q 046116          493 LWRRSQAYDMMGLAK  507 (604)
Q Consensus       493 ~~rrG~a~~~LGd~d  507 (604)
                      ---++.|++.+|+.+
T Consensus        81 kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   81 KALLALCLYALGDPS   95 (160)
T ss_pred             HHHHHHHHHHcCChH
Confidence            334588999999864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.85  E-value=2.5  Score=44.70  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116          430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKES  509 (604)
Q Consensus       430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEA  509 (604)
                      |.+=+....++++-       ....++..++..+...++++.+++..++-+.++|-   +-++|.++-.+|+..|+...|
T Consensus       137 f~~WV~~~R~~l~e-------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~a  206 (280)
T COG3629         137 FDEWVLEQRRALEE-------LFIKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAA  206 (280)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHH
Confidence            45555555555443       36789999999999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 046116          510 LMDALTFIGS  519 (604)
Q Consensus       510 L~d~~kALkl  519 (604)
                      +..|+..-+.
T Consensus       207 i~~y~~l~~~  216 (280)
T COG3629         207 IRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHH
Confidence            9999998886

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=86.37  E-value=4.7  Score=42.07  Aligned_cols=103  Identities=12%  Similarity=-0.021  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          412 LSVFMLKQQGNQEFW-AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk-~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .....+...|...+. .++.+.|...|..++...|.     +..+|..-..-++++++.+.|-..+++++..-|.   ..
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~  104 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DPDFWLEYLDFLIKLNDINNARALFERAISSLPK---EK  104 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hh
Confidence            456677788888777 56667799999999999998     7888888888888999999999999999987666   33


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          491 ---KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       491 ---KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                         ..|-+...--...|+.+...+.++++.+..+.
T Consensus       105 ~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  105 QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence               35556677777888888888888888888554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=85.32  E-value=4.7  Score=45.75  Aligned_cols=93  Identities=13%  Similarity=0.014  Sum_probs=64.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-------CCC---------
Q 046116          422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-------SKT---------  485 (604)
Q Consensus       422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-------dPd---------  485 (604)
                      +.+.+..+.+.-|+.-.+||+++|+     -+.+|.-+|.=  ......+|...+++|++.       +..         
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pd-----CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e  248 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPD-----CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE  248 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhh-----hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence            3456678899999999999999998     66666655441  111234455555555432       211         


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          486 ------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       486 ------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                            .+...-+-.|+|.|..++|+.+||++.++..++..|
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p  290 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP  290 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence                  011244567889999999999999999999999855

The molecular function of this protein is uncertain.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=84.90  E-value=74  Score=40.66  Aligned_cols=101  Identities=16%  Similarity=-0.057  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .+......|-+.++|++|.+.|+.-++..-+     ....|...+..++..++-++|-.-+.+||+--|. ..|.+..-.
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Isk 1605 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISK 1605 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHH
Confidence            4444455555555555555555555555444     4555555555555555555555555555555554 224444555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      -|+.-++.|+.+.+...|+-.+...|+
T Consensus      1606 fAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence            555555555555555555555555433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=84.83  E-value=11  Score=39.32  Aligned_cols=99  Identities=16%  Similarity=-0.081  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      |....+..-+.+..+.|-..|.+|+.-.+.     ...+|..-|..-.. .++.+.|...++.+++.-|.   +...+..
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~   75 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC-----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence            444445555555588889999999855444     56778877877566 45666699999999999998   8888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          496 RSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       496 rG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      -..-+..+|+.+.|...|++++...+..
T Consensus        76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   76 YLDFLIKLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence            8888889999999999999998875443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=84.68  E-value=5.5  Score=41.93  Aligned_cols=75  Identities=19%  Similarity=0.117  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      -..+.=+.+...++++.|...-.+.|.++|.     ++.-+.-||.+|.++|.+.-|++|+...++.-|+   .+.+-.-
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~-----dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~---~~~a~~i  254 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPE-----DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD---DPIAEMI  254 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCC-----ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC---chHHHHH
Confidence            3344456677889999999999999999999     8888899999999999999999999999999999   5555444


Q ss_pred             HHH
Q 046116          496 RSQ  498 (604)
Q Consensus       496 rG~  498 (604)
                      +.+
T Consensus       255 r~~  257 (269)
T COG2912         255 RAQ  257 (269)
T ss_pred             HHH
Confidence            433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.49  E-value=3.7  Score=39.32  Aligned_cols=75  Identities=12%  Similarity=-0.023  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          415 FMLKQQGNQEFWAG---YIEEAVKKYSKALD-LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       415 ~~lk~~GN~lfk~G---dyeeAIe~YtkALe-l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +...+.+-.+....   +..+-|..+...++ -.|.    ..-.+.+.+|..|.++++|+.++.+++..|+.+|+   |.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~----~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~---n~  105 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE----RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN---NR  105 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc----cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC---cH
Confidence            34445555555443   35677888888886 3444    35667777889999999999999999999999998   77


Q ss_pred             HHHHHH
Q 046116          491 KSLWRR  496 (604)
Q Consensus       491 KA~~rr  496 (604)
                      .|.--.
T Consensus       106 Qa~~Lk  111 (149)
T KOG3364|consen  106 QALELK  111 (149)
T ss_pred             HHHHHH
Confidence            765433

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.35  E-value=20  Score=40.02  Aligned_cols=104  Identities=18%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CC-CCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS----KT-MSS  488 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd----Pd-~~~  488 (604)
                      =..+.+.|..+...|+++.|+..|.++-++|..  .+.-...+.|.-.+-+-+|+|..-.....+|.+--    .- ..-
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs--~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v  227 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS--AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEV  227 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc--hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence            346778899999999999999999999999876  33456677788888899999999999999887651    11 112


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++...--|.++..+++|..|...|..+..-
T Consensus       228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~  258 (466)
T KOG0686|consen  228 PAKLKCAAGLANLLLKKYKSAAKYFLLAEFD  258 (466)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4566777799999999999999988766544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.39  E-value=4.5  Score=46.74  Aligned_cols=92  Identities=15%  Similarity=0.057  Sum_probs=78.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 046116          425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG  504 (604)
Q Consensus       425 fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG  504 (604)
                      --+|+..+|+.+|..|+-+.|.  .. .-..+.-+|.++.++|.-.+|--.+..|+.-.|.   .+.-+|-+++++.++|
T Consensus       224 R~~G~~~~A~~Ca~~a~hf~~~--h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~---~t~n~y~l~~i~aml~  297 (886)
T KOG4507|consen  224 RIKGEPYQAVECAMRALHFSSR--HN-KDIALLSLATVLHRAGFSADAAVILHAALDDADF---FTSNYYTLGNIYAMLG  297 (886)
T ss_pred             HHcCChhhhhHHHHHHhhhCCc--cc-ccchhhhHHHHHHHcccccchhheeehhccCCcc---ccccceeHHHHHHHHh
Confidence            3568999999999999999887  11 2344555899999999999999999999998888   7777999999999999


Q ss_pred             CHHHHHHHHHHHHhchhh
Q 046116          505 LAKESLMDALTFIGSRMK  522 (604)
Q Consensus       505 d~dEAL~d~~kALkl~~~  522 (604)
                      +|..++..|..+.+..+.
T Consensus       298 ~~N~S~~~ydha~k~~p~  315 (886)
T KOG4507|consen  298 EYNHSVLCYDHALQARPG  315 (886)
T ss_pred             hhhhhhhhhhhhhccCcc
Confidence            999999999999988443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.37  E-value=4.6  Score=40.86  Aligned_cols=62  Identities=18%  Similarity=0.115  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116          433 AVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM  502 (604)
Q Consensus       433 AIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~  502 (604)
                      |+.+|.+|+.+.|.     ....|+.+|..+...|+.-+|+-.|-+++.....   +..|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~-----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P---f~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS-----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP---FPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT-----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC-----CCCcccchhhhhccccchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHH
Confidence            78899999999999     8999999999999999999999999999987766   78888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=82.30  E-value=2  Score=48.59  Aligned_cols=86  Identities=19%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--------CCC----cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALD-LC--------PLK----MRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL  480 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALe-l~--------P~~----~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL  480 (604)
                      ...+.+.|-..|+.|.|..++..|.+||. .|        |..    ...-...+.+|.+..|+..|++-.|...+.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            44568999999999999999999999996 22        220    111257799999999999999999999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHH
Q 046116          481 SLSKTMSSHSKSLWRRSQAYDM  502 (604)
Q Consensus       481 eLdPd~~~n~KA~~rrG~a~~~  502 (604)
                      ..--.   ++..|.|+|.|..+
T Consensus       363 ~vfh~---nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  363 HVFHR---NPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhc---CcHHHHHHHHHHHH
Confidence            98888   89999999998765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.52  E-value=2  Score=32.06  Aligned_cols=30  Identities=3%  Similarity=-0.230  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ..|.++|.+-...++|++|+.||++||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999883

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=81.40  E-value=21  Score=34.36  Aligned_cols=86  Identities=10%  Similarity=-0.005  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHcCC---cHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCC
Q 046116          452 RIVLYSNRAQCYLMLKK---PEAAISDTTRALS-LSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTN  527 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgd---y~eAI~D~~rALe-LdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~  527 (604)
                      .....+|.|.++.+..+   ..+.|..+...++ -+|.  ..-.-.|.++..++.+++|+.|+...+..++..|     +
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~-----~  103 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP-----N  103 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC-----C
Confidence            36777888888887764   5678888888887 4444  2556788899999999999999999999999933     2


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 046116          528 RVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       528 ~~~i~~~l~rlikKqk~~  545 (604)
                      | .-...+.+.+.+.+.+
T Consensus       104 n-~Qa~~Lk~~ied~itk  120 (149)
T KOG3364|consen  104 N-RQALELKETIEDKITK  120 (149)
T ss_pred             c-HHHHHHHHHHHHHHhh
Confidence            3 2333455555554444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=81.32  E-value=29  Score=43.97  Aligned_cols=100  Identities=15%  Similarity=-0.062  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...|...-|....-|.-+.-.+.|.+|.+++..      ...|..++-.|.+-+++++|.+.++..++--..   -.+.|
T Consensus      1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW 1567 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVW 1567 (1710)
T ss_pred             HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHH
Confidence            334444445555556777788899999999865      688999999999999999999999999987777   78899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+.|..++...+.+.|...+.+||+..|+
T Consensus      1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            99999999999999999999999999776

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.63  E-value=2  Score=32.00  Aligned_cols=30  Identities=27%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      .+|..+|.+.+..++|++|+.|+.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            457778888888888999999999888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	604
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		6e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-04

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK+QGN+ F      EA   Y +A+   PL       V Y+NRA CYL +++PE A++D 
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRALCYLKMQQPEQALADC 61
Query: 477 TRA 479
            RA
Sbjct: 62  RRA 64

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK+QGN+ F      EA   Y +A+   PL       V Y+NRA CYL +++PE A++D 
Sbjct: 12  LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADC 66
Query: 477 TRA 479
            RA
Sbjct: 67  RRA 69

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKAL--DLCPLKMRKERIVLYSNRAQCYLMLKKPE 470
           SV  L+++GN+ F  G    A+  Y++AL  D  P    +++ VL+ NRA C+L L+  +
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP----QDQAVLHRNRAACHLKLEDYD 82
Query: 471 AAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
            A ++ ++A              +RRSQA + +G   ++++D
Sbjct: 83  KAETEASKA---IEKDGGDVKALYRRSQALEKLGRLDQAVLD 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-20
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-20
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 98.2 bits (245), Expect = 3e-24
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC 462
                     SV  L+++GN+ F  G    A+  Y++AL L      +++ VL+ NRA C
Sbjct: 17  EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--QDQAVLHRNRAAC 74

Query: 463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           +L L+  + A ++ ++A+          K+L+RRSQA + +G   ++++D
Sbjct: 75  HLKLEDYDKAETEASKAIEKD---GGDVKALYRRSQALEKLGRLDQAVLD 121

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 91.7 bits (228), Expect = 8e-22
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 12/115 (10%)

Query: 398 KEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYS 457
           +++  +D  +K  E     LK Q N  F A   E A+K YS+A++L P        + Y 
Sbjct: 1   RDEPPADGALKRAE----ELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYG 51

Query: 458 NRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           NR+  YL  +    A+ D TRA+ L K    + K  +RR+ +   +G  + +L D
Sbjct: 52  NRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRD 103

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 89.0 bits (221), Expect = 6e-21
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP-------------LKM 448
            ++++  +   SV  L+Q+GN+ F     +EA+  Y  AL                 +++
Sbjct: 2   NAEDDKLK---SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL 58

Query: 449 RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKE 508
            ++ I LY+N +QCYL +     A   ++  L   +   ++ K+L+RR++A        E
Sbjct: 59  DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE---TNEKALFRRAKARIAAWKLDE 115

Query: 509 SLMD 512
           +  D
Sbjct: 116 AEED 119

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK+QGN+ F      EA   Y +A+   P        V Y+NRA CYL +++PE A++D 
Sbjct: 12  LKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADC 66

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            RAL L        K+ +   Q    M    E++ +
Sbjct: 67  RRALELD---GQSVKAHFFLGQCQLEMESYDEAIAN 99

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            + +G + F       AVK Y++ +   P     E    YSNRA     L     AI+D 
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADC 61

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +A+          ++  R++ A   +     +L  
Sbjct: 62  NKAIEKDPN---FVRAYIRKATAQIAVKEYASALET 94

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 393 VQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKER 452
           +          + ++         +K +GN+ F  G   +A+K Y++A+   P     + 
Sbjct: 1   MGHHHHHHSHMNPDLALM------VKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KD 49

Query: 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             LYSNRA CY  L + + A+ D    + L  T     K   R++ A + M    +++  
Sbjct: 50  AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDV 106

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 84.6 bits (210), Expect = 8e-20
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            K +GN+ F  G    A++ Y++A+   P     E  +LYSNRA C   L + + A+ D 
Sbjct: 16  EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDC 70

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
              + L        K   R++     M    ++   
Sbjct: 71  DTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRA 103

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK++GN+    G I++A++ YS+A+ L P        VLYSNR+  Y      + A  D 
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            + + L        K   R++ A + +   +E+   
Sbjct: 62  CKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRT 94

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 86.0 bits (213), Expect = 2e-19
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 390 DLKVQKRKKEKL-MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP--- 445
           +L  Q  KK     +DEE  +   S F +K++GN+ F    I EA+ KY +ALD      
Sbjct: 16  NLYFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72

Query: 446 --------LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS 497
                    K +   I    N A CY   K    AI   ++ L + K    + K+L++  
Sbjct: 73  EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLG 129

Query: 498 QAYDMMGLAKESLMD 512
            A    G  +E+  +
Sbjct: 130 VANMYFGFLEEAKEN 144

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 353 RVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENEL 412
             GE     L   Y     G  K +         E+     +K K+   M+ EE  E   
Sbjct: 89  EKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLE--- 145

Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----------KMRKERIVLYSNRAQC 462
              ++K++G   F  G  ++A+ +Y K +               K +  R+  + N A C
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205

Query: 463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG---LAKESLMDALT 515
           +L L+   AAI    +AL L     ++ K L RR +A+  +    LA+      L 
Sbjct: 206 HLKLQAFSAAIESCNKALELDS---NNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 86.9 bits (215), Expect = 4e-19
 Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK+QGN+ F      EA   Y +A+   P        V Y+NRA CYL +++PE A++D 
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADC 61

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAA 536
            RAL L        K+ +   Q    M    E++ +         + +      IP  +A
Sbjct: 62  RRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP--SA 116

Query: 537 VMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRRRKLEKARRKKKEVN 587
           + I K+            +  +      +L+     R   E  R  +   +
Sbjct: 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 83.2 bits (206), Expect = 7e-19
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK +GN         +A+  Y++AL + P        +  SNRA  Y    + E A  D 
Sbjct: 14  LKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDA 68

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             A  +      +SK+  R   A   M   K +   
Sbjct: 69  ELATVVDPK---YSKAWSRLGLARFDMADYKGAKEA 101

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.9 bits (203), Expect = 9e-19
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ 461
           +  EE          LK +GN++      E AV  Y KA++L P        V + NRA 
Sbjct: 3   LGSEEDSAEAER---LKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAA 54

Query: 462 CYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            Y  L     A+ D  RA+ +      +SK+  R   A   +    E++  
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPA---YSKAYGRMGLALSSLNKHVEAVAY 102

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            K+QGN  F  G   EAV  Y + +   P     +  V YSN+A   + L +   AI   
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLITAQP-----QNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            + L  +   S+      R    Y  + LA+ ++  
Sbjct: 62  QQGLRYT---STAEHVAIRSKLQY-RLELAQGAVGS 93

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            K+ GN  +     + A+K Y KA +L P       +   +N+A  Y             
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 477 TRALSL----SKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +A+ +     +     +K+  R   +Y      K+++  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            K  GN  +     E+A   Y KA++L P       I  Y+N+A  Y   KK    +   
Sbjct: 11  EKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFC 65

Query: 477 TRALSL----SKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +A+ +           +K++ R   A+        ++  
Sbjct: 66  EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 431 EEAVKKYSKALDLCP--LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485
            E V+   KA+++        K      S     +        A+    R+LS  + 
Sbjct: 59  AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 386 DEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP 445
            E+  +   + K+ K  SD  ++E   +    K  GN  F    +EEA+++Y  A+    
Sbjct: 151 YEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210

Query: 446 L------------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493
                             +   + N A C + LK+ + AI      L+  +    + K+L
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKAL 267

Query: 494 WRRSQAYDMMG---LAKESLMDALT 515
           +RR +A   +G    A++    A  
Sbjct: 268 FRRGKAKAELGQMDSARDDFRKAQK 292

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 22/139 (15%)

Query: 397 KKEKLMSDEEMKENELSVFM-----LKQQGNQEFWAGYIEEAVKKYSKA---LDLCP--- 445
                  D ++   ++   +     LK  GN  F +   E A+KKY+K    ++      
Sbjct: 201 SHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA 260

Query: 446 -----LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY 500
                 K++   +    N   C L +   + A+     AL +     S++K+L+RR+Q +
Sbjct: 261 EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP---SNTKALYRRAQGW 317

Query: 501 DMMG---LAKESLMDALTF 516
             +     A   L  A   
Sbjct: 318 QGLKEYDQALADLKKAQEI 336

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK Q N  F A   E A+K YS+A++L P        + Y NR+  YL  +    A+ D 
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           TRA+ L K      K  +RR+ +   +G  + +L D
Sbjct: 64  TRAIELDKKY---IKGYYRRAASNMALGKFRAALRD 96

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 75.1 bits (184), Expect = 2e-14
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 353 RVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENEL 412
           +  E     L   Y    +G             + I+++ ++  +K K   + + KE   
Sbjct: 210 QREEQCILYLGPRYG---FGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLE 266

Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----------KMRKERIVLYSNRAQC 462
              ++K++G   F  G   +AV +Y K +    +                +  + N A C
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG---LAKESLMDALT 515
           YL L++   A+    +AL L      + K L+RR +A  +M     AK      L 
Sbjct: 327 YLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 7e-13
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK +GNQ F     ++A+K Y+ AL+L          V YSN + CY+ +   +  +  +
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKE------DPVFYSNLSACYVSVGDLKKVVEMS 62

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           T+AL L      +SK L RR+ A + +G   +++ D
Sbjct: 63  TKALELK---PDYSKVLLRRASANEGLGKFADAMFD 95

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 371 YGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYI 430
             NL  +S ++    DE +    +  +++   ++E+ K  E     L+  G  +F     
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253

Query: 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490
             A +   KA++L P      R+  Y   A             +   +AL L    S++S
Sbjct: 254 LGAHEDIKKAIELFP------RVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNS 304

Query: 491 KSLWRRSQAYDMMGLAKESLMD 512
              + R Q   ++    ++  D
Sbjct: 305 SVYYHRGQMNFILQNYDQAGKD 326

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP 469
               +        +        EA     KA  L P              AQ  L  +  
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDI 465

Query: 470 EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           + AI+    +  L++TM    +++      +      ++ +  
Sbjct: 466 DEAITLFEESADLARTMEEKLQAI-----TFAEAAKVQQRIRS 503

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 6/151 (3%)

Query: 364 QDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQ 423
           Q   + K     L S  +  +   I+  ++     ++    ++   N LS    +   + 
Sbjct: 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205

Query: 424 EFWAGYIEEAVKKYSKALDLCP--LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481
           +       +A + + + LD      K++++  +   +      +   P  A  D  +A+ 
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265

Query: 482 LSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           L   ++S+       +        + E    
Sbjct: 266 LFPRVNSYIY----MALIMADRNDSTEYYNY 292

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 15/97 (15%)

Query: 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475
           ++  + +         E    + KAL L           +Y +R Q   +L+  + A  D
Sbjct: 279 IMADRND-------STEYYNYFDKALKLDS-----NNSSVYYHRGQMNFILQNYDQAGKD 326

Query: 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             +A  L      +     + +          +    
Sbjct: 327 FDKAKELD---PENIFPYIQLACLAYRENKFDDCETL 360

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
           Q     +     ++    +S+A    P     E   + +  A+        + A+     
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFFAEILTDKNDFDKALKQYDL 397

Query: 479 ALSL 482
           A+ L
Sbjct: 398 AIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482
              ++A K + KA +L P     E I  Y   A       K +   +  + A   
Sbjct: 318 QNYDQAGKDFDKAKELDP-----ENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
             + G +   AG + +A+ ++  A+D  P     +  + Y  RA  +L + K +AA+ D 
Sbjct: 29  HLELGKKLLAAGQLADALSQFHAAVDGDP-----DNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           T+ + L       + +  +R       G   E+  D
Sbjct: 84  TKVIQLK---MDFTAARLQRGHLLLKQGKLDEAEDD 116

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP 469
               +  L +   +    G   +A  KY   +   P  + +  +        C+   +KP
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKDEKP 311

Query: 470 EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             AI   +  L +      +  +L  R++AY +  +  E++ D
Sbjct: 312 VEAIRVCSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQD 351

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
            Q    F +G    A+    K L++C          L   RA+C++   +P  AISD   
Sbjct: 148 SQALNAFGSGDYTAAIAFLDKILEVCV-----WDAELRELRAECFIKEGEPRKAISDLKA 202

Query: 479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           A  L    + ++++ ++ S  Y  +G  + SL +
Sbjct: 203 ASKLK---NDNTEAFYKISTLYYQLGDHELSLSE 233

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 428 GYIEEAVKKYSKALDLCP----------LKMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477
           G ++EA   + K L   P            ++ + +    ++A          AAI+   
Sbjct: 108 GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167

Query: 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDA 513
           + L +       ++    R++ +   G  ++++ D 
Sbjct: 168 KILEVC---VWDAELRELRAECFIKEGEPRKAISDL 200

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
               EA++  S+ L + P     + +    +RA+ YL+ +  + AI D   A   +    
Sbjct: 309 EKPVEAIRVCSEVLQMEP-----DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN---E 360

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMD 512
           +  +      +A  ++  +++    
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYY 385

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP 469
               +  L +   +    G   +A  KY   +   P  + +  +        C+   +KP
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKP 288

Query: 470 EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             AI   +  L +      +  +L  R++AY +  +  E++ D
Sbjct: 289 VEAIRICSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQD 328

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
             + G +   AG + +A+ ++  A+D  P     +  + Y  RA  +L + K +AA+ D 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDP-----DNYIAYYRRATVFLAMGKSKAALPDL 60

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           T+ ++L       + +  +R       G   E+  D
Sbjct: 61  TKVIALK---MDFTAARLQRGHLLLKQGKLDEAEDD 93

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
            Q    F       A+    K L++C          L   RA+C++   +P  AISD   
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCV-----WDAELRELRAECFIKEGEPRKAISDLKA 179

Query: 479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           A  L    S ++++ ++ S  Y  +G  + SL +
Sbjct: 180 ASKLK---SDNTEAFYKISTLYYQLGDHELSLSE 210

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK 467
            + +     LK +GN  F A    EA+K Y  A++L P        V YSN + CY+   
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTG 73

Query: 468 KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             E  I  TT+AL +      HSK+L RR+ A + +G   +++ D
Sbjct: 74  DLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNFTDAMFD 115

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 19/171 (11%)

Query: 344 ELKSLNGRERVGEAITQTL--LQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKL 401
           E+ S+N       A       LQ  +        + +    ++ D    L       + L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ 461
             +  +      +F   +          + +A     ++++L P          Y   A 
Sbjct: 239 RENAALALCYTGIFHFLK--------NNLLDAQVLLQESINLHP------TPNSYIFLAL 284

Query: 462 CYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
                +  +       +A+ L+     +  + + R Q Y ++   K +  D
Sbjct: 285 TLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKED 332

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475
            L  + N        +E  K + KA+DL P     E    Y +R Q Y +L+  + A  D
Sbjct: 285 TLADKEN-------SQEFFKFFQKAVDLNP-----EYPPTYYHRGQMYFILQDYKNAKED 332

Query: 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             +A SL+     +     + +      G   ES   
Sbjct: 333 FQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAF 366

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK 468
                +     Q   +        A+K  +KA +L P              AQ  L ++K
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----RSEQAKIGLAQLKLQMEK 477

Query: 469 PEAAISDTTRALSLSKTMS 487
            + AI     +  L++TM 
Sbjct: 478 IDEAIELFEDSAILARTMD 496

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477
           + +G + F       AVK Y++ +   P     E    YSNRA     L     AI+D  
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
           +A+       +  ++  R++ A   +     +L  
Sbjct: 198 KAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            K +GN+ + A   +EA++ Y+KA +L       + I   +NRA       + E AIS  
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWEL------HKDITYLNNRAAAEYEKGEYETAISTL 61

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
             A+                S+++  +G A   L D
Sbjct: 62  NDAVEQG---REMRADYKVISKSFARIGNAYHKLGD 94

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE-------RIVLYSNRAQCYLMLK 467
           ++      ++  AG  +EA     +A+++      +E           ++  A+    L+
Sbjct: 12  YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 71

Query: 468 KPEAAISDTTRALSLSKTM--------SSHSKSLWRRSQAYDMMGLAKESLMD 512
             + A+    +AL                   +++ R+ A D +G   E++ +
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 362 LLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQG 421
           L++  H +    L+   K        + DL        ++   +      L  +    +G
Sbjct: 57  LMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL------LEIDKKQARLTGLLEYYFNFFRG 110

Query: 422 NQEFWAGYIEEAVKKYSKALDLCP-LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480
             E        A+K + KA      +K R E+   +   ++ Y  +K+   ++    +A 
Sbjct: 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170

Query: 481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            + K   +++    R  Q + +       L  
Sbjct: 171 EIYKEHEAYNI---RLLQCHSLFATNFLDLKQ 199

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           L   G  ++ AG  ++A K +     L            +     C   L   E A+   
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSY 75

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMG---LAKESLMDAL 514
           +    +     +  +  +  ++ +  +G    A+     A 
Sbjct: 76  SYGALMDI---NEPRFPFHAAECHLQLGDLDGAESGFYSAR 113

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490
           E+A++ YS    +              + A+C+L L   + A S    A +L+    +H 
Sbjct: 69  EQALQSYSYGALMDI-----NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 491 KSLWRRSQAYDMMGLAKE 508
               R     + +   K+
Sbjct: 124 ALAARAGAMLEAVTARKD 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 8/94 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           L      ++ +G  E+A   +     L            +     C   + + + AI   
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
           +    +        +  +  ++     G   E+ 
Sbjct: 79  SYGAVMDI---XEPRFPFHAAECLLQXGELAEAE 109

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 8/85 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     E++V  ++       L+  +  +    +A  L+    
Sbjct: 358 ETVQRLLPVLCQAHGLTP-----EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---P 409

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMD 512
               ++         +   +  L  
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPV 434

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 8/85 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     +++V  ++       L+  +  +    +A  L+    
Sbjct: 324 ETVQRLLPVLCQAHGLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---P 375

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMD 512
               ++         +   +  L  
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPV 400

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 15/83 (18%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     +++V  ++       L+  +  +    +A  L+    
Sbjct: 290 ETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ-- 342

Query: 488 SHSKSLWRRSQAYDMMGLAKESL 510
                   +  A       K++L
Sbjct: 343 --------QVVAIASHDGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +      +     ++  +    +A  L P     E++V  ++       L+  +  +   
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTP-----EQVVAIASNGGGKQALETVQRLLPVL 197

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +A  L+        ++         +   +  L  
Sbjct: 198 CQAHGLT---PQQVVAIASNGGGKQALETVQRLLPV 230

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     +++V  ++       L+  +  +    +A  L+    
Sbjct: 222 ETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---P 273

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMD 512
               ++   S     +   +  L  
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPV 298

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 15/94 (15%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +      +     ++  +    +A  L P     E++V  ++       L+  +A +   
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQALLPVL 163

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
            +A  L+            +  A    G  K++L
Sbjct: 164 CQAHGLTP----------EQVVAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 8/85 (9%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     +++V  ++ +     L+  +  +    +A  L+    
Sbjct: 256 ETVQRLLPVLCQAHGLTP-----QQVVAIASNSGGKQALETVQRLLPVLCQAHGLT---P 307

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMD 512
               ++         +   +  L  
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 9/96 (9%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +   G  +     ++  +    +A  L P     +++V  ++       L+  +  +   
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGKQALETVQRLLPVL 231

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +A  L+        ++         +   +  L  
Sbjct: 232 CQAHGLT---PQQVVAIASNGGGKQALETVQRLLPV 264

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
             ++  +    +A  L P     E++V  ++       L+  +  +    +A  L+    
Sbjct: 392 ETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ- 445

Query: 488 SHSKSLWRRSQAYDMMGLAKESL 510
                      A    G  + +L
Sbjct: 446 ---------VVAIASNGGGRPAL 459

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 7/67 (10%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +      +     ++  +    +A  L P     +++V  ++       L+  +  +   
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASHDGGKQALETVQRLLPVL 129

Query: 477 TRALSLS 483
            +A  L+
Sbjct: 130 CQAHGLT 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +       +  G IEEA   +               +      A  Y + ++ + A    
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAADLY 93

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMG---LAKESLMDAL 514
             A +L K   +    ++   Q    +     AKE     +
Sbjct: 94  AVAFALGK---NDYTPVFHTGQCQLRLKAPLKAKECFELVI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480
                     ++A   Y+ A  L              +  QC L LK P  A       +
Sbjct: 77  AAIYQIKEQFQQAADLYAVAFALGK-----NDYTPVFHTGQCQLRLKAPLKAKECFELVI 131

Query: 481 SLSKTMSSHSKSLWRRSQAY 500
             S       + L  ++Q+Y
Sbjct: 132 QHSN-----DEKLKIKAQSY 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 70/509 (13%), Positives = 125/509 (24%), Gaps = 187/509 (36%)

Query: 103 WLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRA 162
           W L  +                       E+ V+  V     E+LR    ++   +    
Sbjct: 69  WTLLSKQ----------------------EEMVQKFVE----EVLRINYKFLMSPIKTEQ 102

Query: 163 LG-------HLASHDKTFEAVAL---YEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVK 212
                    ++   D+ +    +   Y V  ++    +     + + E    L+  K V 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----QALLE----LRPAKNVL 154

Query: 213 YHCDLLTRGLGGFELENRKAEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCG 272
                   G+ G      K            + L     C    S+ + C  DF KI   
Sbjct: 155 ID------GVLGSG----K----------TWVALD---VCL---SYKVQCKMDF-KI--- 184

Query: 273 MWGGLANHTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEV- 331
            W  L N  SP          + V+E +  +           ID       D  +  ++ 
Sbjct: 185 FWLNLKNCNSP----------ETVLEMLQKL--------LYQIDPNWTSRSDHSSNIKLR 226

Query: 332 IDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDL 391
           I      L  L++ K               LL     V               L  + + 
Sbjct: 227 IHSIQAELRRLLKSKPYE----------NCLL-----V---------------LLNVQNA 256

Query: 392 KVQK------------RKK---EKLMSDEEMK---ENELSVFMLKQQGNQEFWAGYIEEA 433
           K               R K   + L +        ++        +   +     Y++  
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCR 314

Query: 434 VKKYSK-ALDLCPL--KMRKERIVLYSNRAQCYLML--KKPEAAISDTTRAL-------- 480
            +   +  L   P    +  E I         +  +   K    I  +   L        
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 481 --SLS----------KTMSSHSKSLWRRSQAYDMM----GLAKESLMDALTFIGSRMKCK 524
              LS            +S     +W      D+M     L K SL++           K
Sbjct: 375 FDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVE-----------K 419

Query: 525 HTNRVKIPYYAAVMINKQMNATWPFIHAK 553
                 I   +  +  K        +H  
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRS 448

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 84/261 (32%)

Query: 30  SMNEQPPSLRRAKVAQCFKEL---------P---LSRL-----RDDQEHVLVLSGLFNIA 72
           S+N   P+  R    + F  L         P   LS +     + D   V+     +++ 
Sbjct: 362 SLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 73  IKQPDDPEF--PSLGIFECMTKL-----IHKGITDKEWLLR--DQNIYIP-----YYAAH 118
            KQP +     PS+   E   KL     +H+ I D   + +  D +  IP     Y+ +H
Sbjct: 418 EKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 119 IIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVAL 178
           I   + +      E+       + L  ++     ++E+++  R      +   +      
Sbjct: 477 I--GHHLKNIEHPER-------MTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNT-- 523

Query: 179 YEVEIIELAKNIACNCFEVVYEKFVGLKEKKRVKY-------------------HCDLLT 219
               + +L            Y+ ++   + K  +                    + DLL 
Sbjct: 524 ----LQQLKF----------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 220 RGLGGFELENRKAEEWASQLQ 240
             L     +    EE   Q+Q
Sbjct: 570 IAL--MAEDEAIFEEAHKQVQ 588

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
               EA+  + +AL L P     +    YS     + ++   E A+     AL L     
Sbjct: 250 KKYAEALDYHRQALVLIP-----QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---R 301

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMDA 513
             + S+       +M     E+ + A
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
              + A + +S+AL + P     E   +            + + A      AL   K + 
Sbjct: 173 NNSKLAERFFSQALSIAP-----EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

Query: 488 SHSKSLWRRSQAYDMMGLAKESL 510
           +   ++ +     + +G     L
Sbjct: 228 NEV-TVDKWEPLLNNLGHVCRKL 249

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 428 GYIEEAVKKYSKALDLCP----LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483
           G  + A K +  AL+            +   L +N       LKK   A+    +AL L 
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 428 GYIEEAVKKYSKALDLCP--LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485
             ++ A+  +  AL L        K     ++N    Y  LK  +AAI    + L LS  
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-- 546

Query: 486 MSSHSKSLWRRSQAYDMMG---LAKESLMDAL 514
            ++ +      +  Y       LA   L ++L
Sbjct: 547 -TNDANVHTAIALVYLHKKIPGLAITHLHESL 577

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 15/94 (15%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
             Q GN       I  A +    +  L          +L +            + AI+  
Sbjct: 451 HMQLGN-------ILLANEYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHF 498

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
             AL L K   S+ K     +  +  +G A   L
Sbjct: 499 QNALLLVKKTQSNEK---PWAATWANLGHAYRKL 529

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482
           + A+   ++ L L           +++  A  YL  K P  AI+    +L++
Sbjct: 533 DAAIDALNQGLLLST-----NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
           +   +    G IE A++   + L   P      +   Y      Y  L   + A+++   
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 479 ALSL 482
           A+ L
Sbjct: 61  AIEL 64

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           L    +      Y  EA    SKA+ L P     E +  ++   + Y       +A +  
Sbjct: 112 LNVTPD------YSPEAEVLLSKAVKLEP-----ELVEAWNQLGEVYWKKGDVTSAHTCF 160

Query: 477 TRALSLSKTMSSHS-KSLWRRSQAYDMMGLAKESLMDAL 514
           + AL+  K   S    S+  R    D        +MD++
Sbjct: 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           LK++G+       + EA   Y+ AL LCP           +N A         E A+   
Sbjct: 281 LKEKGS-------VAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLY 328

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD 512
            +AL +       + +    +      G  +E+LM 
Sbjct: 329 RKALEVF---PEFAAAHSNLASVLQQQGKLQEALMH 361

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
           +  ++E+ AG  E A +   +     P     +   +    +  +   ++ + +   +T 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEP-----DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 479 ALSL 482
           A+  
Sbjct: 59  AIKQ 62

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
             +QG        I+ A+  Y +A++L P          Y N A           A    
Sbjct: 247 YYEQGL-------IDLAIDTYRRAIELQP-----HFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
             AL L     +H+ SL   +      G  +E++
Sbjct: 295 NTALRL---CPTHADSLNNLANIKREQGNIEEAV 325

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
            ++QGN       IEEAV+ Y KAL++ P     E    +SN A       K + A+   
Sbjct: 315 KREQGN-------IEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMG 504
             A+ +S    + + +          M 
Sbjct: 363 KEAIRIS---PTFADAYSNMGNTLKEMQ 387

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 10/166 (6%)

Query: 10  TSCSRMPQKVTCTKPYCFFCSMNEQPPSLRRAKVAQCFKELP--LSRLRDDQEHVL--VL 65
               +      C        +      S     +    K LP     L+     V+    
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 66  SGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTM 125
           S L N++      P    +   +   ++     +        ++I     A + + +   
Sbjct: 353 SLLSNMSR----HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS--SACYTVRNLMA 406

Query: 126 NKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171
           ++   A++   S ++  ++ L R   S      A   L  + S  +
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
           QQ  +    G  E+A + ++KA++        E  + Y N A     + + E A++   +
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEENK-----EDAIPYINFANLLSSVNELERALAFYDK 82

Query: 479 ALSL 482
           AL L
Sbjct: 83  ALEL 86

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 8/94 (8%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           +      +     ++  +    +A  L P     +++V  ++       L+  +  +   
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTP-----DQVVAIASNGGGKQALETVQRLLPVL 690

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
            +A  L+        ++   +     +   +  L
Sbjct: 691 CQAHGLT---QEQVVAIASNNGGKQALETVQRLL 721

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 15/83 (18%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
           G    A+++Y  A+D         R+ +Y      +        AI    + +  + T  
Sbjct: 88  GQDSLAIQQYQAAVDRDT-----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD- 141

Query: 488 SHSKSLWRRSQAYDMMGLAKESL 510
                     + +  +G A    
Sbjct: 142 ---------PKVFYELGQAYYYN 155

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 12/122 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
           G   +AV  Y KA+        K+    Y      +  L +   A +     +       
Sbjct: 4   GLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FP 58

Query: 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYA-AVMINKQ-MNA 545
           +H       +     +G  ++ +   L  I      + ++   I  Y  A++     ++ 
Sbjct: 59  NHQALRVFYAMVLYNLGRYEQGVELLLKIIA-----ETSDDETIQSYKQAILFYADKLDE 113

Query: 546 TW 547
           TW
Sbjct: 114 TW 115

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482
             + EA K ++++++           V Y  R   Y   +K + AI D   AL  
Sbjct: 51  KNMTEAEKAFTRSINRDK-----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 13/83 (15%)

Query: 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487
           G   E++  + KA+ L P     E    +  + +    L++ E A+      +++     
Sbjct: 20  GNYTESIDLFEKAIQLDP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69

Query: 488 SHSKSLWRRSQAYDMMGLAKESL 510
                       +     A   +
Sbjct: 70  ---IEDEYNKDVWAAKADALRYI 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489
           ++   ++    L         + ++L     + Y   ++ +AA+     AL    T    
Sbjct: 1   MQAITERLEAMLAQGT-----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--- 52

Query: 490 SKSLWRRSQAYDMMGLAKESL 510
                  S A+  +G   +  
Sbjct: 53  -------SVAWKWLGKTLQGQ 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	604
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.41
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.36
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.36
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.35
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.31
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.29
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.26
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.25
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.22
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.15
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.1
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.1
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.09
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.04
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.03
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.03
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.03
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.99
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.98
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.97
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.95
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.94
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.93
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.92
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.88
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.87
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.86
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.83
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.82
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.82
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.79
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.78
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.77
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.76
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.75
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.73
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.68
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.67
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.65
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.63
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.62
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.6
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.58
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.5
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.45
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.45
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.41
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.4
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.4
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.26
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.21
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.19
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.13
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.99
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.93
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.83
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.62
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.52
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.31
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.31
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.1
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.22
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	95.69
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.64
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.35
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.17
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.81
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.81
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.75
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.75
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	94.61
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	94.52
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.38
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	94.26
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.22
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.98
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.93
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.57
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	93.41
3nmz_A	458	APC variant protein; protein-protein complex, arma	93.4
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.03
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.61
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	92.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.8
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	91.64
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.62
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	91.34
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	90.82
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	90.46
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	88.54
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.51
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	88.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	87.65
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	87.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	86.48
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	86.24
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	85.05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	84.47
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	84.45
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	84.03
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	83.4
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.49
3nmz_A	458	APC variant protein; protein-protein complex, arma	82.34
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	81.7
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.79
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.56

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=1.6e-18  Score=154.39  Aligned_cols=115  Identities=21%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      +|+.++.++++|+.+|++|+|++|++.|++||+++|.     ++.+|.++|.||.++|++++|+.++++|++++|+   +
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~   80 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---F   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---h
Confidence            3457899999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV  537 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r  537 (604)
                      .++|+++|.++..+|++++|+.+|++++++.|     .+..+...+.+
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-----~~~~a~~~l~~  123 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDP-----SNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-----CCHHHHHHHHH
Confidence            99999999999999999999999999999944     44444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.77  E-value=2.2e-18  Score=156.61  Aligned_cols=141  Identities=24%  Similarity=0.271  Sum_probs=112.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCc-----ccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKM-----RKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~-----~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      +....+..+++.|+.+|+.|+|++|+..|++||++        .|...     .+..+.+|.|+|.||+++|+|++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            45567999999999999999999999999999999        22211     222889999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCC-CHHHHHHHHHHHHHhcCccchHHhh
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRV-KIPYYAAVMINKQMNATWPFIHAKS  554 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~-~i~~~l~rlikKqk~~~~l~~ea~r  554 (604)
                      |++||+++|+   ++++|+++|.+|..+|++++|+.+|++++++.|     .+. .+...+..+..+..+.....+...+
T Consensus        86 ~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~~l~~~~~~~~~~~~~~k~~~~  157 (162)
T 3rkv_A           86 SSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-----AAASVVAREMKIVTERRAEKKADSRVTYS  157 (162)
T ss_dssp             HHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHHHHTTSSCC---
T ss_pred             HHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999999944     343 4666676666666555544445555


Q ss_pred             hhc
Q 046116          555 KMC  557 (604)
Q Consensus       555 Km~  557 (604)
                      +|+
T Consensus       158 ~~f  160 (162)
T 3rkv_A          158 KMF  160 (162)
T ss_dssp             ---
T ss_pred             Hhc
Confidence            554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.72  E-value=1.9e-17  Score=157.19  Aligned_cols=111  Identities=15%  Similarity=0.208  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-  482 (604)
                      ...+..+++.|+.+|+.|+|++|+..|++||+++|+       ...+.++.+|+|+|.|+.++|+|++|+.++++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            346899999999999999999999999999999998       333335669999999999999999999999999999 


Q ss_pred             ------CCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          483 ------SKTMSSHSKSL----WRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       483 ------dPd~~~n~KA~----~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                            +|+   +.++|    |++|.++..+|++++|+.+|++++++.|++.
T Consensus        88 n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           88 NRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence                  999   99999    9999999999999999999999999977644

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=3.1e-16  Score=139.24  Aligned_cols=105  Identities=20%  Similarity=0.236  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--  488 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--  488 (604)
                      .+.+..+++.|+.+|++|+|++|++.|++||+++|+     ++.+|.|+|.+|+.+|+|++|+.++++||+++|+...  
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            457889999999999999999999999999999999     8999999999999999999999999999999987211  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                        ..++|+++|.++..+|++++|+..|+++++..
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence              15799999999999999999999999999983

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=9.5e-16  Score=132.93  Aligned_cols=117  Identities=18%  Similarity=0.136  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|+.+++.|+|++|+..|+++|+++|.     ++.+|.++|.+|.++|+|++|+.+++++++++|+   +..+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   74 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRA   74 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHH
Confidence            5789999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC-CCCCCHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKH-TNRVKIPYYAAV  537 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d-~~~~~i~~~l~r  537 (604)
                      ++.+|.++..+|++++|+..|++++++.|+..+ |.+..+...+.+
T Consensus        75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            999999999999999999999999999744322 233334444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=7.1e-15  Score=136.36  Aligned_cols=108  Identities=12%  Similarity=-0.058  Sum_probs=102.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+...++.+..+...|..+++.|+|++|+..|+++++++|.     ++.+|.++|.+|..+|+|++|+..+++|++++|+
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            34445668889999999999999999999999999999999     9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                         ++.+|+++|.+|..+|++++|+..|++++++.+
T Consensus       103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence               999999999999999999999999999999944

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=1.9e-14  Score=130.86  Aligned_cols=105  Identities=24%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      ....+..+...|+.++..|+|++|+..|+++|+++|.     ++.+|.++|.+|+.+|+|++|+.+++++++++|+   +
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---Y   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence            3457889999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+|+++|.+|..+|++++|+..|++++++.|+
T Consensus        79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.57  E-value=2.6e-14  Score=153.69  Aligned_cols=143  Identities=21%  Similarity=0.232  Sum_probs=116.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ccchHHHHHHHHHHHHHcCCcHHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM----------RKERIVLYSNRAQCYLMLKKPEAAISDTT  477 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~  477 (604)
                      ...+..+..++++|+.+++.|+|++|+..|++||+++|...          ......+|.|+|.||+++|+|++|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34566789999999999999999999999999999999820          11227999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhc
Q 046116          478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMC  557 (604)
Q Consensus       478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~  557 (604)
                      +||+++|+   +.++|+++|.+|..+|++++|+.+|++++++.     |.+..+...+..+..+..+.....+...++|+
T Consensus       342 ~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          342 KALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999999999999999999999999994     45556777777776666554434444455554


Q ss_pred             C
Q 046116          558 K  558 (604)
Q Consensus       558 k  558 (604)
                      .
T Consensus       414 ~  414 (457)
T 1kt0_A          414 K  414 (457)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.57  E-value=9.7e-14  Score=120.46  Aligned_cols=117  Identities=30%  Similarity=0.358  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|+++++++|.     ++.++.++|.+|..+|+|++|+.+++++++++|+   +..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   79 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA   79 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHH
Confidence            4788999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV  537 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r  537 (604)
                      ++.+|.++..+|++++|+..|+++++..|+.....+..+...+.+
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~  124 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI  124 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876432223334444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.56  E-value=3.9e-14  Score=129.10  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..++..|+|++|+..|++++.++|.     ++.+|.++|.+|..+|+|++|+..++++++++|+   +
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~   88 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-----DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---E   88 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---C
Confidence            3456788999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.56  E-value=3.3e-14  Score=129.39  Aligned_cols=103  Identities=8%  Similarity=-0.113  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ++.+..+...|+.+++.|+|++|++.|+++|+++|+     ++.+|.++|.+|..+|++++|+..++++++++|+   ++
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~   99 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---QK   99 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---CH
Confidence            345677889999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH-HHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDA-LTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~-~kALkl~~  521 (604)
                      .+++.+|.++..+|++++|...| ++++++.|
T Consensus       100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A          100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            99999999999999999988875 89999944

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=8.2e-14  Score=130.46  Aligned_cols=131  Identities=27%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc-----------hHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE-----------RIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~-----------~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      ..+....+..+...|+.++..|+|++|+..|.+++++.|......           ...++.++|.+|..+|+|++|+.+
T Consensus        31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  110 (198)
T 2fbn_A           31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH  110 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            356677889999999999999999999999999999998821100           138999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      ++++++++|+   +.++++++|.++..+|++++|+..|++++++.     |.+..+...+..+.....+.
T Consensus       111 ~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          111 ASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999999999999999999999999993     44555666666655554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.55  E-value=6.6e-14  Score=125.03  Aligned_cols=105  Identities=12%  Similarity=0.058  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..++..|+|++|+..|++++..+|+     ++.+|.++|.+|..+|+|++|+..++++++++|+   +
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~   85 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---E   85 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---C
Confidence            3456788999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+++.+|.++..+|++++|+..|+++++..|+
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999664

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.55  E-value=3.6e-14  Score=146.26  Aligned_cols=129  Identities=22%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM----------RKERIVLYSNRAQCYLMLKKPEAAISDTTR  478 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r  478 (604)
                      ..+..+..+...|+.+++.|+|++|+..|++||+++|...          ....+.+|.|+|.||+++|+|++|+.++++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556788999999999999999999999999999999820          111279999999999999999999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       479 ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      |++++|+   +.++++++|.+|..+|++++|+.+|++++++.     |.+......+..+..+..+.
T Consensus       222 al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          222 ALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
Confidence            9999999   99999999999999999999999999999994     44545666666655554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.52  E-value=5.5e-14  Score=147.86  Aligned_cols=130  Identities=22%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------cccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-----------MRKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-----------~~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      .++....+..++..|+.+++.|+|++|+..|++||++.|..           ..+..+.+|.|+|.||+++|+|++|+.+
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            44556678899999999999999999999999999932220           1222899999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      +++|++++|+   +.++++++|.+|..+|++++|+.+|++++++.     |.+..+...+..+..+..+
T Consensus       296 ~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          296 CLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999999999999999999999999994     3444555555555544433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=4.9e-13  Score=122.36  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+...++++.|+..+.+++.++|.     +..++.++|.+|.++|++++|+..++++++++|+   ++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~  143 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRA  143 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhH
Confidence            4677889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.+|..+|++++|+..|+++++..|+
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.50  E-value=5.1e-14  Score=145.43  Aligned_cols=124  Identities=21%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-----------------HHHHHHHHHHHHcCCcH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-----------------VLYSNRAQCYLMLKKPE  470 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-----------------~l~~NRA~~ylkLgdy~  470 (604)
                      ++.+..+..++..|+.+++.|+|++|+..|.+|+.+.|.     +.                 .+|.|+|.||+++|+|+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~  247 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD  247 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            456667899999999999999999999999999999998     44                 49999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          471 AAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       471 eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      +|+.+|++||+++|+   +.++|+++|.+|..+|++++|+.+|++++++.|     .+..+...+..+..+.+.
T Consensus       248 ~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-----~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          248 EAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-----DDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHH
Confidence            999999999999999   999999999999999999999999999999954     344455555555443333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=1e-12  Score=109.03  Aligned_cols=101  Identities=27%  Similarity=0.355  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.+++...|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~   74 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKG   74 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHH
Confidence            4678999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++..+|++++|+..|+++++..|
T Consensus        75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           75 YSRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999943

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=3.1e-12  Score=107.67  Aligned_cols=105  Identities=27%  Similarity=0.311  Sum_probs=100.1

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+...|..++..|+|++|+..|.+++...|.     .+.++.++|.++..+|++++|+..+.++++++|+   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---   78 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---   78 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---
Confidence            45567889999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..+++.+|.++..+|++++|+..|+++++..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999943

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=1.8e-12  Score=110.40  Aligned_cols=102  Identities=27%  Similarity=0.355  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|..++..|+|++|+..|.++++.+|.     +..++.++|.+|..+|++++|+..++++++++|+   +..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~   85 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIK   85 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chH
Confidence            46789999999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +++.+|.++..+|++++|+..|+++++..+
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999954

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.44  E-value=1.8e-12  Score=129.90  Aligned_cols=103  Identities=31%  Similarity=0.396  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|+.++..|+|++|+..|++||+++|.     ++.++.|+|.+|.++|+|++|+.++++|++++|+   +.+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~   75 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH   75 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            678999999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      +++|.+|..+|++++|+..|++++++.|++.
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            9999999999999999999999999987653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=8.6e-13  Score=116.16  Aligned_cols=100  Identities=13%  Similarity=-0.025  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+...|..+++.|++++|+..|.++++.+|+     ++.+|.++|.++..+|++++|+..+++|++++|+   +..+++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~   89 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHA   89 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Confidence            34678999999999999999999999999999     8999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+|.++..+|++++|+..|+++++..|+
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           90 ALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.6e-12  Score=111.70  Aligned_cols=104  Identities=30%  Similarity=0.439  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|+++++++|+  ......++.++|.+|..+|+|++|+..++++++++|+   +..+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHHH
Confidence            5788999999999999999999999999999998  1112899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++..+|++++|+..|+++++..|
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999943

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.41  E-value=3.8e-12  Score=107.47  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH---  489 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n---  489 (604)
                      .+..+...|..++..|+|++|+..|.++++.+|.     .+.++.++|.+|..+|++++|+..++++++++|+   +   
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~   74 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE---NRED   74 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---STTC
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc---cchh
Confidence            5778999999999999999999999999999999     8999999999999999999999999999999988   6   


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          490 ----SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       490 ----~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                          ..+++.+|.++..+|++++|+..|+++++..+      +......+..+...
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~l~~~~~~  124 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR------TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHH
Confidence                89999999999999999999999999999832      33344555544443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.41  E-value=8.2e-12  Score=110.58  Aligned_cols=105  Identities=31%  Similarity=0.367  Sum_probs=100.1

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      .....+..+...|..++..|+|++|+..|.++++.+|.     ++.++.++|.++..+|+|++|+..++++++++|+   
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---   79 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence            34557889999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..+++.+|.++..+|++++|+..|+++++..+
T Consensus        80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999944

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.39  E-value=3.5e-12  Score=121.38  Aligned_cols=101  Identities=18%  Similarity=0.061  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHH----------------HHHHHHHcCCcHHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN----------------RAQCYLMLKKPEAAISDT  476 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~N----------------RA~~ylkLgdy~eAI~D~  476 (604)
                      .++.+..+|..++..|+|++|+..|+++++++|+     ++.++.+                +|.+|..+|++++|+..+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3567889999999999999999999999999998     8888888                999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +++++++|+   +..+++.+|.++..+|++++|+..|++++++.|
T Consensus        78 ~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           78 KELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             HHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            999999999   999999999999999999999999999999944

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.38  E-value=3.1e-12  Score=146.46  Aligned_cols=106  Identities=15%  Similarity=0.105  Sum_probs=100.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      +..++.+..+.+.|+.+.+.|+|++|+..|++||+++|+     ++.+|.|+|.+|..+|++++|+..+++|++++|+  
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--  109 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--  109 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence            334456789999999999999999999999999999999     8999999999999999999999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                       +..+|+++|.+|..+|++++|+..|++++++.|
T Consensus       110 -~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  142 (723)
T 4gyw_A          110 -FADAHSNLASIHKDSGNIPEAIASYRTALKLKP  142 (723)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence             999999999999999999999999999999944

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=6.2e-12  Score=120.49  Aligned_cols=102  Identities=19%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          411 ELSVFMLKQQGNQEFWA-----------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~-----------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      +..+..+...|..+...           |++++|+..|+++++++|+     ++.++.++|.+|..+|++++|+..+++|
T Consensus        70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a  144 (217)
T 2pl2_A           70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-----YAPLHLQRGLVYALLGERDKAEASLKQA  144 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            34567888899999999           9999999999999999999     8999999999999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++++ +   ++.+++.+|.++..+|++++|+..|+++++..|
T Consensus       145 l~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P  182 (217)
T 2pl2_A          145 LALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALEQAP  182 (217)
T ss_dssp             HHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             Hhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999 8   899999999999999999999999999999843

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.1e-11  Score=114.86  Aligned_cols=106  Identities=20%  Similarity=0.150  Sum_probs=100.6

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+...|..++..|+|++|+..|+++++.+|.     ++.++.++|.+|..+|++++|+..++++++++|+   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---  205 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---  205 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---
Confidence            34557888999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +..+++.+|.++..+|++++|+..|+++++..+.
T Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  239 (258)
T 3uq3_A          206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAE  239 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence            9999999999999999999999999999999643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=6.6e-12  Score=107.69  Aligned_cols=102  Identities=13%  Similarity=0.005  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---HH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH---SK  491 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n---~K  491 (604)
                      ..+...|..++..|+|++|+..|.++++..|+  ....+.++.++|.+|..+|+|++|+..++++++++|+   +   ..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~   77 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAG   77 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHH
Confidence            34678899999999999999999999999998  1222379999999999999999999999999999999   8   89


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +++.+|.++..+|++++|+..|+++++..|
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999954

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.36  E-value=1.6e-11  Score=116.82  Aligned_cols=80  Identities=11%  Similarity=0.014  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      ..+.|..+++.|+|++|+..|+++|+++|+     ++.++.++|.+|..+|++++|+..++++++++|+   +..+++.+
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~l  128 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFL  128 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Confidence            344999999999999999999999999999     8999999999999999999999999999999999   99999888


Q ss_pred             HHHHHHcC
Q 046116          497 SQAYDMMG  504 (604)
Q Consensus       497 G~a~~~LG  504 (604)
                      |.+|+..|
T Consensus       129 g~~~~~~~  136 (208)
T 3urz_A          129 GNYYYLTA  136 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88876554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.36  E-value=4.8e-12  Score=144.93  Aligned_cols=105  Identities=23%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..++.+.+.|+.+.++|+|++|+..|++||+++|+     ++.+|.|+|.+|.++|++++|+..+++|++++|+   +
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~   76 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---F   76 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Confidence            4567899999999999999999999999999999999     9999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+|+++|.+|..+|++++|+..|++++++.|+
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.36  E-value=5.7e-12  Score=120.75  Aligned_cols=102  Identities=14%  Similarity=0.098  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-----------CCcHHHHHHHHHH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-----------KKPEAAISDTTRA  479 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-----------gdy~eAI~D~~rA  479 (604)
                      +..+..+...|..+++.|++++|+..|+++++++|+     ++.++.++|.++..+           |++++|+..++++
T Consensus        36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  110 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-----YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA  110 (217)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence            346788999999999999999999999999999999     899999999999999           9999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ++++|+   +..+++.+|.++..+|++++|+..|++++++.
T Consensus       111 l~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          111 ERVNPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            999999   99999999999999999999999999999993

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=6.9e-13  Score=110.62  Aligned_cols=95  Identities=27%  Similarity=0.294  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH---  489 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n---  489 (604)
                      .+..+...|+.++..|+|++|+..|+++++++|.     ++.++.++|.+|..+|+|++|+.+++++++++|+   +   
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST---AEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS---TTSH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ccHH
Confidence            4678999999999999999999999999999999     8999999999999999999999999999999999   8   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046116          490 ---SKSLWRRSQAYDMMGLAKESLMDALT  515 (604)
Q Consensus       490 ---~KA~~rrG~a~~~LGd~dEAL~d~~k  515 (604)
                         .++++++|.++..+|++++|+..+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence               99999999999999988887766543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.35  E-value=3.1e-12  Score=135.60  Aligned_cols=109  Identities=9%  Similarity=0.057  Sum_probs=98.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGY-IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~Gd-yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP  484 (604)
                      .+...+..+..+..+|..+...|+ |++|+..|++||+++|+     ++.+|++||.++..+|++++|+.++++||+++|
T Consensus       123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            344455678889999999999996 99999999999999999     899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +   +..+|+.+|.++..+|++++|+..|+++|++.|+
T Consensus       198 ~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          198 K---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             T---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             c---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9   9999999999999999999999999999999543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.34  E-value=1e-11  Score=117.73  Aligned_cols=100  Identities=24%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP-LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P-~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      +..+...|..++..|+|++|+..|+++++++| .     +..++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   78 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA   78 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence            47899999999999999999999999999998 6     7889999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++..+|++++|+..|+++++..|
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999944

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.31  E-value=8.2e-11  Score=98.06  Aligned_cols=100  Identities=22%  Similarity=0.231  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..++..|++++|+..|.+++...|.     ...++.++|.++...|++++|+..++++++++|+   +..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHH
Confidence            677889999999999999999999999999998     7899999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+|.++..+|++++|+..|+++++..|
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999843

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.31  E-value=1.6e-12  Score=118.27  Aligned_cols=112  Identities=9%  Similarity=-0.025  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQA  499 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a  499 (604)
                      .|..+..+|++++||+.|.+++...|+     ++..++++|.+|+++|+|++|+..++++++++|+   ++.+|+.+|.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~   74 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLL   74 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence            577788899999999999999999998     8999999999999999999999999999999999   99999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          500 YDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       500 ~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      |..+|++++|+..|++++++.     |.+......+..+..+..+
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           75 YELEENTDKAVECYRRSVELN-----PTQKDLVLKIAELLCKNDV  114 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCS
T ss_pred             HHHcCchHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999994     4454555555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.29  E-value=7.3e-11  Score=107.64  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHhcCCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-YLMLKKP--EAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-ylkLgdy--~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+ |...|++  ++|+..++++++++|+   +
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~  114 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---E  114 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---C
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---c
Confidence            4678899999999999999999999999999999     89999999999 8899999  9999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..+++.+|.++..+|++++|+..|+++++..|
T Consensus       115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A          115 ITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999944

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.27  E-value=2.4e-11  Score=128.80  Aligned_cols=106  Identities=11%  Similarity=-0.000  Sum_probs=101.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~rALeLdPd~~  487 (604)
                      ..+..+..+...|..+.+.|+|++|+..|+++|+++|.     +..+|.+||.++..+|+ +++|+.++++||+++|+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--  164 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--  164 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--
Confidence            34567889999999999999999999999999999999     99999999999999997 99999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                       +..+|+.+|.++..+|++++|+..|+++++++|+
T Consensus       165 -~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          165 -NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence             9999999999999999999999999999999553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=6.7e-11  Score=111.98  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH---
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS---  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~---  490 (604)
                      ...+...|..++..|+|++|+..|.++++++|.     .+.++.++|.+|..+|++++|+..++++++++|+   +.   
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  113 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIE  113 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHH
Confidence            356677999999999999999999999999999     9999999999999999999999999999999999   88   


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 ----KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 ----KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                          .+|+.+|.++..+|++++|+..|+++++..|
T Consensus       114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  148 (228)
T 4i17_A          114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS  148 (228)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence                7799999999999999999999999999944

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.26  E-value=1.5e-10  Score=105.62  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..+++.|++++|+..+.+++...|.     .+.++.++|.++...++++.|+..+.++++++|+   +.
T Consensus        36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~  107 (184)
T 3vtx_A           36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-----SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV---YA  107 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---ch
Confidence            345778899999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++.+|.++..+|++++|+..|+++++..|
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p  138 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP  138 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence            9999999999999999999999999999943

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.26  E-value=6e-11  Score=110.38  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH---
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS---  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~---  490 (604)
                      +..+...|..++..|+|++|+..|.++++++|.     .+.++.++|.+|..+|++++|+.++++++++.|+   +.   
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~  108 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG---NQLID  108 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT---CSEEE
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---ccHHH
Confidence            568999999999999999999999999999999     8999999999999999999999999999998887   55   


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          491 -------------KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       491 -------------KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                                   .+++.+|.++..+|++++|+..|+++++..++
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A          109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence                         99999999999999999999999999999554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.25  E-value=6.1e-12  Score=108.59  Aligned_cols=88  Identities=15%  Similarity=0.036  Sum_probs=80.2

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116          426 WAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM  502 (604)
Q Consensus       426 k~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~  502 (604)
                      ..|+|++|+..|.++|++   +|.     .+.++.++|.+|..+|+|++|+..++++++++|+   +..+++.+|.++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYN   73 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHH
Confidence            468999999999999999   577     8999999999999999999999999999999999   99999999999999


Q ss_pred             cCCHHHHHHHHHHHHhchh
Q 046116          503 MGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       503 LGd~dEAL~d~~kALkl~~  521 (604)
                      +|++++|+..|+++++..|
T Consensus        74 ~g~~~~A~~~~~~al~~~p   92 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETS   92 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999954

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.24  E-value=5.5e-11  Score=97.79  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..++..|+|++|+..|.++++++|.     ...++.++|.+|..+|++++|+..++++++++|+ ..+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~   79 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-----ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW   79 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH
Confidence            445678899999999999999999999999999     8999999999999999999999999999999987 3358899


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMM-GLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~L-Gd~dEAL~d~~kALkl~~  521 (604)
                      +.+|.++..+ |++++|+..++++++..|
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            9999999999 999999999999999954

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=1.4e-11  Score=133.49  Aligned_cols=114  Identities=29%  Similarity=0.322  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +.+..+...|+.+++.|+|++|++.|++|++++|+     .+.++.++|.+|.++|+|++|+.++++|++++|+   +..
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~   75 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIK   75 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHH
Confidence            45777888999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM  538 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl  538 (604)
                      +++++|.+|..+|++++|+..|+++++..|     .+......+...
T Consensus        76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~l~~~  117 (477)
T 1wao_1           76 GYYRRAASNMALGKFRAALRDYETVVKVKP-----HDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence            999999999999999999999999999944     444455555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.8e-10  Score=119.91  Aligned_cols=102  Identities=29%  Similarity=0.388  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+.+..+...|+.+++.|+|++|+..|++++..+|+      +.++.++|.+|.++|++++|+.+++++++++|+   +.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~   73 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YS   73 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HH
Confidence            457899999999999999999999999999999986      789999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++.+|.++..+|++++|+..|+++++..+
T Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           74 KVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999954

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.21  E-value=1.4e-10  Score=116.93  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~  283 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-----DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---FIRS  283 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHH
Confidence            3567889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ++.+|.++..+|++++|+..|++++++.|+..
T Consensus       284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          284 RYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence            99999999999999999999999999977654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.21  E-value=2.7e-10  Score=111.91  Aligned_cols=121  Identities=17%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ........|..++..|++++|+..|+++++..|. .......++.++|.+|.++|++++|+..++++++++|+   ++.+
T Consensus       233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  308 (359)
T 3ieg_A          233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNA  308 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHH
Confidence            3455667899999999999999999999999998 22223356888999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ  542 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq  542 (604)
                      ++.+|.++..+|++++|+..|+++++..     |.+..+...+.+.....
T Consensus       309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-----ENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999994     44444555555554433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=1.7e-10  Score=110.10  Aligned_cols=103  Identities=19%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+   +.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~  111 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YN  111 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CT
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---cc
Confidence            456889999999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++.+|.++..+|++++|+..|+++++..|
T Consensus       112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A          112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999844

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=1.5e-10  Score=112.40  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+++.|+|++|+..|.++++..|.  ....+.+++++|.+|+++|+|++|+..+++++++.|+......+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            5788999999999999999999999999999998  12238999999999999999999999999999999874446889


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDM--------MGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~--------LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.++..        +|++++|+..|+++++..|+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            9999999999        99999999999999999553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.19  E-value=1.1e-10  Score=103.57  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..+++.|+|++|+..|++||+++|+     ++.+|.++|.+|..+|++++|+.+++++++++|+   +
T Consensus        43 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---~  114 (126)
T 4gco_A           43 DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-----FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS---N  114 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC---C
Confidence            3446789999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHH
Q 046116          490 SKSLWRRSQAY  500 (604)
Q Consensus       490 ~KA~~rrG~a~  500 (604)
                      ..++..++.++
T Consensus       115 ~~a~~~l~~~l  125 (126)
T 4gco_A          115 EEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.18  E-value=4e-10  Score=112.53  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|++++|+..|.+++++.|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~  287 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRS  287 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Confidence            4678899999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ++.+|.++..+|++++|+..|+++++..|+.
T Consensus       288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          288 RYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999997765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=2.1e-10  Score=106.68  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|+.++..|+|++|+..|++++  .|      .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~   73 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVA   73 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHH
Confidence            46678899999999999999999999995  44      4789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++.+|.++..+|++++|+..|+++++..++
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999998553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.17  E-value=1.4e-09  Score=103.25  Aligned_cols=99  Identities=10%  Similarity=-0.053  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|++++|+..|.++++..|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~  211 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-----QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ---NARS  211 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHH
Confidence            3455556666666666666666666666666666     5666666666666666666666666666666666   6666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++.++.++..+|++++|+..++++++.
T Consensus       212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          212 LLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            666666666666666666666666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.17  E-value=5.8e-10  Score=99.03  Aligned_cols=103  Identities=17%  Similarity=0.061  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|++++|+..|.++++..|.     .+.++.++|.++..+|++++|+..++++++++|+   +..+
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  146 (186)
T 3as5_A           75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKV  146 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHH
Confidence            3567888999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ++.+|.++..+|++++|+..++++++..++.
T Consensus       147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          147 HRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999996643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=1.1e-09  Score=109.54  Aligned_cols=111  Identities=7%  Similarity=-0.159  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116          413 SVFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--  488 (604)
                      .+..+.+.|..+... |+|++|+..|++|+++.|... ....+.++.++|.+|..+|+|++|+..++++++++|+...  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            477889999999997 999999999999999988521 1123678999999999999999999999999999998321  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                        ...+++++|.++..+|++++|+..|++++++.|..
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence              12378999999999999999999999999996643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=7.8e-11  Score=132.91  Aligned_cols=107  Identities=10%  Similarity=0.008  Sum_probs=100.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      ++..+..+..+...|..++..|+|++|+..|++|++++|+     ++.++.|+|.+|.++|+|++ +.++++|++++|+ 
T Consensus       460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-  532 (681)
T 2pzi_A          460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-----ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-  532 (681)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-
T ss_pred             hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-
Confidence            3445556889999999999999999999999999999999     89999999999999999999 9999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        +..+++++|.++..+|++++|+..|++++++.|+
T Consensus       533 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          533 --VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence              9999999999999999999999999999999543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.15  E-value=3.9e-09  Score=107.39  Aligned_cols=97  Identities=24%  Similarity=0.146  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+...|..+...|+|++|+..|.+++.++|+     ++.++.++|.+|..+|++++|+..++++++++|+   ++.+++
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~  275 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYC  275 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHH
Confidence            33444444444444444444444444444444     4445555555555555555555555555555555   455555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .+|.++...|++++|+..|+++++.
T Consensus       276 ~l~~~~~~~g~~~~A~~~~~~al~~  300 (388)
T 1w3b_A          276 NLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5555555555555555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.15  E-value=5.5e-11  Score=112.65  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP----------EAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy----------~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      +.+.|++|+..|.++++++|+     ++..|.|+|.++..++++          ++||..+++||+++|+   +..+||+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~   85 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence            446799999999999999999     999999999999999886          5999999999999999   9999999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHhchh
Q 046116          496 RSQAYDMMG-----------LAKESLMDALTFIGSRM  521 (604)
Q Consensus       496 rG~a~~~LG-----------d~dEAL~d~~kALkl~~  521 (604)
                      +|.+|..+|           ++++|+..|++|+++.|
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            999999985           89999999999999954

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.14  E-value=4e-10  Score=110.73  Aligned_cols=101  Identities=23%  Similarity=0.281  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .++.+...|+.++..|+|++|+..|+++++.+|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~   73 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAA   73 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchH
Confidence            3678999999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++..+|++++|+..|+++++..|
T Consensus        74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999954

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=9.2e-10  Score=92.16  Aligned_cols=100  Identities=22%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+...|..++..|++++|+..|.+++...|.     ....+.++|.++...|++++|+..++++++.+|+   +..++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  106 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAW  106 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHH
Confidence            556778899999999999999999999999998     7899999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+|.++...|++++|+..|+++++..|
T Consensus       107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          107 YNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999998844

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.14  E-value=2.6e-10  Score=122.74  Aligned_cols=117  Identities=12%  Similarity=-0.003  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc--------CCcHHHHHHH
Q 046116          414 VFMLKQQGNQEFWA---------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--------KKPEAAISDT  476 (604)
Q Consensus       414 A~~lk~~GN~lfk~---------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--------gdy~eAI~D~  476 (604)
                      ...+...|..++..         |+|++|+..|.+|++++|+     ++.+|.++|.+|..+        |++++|+..+
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            47889999999999         9999999999999999999     899999999999999        9999999999


Q ss_pred             HHHHhcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          477 TRALSLSK---TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       477 ~rALeLdP---d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                      ++|++++|   +   ++.+++.+|.+|..+|++++|+..|++++++.|     .+......+..+.....
T Consensus       245 ~~al~~~p~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          245 AQAEKVDRKASS---NPDLHLNRATLHKYEESYGEALEGFSQAAALDP-----AWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             HHHHHHCGGGGG---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHH
Confidence            99999999   8   999999999999999999999999999999943     44444455555544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.14  E-value=2.6e-10  Score=119.86  Aligned_cols=106  Identities=32%  Similarity=0.455  Sum_probs=96.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      .+....+..+...|+.+++.|+|++|+..|+++++.+|+     ++.++.++|.+|..+|++++|+..++++++++|+  
T Consensus        19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--   91 (537)
T 3fp2_A           19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--
T ss_pred             chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--
Confidence            344567899999999999999999999999999999999     8999999999999999999999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                       +..+++.+|.++..+|++++|+..|+ ++...++
T Consensus        92 -~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~  124 (537)
T 3fp2_A           92 -HSKALLRRASANESLGNFTDAMFDLS-VLSLNGD  124 (537)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred             -hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence             99999999999999999999999996 8877553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.1e-09  Score=102.92  Aligned_cols=106  Identities=14%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------cccchHHHHHHHHHHHHHcCCcHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK---------------------MRKERIVLYSNRAQCYLMLKKPEA  471 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~---------------------~~~~~a~l~~NRA~~ylkLgdy~e  471 (604)
                      .+..+...|..++..|++++|+..|.+++++.|..                     ..+..+.++.++|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            36778888888888888888888888888854430                     122378899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          472 AISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |+..++++++++|+   +..+++.+|.++..+|++++|+..|+++++..|
T Consensus       158 A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          158 AVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            99999999999999   999999999999999999999999999999843

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.11  E-value=1.1e-09  Score=102.68  Aligned_cols=100  Identities=11%  Similarity=0.002  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+...|..++..|++++|+..|.++++..|.     ++.++.++|.++...|++++|+..++++++++|+   +..++
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~  196 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---HADAF  196 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHH
Confidence            456777888888888888888888888888888     7888888888888888888888888888888888   88888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+|.++..+|++++|+..|+++++..|
T Consensus       197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          197 YNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            8888888888888888888888888843

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.11  E-value=7.3e-10  Score=94.51  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046116          431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL  510 (604)
Q Consensus       431 eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL  510 (604)
                      ++|+..|.++++.+|+     ++.++.++|.+|..+|++++|+..++++++++|+   +..+++.+|.++..+|++++|+
T Consensus         2 ~~a~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            2 QAITERLEAMLAQGTD-----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CCHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHH
Confidence            3689999999999999     8999999999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHHHHhchhhc
Q 046116          511 MDALTFIGSRMKC  523 (604)
Q Consensus       511 ~d~~kALkl~~~~  523 (604)
                      ..|+++++..+..
T Consensus        74 ~~~~~al~~~~~~   86 (115)
T 2kat_A           74 QAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc
Confidence            9999999996653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.11  E-value=4.6e-10  Score=122.20  Aligned_cols=101  Identities=11%  Similarity=-0.022  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|++.|+++++++|+     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~   93 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGI   93 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence            4567777888888888888888888888888887     7778888888888888888888888888888888   7888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.+|..+|++++|+..|+++++..+
T Consensus        94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  122 (568)
T 2vsy_A           94 ALWLGHALEDAGQAEAAAAAYTRAHQLLP  122 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888888888888888888888887733

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=1.1e-09  Score=91.63  Aligned_cols=98  Identities=22%  Similarity=0.237  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+...|..++..|++++|+..|.++++..|.     ....+.++|.++...|++++|+..++++++++|+   +..+++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~   73 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWY   73 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHH
Confidence            35678899999999999999999999999998     7899999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      .+|.++...|++++|+..++++++..
T Consensus        74 ~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           74 NLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999983

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.10  E-value=2.3e-09  Score=104.59  Aligned_cols=119  Identities=19%  Similarity=0.125  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc----cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR----KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~----~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      .+..+...|..++..|++++|+..|.+++++.|....    +..+.++.++|.+|..+|++++|+..++++++++|+   
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---  268 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---  268 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---
Confidence            4667888999999999999999999999998632110    125788899999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      +..+++.+|.++..+|++++|+..|+++++..     |.+......+...+
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~  314 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-----RDDTFSVTMLGHCI  314 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-----SCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-----CCchHHHHHHHHHH
Confidence            88999999999999999999999999999883     34444444444433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.10  E-value=5.2e-09  Score=106.45  Aligned_cols=104  Identities=19%  Similarity=0.102  Sum_probs=92.5

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+...|..++..|++++|+..|.+++++.|+     .+.++.++|.+|.+.|++++|+..++++++++|+   
T Consensus       232 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---  303 (388)
T 1w3b_A          232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT---  303 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---
T ss_pred             hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---
Confidence            34445677888899999999999999999999999998     7889999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +..+++.+|.++...|++++|+..|+++++..
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999883

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.10  E-value=1.5e-09  Score=101.62  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|++++|+..|.++++..|.     ...++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  161 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEA  161 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHH
Confidence            4677889999999999999999999999999999     8899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+|.++...|++++|+..|+++++..+
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          162 RFQFGMCLANEGMLDEALSQFAAVTEQDP  190 (243)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999843

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=1.1e-09  Score=87.98  Aligned_cols=84  Identities=25%  Similarity=0.273  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~   79 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHH
Confidence            5678889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcC
Q 046116          493 LWRRSQAYDMMG  504 (604)
Q Consensus       493 ~~rrG~a~~~LG  504 (604)
                      ++.+|.++..+|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.10  E-value=2e-09  Score=95.59  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|++++|+..|.++++..|.     .+.++.++|.++...|++++|+..++++++++|+   +..+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  112 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNV  112 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHH
Confidence            3667889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ++.+|.++..+|++++|+..++++++..
T Consensus       113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A          113 RFRLGVALDNLGRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999984

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=3.3e-09  Score=106.94  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 046116          422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYD  501 (604)
Q Consensus       422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~  501 (604)
                      +.+...|++++|+..|+++++.+|+     ++.+++++|.++.++|++++|+..++++++++|+   ++.+++++|.++.
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~l~~l~~~~~  245 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSP-----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---HPETLINLVVLSQ  245 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence            3344568999999999999999999     8999999999999999999999999999999999   9999999999999


Q ss_pred             HcCCHHHH-HHHHHHHHhchh
Q 046116          502 MMGLAKES-LMDALTFIGSRM  521 (604)
Q Consensus       502 ~LGd~dEA-L~d~~kALkl~~  521 (604)
                      .+|+++++ ...+++++++.|
T Consensus       246 ~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          246 HLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCT
T ss_pred             HcCCCHHHHHHHHHHHHHhCC
Confidence            99999875 578899999944

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.10  E-value=8.7e-09  Score=105.98  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ......|..++..|++++|+..|++++++.|. .......++.++|.++.++|++++|+..++++++++|+   +..+++
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~  333 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHH
Confidence            34566799999999999999999999999998 12222568999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          495 RRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      .+|.++..+|++++|+..|++++++.     |.+......+....
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHN-----ENDQQIREGLEKAQ  373 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-----cchHHHHHHHHHHH
Confidence            99999999999999999999999994     44444555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.09  E-value=7.4e-10  Score=113.97  Aligned_cols=105  Identities=22%  Similarity=0.265  Sum_probs=99.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+...|..+++.|+|++|+..|+++++.+|.     ++.++.++|.+|..+|++++|+..++++++++|+   
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---   92 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---   92 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence            34457889999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..+++.+|.+|..+|++++|+..|+++++..|
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  125 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  125 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999844

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.09  E-value=1.5e-09  Score=105.82  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|++++|+..|.++++.+|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~  242 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-----DAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRV  242 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHH
Confidence            4678899999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ++.+|.++..+|++++|+..|+++++..+..
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999996653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.09  E-value=7.8e-10  Score=111.35  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..+++.|+|++|+..|+++++.+|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~  135 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-----DAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKA  135 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence            3556889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ++.+|.+|..+|++++|+..|+++++..|+..
T Consensus       136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999999976543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.08  E-value=1.6e-09  Score=103.78  Aligned_cols=107  Identities=11%  Similarity=0.055  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..+++.|+|++|+..|+++++..|.  ......++.++|.+|.++|+|++|+..++++++++|+......++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            567889999999999999999999999999987  223467999999999999999999999999999999922223489


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDM------------------MGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~------------------LGd~dEAL~d~~kALkl~~~  522 (604)
                      +.+|.++..                  +|++++|+..|+++++..|+
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            999999987                  57999999999999999654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.08  E-value=1.7e-09  Score=99.57  Aligned_cols=105  Identities=10%  Similarity=0.036  Sum_probs=85.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--cC
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-KKPEAAISDTTRALS--LS  483 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALe--Ld  483 (604)
                      ++..+.....+...|..++..|++++|+..|.++++..|.     ...++.++|.+|..+ |++++|+..++++++  .+
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  109 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-----SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY  109 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence            3344455677788888888888888888888888888888     788888888888888 888888888888888  45


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      |.   +..+++.+|.++..+|++++|+..|+++++.
T Consensus       110 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A          110 PT---PYIANLNKGICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             SC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55   6788888888888888888888888888887

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=5.5e-09  Score=101.27  Aligned_cols=107  Identities=9%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHhcCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM--------LKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk--------Lgdy~eAI~D~~rALeLdPd  485 (604)
                      ...+...|..+++.|+|++|+..|+++++..|+  ....+.+++++|.+|..        +|++++|+..++++++++|+
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            778999999999999999999999999999986  23367899999999999        99999999999999999999


Q ss_pred             CCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          486 MSSHSKSL--------------WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       486 ~~~n~KA~--------------~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ......++              +.+|.+|..+|++++|+..|+++++..|+
T Consensus       130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            22223333              99999999999999999999999999553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.06  E-value=3.4e-09  Score=97.48  Aligned_cols=107  Identities=12%  Similarity=0.021  Sum_probs=97.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          407 MKENELSVFMLKQQGNQEFWA-GYIEEAVKKYSKALD--LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~-GdyeeAIe~YtkALe--l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      +...+.....+...|..++.. |++++|+..|.++++  ..|.     ...++.++|.++..+|++++|+..++++++.+
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  143 (225)
T 2vq2_A           69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ  143 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            333445677888999999999 999999999999999  5565     78999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |+   +..+++.+|.++..+|++++|+..++++++..+
T Consensus       144 ~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          144 PQ---FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99   999999999999999999999999999999844

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.05  E-value=5.8e-09  Score=98.94  Aligned_cols=100  Identities=18%  Similarity=0.124  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALD--LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALe--l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ....+...|..++..|++++|+..|.++++  ..|.     .+.++.++|.+|..+|++++|+..++++++++|+   +.
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~  175 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE-----RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QP  175 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cH
Confidence            356788999999999999999999999999  7777     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      .+++.+|.++..+|++++|+..|+++++..
T Consensus       176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          176 SVALEMADLLYKEREYVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999983

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.05  E-value=2e-08  Score=97.82  Aligned_cols=115  Identities=10%  Similarity=-0.084  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---------C
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS---------K  484 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd---------P  484 (604)
                      ...+...|..++..|++++|+..|+++++..|.     ++.++.++|.+|..+|++++|+..+++++++.         |
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  233 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD  233 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence            455667888889999999999999999999888     78888899999999999999999999999886         4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                      .   +..+++.+|.++..+|++++|+..|+++++..     |.+......+.....+
T Consensus       234 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~  282 (330)
T 3hym_B          234 K---WEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQNASTYSAIGYIHSL  282 (330)
T ss_dssp             T---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHH
Confidence            4   67888899999999999999999999998883     3344444455444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.04  E-value=2e-09  Score=110.73  Aligned_cols=101  Identities=14%  Similarity=0.017  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+.+.|..+++.|+|++|+..|++||+++|.     ++.+|+++|.+|..+|+|++|+.++++|++++|+   +.
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~  264 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NK  264 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CH
Confidence            335788999999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKES-LMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEA-L~d~~kALkl  519 (604)
                      .+++.+|.++..+|++++| ...|++.+..
T Consensus       265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          265 AAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 4567777765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.04  E-value=1.9e-09  Score=103.16  Aligned_cols=109  Identities=9%  Similarity=-0.039  Sum_probs=91.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .++..+..+..+...|..++..|+|++|+..|.++++ .|. .....+.+|.++|.+|..+|++++|+..++++++++|+
T Consensus        29 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           29 LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN-ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             HHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC-chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            3444555666788899999999999999999999998 443 23335677899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                         +..+++.+|.++..+|++++|+..|+++++.
T Consensus       107 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          107 ---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             ---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             ---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence               8899999999999999999999999999988

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.03  E-value=2.1e-09  Score=107.34  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..++..|+|++|+..|+++++.+|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~  135 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-----HMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTAL  135 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHH
Confidence            456789999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      +.+|.++..+|++++|+..|+++++..++..
T Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          136 MALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            9999999999999999999999999966543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.03  E-value=3e-09  Score=93.90  Aligned_cols=102  Identities=12%  Similarity=0.055  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~  117 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA  117 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHH
Confidence            4678889999999999999999999999999999     8999999999999999999999999999999999   8888


Q ss_pred             H--HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 L--WRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~--~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +  +.++..+...|++++|+..+.++......
T Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          118 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            8  44555588999999999999998877543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.03  E-value=6.8e-10  Score=91.78  Aligned_cols=90  Identities=16%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV-LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~-l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      .++|..++..|+|++|+..|+++++.+|.     ++. ++.++|.+|..+|++++|+..++++++++|+   +..++++ 
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~-   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD---SPALQAR-   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH-
Confidence            56899999999999999999999999999     888 9999999999999999999999999999999   8888755 


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          497 SQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       497 G~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                             +.+.+++..|+++++..|..
T Consensus        75 -------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -------HHHHHHHHHHCCTTHHHHCC
T ss_pred             -------HHHHHHHHHHHHHhccCccc
Confidence                   67888899999888886643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.02  E-value=2.2e-09  Score=116.87  Aligned_cols=103  Identities=13%  Similarity=-0.065  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|..++..|+|++|++.|.++++++|+     ++.++.++|.+|..+|++++|+..++++++++|+   +..
T Consensus        55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~  126 (568)
T 2vsy_A           55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---EPY  126 (568)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH
Confidence            35778999999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHhchhh
Q 046116          492 SLWRRSQAYDMM---GLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       492 A~~rrG~a~~~L---Gd~dEAL~d~~kALkl~~~  522 (604)
                      +++.+|.++..+   |++++|+..|+++++..+.
T Consensus       127 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A          127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            999999999999   9999999999999999654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.99  E-value=3.7e-10  Score=127.34  Aligned_cols=102  Identities=16%  Similarity=0.017  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..+++.|+|++|+..|+++++++|+     ++.+|+++|.+|..+|+|++|+.++++|++++|+   +.
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~  501 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---EL  501 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CS
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Ch
Confidence            345778999999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++.+|.++..+|++++ +..|++++++.|
T Consensus       502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          502 APKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            999999999999999999 999999999944

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.99  E-value=9.2e-09  Score=98.10  Aligned_cols=68  Identities=16%  Similarity=0.056  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4667889999999999999999999999999999     7899999999999999999999999999999998

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=2.9e-09  Score=97.93  Aligned_cols=107  Identities=9%  Similarity=-0.073  Sum_probs=86.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY-LMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y-lkLgdy~eAI~D~~rALeLdP  484 (604)
                      .++..+..+..+...|..+...|++++|+..|.+++...|+      +..+...+.+. ...++..+|+..++++++++|
T Consensus        32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P  105 (176)
T 2r5s_A           32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD------NSYKSLIAKLELHQQAAESPELKRLEQELAANP  105 (176)
T ss_dssp             SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST
T ss_pred             HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC------hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC
Confidence            34456777888899999999999999999999999888883      33444444332 233455568999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +   +..+++.+|.++..+|++++|+..|+++++..|
T Consensus       106 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  139 (176)
T 2r5s_A          106 D---NFELACELAVQYNQVGRDEEALELLWNILKVNL  139 (176)
T ss_dssp             T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence            9   999999999999999999999999999999954

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=5.7e-09  Score=104.56  Aligned_cols=117  Identities=11%  Similarity=0.047  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHH----------------------
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEA----------------------  471 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~e----------------------  471 (604)
                      ...+...|..+...|++++|+..|+++++.+|+     ++.++.++|.+|+.+|++++                      
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            345556666666666666666666666666666     55666666666666665555                      


Q ss_pred             ------------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          472 ------------AISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       472 ------------AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                                  |+..++++++++|+   +..+++.+|.++...|++++|+..|+++++..|+..   +......+..++
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~---~~~a~~~l~~~~  265 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA---DGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG---GGHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc---cchHHHHHHHHH
Confidence                        45666777888999   999999999999999999999999999999955321   133444444444


Q ss_pred             HH
Q 046116          540 NK  541 (604)
Q Consensus       540 kK  541 (604)
                      ..
T Consensus       266 ~~  267 (287)
T 3qou_A          266 AA  267 (287)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.98  E-value=4.1e-09  Score=100.86  Aligned_cols=100  Identities=15%  Similarity=0.118  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..+...|++++|+..|.++++++|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~  145 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT---DPKVF  145 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC---CHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC---cHHHH
Confidence            567899999999999999999999999999999     8899999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+|...+..+++++|+..|+++++..|
T Consensus       146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p  173 (272)
T 3u4t_A          146 YELGQAYYYNKEYVKADSSFVKVLELKP  173 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999666666799999999999999944

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.97  E-value=3e-09  Score=114.53  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhc
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---------KKPEAAISDTTRALSL  482 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---------gdy~eAI~D~~rALeL  482 (604)
                      ..+..+...|..++..|+|++|+..|.+|++++|+      ..++.++|.+|..+         |++++|+..+++|+++
T Consensus       135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence            35778999999999999999999999999999997      59999999999999         9999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhchh
Q 046116          483 SKTMSSHSKSLWRRSQAYDMM--------GLAKESLMDALTFIGSRM  521 (604)
Q Consensus       483 dPd~~~n~KA~~rrG~a~~~L--------Gd~dEAL~d~~kALkl~~  521 (604)
                      +|+   +..+++.+|.+|..+        |++++|+..|++++++.|
T Consensus       209 ~p~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          209 DVL---DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             CTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             CCC---CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            999   999999999999999        999999999999999955

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.97  E-value=6e-09  Score=94.14  Aligned_cols=87  Identities=13%  Similarity=-0.002  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+.+.|..+++.|+|++|+..|++||+++|.     ++.+|+++|.+|..+|+|++|+.+++++++++|+   +
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~  130 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA---A  130 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---G
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC---C
Confidence            5567789999999999999999999999999999999     8999999999999999999999999999999999   8


Q ss_pred             H-HHHHHHHHHHHHcC
Q 046116          490 S-KSLWRRSQAYDMMG  504 (604)
Q Consensus       490 ~-KA~~rrG~a~~~LG  504 (604)
                      . .....++.+...++
T Consensus       131 ~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A          131 ASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7 44555555554443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.96  E-value=7.8e-09  Score=100.65  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+..+|..++..|+|++|+..|+++++.+|.     .+.++.++|.++..+|++++|+..++++++++|+   +..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~   91 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAV   91 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHH
Confidence            3456789999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ++.+|.++..+|++++|+..|+++++..++.
T Consensus        92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A           92 HAALAVSHTNEHNANAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999986543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=6.4e-09  Score=96.15  Aligned_cols=72  Identities=18%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      ..+..+..+...|..++..|+|++|+..|.+|++++|+     ++.+|+|+|.||..+|++++|+..+++|++++|+
T Consensus        65 ~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34456889999999999999999999999999999999     8999999999999999999999999999999999

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.95  E-value=2.7e-08  Score=96.08  Aligned_cols=103  Identities=22%  Similarity=0.106  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      +..+..+...|..++..|++++|+..|.+++++        .|.     .+.++.++|.+|..+|++++|+..+++++++
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-----VAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999998        555     7889999999999999999999999999985


Q ss_pred             -------------------------------------------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116          483 -------------------------------------------------SKTMSSHSKSLWRRSQAYDMMGLAKESLMDA  513 (604)
Q Consensus       483 -------------------------------------------------dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~  513 (604)
                                                                       +|.   ...+++.+|.+|..+|++++|+..|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT---VTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH---HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                                             355   7889999999999999999999999


Q ss_pred             HHHHhchh
Q 046116          514 LTFIGSRM  521 (604)
Q Consensus       514 ~kALkl~~  521 (604)
                      ++++++.+
T Consensus       302 ~~al~l~~  309 (311)
T 3nf1_A          302 EAAMRSRK  309 (311)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99999844

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.95  E-value=4.7e-09  Score=104.88  Aligned_cols=111  Identities=13%  Similarity=-0.082  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCCCC-
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLML-KKPEAAISDTTRALSLSKTMSS-  488 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALeLdPd~~~-  488 (604)
                      ..+..+.+.|+.+...|+|++|+..|++||++.|... ....+..+.++|.+|... |++++|+..+++|+++.|+... 
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            3578899999999999999999999999999987511 112367899999999995 9999999999999999886110 


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        ...++.++|.++..+|++++|+..|+++++..++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence              1568999999999999999999999999999553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.94  E-value=1.7e-08  Score=106.08  Aligned_cols=104  Identities=12%  Similarity=-0.089  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~  380 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---LPEV  380 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHH
Confidence            4567899999999999999999999999999999     7899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ++.+|.++..+|++++|+..|+++++..++..
T Consensus       381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            99999999999999999999999999977654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.93  E-value=7.2e-09  Score=86.86  Aligned_cols=86  Identities=16%  Similarity=0.067  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|++++|+..|.++++..|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~  116 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETY  116 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHH
Confidence            3668889999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCH
Q 046116          493 LWRRSQAYDMMGLA  506 (604)
Q Consensus       493 ~~rrG~a~~~LGd~  506 (604)
                      ++.+|.++..+|++
T Consensus       117 ~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          117 KSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.92  E-value=1.1e-08  Score=96.94  Aligned_cols=107  Identities=18%  Similarity=-0.032  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC-----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL---  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~-----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL---  482 (604)
                      +..+..+...|..++..|+|++|+..|.+++++.     ++  ....+.++.++|.+|..+|++++|+..+.+++++   
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3468899999999999999999999999999984     22  2237899999999999999999999999999998   


Q ss_pred             -----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          483 -----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       483 -----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                           +|.   ...+++.+|.++..+|++++|+..|+++++....
T Consensus       118 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B          118 VLGKFHPD---VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             HHCTTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                 466   8899999999999999999999999999998443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.89  E-value=1.2e-08  Score=104.40  Aligned_cols=110  Identities=13%  Similarity=-0.006  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cC-
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-----LS-  483 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-----Ld-  483 (604)
                      ...+..+...|..+...|+|++|+..|.+|+++.|.. .....+.++.|+|.+|..+|++++|+..+++|++     .+ 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            3467889999999999999999999999999986541 1334567999999999999999999999999999     45 


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      |.   ...+++.+|.++..+|++++|+..++++++..+..
T Consensus       261 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  297 (383)
T 3ulq_A          261 PS---LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA  297 (383)
T ss_dssp             GG---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            77   89999999999999999999999999999996543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.89  E-value=8.4e-09  Score=87.17  Aligned_cols=83  Identities=8%  Similarity=-0.098  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCH
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKI  531 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i  531 (604)
                      ++.+++++|.+|+.+|+|++|+..++++++++|+   +..+|+.+|.+|..+|++++|+..|++++++.++..   +...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~   79 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG---TQKD   79 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---CHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC---chhH
Confidence            8999999999999999999999999999999999   999999999999999999999999999999966433   2333


Q ss_pred             HHHHHHHHH
Q 046116          532 PYYAAVMIN  540 (604)
Q Consensus       532 ~~~l~rlik  540 (604)
                      ...+..++.
T Consensus        80 ~~~l~~~l~   88 (100)
T 3ma5_A           80 LSELQDAKL   88 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.89  E-value=6.8e-09  Score=98.39  Aligned_cols=104  Identities=16%  Similarity=0.015  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      +..+..+...|..++..|+|++|+..|.+++++        .|.     ...++.++|.+|..+|++++|+..+++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-----VAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999998        355     7899999999999999999999999999999


Q ss_pred             --------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          483 --------SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       483 --------dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                              +|.   ...+++.+|.++..+|++++|+..|+++++..+.
T Consensus       157 ~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          157 YATRLGPDDPN---VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHSCTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                    677   8899999999999999999999999999998554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.88  E-value=1e-08  Score=88.44  Aligned_cols=111  Identities=16%  Similarity=0.225  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---  487 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---  487 (604)
                      ..+..+...|..++..|+|++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.+...   
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            45788999999999999999999999999998664 11223457899999999999999999999999999865511   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ....+++.+|.++..+|++++|+..++++++....
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            12678999999999999999999999999998554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.88  E-value=1.4e-09  Score=99.06  Aligned_cols=94  Identities=10%  Similarity=-0.006  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQA  499 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a  499 (604)
                      .++.++..|+|++|+..|.++++.+|.     ++.++.++|.+|...|++++|+..++++++++|+   +..+++.+|.+
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~   87 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATV   87 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence            345567889999999999999999999     8999999999999999999999999999999999   99999999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHhchh
Q 046116          500 -YDMMGLA--KESLMDALTFIGSRM  521 (604)
Q Consensus       500 -~~~LGd~--dEAL~d~~kALkl~~  521 (604)
                       +...|++  ++|+..|+++++..|
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCC
Confidence             8899999  999999999999943

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=1.3e-08  Score=102.42  Aligned_cols=108  Identities=13%  Similarity=-0.009  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---  488 (604)
                      .+..+.+.|..+.. |+|++|+..|.+|+++.|.. .....+.++.|+|.+|..+|+|++|+..+++++++.|+...   
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            57788999999988 99999999999999998751 11224789999999999999999999999999999776211   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ...+++.+|.++..+|++++|+..|++++ ..|.
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            14588999999999999999999999999 8553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.88  E-value=3.1e-08  Score=85.43  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---SS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---~~  488 (604)
                      .+..+...|..++..|+|++|+..|.+++++.+. ......+.++.++|.++..+|++++|+..+++++++.+..   ..
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            4678899999999999999999999999998654 1223347789999999999999999999999999885431   11


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ...+++.+|.++..+|++++|+..+++++++..
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999843

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.3e-08  Score=87.65  Aligned_cols=83  Identities=13%  Similarity=0.026  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------CCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS------KTM  486 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd------Pd~  486 (604)
                      .+..+...|..+++.|+|++|+..|+++++++|+     ++.++.++|.+|..+|++++|+.+++++++++      |+ 
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-  110 (126)
T 3upv_A           37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-----FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS-  110 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh-
Confidence            4688999999999999999999999999999999     89999999999999999999999999999999      88 


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 046116          487 SSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~L  503 (604)
                        +..++..++.+...+
T Consensus       111 --~~~~~~~l~~~~~~l  125 (126)
T 3upv_A          111 --AREIDQLYYKASQQR  125 (126)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhh
Confidence              888888888776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.87  E-value=3e-09  Score=115.33  Aligned_cols=104  Identities=12%  Similarity=0.062  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+.+.|..+++.|+|++|+..|++|++++|.     ++.++.++|.+|..+|++++|+..+++|++++|+   +..+
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~  110 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA  110 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            4788999999999999999999999999999999     8999999999999999999999999999999999   8889


Q ss_pred             HHHHHHH--HHHcCCHHHHHHHHH-----------HHHhchhhcC
Q 046116          493 LWRRSQA--YDMMGLAKESLMDAL-----------TFIGSRMKCK  524 (604)
Q Consensus       493 ~~rrG~a--~~~LGd~dEAL~d~~-----------kALkl~~~~~  524 (604)
                      +..++.+  +..+|++++|+..++           ++++..+...
T Consensus       111 ~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          111 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            9999988  899999999999999           7777755544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.87  E-value=3.8e-09  Score=95.92  Aligned_cols=93  Identities=11%  Similarity=-0.062  Sum_probs=82.1

Q ss_pred             HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116          435 KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL  514 (604)
Q Consensus       435 e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~  514 (604)
                      ..|.+++.++|+     ++..++++|.+++..|+|++|+..+++++.++|+   +..+++.+|.++..+|++++|+..|+
T Consensus         8 ~~~~~al~~~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A            8 GTIAMLNEISSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             CSHHHHTTCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHcCCHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            468899999999     8999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          515 TFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       515 kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      +++++.     |.+......+.....
T Consensus        80 ~al~l~-----p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           80 YGAVMD-----IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHS-----TTCTHHHHHHHHHHH
T ss_pred             HHHhcC-----CCCchHHHHHHHHHH
Confidence            999994     444445444444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.86  E-value=7e-08  Score=103.24  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccch-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKER-IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~-a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+..+...|..+++.|++++|++.|+++++..|.. ..+.. +.+|.+++.+|.+.|++++|+..++++++++|+   +.
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~  550 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN---DA  550 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---CH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---Ch
Confidence            45678899999999999999999999999983310 00113 789999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+|+.+|.+|...|++++|+..|++++++.|
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999944

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.86  E-value=9.5e-09  Score=93.00  Aligned_cols=82  Identities=11%  Similarity=0.033  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|..++..|+|++|+..|.++++++|.     ++.+|.++|.+|..+|++++|+.+++++++++|+   +..
T Consensus        43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~  114 (164)
T 3sz7_A           43 ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-----YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN---GGS  114 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS---SCC
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---chH
Confidence            35778999999999999999999999999999999     8999999999999999999999999999999999   888


Q ss_pred             HHHHHHHHHH
Q 046116          492 SLWRRSQAYD  501 (604)
Q Consensus       492 A~~rrG~a~~  501 (604)
                      ++++++.+..
T Consensus       115 ~~~~~~l~~~  124 (164)
T 3sz7_A          115 DAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.86  E-value=1.2e-08  Score=109.56  Aligned_cols=100  Identities=14%  Similarity=0.029  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+.+.|..+++.|+|++|+..|++||+++|+     ++.+|+++|.+|..+|+|++|+.++++|++++|+   +..
T Consensus       315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~---~~~  386 (457)
T 1kt0_A          315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---NKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------C
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Confidence            35778999999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHH-HHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMD-ALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d-~~kALkl  519 (604)
                      ++..++.++..+|++++|... |++.+..
T Consensus       387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999988764 4444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=6.8e-08  Score=92.42  Aligned_cols=104  Identities=13%  Similarity=0.001  Sum_probs=81.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccch------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKER------------IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~------------a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      +..+...|++++|+..|+++|+..|+......            .....++|.+|++.|+|.+|+..++++++..|+...
T Consensus       103 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  182 (225)
T 2yhc_A          103 DRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA  182 (225)
T ss_dssp             -----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             chhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence            33334478999999999999999998321111            122367899999999999999999999999999211


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ..++++++|.++..+|++++|+..++.+....|+..
T Consensus       183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          183 TRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            237899999999999999999999999888855443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=9.8e-09  Score=86.99  Aligned_cols=85  Identities=14%  Similarity=0.047  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|++++|+..|.++++++|.     .+.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~  120 (133)
T 2lni_A           49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS---CKEA  120 (133)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---GTHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---chHH
Confidence            4678899999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCC
Q 046116          493 LWRRSQAYDMMGL  505 (604)
Q Consensus       493 ~~rrG~a~~~LGd  505 (604)
                      ++.++.++..+|+
T Consensus       121 ~~~l~~~~~~~~~  133 (133)
T 2lni_A          121 ADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=2e-08  Score=99.78  Aligned_cols=110  Identities=10%  Similarity=0.081  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---  487 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---  487 (604)
                      .+..+...|..++..|+|++|+..|.+|++....  ......+.++.|+|.+|.++|+|++|+..+++|+++.+...   
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            4668999999999999999999999999975221  12344678999999999999999999999999999876511   


Q ss_pred             CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~~  522 (604)
                      ..+.+|+.+|.++..+| ++++|+..|++|+.+...
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~  269 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            12789999999999999 579999999999998543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.83  E-value=4.8e-08  Score=102.54  Aligned_cols=96  Identities=16%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+.+.|..+++.|+|++|+..|++||+++|+     ++.+|+++|.+|..+|+|++|+.++++|++++|+   
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---  339 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---  339 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence            44567889999999999999999999999999999999     8999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHH
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMD  512 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d  512 (604)
                      +..++..++.++..+++++++...
T Consensus       340 ~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          340 DKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.83  E-value=2.3e-08  Score=96.55  Aligned_cols=107  Identities=16%  Similarity=-0.013  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC-----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL---  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~-----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL---  482 (604)
                      +..+..+...|..++..|+|++|+..|.+++++.     ++  ......++.++|.+|..+|++++|+..+++++++   
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD--HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999985     22  2237889999999999999999999999999998   


Q ss_pred             -----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          483 -----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       483 -----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                           +|.   ...+++.+|.++..+|++++|+..|+++++..+.
T Consensus       186 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          186 KLGPDDPN---VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TSCTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                 666   7889999999999999999999999999987544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.82  E-value=4.8e-08  Score=98.05  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---  487 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---  487 (604)
                      ..+..+...|..++..|++++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.+...   
T Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  304 (406)
T 3sf4_A          225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI  304 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence            35678999999999999999999999999998765 11223478999999999999999999999999999866510   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ....+++.+|.++..+|++++|+..|++++++....
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            027799999999999999999999999999996543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.82  E-value=5.3e-08  Score=80.79  Aligned_cols=84  Identities=24%  Similarity=0.268  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|++++|+..|.++++..|.     .+..+.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  113 (125)
T 1na0_A           42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA  113 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHH
Confidence            3567889999999999999999999999999999     7899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcC
Q 046116          493 LWRRSQAYDMMG  504 (604)
Q Consensus       493 ~~rrG~a~~~LG  504 (604)
                      +..+|.++..+|
T Consensus       114 ~~~l~~~~~~~g  125 (125)
T 1na0_A          114 KQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcc
Confidence            999999988765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.81  E-value=3e-08  Score=103.12  Aligned_cols=106  Identities=11%  Similarity=-0.091  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhcCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLM---LKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylk---Lgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ....+...|..++..|++++|+..|.++++..|.... ...+..+.++|.+|..   +|++++|+..++++++++|+   
T Consensus       371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---  447 (514)
T 2gw1_A          371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR---  447 (514)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT---
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc---
Confidence            3567888999999999999999999999999887100 0114489999999999   99999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +..+++.+|.++..+|++++|+..|++++++.|
T Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999944

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.81  E-value=3.7e-08  Score=101.04  Aligned_cols=108  Identities=13%  Similarity=-0.007  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCC
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-----LSKT  485 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-----LdPd  485 (604)
                      ..+..+...|..++..|+|++|++.|.+|+++.+. ......+.++.|+|.+|..+|++++|+..+++|++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            46888999999999999999999999999998542 11234678999999999999999999999999999     7888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                         ...+++.+|.++..+|++++|+..++++++....
T Consensus       260 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          260 ---LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence               8999999999999999999999999999998554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.81  E-value=3.1e-08  Score=98.36  Aligned_cols=108  Identities=9%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---  486 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---  486 (604)
                      .+..+...|..++..|+|++|+..|.+|+++   .|+ .....+.++.|+|.+|..+|+|++|+..+++|+++.++.   
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            4778999999999999999999999999954   554 122234799999999999999999999999999886431   


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhchh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKES-LMDALTFIGSRM  521 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEA-L~d~~kALkl~~  521 (604)
                      .....+|+++|.+|..+|++++| ...|++|+.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            11278999999999999999999 777999998854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.80  E-value=2e-08  Score=93.71  Aligned_cols=98  Identities=10%  Similarity=-0.052  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+.+.|..++..|+|++|+..|+++++++|.     ++.++.++|.+|..+|+|++|+..++++++++|+   +..++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  159 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIR  159 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHH
Confidence            577889999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHhc
Q 046116          494 WRRSQAYDMMGLAKESL-MDALTFIGS  519 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL-~d~~kALkl  519 (604)
                      ..++.++..+++..++. ..|...+..
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          160 NSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988887 445554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.80  E-value=3.8e-08  Score=94.94  Aligned_cols=107  Identities=16%  Similarity=0.178  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SKTM  486 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dPd~  486 (604)
                      .+..+...|..++..|+|++|+..|+++++..|. .....+.++.++|.+|...|++++|+..+++++++      .|. 
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-   81 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-   81 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH-
Confidence            4567888999999999999999999999999998 22233688999999999999999999999999988      445 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                        ...+++.+|.++..+|++++|+..++++++..+..
T Consensus        82 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           82 --EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence              68899999999999999999999999999996653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.80  E-value=1.3e-08  Score=90.44  Aligned_cols=84  Identities=18%  Similarity=0.076  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..++..|+|++|+..|++++.++|+     ++.++.++|.+|..+|++++|+..++++++++|+   +
T Consensus        48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~  119 (142)
T 2xcb_A           48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-----EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA---Q  119 (142)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---C
T ss_pred             CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Confidence            3345778999999999999999999999999999999     8999999999999999999999999999999998   6


Q ss_pred             HHHHHHHHHHHH
Q 046116          490 SKSLWRRSQAYD  501 (604)
Q Consensus       490 ~KA~~rrG~a~~  501 (604)
                      +.....+..+..
T Consensus       120 ~~~~~~~~~~~~  131 (142)
T 2xcb_A          120 PAHEALAARAGA  131 (142)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             cchHHHHHHHHH
Confidence            554444444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.79  E-value=3.3e-08  Score=90.85  Aligned_cols=84  Identities=13%  Similarity=0.025  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCC
Q 046116          428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--SKSLWRRSQAYDMMGL  505 (604)
Q Consensus       428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~KA~~rrG~a~~~LGd  505 (604)
                      ++..+|+..|.++++.+|+     ++.++.++|.++..+|++++|+..++++++++|+   +  ..+++.+|.++..+|+
T Consensus        88 ~~~~~a~~~~~~al~~~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-----NFELACELAVQYNQVGRDEEALELLWNILKVNLG---AQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---TTTTHHHHHHHHHHHHHCS
T ss_pred             cccchHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---cChHHHHHHHHHHHHHhCC
Confidence            3445689999999999999     8999999999999999999999999999999998   5  5699999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 046116          506 AKESLMDALTFIGS  519 (604)
Q Consensus       506 ~dEAL~d~~kALkl  519 (604)
                      +++|+..|+++|..
T Consensus       160 ~~~A~~~y~~al~~  173 (176)
T 2r5s_A          160 GNAIASKYRRQLYS  173 (176)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99999999999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.79  E-value=5.5e-08  Score=101.11  Aligned_cols=108  Identities=11%  Similarity=0.026  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----  485 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----  485 (604)
                      +..+...|..++.+|+|++|++.|++|+++.+.    ......+..|.|+|.+|..+|++++|+.++++++++.+.    
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            566778888999999999999999999887221    111226788889999999999999999999988887432    


Q ss_pred             -CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhchh
Q 046116          486 -MSSHSKSLWRRSQAYDMMG--LAKESLMDALTFIGSRM  521 (604)
Q Consensus       486 -~~~n~KA~~rrG~a~~~LG--d~dEAL~d~~kALkl~~  521 (604)
                       ....+.++..+|.++..+|  +|++|+..|++++++.|
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence             1126778888888877765  58899999999988844

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.79  E-value=2.9e-08  Score=85.29  Aligned_cols=75  Identities=11%  Similarity=-0.038  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..++..|+|++|+..|.++++++|+     ++.++.++|.+|..+|++++|+..++++++++|+   +.
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~   95 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD---DE   95 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cH
Confidence            456889999999999999999999999999999999     8999999999999999999999999999999999   76


Q ss_pred             HHH
Q 046116          491 KSL  493 (604)
Q Consensus       491 KA~  493 (604)
                      ...
T Consensus        96 ~~~   98 (117)
T 3k9i_A           96 TIQ   98 (117)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.79  E-value=9.3e-08  Score=102.27  Aligned_cols=102  Identities=11%  Similarity=-0.126  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..+.+.|++++|++.|+++++..|.     +...+.+++.+|.+.|++++|+..++++++++|+   +..+
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~  477 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLL  477 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHH
Confidence            4668889999999999999999999999999998     7899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |+.+|.++...|++++|+..|+++++..++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999998664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.78  E-value=8.9e-08  Score=96.49  Aligned_cols=99  Identities=10%  Similarity=-0.143  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH----HHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC----YLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~----ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ....+...|..+.+.|++++|+..|.++++.+|+     ..  ..+.+.+    +...|++++|+..++++++.+|+   
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-----~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~---  198 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDED-----AT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP---  198 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-----cH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---
Confidence            4678889999999999999999999999999998     43  2333333    33458999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.+++.+|.++..+|++++|+..|+++++..|
T Consensus       199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999944

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.78  E-value=1.9e-08  Score=88.75  Aligned_cols=70  Identities=10%  Similarity=-0.013  Sum_probs=66.6

Q ss_pred             chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      +.+..+.|+|.++++.|+|++|+..+++||+++|+   ++.+|+++|.+|..+|++++|+.+|++++++.|+.
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            46889999999999999999999999999999999   99999999999999999999999999999997653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.77  E-value=2.4e-08  Score=99.99  Aligned_cols=99  Identities=8%  Similarity=-0.036  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--H
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--S  490 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~  490 (604)
                      ........+..+...+++++|+..|.++++.+|+     ++.++.++|.+|...|++++|+..+.++++++|+   +  .
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~---~~~~  255 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-----DAALATQLALQLHQVGRNEEALELLFGHLRXDLT---AADG  255 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---GGGG
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---cccc
Confidence            3455667777888899999999999999999999     9999999999999999999999999999999999   8  8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .++.+++.++..+|+.++|+..|++++..
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.76  E-value=3.8e-08  Score=100.21  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SK  484 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dP  484 (604)
                      +..+..+...|..++..|+|++|+..|++++++.|. .....+.++.++|.+|..+|++++|+..+++++++      +|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            456788899999999999999999999999999998 22223478999999999999999999999999998      56


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      .   ...+++.+|.+|..+|++++|+..|+++++.....
T Consensus       124 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  159 (411)
T 4a1s_A          124 G---EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL  159 (411)
T ss_dssp             H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            6   88999999999999999999999999999985543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.75  E-value=9.5e-08  Score=92.10  Aligned_cols=110  Identities=20%  Similarity=0.251  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---C
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---S  487 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---~  487 (604)
                      ..+..+...|..++..|++++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.|..   .
T Consensus       221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  300 (338)
T 3ro2_A          221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI  300 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence            35678899999999999999999999999998765 1122347899999999999999999999999999987651   0


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+++.+|.++..+|++++|+..|++++++.+
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            1256899999999999999999999999999843

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.74  E-value=3.9e-08  Score=100.62  Aligned_cols=113  Identities=12%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM--RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS-  487 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~--~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~-  487 (604)
                      ...+..+...|..++..|++++|+..|.+|+++.+...  ....+.++.++|.+|..+|+|++|+..+++|+++.|... 
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            44688999999999999999999999999999966521  334678999999999999999999999999999866511 


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          488 --SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       488 --~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                        ....+++++|.+|..+|++++|+..|++++++....
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  257 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES  257 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence              123689999999999999999999999999975543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=1.8e-08  Score=85.15  Aligned_cols=86  Identities=13%  Similarity=0.133  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+...|..++..|+|++|+..|+++++++|+     ++.+|.++|.+|..+|++++|+..+++++++.|.. .+.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-~~~   77 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-----YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-GTQ   77 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SCH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC-Cch
Confidence            345778999999999999999999999999999999     89999999999999999999999999999998751 134


Q ss_pred             HHHHHHHHHHHH
Q 046116          491 KSLWRRSQAYDM  502 (604)
Q Consensus       491 KA~~rrG~a~~~  502 (604)
                      .+...+...+..
T Consensus        78 ~~~~~l~~~l~~   89 (100)
T 3ma5_A           78 KDLSELQDAKLK   89 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            444444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.73  E-value=5.1e-08  Score=97.84  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SKTM  486 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dPd~  486 (604)
                      .+..+...|..++..|+|++|+..|++++++.|. .....+.++.++|.+|..+|++++|+..+++++.+      .|. 
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-   85 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-   85 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-
Confidence            4667889999999999999999999999999998 22233678999999999999999999999999988      344 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                        ...+++.+|.++..+|++++|+..|+++++..+...
T Consensus        86 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  121 (406)
T 3sf4_A           86 --EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  121 (406)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence              688999999999999999999999999999976543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.73  E-value=5e-08  Score=89.12  Aligned_cols=109  Identities=8%  Similarity=-0.121  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCCCC-
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL---SKTMS-  487 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL---dPd~~-  487 (604)
                      .+..+...|..++..|+|++|+..|.+++++... ......+.++.++|.+|..+|++++|+..+.+++++   .++.. 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            4677888888888888888888888888885322 112336778888888888888888888888888887   33200 


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+++.+|.++..+|++++|+..++++++...
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            1456788888888888888888888888888744

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.72  E-value=3.8e-08  Score=98.94  Aligned_cols=111  Identities=10%  Similarity=-0.088  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--  488 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--  488 (604)
                      ..+..+.+.|+.+...|+|++|+..|.+|+++.+... ....+.++.|+|.+|.. |++++|+..+++|+++.|....  
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            4578899999999999999999999999999965411 12246889999999999 9999999999999999876110  


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          489 -HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       489 -n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                       ...++.++|.+|..+|+|++|+..|++++++.++.
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence             26789999999999999999999999999996653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.69  E-value=1.2e-07  Score=96.60  Aligned_cols=111  Identities=16%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHH
Q 046116          412 LSVFMLKQQGNQEFWAGY-----------------IEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAI  473 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~Gd-----------------yeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI  473 (604)
                      ..+..+...|..++..|+                 |++|+..|.+++++.+. ......+.++.++|.+|..+|++++|+
T Consensus       164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  243 (411)
T 4a1s_A          164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI  243 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            456667777777777777                 77777777777776422 011225567777777777777777777


Q ss_pred             HHHHHHHhcCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          474 SDTTRALSLSKTMS---SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       474 ~D~~rALeLdPd~~---~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+++++++.|...   ....+++.+|.++..+|++++|+..|+++++..+.
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  295 (411)
T 4a1s_A          244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE  295 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            77777777765410   01236777777777777777777777777777553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.69  E-value=1.2e-07  Score=104.14  Aligned_cols=131  Identities=13%  Similarity=-0.046  Sum_probs=102.3

Q ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      +.+.+.+....+....+.+..+..+|+|++|+..|.++|++.-.   ..+...+..+.|+|.+|..+|+|++|+..+.++
T Consensus       298 s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            33445555566777778888888999999999999999997322   124447889999999999999999999999999


Q ss_pred             Hhc-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHH
Q 046116          480 LSL-----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPY  533 (604)
Q Consensus       480 LeL-----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~  533 (604)
                      |++     -|+.+.-..++.++|.+|..+|+|++|+..|++|+++....-.+..+.+..
T Consensus       378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  436 (490)
T 3n71_A          378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD  436 (490)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            976     344111567899999999999999999999999999865544334433433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=1.9e-07  Score=76.89  Aligned_cols=80  Identities=16%  Similarity=0.066  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|+|++|+..|.++++..|.     .+.++.++|.++..+|++++|+..++++++++|+   +..+
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~  108 (118)
T 1elw_A           37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---NPQL  108 (118)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHH
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHH
Confidence            3668899999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHH
Q 046116          493 LWRRSQAY  500 (604)
Q Consensus       493 ~~rrG~a~  500 (604)
                      +..++.+.
T Consensus       109 ~~~l~~~~  116 (118)
T 1elw_A          109 KEGLQNME  116 (118)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99888765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.68  E-value=2.3e-08  Score=100.01  Aligned_cols=68  Identities=22%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+..+.+.|..+++.|+|++|+..|++|++++|+     ++.+++++|.+|..+|++++|+.+++++++++|+
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            4678999999999999999999999999999999     8999999999999999999999999999999997

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=9e-08  Score=95.89  Aligned_cols=104  Identities=7%  Similarity=-0.120  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV-LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~-l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      .+.....+...|..+...|++++|+..|+++|++.|.     ++. +|.+.+.++...|++++|+..+++|++++|.   
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---  166 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---  166 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC---
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---
Confidence            3444555666666666666666666666666666665     443 6666666666666666666666666666666   


Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDM-MGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~-LGd~dEAL~d~~kALkl~~  521 (604)
                      +..+|...+...+. +|++++|+..|+++++.+|
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p  200 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG  200 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            55555544444332 5666666666666666644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.6e-07  Score=77.75  Aligned_cols=68  Identities=4%  Similarity=-0.035  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+..+.++|.+++..|+|++|+..++++++++|+   +..+++.+|.++..+|++++|+..|++++++.|+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            5788999999999999999999999999999999   9999999999999999999999999999999543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.66  E-value=2.2e-08  Score=103.26  Aligned_cols=100  Identities=9%  Similarity=-0.094  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ..+.+.|..+++.|+|++|+..|+++|+++|.     ++.+|+++|.+|..+|+|++|+.+++++++++|+   +..++.
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~  302 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRR  302 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHH
Confidence            47889999999999999999999999999999     8999999999999999999999999999999999   999999


Q ss_pred             HHHHH-HHHcCCHHHHHHHHHHHHhchhh
Q 046116          495 RRSQA-YDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       495 rrG~a-~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .++.+ ....+..+++...|.++++..|+
T Consensus       303 ~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          303 ELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99998 44556778888999999988554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.65  E-value=4e-07  Score=90.38  Aligned_cols=110  Identities=12%  Similarity=-0.032  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hcCCCCC-
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLMLKKPEAAISDTTRAL---SLSKTMS-  487 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL---eLdPd~~-  487 (604)
                      .+......|..+...|+|++|+..|.+|+++.+.... ...+.++.++|.+|..+|+|++|+..+++|+   +..|+.. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            4455667889999999999999999999998765211 1236799999999999999999999999999   4455510 


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ....+++++|.+|..+|+|++|+..|+++++...+
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            01269999999999999999999999999999654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.63  E-value=2.7e-07  Score=73.84  Aligned_cols=67  Identities=16%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+..+.++|.++...|++++|+..++++++++|+   +..+++.+|.++..+|++++|+..|+++++..|
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            6789999999999999999999999999999999   999999999999999999999999999999943

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.62  E-value=1.1e-07  Score=98.72  Aligned_cols=101  Identities=12%  Similarity=0.003  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-------------------CCcHHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-------------------KKPEAA  472 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-------------------gdy~eA  472 (604)
                      .....+...|..+...|++++|+..|.+|++..|+     ++.++.++|.+|...                   +.+++|
T Consensus       245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A  319 (472)
T 4g1t_A          245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA  319 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence            35677889999999999999999999999999999     899999999998653                   347889


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          473 ISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       473 I~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +..++++++++|+   +..+++.+|.++..+|++++|+..|+++++..
T Consensus       320 ~~~~~~a~~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          320 VAHLKKADEANDN---LFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHCTT---TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhcCCc---hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            9999999999999   99999999999999999999999999999883

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.61  E-value=7.6e-08  Score=91.16  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCcccchHHHH----HHHHHHHHHcCCcHHHHHHHHHHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-------CPLKMRKERIVLY----SNRAQCYLMLKKPEAAISDTTRAL  480 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-------~P~~~~~~~a~l~----~NRA~~ylkLgdy~eAI~D~~rAL  480 (604)
                      ..+..|.++|..+.+.|+|++|+..|++||++       +|+     ++.+|    +|+|.++..+|++++|+.+|++|+
T Consensus        55 ~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            35669999999999999999999999999999       999     99999    999999999999999999999999


Q ss_pred             hcCCC
Q 046116          481 SLSKT  485 (604)
Q Consensus       481 eLdPd  485 (604)
                      +++|+
T Consensus       130 el~p~  134 (159)
T 2hr2_A          130 EMIEE  134 (159)
T ss_dssp             HHHHH
T ss_pred             hcCCC
Confidence            99998

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.60  E-value=4.4e-07  Score=88.00  Aligned_cols=97  Identities=13%  Similarity=-0.035  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 046116          411 ELSVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSL  482 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeL  482 (604)
                      +..+..+...|..++.    .+++++|+..|.+|++..       ++.++.++|.+|..    .+++++|+..+++++++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            4456778889999999    999999999999999884       47889999999999    99999999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          483 SKTMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       483 dPd~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                        +   ++.+++.+|.+|..    .|++++|+..|+++++.
T Consensus       108 --~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 --K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             --T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             --C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence              4   67899999999999    99999999999999987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.59  E-value=2.8e-07  Score=91.46  Aligned_cols=111  Identities=12%  Similarity=-0.021  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----CCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK----TMSS  488 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP----d~~~  488 (604)
                      +..+...|..++..|+|++|+..|.+|+++.+.... .....++.++|.+|..+|+|++|+..+++|+++-.    +...
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            456667899999999999999999999997654211 12356899999999999999999999999995321    1011


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ...+++++|.+|..+|+|++|+..+++++++.++..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence            567899999999999999999999999999976543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.59  E-value=2.3e-07  Score=103.16  Aligned_cols=123  Identities=10%  Similarity=-0.013  Sum_probs=107.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC--CcHHHH
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGY----------IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK--KPEAAI  473 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~Gd----------yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg--dy~eAI  473 (604)
                      .++..++....|..+|..+...|+          |++|++.|+++|+.+|.     +..+|++|+.++.+++  +|++|+
T Consensus        55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-----~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcccccHHHHH
Confidence            345566778899999999999888          99999999999999999     9999999999999999  669999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          474 SDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                      .++++++++||.   |..||..|+.++..+| .++++++.+.++++.+     +.+.+.=.....++.+
T Consensus       130 ~~~~k~l~~d~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-----p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          130 ELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-----FSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----CCCccHHHHHHHHHHh
Confidence            999999999999   9999999999999999 9999999999999993     4444444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=3.9e-07  Score=83.16  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      ...+..+...|..+...|+|++|+..|.+++++   .|+ .....+.++.++|.+|..+|++++|+..+++++++.+...
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            346788999999999999999999999999998   332 1113678899999999999999999999999998753310


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          488 ---SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       488 ---~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                         ....++..+|.++..+|++++|+..+++++++...
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence               12456789999999999999999999999998554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2.9e-07  Score=79.46  Aligned_cols=81  Identities=15%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..++..|+|++|+..|.++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+   +..+
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  135 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK---NKVF  135 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS---CHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHH
Confidence            3778999999999999999999999999999999     8999999999999999999999999999999999   9888


Q ss_pred             HHHHHHHHH
Q 046116          493 LWRRSQAYD  501 (604)
Q Consensus       493 ~~rrG~a~~  501 (604)
                      +..++.+..
T Consensus       136 ~~~l~~~~~  144 (148)
T 2dba_A          136 QEALRNISG  144 (148)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            887777653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.58  E-value=2.8e-07  Score=99.72  Aligned_cols=111  Identities=5%  Similarity=-0.101  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-----SKT  485 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-----dPd  485 (604)
                      +....+.+......|+|++|+..|.++|++.-.   ..+...+..+.|+|.+|..+|+|++|+..++++|++     -|+
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            334444455555679999999999999997321   124447889999999999999999999999999976     233


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .+.-...++++|.+|..+|+|++|+..|++|+++....-
T Consensus       378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            111567899999999999999999999999999855443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.58  E-value=2.3e-07  Score=92.93  Aligned_cols=101  Identities=12%  Similarity=-0.038  Sum_probs=90.9

Q ss_pred             HHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCC
Q 046116          411 ELSVF-MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       411 ~~~A~-~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      +.... .+...|+.+.+.|++++|+..|.+|++..|.     ...+|...+..... +|++++|+..++++++++|+   
T Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---  201 (308)
T 2ond_A          130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---  201 (308)
T ss_dssp             SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---
T ss_pred             ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence            33344 7999999999999999999999999999998     67777766666443 79999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +..++..+|..+..+|++++|+..|+++++.
T Consensus       202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999996

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.58  E-value=7.2e-08  Score=91.25  Aligned_cols=73  Identities=19%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC----------
Q 046116          408 KENELSVFMLKQQGNQEFWAGYI----------EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK----------  467 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~Gdy----------eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg----------  467 (604)
                      +..+..++.+.+.|+.+...+++          ++||..|.+||+++|+     .+.+|+|+|.+|..+|          
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-----~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----KDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHhcccCcchhhhh
Confidence            34445788999999999988875          5999999999999999     9999999999999985          


Q ss_pred             -CcHHHHHHHHHHHhcCCC
Q 046116          468 -KPEAAISDTTRALSLSKT  485 (604)
Q Consensus       468 -dy~eAI~D~~rALeLdPd  485 (604)
                       +|++|+..+++|++++|+
T Consensus       105 g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHHhCCC
Confidence             899999999999999999

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.56  E-value=1.7e-07  Score=79.70  Aligned_cols=85  Identities=11%  Similarity=0.032  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+...|..++..|+|++|+..|.++++++|.     .+..+.++|.+|..+|++++|+..++++++++|.. .+..+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~   91 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-----YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR-GDQQV   91 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ccHHH
Confidence            4678899999999999999999999999999999     89999999999999999999999999999999861 03444


Q ss_pred             HHHHHHHHHHc
Q 046116          493 LWRRSQAYDMM  503 (604)
Q Consensus       493 ~~rrG~a~~~L  503 (604)
                      ...+...+..+
T Consensus        92 ~~~l~~~l~~l  102 (115)
T 2kat_A           92 VKELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            44444444333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.56  E-value=2.2e-07  Score=95.28  Aligned_cols=112  Identities=14%  Similarity=0.028  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM--RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--  486 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~--~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--  486 (604)
                      +..+..+...|..++..|++++|+..|.+|+++.+...  ....+.++.++|.+|..+|+|++|+..+.+|+++.+..  
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            45788999999999999999999999999999866521  22467899999999999999999999999999975421  


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          487 -SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       487 -~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                       .....+++++|.+|..+|++++|+..|+++++....
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence             114578999999999999999999999999996543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.55  E-value=3.4e-07  Score=94.67  Aligned_cols=112  Identities=11%  Similarity=-0.045  Sum_probs=100.6

Q ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH----HHc---CCcHHHH
Q 046116          403 SDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY----LML---KKPEAAI  473 (604)
Q Consensus       403 s~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y----lkL---gdy~eAI  473 (604)
                      +...+..+++....|..+|..+...|  ++++|+..++++|..+|.     +..+|++|+.+.    ..+   +++++++
T Consensus        56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----~y~aW~~R~~iL~~~~~~l~~~~~~~~EL  130 (306)
T 3dra_A           56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----NYQIWNYRQLIIGQIMELNNNDFDPYREF  130 (306)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----CCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred             HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----cHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence            34455666778889999999999999  999999999999999999     899999999999    777   8899999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhchhh
Q 046116          474 SDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK--ESLMDALTFIGSRMK  522 (604)
Q Consensus       474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d--EAL~d~~kALkl~~~  522 (604)
                      ..++++++.+|.   |..+|+.|+.++..+|.++  +++..+.++++.++.
T Consensus       131 ~~~~~~l~~~pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A          131 DILEAMLSSDPK---NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence            999999999999   9999999999999999998  999999999998543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.55  E-value=8.5e-07  Score=75.52  Aligned_cols=86  Identities=7%  Similarity=-0.079  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+...|..++..|+|++|+..|.++++..|+  ....+.++.++|.+|..+|++++|+..++++++..|+   +..+.
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~  113 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG---SDAAR  113 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---SHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ChHHH
Confidence            467889999999999999999999999999998  1112889999999999999999999999999999999   87776


Q ss_pred             HHHHHHHHHcC
Q 046116          494 WRRSQAYDMMG  504 (604)
Q Consensus       494 ~rrG~a~~~LG  504 (604)
                      .-+..+....+
T Consensus       114 ~a~~~l~~l~~  124 (129)
T 2xev_A          114 VAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            65555544433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=3.8e-07  Score=101.44  Aligned_cols=127  Identities=9%  Similarity=-0.003  Sum_probs=109.9

Q ss_pred             cChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHH
Q 046116          402 MSDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTR  478 (604)
Q Consensus       402 ms~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~r  478 (604)
                      .....++..++....|..+|..+.+.+  +|++|++.|+++|+++|.     +..+|++|+.+..++| .++++++++++
T Consensus        95 ~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-----N~~aW~~R~~~l~~l~~~~~~el~~~~~  169 (567)
T 1dce_A           95 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTDS  169 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-----cccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            333445666778899999999999999  779999999999999999     9999999999999999 99999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116          479 ALSLSKTMSSHSKSLWRRSQAYDMM--------------GLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK  541 (604)
Q Consensus       479 ALeLdPd~~~n~KA~~rrG~a~~~L--------------Gd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK  541 (604)
                      +|+++|.   +..||+.|+.++..+              +.+++|++.+.+|++..     |.+.+.=.+..-++.+
T Consensus       170 ~I~~~p~---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-----P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          170 LITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----PNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             TTTTTCC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-----SSCSHHHHHHHHHHSC
T ss_pred             HHHHCCC---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-----CCCccHHHHHHHHHhc
Confidence            9999999   999999999999996              66899999999999994     4455555555554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.52  E-value=1.3e-07  Score=82.75  Aligned_cols=72  Identities=14%  Similarity=-0.049  Sum_probs=64.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      ..+..+..+...|..++..|++++|+..|.+|++++|+     ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus        46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           46 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            34446789999999999999999999999999999999     8999999999999999999999999999999998

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.50  E-value=6.7e-07  Score=76.96  Aligned_cols=67  Identities=13%  Similarity=0.041  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+..+.++|.+++..|+|++|+..++++++++|+   +..+++.+|.++..+|++++|+..|+++++..|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p   74 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDG   74 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            7999999999999999999999999999999999   999999999999999999999999999999944

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.48  E-value=9.2e-07  Score=91.45  Aligned_cols=124  Identities=10%  Similarity=-0.105  Sum_probs=107.7

Q ss_pred             HHhHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH--HHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQE----FWA---GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE--AAISDTTR  478 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~l----fk~---GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~--eAI~D~~r  478 (604)
                      ...++....|..++..+    ...   +++++++..++++|+.+|.     +..+|++|+.+..++++++  ++++.+++
T Consensus        97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-----ny~aW~~R~~vl~~l~~~~~~~EL~~~~~  171 (306)
T 3dra_A           97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-----NHHVWSYRKWLVDTFDLHNDAKELSFVDK  171 (306)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            34455677888888888    666   7999999999999999999     9999999999999999999  99999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          479 ALSLSKTMSSHSKSLWRRSQAYDMMGL------AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       479 ALeLdPd~~~n~KA~~rrG~a~~~LGd------~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      +++.||.   |..||..|+.++..+|.      ++++++.+.++++.     +|.+.+.=.+...++.+..+
T Consensus       172 ~i~~d~~---N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          172 VIDTDLK---NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHCTT---CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCC---CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCC
Confidence            9999999   99999999999999998      99999999999999     45555666666666665554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.48  E-value=7.8e-07  Score=73.12  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          456 YSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK-SLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       456 ~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K-A~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ..++|.+++..|+|++|+..++++++++|+   +.. +++.+|.++..+|++++|+..|+++++..|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999   999 999999999999999999999999999944

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.46  E-value=2.7e-06  Score=82.39  Aligned_cols=95  Identities=19%  Similarity=0.049  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116          413 SVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP  484 (604)
                      .+..+...|..++.    .+++++|+..|++|++..       ++.++.++|.+|..    .+++++|+..+++|++++ 
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-  144 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-  144 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence            56778899999999    999999999999999973       57999999999999    999999999999999976 


Q ss_pred             CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          485 TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                          +..+++.+|.+|..    .+++++|+..|+++++.
T Consensus       145 ----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          145 ----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                45899999999999    99999999999999987

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.45  E-value=4.3e-07  Score=74.17  Aligned_cols=67  Identities=13%  Similarity=-0.050  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++..+.++|.++...|++++|+..++++++++|+   +..+++.+|.++..+|++++|+..|+++++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            7888999999999999999999999999999999   999999999999999999999999999999943

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.45  E-value=3.8e-06  Score=84.97  Aligned_cols=109  Identities=16%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC--
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM---RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS--  487 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~---~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~--  487 (604)
                      .+..+...|..++..|+|++|+..|.+++++.+...   ......++.++|.+|..+|++++|+..+++++.+.|...  
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence            466788999999999999999999999999863210   123677889999999999999999999999999987621  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....+++.+|.++...|++++|+..+++++....
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            1457899999999999999999999999998743

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.41  E-value=2.3e-06  Score=92.23  Aligned_cols=116  Identities=7%  Similarity=-0.056  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----C
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-----K  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-----P  484 (604)
                      .+.........+.++|+|++|+..|.+++++.-.   ..+...+..+.|+|.+|..+|+|++|+..+.++|.+.     |
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            3455666677788999999999999999987322   1244578899999999999999999999999999752     3


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCC
Q 046116          485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNR  528 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~  528 (604)
                      +.+.-...++++|.+|..+|++++|+..|++|+++....-.++.
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H  409 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH  409 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            31115678999999999999999999999999998655433333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.40  E-value=1.5e-06  Score=91.09  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=103.3

Q ss_pred             ccChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHH
Q 046116          401 LMSDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTT  477 (604)
Q Consensus       401 ~ms~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~  477 (604)
                      .+....+...++....|..++..+...+  +++++++.++++|+.+|.     +..+|++|+.+...+|. ++++++.++
T Consensus        95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-----Ny~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            3334445566778899999999999998  499999999999999999     99999999999999999 599999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhchhhc
Q 046116          478 RALSLSKTMSSHSKSLWRRSQAYDMM--------------GLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       478 rALeLdPd~~~n~KA~~rrG~a~~~L--------------Gd~dEAL~d~~kALkl~~~~  523 (604)
                      ++|+.+|.   |..||..|+.++..+              +.+++++..+.+++...|++
T Consensus       170 ~~I~~~p~---N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          170 SLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             HHHHHCSC---CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHCCC---CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            99999999   999999999999998              56899999999999995543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.40  E-value=7.6e-07  Score=74.53  Aligned_cols=88  Identities=17%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+..+...|..++..|+|++|+..|.+++++.|..  .....+.++.++|.+|..+|++++|+..++++++++|+    .
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~  112 (131)
T 1elr_A           37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT----P  112 (131)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----H
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----H
Confidence            35678899999999999999999999999998861  00111889999999999999999999999999999886    6


Q ss_pred             HHHHHHHHHHHHcC
Q 046116          491 KSLWRRSQAYDMMG  504 (604)
Q Consensus       491 KA~~rrG~a~~~LG  504 (604)
                      .....++.+...++
T Consensus       113 ~~~~~l~~~~~~~~  126 (131)
T 1elr_A          113 DVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67777777766544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.40  E-value=2.9e-06  Score=72.78  Aligned_cols=81  Identities=10%  Similarity=-0.021  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      +......|+.+|+.|+|..|+..|.+|++..+..  .....+.++.++|.||.++|+++.|+..+++|++++|+   +..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~---~~~   81 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQR   81 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHH
Confidence            5677899999999999999999999999974321  12347899999999999999999999999999999999   988


Q ss_pred             HHHHHH
Q 046116          492 SLWRRS  497 (604)
Q Consensus       492 A~~rrG  497 (604)
                      ++.+++
T Consensus        82 ~~~n~~   87 (104)
T 2v5f_A           82 ANGNLK   87 (104)
T ss_dssp             HHHHHH
T ss_pred             HHhhHH
Confidence            877776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.34  E-value=1.5e-06  Score=91.72  Aligned_cols=114  Identities=7%  Similarity=-0.049  Sum_probs=104.0

Q ss_pred             ccChHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-C-CcHHHHHHHH
Q 046116          401 LMSDEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-K-KPEAAISDTT  477 (604)
Q Consensus       401 ~ms~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-g-dy~eAI~D~~  477 (604)
                      ..+...+..+++....|..+|..+...| .+++++..++++|..+|.     +..+|++|+.++..+ + ++++++..++
T Consensus        75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-----ny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-----SYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            3344456667778889999999999999 599999999999999999     999999999999998 8 9999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhchhh
Q 046116          478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAK--------ESLMDALTFIGSRMK  522 (604)
Q Consensus       478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~d--------EAL~d~~kALkl~~~  522 (604)
                      ++++++|.   |..||+.|+.++..+|.++        +++..+.++++.++.
T Consensus       150 k~L~~dpk---Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          150 GSLLPDPK---NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             HHTSSCTT---CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhCCC---CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            99999999   9999999999999999998        999999999998543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=8e-06  Score=69.73  Aligned_cols=67  Identities=13%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKK---PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgd---y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ++.++..+|.+++..++   .++|...+++||++||+   ++.+++-+|..++..|+|++|+..++++++..|
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            89999999999987766   79999999999999999   999999999999999999999999999999944

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.26  E-value=6.1e-06  Score=86.48  Aligned_cols=107  Identities=10%  Similarity=-0.002  Sum_probs=96.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--cHHHHH
Q 046116          407 MKENELSVFMLKQQGNQEFWAGY----------IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--PEAAIS  474 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~Gd----------yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--y~eAI~  474 (604)
                      +..+++....|..++..+...+.          +++++..++++|..+|.     +..+|++|+.+...+++  +++++.
T Consensus        57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-----ny~aW~hR~wlL~~l~~~~~~~EL~  131 (331)
T 3dss_A           57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWARELE  131 (331)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhccCcccHHHHHH
Confidence            34455677788888888876665          79999999999999999     99999999999999995  899999


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhchh
Q 046116          475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGL-AKESLMDALTFIGSRM  521 (604)
Q Consensus       475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd-~dEAL~d~~kALkl~~  521 (604)
                      .++++++++|.   |..||..|+.++..+|. +++++..+.++++.+|
T Consensus       132 ~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          132 LCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             HHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            99999999999   99999999999999999 6999999999999843

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.23  E-value=9.1e-06  Score=82.14  Aligned_cols=110  Identities=13%  Similarity=0.002  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---C
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---H  489 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---n  489 (604)
                      .+..+...|..++..|++++|+..+.+++...|.........++.++|.+|...|++++|+..+.+++.+.|....   .
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4567788899999999999999999999999886322334568899999999999999999999999998765211   1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+++.+|.++...|++++|+..|+++++....
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  125 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  125 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999998654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.22  E-value=8.3e-06  Score=77.69  Aligned_cols=100  Identities=9%  Similarity=-0.155  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116          413 SVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP  484 (604)
                      .+..+.+.|..++.    .+++++|+..|.+|++..|.   ...+.+++++|.+|..    .+++++|+..+++|+++ |
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~---~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~  159 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES---DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S  159 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS---HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC---cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence            36678889999988    88999999999999999883   0148999999999999    88999999999999998 6


Q ss_pred             CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 046116          485 TMSSHSKSLWRRSQAYDMM-G-----LAKESLMDALTFIGS  519 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~L-G-----d~dEAL~d~~kALkl  519 (604)
                      .   +..+++.+|.+|..- |     ++++|+..|+++++.
T Consensus       160 ~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          160 R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            6   678999999999865 3     899999999999988

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.21  E-value=2.9e-06  Score=89.55  Aligned_cols=125  Identities=10%  Similarity=-0.100  Sum_probs=109.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH--------HHHHHH
Q 046116          407 MKENELSVFMLKQQGNQEFWA-G-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE--------AAISDT  476 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~-G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~--------eAI~D~  476 (604)
                      +...++....|..++..+... + +++++++.++++|+.+|.     +..+|++|+.+..+++.++        ++++.+
T Consensus       116 L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-----Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          116 AVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-----NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-----CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            445556788999999999887 7 999999999999999999     9999999999999999998        999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          477 TRALSLSKTMSSHSKSLWRRSQAYDMMGL-------AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd-------~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      +++|+.+|.   |..||..|+.++..++.       ++++++.+.++++..     |.+.+.=.++.-++.+...
T Consensus       191 ~k~I~~dp~---N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-----P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          191 NEMLRVDGR---NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-----PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHCTT---CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCC
Confidence            999999999   99999999999999997       799999999999994     4555555566666655443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.19  E-value=6e-06  Score=90.62  Aligned_cols=110  Identities=9%  Similarity=-0.068  Sum_probs=93.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--  482 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--  482 (604)
                      +.+..+..+.+.|..+..+|+|++|+.+|.++|++.    +. .++..+..++|+|.+|..+|+|++|+..+.+|+++  
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999872    22 24558999999999999999999999999999975  


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          483 ---SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       483 ---dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                         -|+.+.-.+.+-.+++++..+|.|++|...|+++.+.
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4551113566778999999999999999999998765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.17  E-value=6.4e-06  Score=88.55  Aligned_cols=101  Identities=8%  Similarity=-0.073  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ....+...|..+.+.|++++|+..|.+++++.|.     ++ .+|.+.+.++.+.|++++|+..+++|++..|.   ...
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~---~~~  391 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHH  391 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---CTH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---chH
Confidence            3444444455555555555555555555555444     32 34555555555555555555555555555444   444


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHhchh
Q 046116          492 SLWRRSQA-YDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       492 A~~rrG~a-~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .++..+.. +...|++++|...|+++++.+|
T Consensus       392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p  422 (530)
T 2ooe_A          392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYG  422 (530)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence            44433333 2235555555555555555533

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.13  E-value=1.3e-05  Score=76.32  Aligned_cols=96  Identities=10%  Similarity=-0.166  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116          413 SVFMLKQQGNQEFWAG----YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~G----dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP  484 (604)
                      .+..+...|..+.. +    ++++|+..|.+|++.  .     ++.+++++|.+|..    .+++++|+..+++|++..|
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            36778889999888 6    999999999999764  4     68999999999998    8999999999999999988


Q ss_pred             --CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          485 --TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       485 --d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                        +   ++.+++.+|.+|..    .+++++|+..|+++++.
T Consensus       121 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          121 SDA---AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             SHH---HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             Ccc---hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence              4   58999999999999    89999999999999987

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.10  E-value=1.5e-05  Score=81.90  Aligned_cols=105  Identities=9%  Similarity=-0.153  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CCCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS--KTMSS  488 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd--Pd~~~  488 (604)
                      +... .....|..+++.++|++|+..|++++...+.   .....+++++|.++..+|++++|+..+++++.-.  |.  .
T Consensus       133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~--~  206 (282)
T 4f3v_A          133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK---FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA--C  206 (282)
T ss_dssp             CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT--T
T ss_pred             CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc--c
Confidence            3455 7899999999999999999999988775322   1124689999999999999999999999999654  33  1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ...+++++|.++..+|+.++|...|++++...|
T Consensus       207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            467999999999999999999999999999944

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=1.9e-05  Score=74.21  Aligned_cols=85  Identities=11%  Similarity=0.008  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-C-CCCCCHHHHHHHHHHHHHc
Q 046116          429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLS-K-TMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLd-P-d~~~n~KA~~rrG~a~~~L  503 (604)
                      ....+.+.|.+.+..+|.     +....++.|.|+.+.+   ++.++|..++..++.+ | +   +.+++|.+|.+++++
T Consensus        13 ~l~~~~~~y~~e~~~~~~-----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl   84 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHc
Confidence            356678889999888887     8999999999999999   7779999999999999 7 5   789999999999999


Q ss_pred             CCHHHHHHHHHHHHhchh
Q 046116          504 GLAKESLMDALTFIGSRM  521 (604)
Q Consensus       504 Gd~dEAL~d~~kALkl~~  521 (604)
                      |+|++|+..++.+|+..|
T Consensus        85 ~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCT
T ss_pred             cCHHHHHHHHHHHHhcCC
Confidence            999999999999999944

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.99  E-value=3.1e-05  Score=83.23  Aligned_cols=108  Identities=12%  Similarity=-0.001  Sum_probs=93.0

Q ss_pred             HHHHhHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhcC
Q 046116          406 EMKENELS-VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-YLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       406 dlee~~~~-A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-ylkLgdy~eAI~D~~rALeLd  483 (604)
                      .++..+.. ...+...|+.+.+.|++++|+..|.+|++..|.     ...++...+.. +...|++++|...++++++.+
T Consensus       347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-----~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~  421 (530)
T 2ooe_A          347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY  421 (530)
T ss_dssp             HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-----CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence            33434444 468999999999999999999999999999887     56666665544 557999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      |+   ++.++...+..+..+|++++|...|++++...+
T Consensus       422 p~---~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          422 GD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             CC---CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence            99   999999999999999999999999999999843

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.94  E-value=7.1e-05  Score=67.08  Aligned_cols=88  Identities=11%  Similarity=-0.134  Sum_probs=82.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTMSSHSKSLWR  495 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~~~n~KA~~r  495 (604)
                      .|..++..+.+++|++.|.+|.+.  .     ++...+++|.+|..    .+++++|+..+++|.+.  .   ++.++++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~a~~~   98 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--N-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---DQDGCLI   98 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--C-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C---CHHHHHH
Confidence            888888889999999999999997  3     68999999999999    89999999999999987  5   7899999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          496 RSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       496 rG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                      +|.+|..    .+++++|+..|+++.+.
T Consensus        99 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           99 LGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999999    99999999999999998

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.93  E-value=1.2e-05  Score=82.54  Aligned_cols=96  Identities=13%  Similarity=-0.040  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--HHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--SKS  492 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~KA  492 (604)
                      +.....+..+...|+|++|.+.|..++...|.     .. .++++|.++++.++|++|+..++.++...++   .  ..+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~---~~~~~a  173 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSE-----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK---FLAGAA  173 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---HHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---ccHHHH
Confidence            45566788899999999999999999999998     67 9999999999999999999999988876422   2  358


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ++.+|.++..+|++++|+..|++++..
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDS  200 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.00011  Score=75.22  Aligned_cols=106  Identities=11%  Similarity=-0.035  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCCCHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---MSSHSKS  492 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~~~n~KA  492 (604)
                      ....|..+...|++++|+..|++++...+. ......+.++.++|.+|...|+|.+|+..+.+++..-..   ......+
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  177 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV  177 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            444566666778888888888888887443 112346889999999999999999999999999876322   1125789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      +...|.+|..+|++++|...|++++...+.
T Consensus       178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          178 HLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999988554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.83  E-value=0.00013  Score=77.79  Aligned_cols=99  Identities=15%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHH---------------------------------
Q 046116          414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYS---------------------------------  457 (604)
Q Consensus       414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~---------------------------------  457 (604)
                      +-.+.-+|..++..++   +.+|+.+|.+||+++|+     ++.+|.                                 
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            5666677777776554   57899999999999998     333333                                 


Q ss_pred             -----------HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          458 -----------NRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       458 -----------NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                                 -.|..++..|++++|+..+++|+.++|+    .-+|.-+|.++...|++++|+..|.+|+.+.|
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence                       3444555679999999999999999975    67889999999999999999999999999944

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00017  Score=73.86  Aligned_cols=111  Identities=6%  Similarity=-0.080  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---  488 (604)
                      .+......|..++..|+|++|+..+.+++..... ..+...+.++.+.+.+|..+|+|++|...+++++.+.+....   
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            4677889999999999999999999999987433 224457889999999999999999999999999987643110   


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          489 -HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       489 -n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                       ....+...|..+...|+|++|...|.++++.....
T Consensus       214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~  249 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL  249 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence             24567778999999999999999999999875543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.76  E-value=5.1e-05  Score=64.68  Aligned_cols=73  Identities=15%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .++.+...|..++..++   .++|...+.+||.++|+     ++..+..+|..+++.|+|++|+..++++++.+|+ .++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence            46788899999976665   79999999999999999     8999999999999999999999999999999998 444


Q ss_pred             HH
Q 046116          490 SK  491 (604)
Q Consensus       490 ~K  491 (604)
                      ..
T Consensus        79 ~~   80 (93)
T 3bee_A           79 RV   80 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.69  E-value=0.0003  Score=74.72  Aligned_cols=95  Identities=16%  Similarity=-0.046  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCC
Q 046116          414 VFMLKQQGNQEFWAG---YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       414 A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~  486 (604)
                      +..+...|..++..|   ++++|++.|++|++.  .     ++.+++++|.+|..    .+++++|+..+++|++.  . 
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~-  397 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--G-  397 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--C-
Confidence            456788899888866   899999999999987  3     57899999999999    89999999999999985  4 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhch
Q 046116          487 SSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGSR  520 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl~  520 (604)
                        ++.+++++|.+|..    .+++++|+..|+++++..
T Consensus       398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence              67899999999999    899999999999999995

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.65  E-value=0.00049  Score=73.08  Aligned_cols=96  Identities=11%  Similarity=-0.205  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcC
Q 046116          412 LSVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLS  483 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLd  483 (604)
                      ..+..+...|..++.    .+++++|+..|.+|++..       ++..+.++|.+|..    .+++++|+..+++|++. 
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  144 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-  144 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            466778889999998    899999999999998753       57888899999998    88999999999999875 


Q ss_pred             CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          484 KTMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                       +   ++.+++.+|.+|..    .+++++|+..|+++++.
T Consensus       145 -~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          145 -G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             -T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence             5   78999999999998    88999999999999887

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.65  E-value=0.00035  Score=59.69  Aligned_cols=71  Identities=10%  Similarity=-0.169  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+.-.+.+|..++..++|..|+..+..|++..++    +......+..+|.+++.+|++++|+..+++++++.|
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            35667788999999999999999999999987422    122688899999999999999999999999999944

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.62  E-value=0.00017  Score=76.98  Aligned_cols=86  Identities=15%  Similarity=-0.029  Sum_probs=50.2

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          418 KQQGNQEFWA----GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-Y--LMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       418 k~~GN~lfk~----GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-y--lkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+.|..+...    +++++|+..|.++.   |.     ++.+++++|.+ |  ...+++++|+..+++|++.  +   ++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~  283 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QP  283 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CH
Confidence            4455555443    45666666666655   44     55666666665 3  3556666666666666543  3   45


Q ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 046116          491 KSLWRRSQAYDMMG-----LAKESLMDALTFI  517 (604)
Q Consensus       491 KA~~rrG~a~~~LG-----d~dEAL~d~~kAL  517 (604)
                      .+++.+|.+|. .|     ++++|+..|+++.
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            66666666665 44     6666666666666

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.52  E-value=0.00026  Score=66.50  Aligned_cols=79  Identities=13%  Similarity=-0.103  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          413 SVFMLKQQGNQEFWAG---YIEEAVKKYSKALDLC-PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~-P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+...+.|..+.+.+   +++++|..+++.++.+ |.    ....+++++|..|+++|+|++|...++++|+++|+   
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~----~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~---  103 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---  103 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---
Confidence            4678889999999988   7889999999999998 73    16899999999999999999999999999999999   


Q ss_pred             CHHHHHHHHH
Q 046116          489 HSKSLWRRSQ  498 (604)
Q Consensus       489 n~KA~~rrG~  498 (604)
                      |..|..-+..
T Consensus       104 n~QA~~Lk~~  113 (152)
T 1pc2_A          104 NNQAKELERL  113 (152)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8888654433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.43  E-value=0.00039  Score=75.10  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL  482 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL  482 (604)
                      +.+..+..+.+.|..+..+|+|++|+.+|.++|++.    +. .+...+..++|+|.+|..+|+|++|+..+++|+++
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999872    22 24558999999999999999999999999999976

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.31  E-value=0.00041  Score=74.61  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=74.1

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL----CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--  482 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel----~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--  482 (604)
                      +.+..+..+.+.|..+..+|+|++|+.+|.++|++    .|. .++..+..++|+|.+|..+|+|++|+..+++|+++  
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999986    232 35558999999999999999999999999999975  


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHc
Q 046116          483 ---SKTMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       483 ---dPd~~~n~KA~~rrG~a~~~L  503 (604)
                         -|+.+.-.+.+..++.++..+
T Consensus       403 ~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          403 VTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHH
Confidence               455111234445566665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.31  E-value=0.00097  Score=68.99  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHH-
Q 046116          430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-----KKPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYDM-  502 (604)
Q Consensus       430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-----gdy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~~-  502 (604)
                      ...|.....+||+++|.   -.+..+|.-+|..|.++     |+.++|...+++||+++|+   . ..+++..|..+.. 
T Consensus       179 l~~A~a~lerAleLDP~---~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          179 VHAAVMMLERACDLWPS---YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---HDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---TCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHh
Confidence            57899999999999998   22466999999999996     9999999999999999997   5 8999999999988 


Q ss_pred             cCCHHHHHHHHHHHHhchhhc
Q 046116          503 MGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       503 LGd~dEAL~d~~kALkl~~~~  523 (604)
                      +|++++|...+++++...+..
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGGG
T ss_pred             cCCHHHHHHHHHHHHcCCCCC
Confidence            599999999999999996653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.31  E-value=0.0018  Score=79.03  Aligned_cols=96  Identities=11%  Similarity=-0.001  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC----
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM----  486 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~----  486 (604)
                      ......|.+.|..+.+.|+|++||..|.+|     +     ++..|.+.+.++.++|+|++|+..+..|.+.++++    
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----d-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt 1171 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 1171 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH
Confidence            345678889999999999999999999776     4     68899999999999999999999999988776441    


Q ss_pred             --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116          487 --------------------SSHSKSLWRRSQAYDMMGLAKESLMDALTF  516 (604)
Q Consensus       487 --------------------~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA  516 (604)
                                          ..+...+++.|..++..|+|++|+..|..+
T Consensus      1172 ~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1172 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                                114456778888888888888888888776

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.29  E-value=0.00077  Score=60.24  Aligned_cols=78  Identities=12%  Similarity=0.005  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----c
Q 046116          428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM----M  503 (604)
Q Consensus       428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~----L  503 (604)
                      +++++|+..|.+|.+..+.     .+.    +|.+|...+.+++|+..+++|.+.  .   ++.+++++|.+|..    .
T Consensus         9 ~d~~~A~~~~~~aa~~g~~-----~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM-----FGC----LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-----THH----HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHcCCCH-----hhh----HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCC
Confidence            4789999999999998755     343    899999999999999999999997  5   78999999999999    9


Q ss_pred             CCHHHHHHHHHHHHhc
Q 046116          504 GLAKESLMDALTFIGS  519 (604)
Q Consensus       504 Gd~dEAL~d~~kALkl  519 (604)
                      +++++|+..|+++.+.
T Consensus        75 ~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           75 KDLRKAAQYYSKACGL   90 (138)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcC
Confidence            9999999999999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.28  E-value=0.0036  Score=76.36  Aligned_cols=112  Identities=16%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---------
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---------  485 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---------  485 (604)
                      ..+...|+.++..|+|++|+..|++|             ..|..+|.||.++|+|++|++.+++|...++=         
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            45678999999999999999999885             46888999999999999999999999544430         


Q ss_pred             -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          486 -------------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       486 -------------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                                   -..+++-+..++..|...|.|++|+..++.+|.+     ++....+-..+..+..|.+.
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-----eraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----ChhHhHHHHHHHHHHHhCCH
Confidence                         0014456677888899999999999999999999     34455666666666555433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.27  E-value=0.0039  Score=66.34  Aligned_cols=93  Identities=13%  Similarity=-0.027  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhcCC
Q 046116          413 SVFMLKQQGNQ-E--FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-----KPEAAISDTTRALSLSK  484 (604)
Q Consensus       413 ~A~~lk~~GN~-l--fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-----dy~eAI~D~~rALeLdP  484 (604)
                      .+..+.+.|.. +  ...+++++|+..|.+|++..       ++.+++++|.+|. .|     ++++|+..+++|.   |
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~  315 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G  315 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence            45677888887 3  46789999999999998654       5788999999998 55     9999999999998   7


Q ss_pred             CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          485 TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       485 d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                      +   ++.+++++|.+|..    ..++++|+..|+++.+.
T Consensus       316 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          316 R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            8   89999999988877    34899999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.25  E-value=0.0032  Score=65.44  Aligned_cols=97  Identities=12%  Similarity=-0.031  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---------
Q 046116          414 VFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL---------  482 (604)
Q Consensus       414 A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL---------  482 (604)
                      ......+|...+..|  ++++|+..|+++.+..|+   -....++.|   +++++|+|++|..+++.++++         
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~  249 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPT---WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKEN  249 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence            334445554455555  999999999999988885   002345555   999999999999999988887         


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          483 -SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       483 -dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                       +|+   ++.++.++..+.+.+|+  +|.+.+.++.+..|
T Consensus       250 ~~p~---~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          250 AVLY---KPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHSS---HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             CCCC---CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence             588   99999999999999998  88889999998843

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.10  E-value=0.0016  Score=62.10  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---C-
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---M-  486 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~-  486 (604)
                      -.+.++...++..|.|+.|+-.++.++.+.   |+- .......++...|.+++..++|..|...|++||++...   . 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            457788899999999999999999988774   331 23346778899999999999999999999999865321   0 


Q ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116          487 ------------------SSHSKSLWRRSQAYDMMGLAKESLMDAL  514 (604)
Q Consensus       487 ------------------~~n~KA~~rrG~a~~~LGd~dEAL~d~~  514 (604)
                                        ....+..|+.+.||..++++++|+..++
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                              0012678999999999999999999844

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.09  E-value=0.0027  Score=57.84  Aligned_cols=85  Identities=9%  Similarity=0.015  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhcC-C-CCCCCHHHHHHHHHHHHHc
Q 046116          429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEA---AISDTTRALSLS-K-TMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~e---AI~D~~rALeLd-P-d~~~n~KA~~rrG~a~~~L  503 (604)
                      ....+...|.+++...+.     ....-++.|.++.+..+..+   +|.-+...++-+ | .   ..+.+|.+|..++++
T Consensus        16 ~l~~~~~~y~~e~~~~~~-----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~---~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH---HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHHh
Confidence            345667778888887776     78999999999999988777   999999988877 5 4   678999999999999


Q ss_pred             CCHHHHHHHHHHHHhchh
Q 046116          504 GLAKESLMDALTFIGSRM  521 (604)
Q Consensus       504 Gd~dEAL~d~~kALkl~~  521 (604)
                      |+|++|+..++..|+..|
T Consensus        88 g~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHHhCC
Confidence            999999999999999944

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.00  E-value=0.00097  Score=72.60  Aligned_cols=46  Identities=15%  Similarity=0.060  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                      ...+...|...|++++|+..++.++.+     ++...++-..+.-+..|-+
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHhcC
Confidence            445668899999999999999999999     4455666666666555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.97  E-value=0.0039  Score=64.80  Aligned_cols=102  Identities=7%  Similarity=-0.114  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCcccchHHHHHHHHHH--HHHcC--CcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP---LKMRKERIVLYSNRAQC--YLMLK--KPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P---~~~~~~~a~l~~NRA~~--ylkLg--dy~eAI~D~~rALeLdPd  485 (604)
                      ..+.....+..+.+.|+.+.|.+.+.+..+.+|   +.    +-.+..+++.+  .+..|  ++.+|+..++++.+..|+
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~----~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG----DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc----chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            444444555555555666666666655555555   10    02333334433  44334  566666666665554443


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                         +........ ++..+|++++|..+++..++..|+
T Consensus       211 ---~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          211 ---WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             ---HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             ---cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence               222222222 666667777776666655555443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.64  E-value=0.016  Score=54.75  Aligned_cols=99  Identities=21%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             cchhhhhHHHHhhhcCC-CCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcC
Q 046116           60 EHVLVLSGLFNIAIKQP-DDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG  138 (604)
Q Consensus        60 ~~~~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~  138 (604)
                      -+.-++..|.+++-..| +-..+.+.|++.-...++           ++.+.-+=..|+.++|..+.+..+.....++.|
T Consensus        18 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   86 (252)
T 4hxt_A           18 TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-----------TSTDSEVQKEAARALANIASGPDEAIKAIVDAG   86 (252)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-----------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence            34457777888877665 222344456666555554           334567778999999999999899999999999


Q ss_pred             CcHHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          139 VVLPLMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      +||+|+.+|+.. +.--++.|+++|++|+.+.
T Consensus        87 ~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~  117 (252)
T 4hxt_A           87 GVEVLVKLLTST-DSEVQKEAARALANIASGP  117 (252)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence            999999999964 4556889999999999643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.63  E-value=0.017  Score=61.01  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------KMRKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      ..+.+...|......|+.+.|++.+.+|+.+...                 ...+....+...++..++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4556667777777889999999999999998421                 01123445666788999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +.+++..+|-   +-.+|..+-.+|+..|+..+|+..|+++-+...
T Consensus       194 l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          194 LEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             HHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999999877643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.22  E-value=0.016  Score=61.64  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+..+...+..++..|++++|+..+++|++++|+      ...|..+|.++...|++++|+..+.+|+.++|.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            5667778888888899999999999999999986      678888999999999999999999999999998

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=95.69  E-value=0.047  Score=59.27  Aligned_cols=103  Identities=15%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             cchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhc
Q 046116           60 EHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKS  137 (604)
Q Consensus        60 ~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~  137 (604)
                      .+.-++..+.++--..++.|  ++.+.|++.-...++          .++.|--|-+.||.+++.......+....-|++
T Consensus        92 ~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL----------~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~  161 (529)
T 3tpo_A           92 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  161 (529)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHH----------TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHH----------cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            33345666666543444433  456667665554443          345677788999999999998889999999999


Q ss_pred             CCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116          138 GVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF  173 (604)
Q Consensus       138 ~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  173 (604)
                      |+||+|+.||...-.=| |..|+.|||.||.....+
T Consensus       162 Gaip~Lv~LL~s~~~~v-~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          162 GAIPAFISLLASPHAHI-SEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             THHHHHHHHTTCSCHHH-HHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHcCCCHHH-HHHHHHHHHHHhccCHHH
Confidence            99999999998765544 678999999999875443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.64  E-value=0.0071  Score=57.95  Aligned_cols=116  Identities=17%  Similarity=0.154  Sum_probs=86.0

Q ss_pred             HHHHhhhCCCCCCCCCccchhhhhHHHHhhhc-CCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhh
Q 046116           43 VAQCFKELPLSRLRDDQEHVLVLSGLFNIAIK-QPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIG  121 (604)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~g  121 (604)
                      .-.+++.|..   .|.+.+.-++..|.+++-. .++-..+.+.|++.-...++           ++.+.-+=.+|+.++|
T Consensus        14 ~~~~~~~L~s---~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-----------~~~~~~v~~~a~~~L~   79 (252)
T 4db8_A           14 LPQMTQQLNS---DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALS   79 (252)
T ss_dssp             HHHHHHHHHS---SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence            5566777776   6666666777777776554 22222455556666555544           3445567789999999


Q ss_pred             hhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116          122 SYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF  173 (604)
Q Consensus       122 sy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  173 (604)
                      ..+....+.....++.|+||+|+.+|+.. ++--++.|+++|++|+..+..-
T Consensus        80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~  130 (252)
T 4db8_A           80 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ  130 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchH
Confidence            99998889999999999999999999985 5667899999999998876544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.55  E-value=0.034  Score=52.90  Aligned_cols=85  Identities=21%  Similarity=0.195  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCc-----------------ccchHHHHHHHHHHHHHcCCcHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLKM-----------------RKERIVLYSNRAQCYLMLKKPEA  471 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~~-----------------~~~~a~l~~NRA~~ylkLgdy~e  471 (604)
                      ..++.+.-.|+.+|..++|..|...|++||.+.   |...                 ......+.+..|.||.+++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            468899999999999999999999999998762   1100                 11134788999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116          472 AISDTTRALSLSKTMSSHSKSLWRRSQAY  500 (604)
Q Consensus       472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~  500 (604)
                      ||......    |...+.++...-+|+.|
T Consensus       141 Ai~~Le~I----p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI----PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS----CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC----CchhcCHHHHHHHHHHh
Confidence            99986654    32223566666666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.35  E-value=0.066  Score=48.69  Aligned_cols=78  Identities=12%  Similarity=-0.083  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEE---AVKKYSKALDLC-PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       414 A~~lk~~GN~lfk~Gdyee---AIe~YtkALel~-P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+...+.|..+.+..+-..   +|..+...+.-. |.    ..-.+++.+|..|+++|+|++|...++..|+.+|+   |
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~----~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~---n  107 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---N  107 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---C
Confidence            5667788888888776655   999999988876 52    26789999999999999999999999999999999   8


Q ss_pred             HHHHHHHHH
Q 046116          490 SKSLWRRSQ  498 (604)
Q Consensus       490 ~KA~~rrG~  498 (604)
                      ..|.--+..
T Consensus       108 ~QA~~Lk~~  116 (126)
T 1nzn_A          108 NQAKELERL  116 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887654433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.17  E-value=0.036  Score=60.31  Aligned_cols=103  Identities=17%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------cccchHHHHHHHHHHHHHcCCcHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--------------------MRKERIVLYSNRAQCYLMLKKPEAAI  473 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--------------------~~~~~a~l~~NRA~~ylkLgdy~eAI  473 (604)
                      +..+...|+.+++.|+|++|++.|.+|....++.                    .-...+.-......+|.+.|+|++|+
T Consensus       148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          148 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             TTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            3466677777777777777777777773221110                    00012223344668899999999999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc
Q 046116          474 SDTTRALSLSKTMSSHSKSLWRRSQAYDM--MGLAKESLMDALTFIGS  519 (604)
Q Consensus       474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~--LGd~dEAL~d~~kALkl  519 (604)
                      ..+++++.+++.   +...+..+|.+|.+  .++..|+++.|...+++
T Consensus       228 ~lLe~aL~le~a---h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini  272 (449)
T 1b89_A          228 TMLEAALGLERA---HMGMFTELAILYSKFKPQKMREHLELFWSRVNI  272 (449)
T ss_dssp             HHHHHHTTSTTC---CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred             HHHHHHhCCcHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence            999999999999   99999999887754  56777788777665555

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.16  E-value=0.36  Score=44.83  Aligned_cols=76  Identities=7%  Similarity=-0.162  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      .+...+.+..+.+..+   ..++|..+...+.-.|..    .-.+++.+|..|+++|+|++|...++..|+++|+   |.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~---n~  111 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NK  111 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC---CH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cH
Confidence            5566777777777765   457999999999988852    6788888999999999999999999999999999   87


Q ss_pred             HHHHHH
Q 046116          491 KSLWRR  496 (604)
Q Consensus       491 KA~~rr  496 (604)
                      .|.--+
T Consensus       112 QA~~Lk  117 (144)
T 1y8m_A          112 QVGALK  117 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.11  E-value=0.019  Score=53.37  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      -++..|.+++...|+. ..+.+.|++.-+..|+.           +.+.-|=..|+.++|..+....+.....++.|+||
T Consensus        31 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~   99 (210)
T 4db6_A           31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP   99 (210)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHH
Confidence            4777777877544322 23445566666665553           34556777899999999988889999999999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +|+.+|... +.--++.|+.+|++|+.+..
T Consensus       100 ~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~  128 (210)
T 4db6_A          100 ALVQLLSSP-NEQILQEALWALSNIASGGN  128 (210)
T ss_dssp             HHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHcCC-cHHHHHHHHHHHHHHHcCCH
Confidence            999999877 56678899999999997543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.93  E-value=0.019  Score=54.84  Aligned_cols=96  Identities=20%  Similarity=0.185  Sum_probs=73.5

Q ss_pred             hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      .++..|+|++...++- ..+.+.|++.-+..++           ++.+.-+=..|+.++|..+....+.....++.|+||
T Consensus       115 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  183 (252)
T 4db8_A          115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP  183 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence            4777888887655544 4455556665555544           344566778999999999998888888899999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      +|+++|... ..--+..|+++|+.|+++.
T Consensus       184 ~L~~ll~~~-~~~v~~~a~~~L~~l~~~~  211 (252)
T 4db8_A          184 ALVQLLSSP-NEQILQEALWALSNIASGG  211 (252)
T ss_dssp             HHHHGGGCS-SHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHHhcCC
Confidence            999999987 4445889999999999654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.81  E-value=0.25  Score=45.45  Aligned_cols=79  Identities=8%  Similarity=-0.150  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ++...+.+..+.+..+   ...+|..+...+...|..    .-.+++.+|..+.++|+|+.|...++..|+++|+   |.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~---N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT---CH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---CH
Confidence            4566677777776664   468999999999888842    6888999999999999999999999999999999   88


Q ss_pred             HHHHHHHHH
Q 046116          491 KSLWRRSQA  499 (604)
Q Consensus       491 KA~~rrG~a  499 (604)
                      .|.--+..+
T Consensus       113 QA~~Lk~~I  121 (134)
T 3o48_A          113 QVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            876444333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.81  E-value=0.13  Score=53.32  Aligned_cols=69  Identities=14%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCC
Q 046116          413 SVFMLKQQGNQEFWA-----GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~-----GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd  485 (604)
                      ....+.-.|..+.+.     |+.++|.++|.+||+++|+.    +...+...|..+.. .|++++|...+++|+..+|.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~----~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH----DPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT----CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            466888999999984     99999999999999999971    38888888999988 59999999999999999887

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.75  E-value=0.091  Score=59.82  Aligned_cols=103  Identities=9%  Similarity=-0.134  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAV-KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-------  483 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAI-e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-------  483 (604)
                      ...+.|...+.-+...|+.++|+ ..|.+|+..+|.     ...+|...|......|+++.|...+++++..-       
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~  415 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL  415 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence            34667888888888889989997 999999999998     78899999999999999999999999999752       


Q ss_pred             ----CCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          484 ----KTMS--------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       484 ----Pd~~--------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                          |.+.        .....|...+......|..+.|...|.+|++.
T Consensus       416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                4200        03457888888888889999999999999887

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.75  E-value=0.47  Score=54.81  Aligned_cols=62  Identities=19%  Similarity=0.101  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ...-+..++.-+..+|+|+-|+..-.+|+...|.     ....|+.+|.||.++|+|+.|+-.++.+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-----eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-----SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4557888899999999999999999999999999     8999999999999999999999777665

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=94.61  E-value=0.02  Score=58.71  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             hhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116           64 VLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP  142 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  142 (604)
                      ++..|.|++-.+|+-+ .|..-|.+.-...|+..           .+.-+=--|+-.|+..+-...+..+..|++|+|||
T Consensus       145 A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----------~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            5566666665555433 46677888777777653           23334456777787777777788888999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116          143 LMELLRGKISWVEERVAVRALGHLASH  169 (604)
Q Consensus       143 l~~~~~~~~~wve~r~~~r~l~h~a~~  169 (604)
                      |++||+.. .--=|..|++||+.|++.
T Consensus       214 Lv~LL~~~-d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTE-HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence            99999976 445578999999999988

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=94.52  E-value=0.042  Score=51.08  Aligned_cols=66  Identities=17%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +++.+.-+=..|+..|+..+....+.....+++|+||+|+++|+.. ..--+..|+++|+.+++.+.
T Consensus        21 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A           21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc
Confidence            4455666778899999999988899999999999999999999987 66778899999999997654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.38  E-value=0.11  Score=55.69  Aligned_cols=97  Identities=18%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             hhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116           63 LVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP  142 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  142 (604)
                      -++..|+|++...|+.+....-|++..+..|+           ++.+.-|=..|+.+++..+-...+..+..+..|+||+
T Consensus       222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-----------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          222 NATWTLSNFCRGKPQPSFEQTRPALPALARLI-----------HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            47888999998876655544556666666655           3345567778999999999888888888899999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          143 LMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       143 l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      |+++|... ++--+..|+++||.|++...
T Consensus       291 Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~  318 (528)
T 4b8j_A          291 LVELLLHP-SPSVLIPALRTVGNIVTGDD  318 (528)
T ss_dssp             HHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHcCC-ChhHHHHHHHHHHHHHcCCH
Confidence            99999877 56778999999999998653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=94.26  E-value=0.02  Score=60.10  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=73.1

Q ss_pred             CCCCCCCCCccchhhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhc---------------------------CC--
Q 046116           50 LPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGI---------------------------TD--  100 (604)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~---------------------------~~--  100 (604)
                      ||-   .+++....++..|+|+|-..-+=..+.+.|+.+.+..|+....                           .+  
T Consensus        41 ~~~---~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~  117 (354)
T 3nmw_A           41 MPA---PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA  117 (354)
T ss_dssp             CCC---GGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             CCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            555   4444455688899999875222334678899999998885310                           11  


Q ss_pred             chh--------------hccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhh
Q 046116          101 KEW--------------LLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGH  165 (604)
Q Consensus       101 ~~~--------------~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h  165 (604)
                      ..+              |++..+.-+--.|+-.++.-+.+ .++....-+++|+||||+++|...-+.--++.|++||++
T Consensus       118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n  197 (354)
T 3nmw_A          118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN  197 (354)
T ss_dssp             HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            111              11122222223445555555554 234455556899999999986433366678899999999


Q ss_pred             hhhcc
Q 046116          166 LASHD  170 (604)
Q Consensus       166 ~a~~~  170 (604)
                      |+++.
T Consensus       198 Ls~~~  202 (354)
T 3nmw_A          198 LSAHC  202 (354)
T ss_dssp             HHTTC
T ss_pred             HHccC
Confidence            99954

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.22  E-value=0.037  Score=52.25  Aligned_cols=96  Identities=23%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      -++..|+|++...|+. ..+.+.|++.-...++           ++.+.-+=..|+.+++..+....+.....++.|+||
T Consensus        63 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  131 (252)
T 4hxt_A           63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLL-----------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE  131 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-----------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            4778888887653321 1223335555555544           345667778999999999988889999999999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      +|+++|+..- +--++.|+++|++|+++.
T Consensus       132 ~L~~~l~~~~-~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A          132 VLVKLLTSTD-SEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHHTTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence            9999999665 445889999999999864

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.98  E-value=0.32  Score=44.70  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          452 RIVLYSNRAQCYLMLKKP---EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy---~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+..-+|.|.|+.+..+.   ..+|.-+...++-+|..  ....+|.+|.+++++|+|++|+.....+|+..|+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            478888899999988754   46999999999988841  5789999999999999999999999999999443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.95  E-value=0.5  Score=43.88  Aligned_cols=68  Identities=10%  Similarity=-0.049  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          452 RIVLYSNRAQCYLMLKKP---EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy---~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ....-+|.|.|+.+..+.   .++|.-++..++-+|..  ....+|.+|..++++|+|++|+...+..|+..|
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            578888999999998865   46999999999988841  678899999999999999999999999999944

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.93  E-value=0.23  Score=56.49  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 046116          430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAI-SDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKE  508 (604)
Q Consensus       430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI-~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dE  508 (604)
                      .+.....|.+||..+|.     .+.+|...|.-....|+.++|+ ..+.+|+...|.   +...++..+......|++++
T Consensus       325 ~~Rv~~~Ye~aL~~~p~-----~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~  396 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCF-----APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---SAVLAFSLSEQYELNTKIPE  396 (679)
T ss_dssp             HHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHH
Confidence            34567899999999999     9999999999999999999998 999999999999   88889999999999999999


Q ss_pred             HHHHHHHHHhch
Q 046116          509 SLMDALTFIGSR  520 (604)
Q Consensus       509 AL~d~~kALkl~  520 (604)
                      |...|+++++..
T Consensus       397 aR~iyek~l~~l  408 (679)
T 4e6h_A          397 IETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.62  E-value=0.26  Score=52.75  Aligned_cols=102  Identities=10%  Similarity=-0.106  Sum_probs=81.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CCCCCCHHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS----KTMSSHSKS  492 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd----Pd~~~n~KA  492 (604)
                      ...|..++..|+|.+|+..+++.++.+.. ..+.....++......|..++++.++-..+++|....    ++  +...|
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~--p~i~a  180 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP--PKVQG  180 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC--HHHHH
Confidence            37899999999999999999999987544 2234577889999999999999999999999987654    22  12334


Q ss_pred             --HHHHHHHHH-HcCCHHHHHHHHHHHHhchh
Q 046116          493 --LWRRSQAYD-MMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 --~~rrG~a~~-~LGd~dEAL~d~~kALkl~~  521 (604)
                        ...-|..+. ..++|.+|..+|-++++...
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence              444588888 89999999999999986643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=93.57  E-value=0.026  Score=62.66  Aligned_cols=65  Identities=22%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccch-hhHHHHHHHHhhhhhhcc
Q 046116          106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKIS-WVEERVAVRALGHLASHD  170 (604)
Q Consensus       106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~-wve~r~~~r~l~h~a~~~  170 (604)
                      ++.+.-+=..|+.+++..+.+..+..+..++.|+||+|+++|.-.=+ +--+..|++||++|+++.
T Consensus       273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~  338 (644)
T 2z6h_A          273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  338 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence            44566677889999999998888888889999999999999985432 566788999999998754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=93.41  E-value=0.13  Score=54.91  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=82.3

Q ss_pred             CCCccchhhhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHH
Q 046116           56 RDDQEHVLVLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKA  134 (604)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~a  134 (604)
                      .|++-+.-+...|.|++...|+.- .+...|.+.-+..|+.           ..|.-+-..|+..++.-+....+.-..-
T Consensus        14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-----------s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A           14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-----------SPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-----------SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            344455567888888875444322 6778888888877764           2345566789999988887767777777


Q ss_pred             HhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHh
Q 046116          135 VKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVAL  178 (604)
Q Consensus       135 v~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~  178 (604)
                      +++|+||+|++||+..-+---|+-|+.||+.|++++.+=.+|.+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~  126 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA  126 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh
Confidence            89999999999998333445578899999999999766555653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=93.40  E-value=0.058  Score=58.66  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=67.2

Q ss_pred             hhhHHHHhhhcCCCCCCCc--cccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCc
Q 046116           64 VLSGLFNIAIKQPDDPEFP--SLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVV  140 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~~~~~--~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~  140 (604)
                      +...|.|++...++.+.+.  .-|++.-..           .|++..+.-+-..|+-.|+.-+.+ ..+.-..-+++|+|
T Consensus       220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV-----------~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI  288 (458)
T 3nmz_A          220 AGMALTNLTFGDVANKATLCSMKGCMRALV-----------AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV  288 (458)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCHHHHHHHH-----------HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHhCCCcccHHHHHHcCCcHHHHH-----------HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCH
Confidence            5566777776544333322  223344333           344555666778888888887775 34555566789999


Q ss_pred             HHHHHHhcccchhhHHHHHHHHhhhhhhcc-cchHHHH
Q 046116          141 LPLMELLRGKISWVEERVAVRALGHLASHD-KTFEAVA  177 (604)
Q Consensus       141 ~~l~~~~~~~~~wve~r~~~r~l~h~a~~~-~~f~~~~  177 (604)
                      |||+++|...-+.--++.|++||+.|+++. ..=+.|.
T Consensus       289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999998644336667889999999999953 3334443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=93.04  E-value=0.17  Score=58.10  Aligned_cols=94  Identities=20%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             hhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHH
Q 046116           64 VLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPL  143 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l  143 (604)
                      ++..|.|++-..|+..-+  -|++.....|+    .+       .+.-+=..|+.+++..+.+..+.....++.|+||+|
T Consensus       380 a~~~L~~L~~~~~~~~~~--~~~i~~Lv~lL----~~-------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L  446 (780)
T 2z6g_A          380 CLWTLRNLSDAATKQEGM--EGLLGTLVQLL----GS-------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL  446 (780)
T ss_dssp             HHHHHHHHHTTCTTCSCC--HHHHHHHHHHT----TC-------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHhccchhhhhh--hhHHHHHHHHH----cC-------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            556666777655442211  23444333333    33       344455789999999999988888889999999999


Q ss_pred             HHHhcccchh-hHHHHHHHHhhhhhhcc
Q 046116          144 MELLRGKISW-VEERVAVRALGHLASHD  170 (604)
Q Consensus       144 ~~~~~~~~~w-ve~r~~~r~l~h~a~~~  170 (604)
                      +++|.-.-++ --+..|+++||+|++..
T Consensus       447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~  474 (780)
T 2z6g_A          447 VRTVLRAGDREDITEPAICALRHLTSRH  474 (780)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            9999864455 56788999999998643

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.03  E-value=0.13  Score=51.08  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             hhhhHHHHhhhcCC-CCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQP-DDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      -+...|.|++...| +.-.+.+.|.+.-.-.|+.           ..+.-+-..|+..++.-+....+.-..-+++|.||
T Consensus        29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-----------s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~   97 (233)
T 3tt9_A           29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-----------VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVP   97 (233)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHH
Confidence            46677888886554 4446677888776666553           34556778899999998887667777777999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA  177 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  177 (604)
                      ||+.||+..=++--|+-|+.||.+|++++..=+.|.
T Consensus        98 ~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~  133 (233)
T 3tt9_A           98 RLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI  133 (233)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH
Confidence            999999843367789999999999999887544443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.61  E-value=0.25  Score=57.00  Aligned_cols=60  Identities=12%  Similarity=0.033  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116          454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF  516 (604)
Q Consensus       454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA  516 (604)
                      .++.-=|.-.+..|+|+-|+..+++|+.+.|.   ..+.|++++.+|..+|+|+.|+-.+.-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444566677889999999999999999999   9999999999999999999999885554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=92.19  E-value=0.26  Score=52.87  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             hhhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      -++..|+|++... |.-+....-|++..+..|+.           +.+.-|=..|+.+|+..+-...+..+..++.|+||
T Consensus       234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  302 (530)
T 1wa5_B          234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  302 (530)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence            3677888888765 44443334466666666542           34456678899999999988777778888999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +|+++|... +|--+..|+++||++++...
T Consensus       303 ~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          303 RLVELLSHE-STLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHCCC-ChhhHHHHHHHHHHHHcCCH
Confidence            999999854 67778899999999998653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.80  E-value=1.5  Score=41.39  Aligned_cols=103  Identities=13%  Similarity=-0.071  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCCcc---cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116          416 MLKQQGNQEFWAGYI------EEAVKKYSKALDLCPLKMR---KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM  486 (604)
Q Consensus       416 ~lk~~GN~lfk~Gdy------eeAIe~YtkALel~P~~~~---~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~  486 (604)
                      .|..-...+-+.|+.      +.-++.|.+|+..-|....   +-++-+|.+-| .+..+++.++|-..++.++++... 
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKk-   92 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKK-   92 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHH-
Confidence            444444444444665      7888999999998876211   12456666666 446779999999999999999777 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        .++.|...|+--...|+...|.+.+.+|+..+++
T Consensus        93 --FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           93 --FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             --BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence              8999999999999999999999999999999654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=91.64  E-value=0.52  Score=48.46  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=73.1

Q ss_pred             hhhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      .++..|+|++... |..+....-|++..+..++.           +.+.-+=..|+..++..+-+..+.....++.|+||
T Consensus       169 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  237 (450)
T 2jdq_A          169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR  237 (450)
T ss_dssp             HHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence            4778888888765 44332223577777776653           23445667889999999888777788888999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +|+++|.. -.|--+..|+++|+.+++...
T Consensus       238 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  266 (450)
T 2jdq_A          238 RLVELLMH-NDYKVVSPALRAVGNIVTGDD  266 (450)
T ss_dssp             HHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHCC-CchhHHHHHHHHHHHHhhCCh
Confidence            99999984 467778899999999998653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.62  E-value=0.44  Score=50.85  Aligned_cols=104  Identities=11%  Similarity=-0.070  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCC--H
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSH--S  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n--~  490 (604)
                      ...+...|..+++.|++++|++.|.++.+.+..  ......++.+...+++..++|..+....++|-.+-... ...  .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~  208 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN  208 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence            346778999999999999999999999998765  23467888888999999999999999999997663321 112  2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      +.....|..+...++|.+|...|..++..
T Consensus       209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            33445677888899999999999888765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=91.34  E-value=0.15  Score=57.22  Aligned_cols=103  Identities=15%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             hhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCcH
Q 046116           64 VLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVVL  141 (604)
Q Consensus        64 ~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~~  141 (604)
                      +...|.|+|... ++--.+.+.|.+.-+..|+.           ..|.-+=..|+-.++.-+.. ..+.-..-+++|+||
T Consensus        68 Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-----------s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp  136 (584)
T 3l6x_A           68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-----------HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP  136 (584)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-----------CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-----------CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHH
Confidence            555566666422 22223556666666555543           34666778999999999885 477777788999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA  177 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  177 (604)
                      ||++||+.--+..-|+.|+.||.+|++++..=.+|.
T Consensus       137 ~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~  172 (584)
T 3l6x_A          137 ALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV  172 (584)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence            999999953344458999999999999887666665

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=90.82  E-value=0.22  Score=53.26  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             HHHHHHhhhCCCCCCCCCccchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhh
Q 046116           41 AKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAH  118 (604)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah  118 (604)
                      ..|....+-|-.   .|.+-+.-++..|-+++-..+++|  ++..-|++.-+..++..          +.+.-|=..|+.
T Consensus        74 ~~l~~lv~~L~s---~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----------~~~~~v~~~A~~  140 (528)
T 4b8j_A           74 ESLPAMIGGVYS---DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----------EDFPQLQFEAAW  140 (528)
T ss_dssp             -CHHHHHHHHTS---SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----------CCCHHHHHHHHH
Confidence            345566666533   333344446666666665544332  34455666666655532          223567788999


Q ss_pred             hhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          119 IIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       119 ~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      ++|...-...++....+++|+||+|+.+|... +.--++.|++||+.|+....
T Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~  192 (528)
T 4b8j_A          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSP  192 (528)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCh
Confidence            99999988889999999999999999999875 66678899999999987644

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=90.46  E-value=0.34  Score=52.41  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=72.2

Q ss_pred             cchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhc
Q 046116           60 EHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKS  137 (604)
Q Consensus        60 ~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~  137 (604)
                      .+.-++..+.++--..++-|  +...-|++--.-.|+          .+..|.-|=++||-+++...-...+....-|++
T Consensus        73 ~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL----------~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~  142 (510)
T 3ul1_B           73 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  142 (510)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHT----------TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHH----------CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            33346666666644433333  445556554444433          345566777899999998877778888888999


Q ss_pred             CCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116          138 GVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF  173 (604)
Q Consensus       138 ~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  173 (604)
                      |+||+|+++|+..=. --|+.|+.|||.||.....+
T Consensus       143 GaIp~Lv~lL~s~~~-~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          143 GAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHH
Confidence            999999999987544 34788999999999875544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=88.54  E-value=0.36  Score=51.77  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             HHHHHHhhhCCCCCCCCCccchhhhhHHHHhhhcCCCCCC---CccccHHHHHHHHHHhhcCCchhhccCC-cccchhhh
Q 046116           41 AKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPE---FPSLGIFECMTKLIHKGITDKEWLLRDQ-NIYIPYYA  116 (604)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~lg~~~~~~~l~~~~~~~~~~~~~~~-~~~~~yy~  116 (604)
                      ..|..+++.|-.   .|.+-+..++..|-+++-. .++|.   +..-|++.-+..++           .+. |.-|=+.|
T Consensus        87 ~~i~~lv~~L~s---~~~~~~~~A~~~L~~ll~~-~~~~~~~~~~~~g~i~~Lv~~L-----------~~~~~~~v~~~A  151 (530)
T 1wa5_B           87 QELPQMTQQLNS---DDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFM-----------RENQPEMLQLEA  151 (530)
T ss_dssp             CCHHHHHHHHSC---SSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTT-----------STTSCHHHHHHH
T ss_pred             HHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCC-CCCccHHHHHHCCCHHHHHHHh-----------CCCCCHHHHHHH
Confidence            446666766644   3322333455555555433 23332   23334444333322           232 66778899


Q ss_pred             hhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          117 AHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       117 ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +.++|...-...++...-+..|+||+|+++|... +.--++.|+++|++|++...
T Consensus       152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~  205 (530)
T 1wa5_B          152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDST  205 (530)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCc
Confidence            9999999887788888888999999999999854 55568889999999998653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.51  E-value=6.3  Score=42.73  Aligned_cols=98  Identities=7%  Similarity=-0.088  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ...+...-+.+.+.|++++|.+.|.+..+.  .|+      ...|+.+-.+|.+.|++++|...+++..+..-.  ++..
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~  176 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEP  176 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHH
Confidence            456777778889999999999999998875  465      788888889999999999999999998864311  2578


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      .|.-+-.++...|+.++|...+++.-+.
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999887665

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=88.12  E-value=1.2  Score=46.98  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccch---HHHHHHHHhcC
Q 046116           63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNK---AHFAEKAVKSG  138 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~---~~~~~~av~~~  138 (604)
                      -+...|+|++...|+. ..+.+.|++..+..++...         +.+--+-..|+.++|..+.+.   +......+..|
T Consensus       285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~  355 (529)
T 1jdh_A          285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY  355 (529)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC
Confidence            3677788887643311 1233456777766666542         122345678999999888753   33555677899


Q ss_pred             CcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116          139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA  177 (604)
Q Consensus       139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~  177 (604)
                      +||+|+.+|+..-+|--++.|+.+|+.++.....-..+.
T Consensus       356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  394 (529)
T 1jdh_A          356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR  394 (529)
T ss_dssp             CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHH
Confidence            999999999988789999999999999998776554444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.65  E-value=3.4  Score=42.15  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      .+.+++.|+.++|++.....|+-+|.     ++.+...+.+.+.-.|+|+.|...++.+.+++|+
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~-----da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPK-----DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            35678999999999999999999999     9999999999999999999999999999999999

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=87.65  E-value=0.15  Score=53.41  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             hhhHHHHhhh---cCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCC
Q 046116           64 VLSGLFNIAI---KQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGV  139 (604)
Q Consensus        64 ~~~~~~~~~~---~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~  139 (604)
                      +...|||++.   ..|+. ..+.+-|++.....|+..           .+.-+=-.|+-+|+..+....+.....+++|+
T Consensus       238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  306 (354)
T 3nmw_A          238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-----------HSLTIVSNACGTLWNLSARNPKDQEALWDMGA  306 (354)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-----------CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence            4555666665   22221 123344555555555432           33346677888999988877888888899999


Q ss_pred             cHHHHHHhcccchhhHHHHHHHHhhhhhhcccc
Q 046116          140 VLPLMELLRGKISWVEERVAVRALGHLASHDKT  172 (604)
Q Consensus       140 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~  172 (604)
                      ||||++||+.+-.-| ++.|+.||..|+++...
T Consensus       307 i~~Lv~LL~s~~~~i-~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          307 VSMLKNLIHSKHKMI-AMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHTTTTCSSHHH-HHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHH-HHHHHHHHHHHHcCCHH
Confidence            999999998875544 89999999999987554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=87.40  E-value=0.45  Score=48.57  Aligned_cols=127  Identities=19%  Similarity=0.206  Sum_probs=84.5

Q ss_pred             ccC-CCchhhhHHHHHHhhh-CCCCCCCCC-----ccchhhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchh
Q 046116           31 MNE-QPPSLRRAKVAQCFKE-LPLSRLRDD-----QEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEW  103 (604)
Q Consensus        31 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~  103 (604)
                      |+- +|+..|...+-..++. .|.+++..+     +..+.++.-|-+..-..++=..|.++|.+.   .|+.       -
T Consensus        20 ~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~---~Lv~-------~   89 (296)
T 1xqr_A           20 MRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMH---LLVG-------R   89 (296)
T ss_dssp             CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH---HHHH-------T
T ss_pred             HcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHH---HHHH-------H
Confidence            444 4667777777777774 465432221     133334444444432222222467788875   3433       2


Q ss_pred             hccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcc--cchhhHHHHHHHHhhhhhhc
Q 046116          104 LLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRG--KISWVEERVAVRALGHLASH  169 (604)
Q Consensus       104 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~--~~~wve~r~~~r~l~h~a~~  169 (604)
                      |++..+--|=-+|+-+||.-.-+..+.....++.|+||||+.||+-  ..+  -++-|+.||+-|+.+
T Consensus        90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~--v~~~A~~ALsnl~~~  155 (296)
T 1xqr_A           90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT--VRVKALFAISCLVRE  155 (296)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH--HHHHHHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHcC
Confidence            4455667777899999999999999999999999999999999983  332  378899999999754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.07  E-value=2.7  Score=46.15  Aligned_cols=81  Identities=15%  Similarity=0.060  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      .-+...|...--...+..|...|.+|+.+.|.     ....|+.+|..+...|+.-+|+-+|.+++.....   +..|.-
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P---f~~a~~  224 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP---FPAAST  224 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC---CHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC---ChhHHH
Confidence            46778899988889999999999999999999     8999999999999999999999999999998877   888888


Q ss_pred             HHHHHHHHc
Q 046116          495 RRSQAYDMM  503 (604)
Q Consensus       495 rrG~a~~~L  503 (604)
                      ++...+...
T Consensus       225 nL~~~f~~~  233 (497)
T 1ya0_A          225 NLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=86.48  E-value=0.67  Score=47.61  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             hhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          103 WLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       103 ~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      -++++.+.-|-..|+.++|...-...++....++.|+||+|+.+|...-++--++.|+++|++|+.+.
T Consensus       114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            34566777888999999999988888888888899999999999997677888999999999999765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=86.24  E-value=1.5  Score=47.45  Aligned_cols=66  Identities=24%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +++.+--|=..|+..++.-+-+..+.....+.+|+||+|++||+.. +.--|+-|+||||.++++..
T Consensus       260 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~  325 (529)
T 3tpo_A          260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTD  325 (529)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             hcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccch
Confidence            3445555667889999888888888888889999999999999875 45568899999999998753

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=85.05  E-value=19  Score=34.88  Aligned_cols=94  Identities=12%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hcC--CCC-----
Q 046116          416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL--SLS--KTM-----  486 (604)
Q Consensus       416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL--eLd--Pd~-----  486 (604)
                      --.-.+-.+|-.|+|..|+-...     .-+     .+...+..+.||.++++|..|+...+..|  +++  |+.     
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lN-----T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLH-----KLN-----TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHH-----TCC-----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             HHhhhhhhhhhcchHhHHHHHHH-----hcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            34467888999999988876642     222     45666668999999999999999999999  333  320     


Q ss_pred             -----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          487 -----SSHSKS-LWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       487 -----~~n~KA-~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                           +..-+- +.-+|..+.+.|+-+||+..|....+.
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence                 113333 344799999999999999999998876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=84.47  E-value=4.5  Score=43.66  Aligned_cols=103  Identities=11%  Similarity=-0.144  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-----------------------------------cchHHHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-----------------------------------KERIVLYSN  458 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-----------------------------------~~~a~l~~N  458 (604)
                      ...|...+.-+...|+.++|...|.+|+.. |....                                   .....+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            567888888888999999999999999999 98210                                   001123444


Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchh
Q 046116          459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRM  521 (604)
Q Consensus       459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~  521 (604)
                      .+....+.++.+.|...+.+| +..+.   ....|...|..-+..+ +.+.|...|+.+++..+
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            444444567788899999999 43333   5667777787777777 59999999999999854

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=84.45  E-value=4.7  Score=46.90  Aligned_cols=132  Identities=15%  Similarity=0.112  Sum_probs=82.8

Q ss_pred             CCCccchhhhhHHHHhhhc---CCCCCCCccccH---HHHHHHHHHhhc--------------------CCchhhcc---
Q 046116           56 RDDQEHVLVLSGLFNIAIK---QPDDPEFPSLGI---FECMTKLIHKGI--------------------TDKEWLLR---  106 (604)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~---~p~~~~~~~lg~---~~~~~~l~~~~~--------------------~~~~~~~~---  106 (604)
                      .|+.=+..++++||+++-.   .|..|.|-+-++   .....+|+..+=                    ..+..+..   
T Consensus       342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g  421 (810)
T 3now_A          342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA  421 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence            3444566899999999864   344566765333   444455554441                    11122222   


Q ss_pred             ----------CCcccchhhhhhhhhhhccchH----------------------------HHH----HHHHhcCCcHHHH
Q 046116          107 ----------DQNIYIPYYAAHIIGSYTMNKA----------------------------HFA----EKAVKSGVVLPLM  144 (604)
Q Consensus       107 ----------~~~~~~~yy~ah~~gsy~~~~~----------------------------~~~----~~av~~~~~~~l~  144 (604)
                                ..+.-|-|.|+.++|.-|-..+                            +|-    +.-+++|+||+|+
T Consensus       422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV  501 (810)
T 3now_A          422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC  501 (810)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence                      2345577999999998876331                            233    4567999999999


Q ss_pred             HHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHH
Q 046116          145 ELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNI  190 (604)
Q Consensus       145 ~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~  190 (604)
                      .||+-.-. -=|.-|++||+.||+.+..=..|..++  +++.=+++
T Consensus       502 ~LL~s~s~-~vqe~Aa~aL~NLA~d~~~r~~Vv~~G--aip~Lv~L  544 (810)
T 3now_A          502 ALAKTESH-NSQELIARVLNAVCGLKELRGKVVQEG--GVKALLRM  544 (810)
T ss_dssp             HHHTCCCH-HHHHHHHHHHHHHHTSHHHHHHHHHTT--HHHHHHHH
T ss_pred             HHHcCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHH
Confidence            99985332 237789999999998765445555543  45544444

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=84.03  E-value=1.3  Score=47.75  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             hhhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      -+...|+|+|...|+.- .+.+.|++.....|           ++..+.-|=.+|+-.+|....+.+++....++.|+||
T Consensus       120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l-----------L~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~  188 (510)
T 3ul1_B          120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISL-----------LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID  188 (510)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-----------TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-----------HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH
Confidence            36778888886433221 23445555554444           4556777889999999999999999999999999999


Q ss_pred             HHHHHhcccc----hhhHHHHHHHHhhhhhhcccchHHH
Q 046116          142 PLMELLRGKI----SWVEERVAVRALGHLASHDKTFEAV  176 (604)
Q Consensus       142 ~l~~~~~~~~----~wve~r~~~r~l~h~a~~~~~f~~~  176 (604)
                      ||+.+|...-    +---+|.|+.+|..++......+.+
T Consensus       189 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  227 (510)
T 3ul1_B          189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  227 (510)
T ss_dssp             HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence            9999998532    2334788999999998876555443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=83.40  E-value=0.88  Score=47.93  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             hhhhHHHHhhhcCCCCCC-CccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116           63 LVLSGLFNIAIKQPDDPE-FPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL  141 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~~~-~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~  141 (604)
                      .++..|+|++...++..+ +-+.|++.-+..++.           +.+.-+=..++.+++..+...++....-++.|+||
T Consensus       120 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----------~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~  188 (529)
T 1jdh_A          120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----------KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ  188 (529)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence            588888888887654322 224566665555543           23444556677888888887788888888999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHH
Q 046116          142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAV  176 (604)
Q Consensus       142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~  176 (604)
                      +|+.+|+..-..+-+..|.++|..|+++...=..+
T Consensus       189 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  223 (529)
T 1jdh_A          189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI  223 (529)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence            99999998777777778999999999876543333

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.49  E-value=4.4  Score=33.37  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=35.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116          406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL  446 (604)
Q Consensus       406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~  446 (604)
                      +.++.+.....-...|..+...|++++|+.++.+||..+|.
T Consensus         9 d~e~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A            9 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            44555566777889999999999999999999999999998

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=82.34  E-value=0.85  Score=49.49  Aligned_cols=59  Identities=19%  Similarity=0.100  Sum_probs=47.1

Q ss_pred             chhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          112 IPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       112 ~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      |=-.|+-+|+..+....+.....+++|+||||++||+.+=.- -+++|+-||.+|+++..
T Consensus       395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~-v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH-HHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCCH
Confidence            334567777777766677788888999999999999877444 48999999999998753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=81.70  E-value=1.6  Score=43.17  Aligned_cols=73  Identities=19%  Similarity=0.143  Sum_probs=48.8

Q ss_pred             hhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhc-ccchHHHHhhHHHHHHHHHHH
Q 046116          115 YAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASH-DKTFEAVALYEVEIIELAKNI  190 (604)
Q Consensus       115 y~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~-~~~f~~~~~~~~~~~~~~~~~  190 (604)
                      .||-.|..-+.+..+--..-+++|+||||++||+-. +=.-|+.|+.||..|++. +..=.+|.+++  .|+.-+++
T Consensus        29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G--aI~~Lv~l  102 (233)
T 3tt9_A           29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELN--GVPRLLQV  102 (233)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcC--CHHHHHHH
Confidence            455556555554444445556899999999999874 445699999999999984 33335565543  44444444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.79  E-value=13  Score=39.82  Aligned_cols=108  Identities=11%  Similarity=-0.106  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS----LSKTMS  487 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe----LdPd~~  487 (604)
                      .+.--...+..++..|+|.+|.........- .....+.....++..-...|+..++|..|....+++..    ..+.+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            3555677899999999999999999887643 22223445677888889999999999999999998742    222211


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      ....-+...|..+...++|.+|-..|.++++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            122345557899999999999999999998863

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.56  E-value=3.9  Score=41.68  Aligned_cols=60  Identities=10%  Similarity=-0.104  Sum_probs=55.3

Q ss_pred             HHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116          461 QCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       461 ~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ...++.|+.++|++.+...++-+|.   +.+....+-+.+.-.|+++.|...++.+.+++|..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            4567889999999999999999999   99999999999999999999999999999995543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	604
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 12/141 (8%), Positives = 40/141 (28%), Gaps = 8/141 (5%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
             +  ++E+ AG  E A +   +     P     +   +    +  +   ++ + +   +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEP-----DNTGVLLLLSSIHFQCRRLDRSAHFS 56

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAA 536
           T A+  +      +++       Y   G  +E++      +  +               A
Sbjct: 57  TLAIKQN---PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113

Query: 537 VMINKQMNATWPFIHAKSKMC 557
               +     +      +   
Sbjct: 114 AGDMEGAVQAYVSALQYNPDL 134

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAIS 474
             L    N +   G IEEAV+ Y KAL++ P     E    +SN A       K + A+ 
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQEALM 360

Query: 475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMG 504
               A+ +S T    + +          M 
Sbjct: 361 HYKEAIRISPT---FADAYSNMGNTLKEMQ 387

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP-----------LKMRK 450
            +DEE  ++      +K++GN+ F    I EA+ KY +ALD               K + 
Sbjct: 8   YTDEEKVQSAFD---IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 64

Query: 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510
             I    N A CY   K    AI   ++ L + K        L   +  +  +  AKE+L
Sbjct: 65  IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 124

Query: 511 MDAL 514
             A 
Sbjct: 125 YKAA 128

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
           L  +G         + A+  +S   D            +  N    Y +LK    A    
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHS--------RICFNIGCMYTILKNMTEAEKAF 59

Query: 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516
           TR+++  K ++             +   LA + L +AL  
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 6/159 (3%)

Query: 405 EEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYL 464
           ++++E+ +       +       G  +EA +    AL+  P      RIV  S   +   
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 465 MLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK------ESLMDALTFIG 518
              +   +++   +   +++       +LW   Q  +++          E+   A   I 
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 519 SRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMC 557
            +   +      +    A ++            A+S + 
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478
           ++G +    G +  AV  +  A+   P     + +  +          ++   AIS   R
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDP-----KHMEAWQYLGTTQAENEQELLAISALRR 78

Query: 479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523
            L L     +   +L        +   A E L D L +  +    
Sbjct: 79  CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 29/97 (29%)

Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCP-----------------------------LK 447
           LK+QGN+ F      EA   Y +A+   P                             L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 448 MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484
           +  + +  +    QC L ++  + AI++  RA SL+K
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 13/123 (10%)

Query: 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----------KMRKE 451
           M  +E  E      ++K++G   F  G   +AV +Y K +    +               
Sbjct: 6   MDTKEKLEQ---AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 62

Query: 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLM 511
            +  + N A CYL L++   A+    +AL L                  +    AK    
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122

Query: 512 DAL 514
             L
Sbjct: 123 KVL 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	604
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.76
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.75
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.72
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.35
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.22
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.11
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.04
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.88
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.49
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.42
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.31
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.27
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.22
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.46
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.39
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.13
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.1
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.51
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.58
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	91.34
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	88.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	86.78
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	86.29
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	84.57
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	81.85
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	81.69
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	81.22

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=6.8e-18  Score=155.08  Aligned_cols=103  Identities=31%  Similarity=0.396  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ++.++++||.+|+.|+|++|+..|++||+++|.     ++.+|.|+|.||+++|+|++|+.+|++|++++|+   ++++|
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-----~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~---~~~a~   75 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH   75 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC---cHHHH
Confidence            778999999999999999999999999999999     9999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      +++|.+|..+|++++|+.+|++++++.|+..
T Consensus        76 ~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=6e-18  Score=154.20  Aligned_cols=128  Identities=27%  Similarity=0.326  Sum_probs=110.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----------ccchHHHHHHHHHHHHHcCCcHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-----------RKERIVLYSNRAQCYLMLKKPEAAISDT  476 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~  476 (604)
                      ++....+..++++||.+|+.|+|.+|+..|++||.+.|...           ......+|+|+|.||+++|+|++|+.+|
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            46677899999999999999999999999999999877511           1234578999999999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116          477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM  543 (604)
Q Consensus       477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk  543 (604)
                      ++||+++|+   +.++|+++|.+|..+|++++|+.+|+++++++     |.+..+...+..+.++.+
T Consensus        91 ~~al~~~p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          91 SKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHH
T ss_pred             hccccccch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHH
Confidence            999999999   99999999999999999999999999999994     455556666666555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.75  E-value=6.4e-18  Score=155.89  Aligned_cols=127  Identities=22%  Similarity=0.269  Sum_probs=109.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------cccchHHHHHHHHHHHHHcCCcHHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK----------MRKERIVLYSNRAQCYLMLKKPEAAISDTT  477 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~----------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~  477 (604)
                      .+....+..+++.||.+|+.|+|.+|+..|++||.+.|..          .......+|.|+|.||+++|+|++|+.+++
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            4566789999999999999999999999999999986551          122356789999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116          478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ  542 (604)
Q Consensus       478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq  542 (604)
                      ++++++|+   +.++|+++|.+|..+|++++|+.+|.+++++     +|.+..+...+..+..+.
T Consensus        89 ~al~l~p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          89 KALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Confidence            99999999   9999999999999999999999999999999     445555555555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.2e-18  Score=156.74  Aligned_cols=130  Identities=22%  Similarity=0.197  Sum_probs=114.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ccchHHHHHHHHHHHHHcCCcHHHHHHHH
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM----------RKERIVLYSNRAQCYLMLKKPEAAISDTT  477 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~  477 (604)
                      +++...+..+++.|+.+|++|+|++|+..|++||++.|...          ......+|.|+|.||+++|+|++|+.+++
T Consensus         7 ~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~   86 (170)
T d1p5qa1           7 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN   86 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhh
Confidence            45666899999999999999999999999999999988621          23456789999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116          478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA  545 (604)
Q Consensus       478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~  545 (604)
                      +||+++|+   ++++++++|.+|..+|++++|+.+|++++++     +|.+..+...+..+..+.++.
T Consensus        87 ~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          87 KALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccc---chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHH
Confidence            99999999   9999999999999999999999999999999     455666777777776655554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.3e-18  Score=146.66  Aligned_cols=112  Identities=25%  Similarity=0.308  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..++++|+.+|+.|+|++|+..|+++|+++|+     ++.+|.++|.||.++|++++|+.+++++++++|+   ++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~   73 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKG   73 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----chhhhhcccccccccccccccchhhhhHHHhccc---hhhH
Confidence            4678999999999999999999999999999999     9999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV  537 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r  537 (604)
                      |+++|.++..+|++++|+..|+++++..|     .+..+...+.+
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~  113 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGLKHEA-----NNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHH
Confidence            99999999999999999999999999944     44444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.4e-17  Score=147.95  Aligned_cols=116  Identities=28%  Similarity=0.315  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      ..+.++.++.+||.+|+.|+|++|+..|++||+++|+     ++.+|.|+|.||+.+|++++|+.++++||+++|+   +
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~---~   77 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---Y   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh-----hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc---c
Confidence            3457899999999999999999999999999999999     9999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM  538 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl  538 (604)
                      .++|+++|.++..+|++++|+.+|++++++.     |.+..+...+.+.
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-----p~~~~~~~~l~~~  121 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHH
Confidence            9999999999999999999999999999994     3444444444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.9e-16  Score=145.37  Aligned_cols=126  Identities=22%  Similarity=0.221  Sum_probs=107.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116          407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------KMRKERIVLYSNRAQCYLMLKKPEAAISD  475 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D  475 (604)
                      .......+..++..|+.+|..|+|++|+..|++||.+.+.           ...+..+.++.|||.||.++|+|++||.+
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            3444556788999999999999999999999999986442           12344788999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116          476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN  540 (604)
Q Consensus       476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik  540 (604)
                      |++||+++|+   ++++|+++|.+|..+|++++|+.+|++++++.     |.+..+...+..+..
T Consensus       100 ~~~al~~~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-----p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         100 CLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence            9999999999   99999999999999999999999999999994     445445555555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=134.81  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC----
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS----  488 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~----  488 (604)
                      .|..+++.|+.+|..|+|++|+.+|+++|+++|+     ++.++.|+|.||.++|+|++|+.++++||+++|+...    
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            5889999999999999999999999999999999     8999999999999999999999999999999998211    


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116          489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS  519 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl  519 (604)
                      ..++|+++|.++..++++++|+..|.+++..
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            1468888999999999999999999999987

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1e-13  Score=131.07  Aligned_cols=103  Identities=19%  Similarity=0.095  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+..+|..++..|+|++|+..|++||+++|+     ++.+|+++|.+|..+|++++|+.+++++++++|+   +.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~  105 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YN  105 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-----CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh---hh
Confidence            346889999999999999999999999999999999     8999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++++|.++..+|++++|+..|+++++..|
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999954

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.46  E-value=3.6e-13  Score=121.92  Aligned_cols=113  Identities=14%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-------RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP  484 (604)
                      ..+......|+.+|..|+|++|+..|++||++.|...       ....+.+|.|+|.||.++|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3456667779999999999999999999999987621       112468999999999999999999999999998865


Q ss_pred             CC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          485 TM--------SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       485 d~--------~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      ..        .....+|+++|.+|..+|++++|+.+|++++++.++..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            31        01456899999999999999999999999999977654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.45  E-value=3e-13  Score=116.55  Aligned_cols=95  Identities=13%  Similarity=-0.020  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW  494 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~  494 (604)
                      ....+.|..+++.|++++|+..|+++|..+|+     ++.+|.++|.+|.++|++++|+.++++|++++|+   +..+++
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~   88 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHA   88 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc-----cchhhhhhhhhhhhhhhHHHhhcccccccccccc---cccchH
Confidence            34567899999999999999999999999999     8999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 046116          495 RRSQAYDMMGLAKESLMDALTFI  517 (604)
Q Consensus       495 rrG~a~~~LGd~dEAL~d~~kAL  517 (604)
                      .+|.+|..+|++++|++.++++|
T Consensus        89 ~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999886

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.8e-13  Score=125.24  Aligned_cols=99  Identities=15%  Similarity=0.056  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+.++|..++.+|+|++|++.|+++   .|.     ++.+++|+|.+|..+|+|++|+.+|++||+++|+   ++.+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~-----~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a   72 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDP-----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVA   72 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC-----CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhh
Confidence            4667889999999999999999999863   455     5789999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |+++|.+|..+|++++|+.+|+++++..+.
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999987543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-11  Score=116.57  Aligned_cols=104  Identities=18%  Similarity=0.167  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+...|..++..|++++|+..|++++..+|+     .+.+|.++|.+|..+|++++|+..++++++++|+   ++.++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~  243 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSR  243 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccc-----cccchhhhhhcccccccchhHHHHHHHHHHHhhc---cHHHH
Confidence            567889999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKH  525 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d  525 (604)
                      +.+|.+|..+|++++|+..|++|+++.|++..
T Consensus       244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         244 YNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            99999999999999999999999999876553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.6e-12  Score=118.35  Aligned_cols=103  Identities=17%  Similarity=0.078  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-----
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-----  488 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-----  488 (604)
                      +..+.+.|+.++..|+|++|++.|++||+++|+     .+.+|+|||.+|.++|+|++|+.++++|+...|.+..     
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-----~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-----hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            456889999999999999999999999999999     9999999999999999999999999999988665210     


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          489 --------HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       489 --------n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                              ..++++++|.++..+|++++|+..|.+++++.+
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence                    258899999999999999999999999999854

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.9e-12  Score=113.18  Aligned_cols=96  Identities=8%  Similarity=-0.026  Sum_probs=87.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCCC--HHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLSKTMSSH--SKS  492 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLdPd~~~n--~KA  492 (604)
                      -+..|.+...++|++|.+.|.++|.++|.     ++.+++|+|.|+++.+   ++.+||..+++++..+|.   +  ..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~---~~~~~~   74 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK---EEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---HHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC---chHHHH
Confidence            35778899999999999999999999999     9999999999999755   556799999999999986   4  459


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      +|.+|.+|..+|++++|+..|+++|++.|
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999944

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-11  Score=116.37  Aligned_cols=115  Identities=18%  Similarity=0.056  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ..+..+...|..++..|++++|++.|.+++...|.     ....+.+++.++..+|++++|+..++++++++|+   ++.
T Consensus       269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~  340 (388)
T d1w3ba_         269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAA  340 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---CHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-----cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence            35678889999999999999999999999999999     8999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116          492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI  539 (604)
Q Consensus       492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli  539 (604)
                      +++.+|.++..+|++++|+..|++++++.|     .+......+..++
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~lg~~~  383 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRISP-----TFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-----TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHH
Confidence            999999999999999999999999999944     4433444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.9e-12  Score=125.97  Aligned_cols=114  Identities=9%  Similarity=0.066  Sum_probs=103.5

Q ss_pred             ccChHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116          401 LMSDEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA  479 (604)
Q Consensus       401 ~ms~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA  479 (604)
                      ......++.++.....+..+|+.+...| ++++|+..|+++|+++|+     +..+|.+||.++..+|++++|+.+++++
T Consensus        64 ~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-----~~~a~~~~~~~~~~l~~~~eAl~~~~ka  138 (315)
T d2h6fa1          64 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIADI  138 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-----hhhHHHHHhHHHHhhccHHHHHHHHhhh
Confidence            4444556677788999999999999876 599999999999999999     8999999999999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ++++|+   +..+|+.+|.++..+|++++|+.+|+++++++|.
T Consensus       139 l~~dp~---n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         139 LNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             hhhhhc---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            999999   9999999999999999999999999999999543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.4e-11  Score=120.80  Aligned_cols=104  Identities=12%  Similarity=0.005  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~rALeLdPd~~~n  489 (604)
                      ++.++.+...|..+.+++.+++|++.|++||+++|.     +..+|++||.++..+|+ +++|+.+++++++++|+   +
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-----~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~---~  111 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---N  111 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---C
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh---h
Confidence            456778888899999999999999999999999999     99999999999999975 89999999999999999   9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      ..+|+.+|.++..+|++++|+..|.++++++|+
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence            999999999999999999999999999999554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.9e-11  Score=115.22  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046116          418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS  497 (604)
Q Consensus       418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG  497 (604)
                      .+.|+.+|+.|+|++|+..|+++++.+|+     ++.++.++|.+|..+|+|++|+..++++++++|+   ++.+++.+|
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~   74 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLG   74 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Confidence            35799999999999999999999999999     8999999999999999999999999999999999   999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhchh
Q 046116          498 QAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       498 ~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+|..+|++++|+..+..+++..+
T Consensus        75 ~~~~~~g~~~~A~~~~~~~~~~~~   98 (388)
T d1w3ba_          75 NVYKERGQLQEAIEHYRHALRLKP   98 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHhhhhcccccccccccccccccc
Confidence            999999999999999999999843

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.9e-11  Score=114.14  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR  496 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr  496 (604)
                      ..++|..+++.|+|++|+..|+++|+.+|+     ++.+|.++|.+|..+|++++|+..+++|++++|+   +..+++.+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l   93 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-----HMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMAL   93 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---cccccccc
Confidence            457899999999999999999999999999     8999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          497 SQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       497 G~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      |.++..+|++++|+..++++++..+.
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~  119 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPA  119 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             cccccccccccccccchhhHHHhccc
Confidence            99999999999999999999998554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.2e-11  Score=98.83  Aligned_cols=88  Identities=10%  Similarity=-0.030  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK  491 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K  491 (604)
                      ++...+.|+.+++.|+|++|+..|.+|+++.|..  .....+.++.|+|.||.++|++++|+..+++||+++|+   +..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~---~~~   81 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQR   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC---CHH
Confidence            5677899999999999999999999999986651  22346889999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHHcC
Q 046116          492 SLWRRSQAYDMMG  504 (604)
Q Consensus       492 A~~rrG~a~~~LG  504 (604)
                      ++.+++.....++
T Consensus        82 a~~Nl~~~~~~l~   94 (95)
T d1tjca_          82 ANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999987766553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=3.7e-11  Score=108.19  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          423 QEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML----------KKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       423 ~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL----------gdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+-+.+.|++|+..|.+|++++|+     ++.+++++|.++..+          +.+++|+..+++|++++|+   ++.+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~-----~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---~~~a   77 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEA   77 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc-----chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---hhHH
Confidence            344567799999999999999999     999999999999865          4558999999999999999   9999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHhchh
Q 046116          493 LWRRSQAYDMMGL-----------AKESLMDALTFIGSRM  521 (604)
Q Consensus       493 ~~rrG~a~~~LGd-----------~dEAL~d~~kALkl~~  521 (604)
                      |+++|.+|..+|+           |++|+..|++++++.|
T Consensus        78 ~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          78 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            9999999998875           6899999999999944

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=6.7e-10  Score=100.90  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116          409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS  488 (604)
Q Consensus       409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~  488 (604)
                      ..+..+..+.++|..+++.|+|++||..|++||+++|.     ++.+|.++|.+|..+|+|++|+.++++|++++|+   
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~---  143 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---  143 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-----hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence            34567888999999999999999999999999999999     9999999999999999999999999999999999   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHH
Q 046116          489 HSKSLWRRSQAYDMMGLAKESL  510 (604)
Q Consensus       489 n~KA~~rrG~a~~~LGd~dEAL  510 (604)
                      +..++..++.+...+....++.
T Consensus       144 n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         144 DKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=9.6e-10  Score=103.25  Aligned_cols=107  Identities=13%  Similarity=0.007  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-  488 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-  488 (604)
                      .+..+..+...|..+.+.|+|++|+..|+++++++|.     ++.++.++|.+|..+|++++|+..++++++++|+... 
T Consensus        67 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  141 (259)
T d1xnfa_          67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR  141 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-----hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH
Confidence            3345788999999999999999999999999999999     8999999999999999999999999999999886210 


Q ss_pred             ------------------------------------------------------------------CHHHHHHHHHHHHH
Q 046116          489 ------------------------------------------------------------------HSKSLWRRSQAYDM  502 (604)
Q Consensus       489 ------------------------------------------------------------------n~KA~~rrG~a~~~  502 (604)
                                                                                        ...+++.+|.+|..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~  221 (259)
T d1xnfa_         142 SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS  221 (259)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH
Confidence                                                                              12247788999999


Q ss_pred             cCCHHHHHHHHHHHHhchh
Q 046116          503 MGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       503 LGd~dEAL~d~~kALkl~~  521 (604)
                      +|++++|+..|++++..+|
T Consensus       222 ~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         222 LGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             TTCHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHcCC
Confidence            9999999999999998844

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=9.4e-10  Score=102.74  Aligned_cols=108  Identities=14%  Similarity=0.052  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------cccchHHHHHHHHHHHHHcCCcHHHH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-----------------MRKERIVLYSNRAQCYLMLKKPEAAI  473 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-----------------~~~~~a~l~~NRA~~ylkLgdy~eAI  473 (604)
                      ....+.+.+.|+.++..|++++|++.|++||++.|..                 .......++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3468899999999999999999999999999997652                 11235578999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          474 SDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      .+++++++++|.   +..+|..++.+|..+|++.+|+..|+++.+...
T Consensus        88 ~~~~~al~~~P~---~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          88 AELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999999   999999999999999999999999999977644

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-09  Score=94.07  Aligned_cols=83  Identities=16%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|+.+++.|+|++|+..|+++|+++|.     ++.+|.++|.+|..+|+|++|+.+++++++++|+   +
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~---~  104 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---N  104 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---C
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccc-----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence            3446789999999999999999999999999999999     9999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHH
Q 046116          490 SKSLWRRSQAY  500 (604)
Q Consensus       490 ~KA~~rrG~a~  500 (604)
                      ..++..++.+.
T Consensus       105 ~~~~~~l~~l~  115 (117)
T d1elwa_         105 PQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998888765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.99  E-value=4e-09  Score=95.99  Aligned_cols=89  Identities=15%  Similarity=0.033  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      .+..+.+.|..+++.|+|++|+..|+++|.++|.     +..+|+++|.+|..+|+|++|+.++.++++++|+   +..+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-----~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~---n~~~  134 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---NKAA  134 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence            4566778999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCCHHHH
Q 046116          493 LWRRSQAYDMMGLAKES  509 (604)
Q Consensus       493 ~~rrG~a~~~LGd~dEA  509 (604)
                      +..++.+...++.+.+.
T Consensus       135 ~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1         135 RLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHH
Confidence            99999998888777553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.6e-09  Score=94.09  Aligned_cols=95  Identities=14%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      .+..+..+...|..++..|++++|+..|.++|+++|.     ++.+|.++|.+|..+|+|++|+.+++++++++|+   +
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-----~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~---~  111 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---D  111 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---C
Confidence            3446889999999999999999999999999999999     8999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHH
Q 046116          490 SKSLWRRSQAYDM--MGLAKESLMD  512 (604)
Q Consensus       490 ~KA~~rrG~a~~~--LGd~dEAL~d  512 (604)
                      ..++..++.+...  .+.+++|+..
T Consensus       112 ~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         112 KDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9998888777543  3445556543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-08  Score=93.72  Aligned_cols=90  Identities=14%  Similarity=0.022  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+.+.|..+++.|+|++|+..|++||+++|.     ++.+++++|.||..+|+|++|+.++++|++++|+   +..+.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~---n~~~~  133 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAK  133 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhcccc-----chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHHHH
Confidence            445678999999999999999999999999999     8999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHH
Q 046116          494 WRRSQAYDMMGLAKESLM  511 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~  511 (604)
                      ..++.++..++...+...
T Consensus       134 ~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1         134 TQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999888877766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.88  E-value=4.5e-09  Score=94.49  Aligned_cols=83  Identities=11%  Similarity=-0.051  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      +..+.+.|..+++.|+|++|++.|++||+++|.     ++.+|+++|.+|..+|+|++|+.++.++++++|+   +..+.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-----~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---n~~~~  138 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIR  138 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccch-----hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            456778999999999999999999999999999     8999999999999999999999999999999999   99998


Q ss_pred             HHHHHHHHHcC
Q 046116          494 WRRSQAYDMMG  504 (604)
Q Consensus       494 ~rrG~a~~~LG  504 (604)
                      ..++.+...+.
T Consensus       139 ~~l~~~~~kl~  149 (153)
T d2fbna1         139 NSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.2e-09  Score=99.19  Aligned_cols=70  Identities=23%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd  485 (604)
                      +..+..+.+.|..+++.|+|++|+..|++||+++|+     ++.+|.++|.+|..+|+|++|+.++++|++++|+
T Consensus        35 p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-----~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            346789999999999999999999999999999999     8999999999999999999999999999999997

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.1e-07  Score=89.71  Aligned_cols=117  Identities=13%  Similarity=0.026  Sum_probs=98.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS  487 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~  487 (604)
                      .+..-.++....+|..++..|++++|+..|+++|+..|.........++.++|.+|..+|++++|+..+.+++++.|...
T Consensus         6 ~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            33444566777789999999999999999999999999854445577899999999999999999999999999865521


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          488 ---SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       488 ---~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                         ....+++.++.++...|++..|+..+.+++...+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~  125 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH  125 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence               1356789999999999999999999999999866543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=1.5e-08  Score=90.70  Aligned_cols=95  Identities=19%  Similarity=0.099  Sum_probs=79.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--------
Q 046116          407 MKENELSVFMLKQQGNQEFW----------AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--------  468 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk----------~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--------  468 (604)
                      ++..|..+..+...|..++.          .+.+++|+..|++||+++|+     ++.+|+|+|.+|..+|+        
T Consensus        24 l~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-----~~~a~~~lG~~y~~~g~~~~~~~~~   98 (145)
T d1zu2a1          24 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----KDEAVWCIGNAYTSFAFLTPDETEA   98 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-----hhHHHhhHHHHHHHcccchhhHHHH
Confidence            34445578888999988874          45568999999999999999     99999999999998764        


Q ss_pred             ---cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116          469 ---PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKES  509 (604)
Q Consensus       469 ---y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEA  509 (604)
                         |.+|+..+++|++++|+   +..++..++.+....+.+.++
T Consensus        99 ~~~~~~A~~~~~kal~l~P~---~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          99 KHNFDLATQFFQQAVDEQPD---NTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHhHHHhhhhhhcccccCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence               79999999999999999   988888788776555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=87.90  Aligned_cols=91  Identities=12%  Similarity=-0.076  Sum_probs=76.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116          407 MKENELSVFMLKQQGNQEFWAG---YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS  483 (604)
Q Consensus       407 lee~~~~A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd  483 (604)
                      +...+..+..+.+.|..+++.+   ++++||..|++++..+|.   ...+.+++|+|.+|.++|+|++|+..++++|+++
T Consensus        26 L~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~---~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          26 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC---chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            3444456789999999998754   567899999999999876   1135689999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHc
Q 046116          484 KTMSSHSKSLWRRSQAYDMM  503 (604)
Q Consensus       484 Pd~~~n~KA~~rrG~a~~~L  503 (604)
                      |+   +.+|...++.+...+
T Consensus       103 P~---~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         103 PQ---NNQAKELERLIDKAM  119 (122)
T ss_dssp             TT---CHHHHHHHHHHHHHH
T ss_pred             cC---CHHHHHHHHHHHHHH
Confidence            99   999998888776554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.8e-08  Score=83.66  Aligned_cols=70  Identities=11%  Similarity=-0.013  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK  524 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~  524 (604)
                      .+..+-+.|.+|+..|+|++|+..++++|+++|+   +..+++++|.+|..+|+|++|+.+|+++++++++..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            3567788999999999999999999999999999   999999999999999999999999999999976543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=8.6e-08  Score=93.51  Aligned_cols=112  Identities=9%  Similarity=-0.063  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---  487 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---  487 (604)
                      ..++.+.+.|+.+...|+|++|++.|.+|+++.+. ......+..|.+.|.||.++|++++|+..+++++++.+...   
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            34677888999999999999999999999998432 11223578999999999999999999999999999876611   


Q ss_pred             CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhchhhc
Q 046116          488 SHSKSLWRRSQAYDM-MGLAKESLMDALTFIGSRMKC  523 (604)
Q Consensus       488 ~n~KA~~rrG~a~~~-LGd~dEAL~d~~kALkl~~~~  523 (604)
                      ....++.++|.++.. +|++++|+..|++++++.+..
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            126788899998866 699999999999999886543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.6e-06  Score=84.35  Aligned_cols=111  Identities=7%  Similarity=-0.159  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-
Q 046116          412 LSVFMLKQQGNQEFW-AGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-  488 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk-~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-  488 (604)
                      ..+..+...|..++. .|+|++|++.|.+|+++.+. ........++.++|.+|..+|+|++|+..+.+++.+.|.... 
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            356778888988876 49999999999999998543 112335778999999999999999999999999999887311 


Q ss_pred             --C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          489 --H-SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       489 --n-~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        . ...++..+.++...|+++.|...+.++++.++.
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence              1 245678899999999999999999999999654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.6e-08  Score=104.53  Aligned_cols=119  Identities=10%  Similarity=-0.101  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      +..+..+.+.|..+.+.|++++|+..|.+++..+|.       .++.++|.++...++|++|+..|++|++++|+   +.
T Consensus       117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---~~  186 (497)
T d1ya0a1         117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS---NG  186 (497)
T ss_dssp             --------------------------CCHHHHHHHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BS
T ss_pred             hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---ch
Confidence            345667788888888888888888888888887764       56778888888888888888888888888888   88


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116          491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN  544 (604)
Q Consensus       491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~  544 (604)
                      .+|+++|.++...|++.+|+..|.+|+..     +++......-+.+++.+..+
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-----~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAV-----KFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSS-----SBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHHhhh
Confidence            88888888888888888888888888887     33344445555555555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.6e-07  Score=86.91  Aligned_cols=107  Identities=12%  Similarity=-0.106  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCC
Q 046116          412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SKT  485 (604)
Q Consensus       412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dPd  485 (604)
                      ..+..+...|..+...|++++|+..|.+++...|. ........+.++|.+|+.+|++++|+..+++++.+      .|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            34667788899999999999999999999999876 34456778899999999999999999999999854      455


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                         ...+++.+|.+|..+|++++|+..+++++++...
T Consensus       290 ---~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         290 ---LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence               7889999999999999999999999999998543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.49  E-value=3.2e-07  Score=77.92  Aligned_cols=81  Identities=6%  Similarity=-0.143  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHH
Q 046116          453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIP  532 (604)
Q Consensus       453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~  532 (604)
                      ...++++|.++++.|++++|+..++++++++|+   ++.+|+.+|.++..+|++++|+..|++++++.     |.+....
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~   87 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAVH   87 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccccc-----cccccch
Confidence            345678999999999999999999999999999   99999999999999999999999999999994     4444444


Q ss_pred             HHHHHHHHH
Q 046116          533 YYAAVMINK  541 (604)
Q Consensus       533 ~~l~rlikK  541 (604)
                      ..+......
T Consensus        88 ~~la~~y~~   96 (112)
T d1hxia_          88 AALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=4.1e-07  Score=89.40  Aligned_cols=97  Identities=11%  Similarity=-0.123  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc---------------------------
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP---------------------------  469 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy---------------------------  469 (604)
                      ....|..+...+++++|+..|+++|+++|.     +..+|.++|.++..+|++                           
T Consensus       147 ~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-----~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  221 (334)
T d1dcea1         147 DYRRFVAAQAAVAPAEELAFTDSLITRNFS-----NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (334)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-----CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhccccHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHh
Confidence            345677777888888888888888888888     788888888877776654                           


Q ss_pred             -------------------------------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 046116          470 -------------------------------------EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMD  512 (604)
Q Consensus       470 -------------------------------------~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d  512 (604)
                                                           .+|+..+.+++..+|+   +..+++.+|.++..+|++++|+..
T Consensus       222 ~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~eA~~~  298 (334)
T d1dcea1         222 DPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW---CLLTIILLMRALDPLLYEKETLQY  298 (334)
T ss_dssp             CSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch---HHHHHHHHHHHHHHCCCHHHHHHH
Confidence                                                 3444555555556666   778899999999999999999999


Q ss_pred             HHHHHhchh
Q 046116          513 ALTFIGSRM  521 (604)
Q Consensus       513 ~~kALkl~~  521 (604)
                      |+++++++|
T Consensus       299 ~~~ai~ldP  307 (334)
T d1dcea1         299 FSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHCG
T ss_pred             HHHHHHHCc
Confidence            999999955

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.8e-07  Score=74.92  Aligned_cols=71  Identities=10%  Similarity=-0.171  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM----SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~----~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+.-.+++|.++++.|+|.+|+..+++|+++.|..    .....+++.+|.++..+|++++|+..|+++|++.|+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            45567799999999999999999999999997662    113788999999999999999999999999999543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=1.5e-06  Score=85.29  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCCCCCCHHHH-
Q 046116          417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--PEAAISDTTRALSLSKTMSSHSKSL-  493 (604)
Q Consensus       417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--y~eAI~D~~rALeLdPd~~~n~KA~-  493 (604)
                      +...++.....|++++|+..|+++++.+|.     +..++.+++.++..+++  +++|+..+.++++++|.   +..++ 
T Consensus        76 l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~  147 (334)
T d1dcea1          76 LETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWD  147 (334)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHhCCC-----cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch---hhhhhh
Confidence            344444555666688888888888888888     78888888888877765  77888888888888888   77775 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSR  520 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~  520 (604)
                      +.+|.++...|++++|+..++++++..
T Consensus       148 ~~~~~~~~~~~~~~~Al~~~~~~i~~~  174 (334)
T d1dcea1         148 YRRFVAAQAAVAPAEELAFTDSLITRN  174 (334)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHcC
Confidence            466788888888888888888888883

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.27  E-value=7.8e-07  Score=79.30  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116          411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK  484 (604)
Q Consensus       411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP  484 (604)
                      ...+..+.+.|..+++.|+|++|+..|+++|.+.|.      +..+....+|+|+|.+|..+|++++|+.++++|+++.|
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            345778999999999999999999999999998653      11223566899999999999999999999999999977


Q ss_pred             C
Q 046116          485 T  485 (604)
Q Consensus       485 d  485 (604)
                      .
T Consensus       132 ~  132 (156)
T d2hr2a1         132 E  132 (156)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.22  E-value=8.4e-07  Score=87.36  Aligned_cols=85  Identities=13%  Similarity=0.033  Sum_probs=76.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116          420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQA  499 (604)
Q Consensus       420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a  499 (604)
                      ++..+++.|++++|+..|.++|+.+|.     ++.++.+++.+|...|++++|+..++++++++|+   +..++..++.+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~-----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~---~~~~~~~l~~l   73 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPK-----DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHL   73 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHH
Confidence            356788999999999999999999999     9999999999999999999999999999999999   99999999988


Q ss_pred             HHHcCCHHHHHHH
Q 046116          500 YDMMGLAKESLMD  512 (604)
Q Consensus       500 ~~~LGd~dEAL~d  512 (604)
                      +...+..+++...
T Consensus        74 l~a~~~~~~a~~~   86 (264)
T d1zbpa1          74 VKAAQARKDFAQG   86 (264)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHhccccHHHHHH
Confidence            8877766655443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7.9e-06  Score=86.07  Aligned_cols=85  Identities=14%  Similarity=0.023  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS  492 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA  492 (604)
                      ....+...|..+...|+|++|+..|.+|++++|+     +...|+++|.+|...|++.+|+.+|.+||.++|+   ++.|
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~---~~~a  222 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP---FPAA  222 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC---CHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHH
Confidence            3467888999999999999999999999999999     8999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHcCC
Q 046116          493 LWRRSQAYDMMGL  505 (604)
Q Consensus       493 ~~rrG~a~~~LGd  505 (604)
                      +.+++.++....+
T Consensus       223 ~~nL~~~~~~~~~  235 (497)
T d1ya0a1         223 STNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999877653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.53  E-value=2e-05  Score=77.31  Aligned_cols=107  Identities=11%  Similarity=-0.060  Sum_probs=91.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-CCCC
Q 046116          408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-SKTM  486 (604)
Q Consensus       408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-dPd~  486 (604)
                      +..+..+......|..+...|++++|+..|+++++++|+     ....+.+++..+...+...++.....+...+ +|+ 
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-----~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~-   97 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-----YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE-   97 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCH-
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHhccccHHHHHHhhhhhcccCch-
Confidence            345557889999999999999999999999999999999     8999999999988888877777665554333 455 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                        ...+++.++.++...|++++|...+.++.+..|.
T Consensus        98 --~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          98 --ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             --HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence              7788899999999999999999999999999554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00024  Score=65.16  Aligned_cols=68  Identities=15%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhcCCC
Q 046116          413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA-------LSLSKT  485 (604)
Q Consensus       413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA-------LeLdPd  485 (604)
                      ....+...+..+...|+|++|+..++++++++|.     +..+|.+++.+|..+|++.+|+..|+++       +.++|.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-----~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-----REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            4677889999999999999999999999999999     9999999999999999999999999998       556776

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00043  Score=67.01  Aligned_cols=99  Identities=12%  Similarity=-0.049  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYL-MLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~yl-kLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ..+...++...+.|+++.|.+.|.+|++..|.     ....|.+.|.... ..|+.+.|...++++++.+|+   +...+
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-----~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~---~~~~w  206 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYV  206 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh---hHHHH
Confidence            35678888888999999999999999999998     7788888887644 468999999999999999999   99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116          494 WRRSQAYDMMGLAKESLMDALTFIGSRM  521 (604)
Q Consensus       494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~  521 (604)
                      ...+..+...|+++.|...|+++++.++
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999854

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.0011  Score=58.23  Aligned_cols=81  Identities=9%  Similarity=-0.138  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116          414 VFMLKQQGNQEFWAG---YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS  490 (604)
Q Consensus       414 A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~  490 (604)
                      ++...+-|-.+.+..   +.++||..+.+++..+|..    ...+++++|.+|.++|+|++|...++++|+++|+   |.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~----~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~---n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC---cH
Confidence            455666777777554   4579999999999998861    3589999999999999999999999999999999   98


Q ss_pred             HHHHHHHHHHH
Q 046116          491 KSLWRRSQAYD  501 (604)
Q Consensus       491 KA~~rrG~a~~  501 (604)
                      .|..-+..+..
T Consensus       108 qA~~L~~~Ie~  118 (124)
T d2pqrb1         108 QVGALKSMVED  118 (124)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88765554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.20  E-value=0.0025  Score=59.26  Aligned_cols=94  Identities=19%  Similarity=0.025  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCC
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTMSSH  489 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~~~n  489 (604)
                      ++.+.+.|..++.+|||++|++.|.+|.+..       ++.++.++|.+|..    ..++..|+..+..+....     +
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~   69 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----Y   69 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----c
Confidence            5688899999999999999999999998763       57889999999998    679999999999988754     6


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          490 SKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       490 ~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                      +.+.+.+|..+..    ..+.+.|+..++.+.+.
T Consensus        70 ~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          70 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  103 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            6888999988876    46889999999998876

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.0016  Score=62.81  Aligned_cols=102  Identities=7%  Similarity=-0.099  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116          414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL  493 (604)
Q Consensus       414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~  493 (604)
                      ...+...+......|++++|...|.++|+..|..    ...+|...+......|+++.|.+.+.++++..|.   ....+
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~----~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~---~~~~~  171 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHHVY  171 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC---CTHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHH
Confidence            3456777888889999999999999999999872    3557888999999999999999999999999999   88889


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHhchhh
Q 046116          494 WRRSQAYDM-MGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       494 ~rrG~a~~~-LGd~dEAL~d~~kALkl~~~  522 (604)
                      ...|..... .|+.+.|...|+.+++.+|.
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            888887544 68999999999999998654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0015  Score=57.28  Aligned_cols=68  Identities=10%  Similarity=-0.030  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116          452 RIVLYSNRAQCYLMLK---KPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK  522 (604)
Q Consensus       452 ~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~  522 (604)
                      .+...++.|.|+.+..   +.++||..++.+++.+|.   + ..++|.+|.+|+.+|+|++|+..++++|+..|+
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~---~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3678888899988765   456899999999999987   5 589999999999999999999999999999443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.40  E-value=0.017  Score=49.03  Aligned_cols=82  Identities=12%  Similarity=-0.104  Sum_probs=71.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 046116          426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYD  501 (604)
Q Consensus       426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~  501 (604)
                      ...++++|+..|.+|.+..       ++...+++|..|..    ..++.+|+..++++.+.  .   ++.|.+++|.+|.
T Consensus        35 ~~~~~~~a~~~~~~aa~~g-------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g---~~~a~~~Lg~~y~  102 (133)
T d1klxa_          35 SQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---DQDGCLILGYKQY  102 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhhhccc-------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--C---cchHHHHHHHHHH
Confidence            3468999999999998864       57888999999987    56899999999999886  4   6799999999998


Q ss_pred             H----cCCHHHHHHHHHHHHhc
Q 046116          502 M----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       502 ~----LGd~dEAL~d~~kALkl  519 (604)
                      .    ..++.+|+..|++|.+.
T Consensus       103 ~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         103 AGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cCCccCCCHHHHHHHHHHHHHC
Confidence            7    56899999999999887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.98  E-value=0.026  Score=52.02  Aligned_cols=94  Identities=15%  Similarity=-0.005  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCC
Q 046116          414 VFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKT  485 (604)
Q Consensus       414 A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd  485 (604)
                      ...+...|..++.    ..+...+...+..+.+.  .     ++.+.+++|.+|..    ..++++|+..++++.+.  +
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g-----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g  212 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--K-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E  212 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhccccc--c-----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--c
Confidence            3455667777775    45778888888888864  3     57899999999998    77999999999999987  4


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116          486 MSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS  519 (604)
Q Consensus       486 ~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl  519 (604)
                         ++.|++++|.+|..    ..++++|+..|++|.+.
T Consensus       213 ---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         213 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence               67999999999986    44899999999999988

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.51  E-value=0.069  Score=45.05  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----c
Q 046116          428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM----M  503 (604)
Q Consensus       428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~----L  503 (604)
                      .|+++|+..|.+|.+..-.       ....+++  .....++++|+..++++.+.  +   ++.+.+.+|..|..    .
T Consensus         7 kd~~~A~~~~~kaa~~g~~-------~a~~~l~--~~~~~~~~~a~~~~~~aa~~--g---~~~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM-------FGCLSLV--SNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-------THHHHHH--TCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHHCCCh-------hhhhhhc--cccccCHHHHHHHHhhhhcc--c---chhhhhhHHHhhhhccccc
Confidence            3789999999999988533       3344444  34567899999999999875  5   78999999999986    5


Q ss_pred             CCHHHHHHHHHHHHhc
Q 046116          504 GLAKESLMDALTFIGS  519 (604)
Q Consensus       504 Gd~dEAL~d~~kALkl  519 (604)
                      .++++|+..|+++.+.
T Consensus        73 ~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          73 KDLRKAAQYYSKACGL   88 (133)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhhhhcc
Confidence            6799999999999887

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.23  Score=49.96  Aligned_cols=109  Identities=12%  Similarity=0.056  Sum_probs=72.7

Q ss_pred             hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhc---cchHHHHHHHHhcC
Q 046116           63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYT---MNKAHFAEKAVKSG  138 (604)
Q Consensus        63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~---~~~~~~~~~av~~~  138 (604)
                      .++..|||++...|+. ..+-+-|.++.+..++.+.-.+..         +---|+-+++.-+   .+.+.....-...|
T Consensus       285 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~---------~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~  355 (529)
T d1jdha_         285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED---------ITEPAICALRHLTSRHQEAEMAQNAVRLHY  355 (529)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchh---------HHHHHHHHhhcccchhhcchhhhhhHHhcc
Confidence            3677888887654433 233456777777766655433221         1112444444333   33344444445889


Q ss_pred             CcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhH
Q 046116          139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYE  180 (604)
Q Consensus       139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~  180 (604)
                      .+|+|+.+|.-.-.|..+..++.+|++|+.+...-..+.+++
T Consensus       356 ~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g  397 (529)
T d1jdha_         356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG  397 (529)
T ss_dssp             CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred             cchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcc
Confidence            999999999999999999999999999999988877777654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.15  Score=51.34  Aligned_cols=119  Identities=14%  Similarity=0.153  Sum_probs=81.9

Q ss_pred             hhhHHHHHHhhhCCCCCCCCCccch--hhhhHHHHhhhcCCCCCCCc-cccHHHHHHHHHHhhcCCchhhccCCcccchh
Q 046116           38 LRRAKVAQCFKELPLSRLRDDQEHV--LVLSGLFNIAIKQPDDPEFP-SLGIFECMTKLIHKGITDKEWLLRDQNIYIPY  114 (604)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~-~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~y  114 (604)
                      .++..|....+-|-     |++..|  -++..|+++|-..++...+. +-|+.+++.+++.+          ..++-+-.
T Consensus        14 ~~~~aip~L~~lL~-----~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~----------~~~~~~~~   78 (529)
T d1jdha_          14 LATRAIPELTKLLN-----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----------TNDVETAR   78 (529)
T ss_dssp             ---CHHHHHHHHHT-----CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH----------CCCHHHHH
T ss_pred             HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcC----------CCCHHHHH
Confidence            33444666555543     344444  47788888876544333332 34677777777644          23455677


Q ss_pred             hhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116          115 YAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF  173 (604)
Q Consensus       115 y~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  173 (604)
                      .|+-+++..+ ..++....-++.|+||+|+.+|+..-+. -|+.|++||++|+.+....
T Consensus        79 ~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~-v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          79 CTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHH-HHHHHHHHHHHhhcccchh
Confidence            8888888877 5667788889999999999999988776 4788999999999876643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.16  Score=47.85  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch-HHHH
Q 046116          105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF-EAVA  177 (604)
Q Consensus       105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f-~~~~  177 (604)
                      ++..|--+=-+||..||.-....++.-+.-++.|.||+|+++|+-.-. -=|+.|++||++|+..+... ..|.
T Consensus        11 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1          11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445566666789999999988888888888999999999999985433 34889999999998655443 3444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=0.23  Score=46.10  Aligned_cols=67  Identities=22%  Similarity=0.261  Sum_probs=56.0

Q ss_pred             ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      +++.+.-|=.+|+.+||.-.-+.+..-...++.|+||+|+.+|.-.-.-.-++-|+.||+.++++..
T Consensus        68 l~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~  134 (264)
T d1xqra1          68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE  134 (264)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch
Confidence            3445666778899999999998888888889999999999999755566678889999999987654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.29  E-value=0.14  Score=47.77  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             hhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116           64 VLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP  142 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  142 (604)
                      ++..|++++-..|+.. .|..-|.+.-+..++           +..+.-+-.+++-+|+.......+.....+++|+||+
T Consensus       122 a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-----------QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-----------HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             HHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-----------hcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence            5556666655444322 345555555555554           3445557788999999888777888888999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          143 LMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       143 l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      |++||.-.=.=| |+.|++||+.|++..
T Consensus       191 L~~lL~~~~~~~-~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         191 LVALVRTEHSPF-HEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHTSCCSTH-HHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCHHH-HHHHHHHHHHHHhcC
Confidence            999998654434 889999999998754

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.57  E-value=1.1  Score=44.48  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             hhhHHHHhhhcCCCCCCCcc-ccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116           64 VLSGLFNIAIKQPDDPEFPS-LGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP  142 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~~~~~~-lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  142 (604)
                      ++..|+|++...++.|+|.. -|++.....++.           ..+.-+=.+++..|+..+-+..+.....+++|++|.
T Consensus       224 ~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~-----------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  292 (503)
T d1wa5b_         224 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR  292 (503)
T ss_dssp             HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhh
Confidence            66778888876666666543 366666555542           334445677888888888888888888999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          143 LMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       143 l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      |+++++..- +--+.-|+++||.++++..
T Consensus       293 l~~ll~~~~-~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         293 LVELLSHES-TLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHGGGCSC-HHHHHHHHHHHHHHTTSCH
T ss_pred             hhhcccCCc-hhhhhhHHHHHHHHHHHHH
Confidence            999998764 4445678999999998753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.85  E-value=0.66  Score=44.55  Aligned_cols=96  Identities=13%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             hhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116           64 VLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP  142 (604)
Q Consensus        64 ~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~  142 (604)
                      ++++|.+++...++. +-+..-|+++....|+.           +.|.-+-..|..+|+.++.+..++....++.|++++
T Consensus       208 a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-----------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~  276 (434)
T d1q1sc_         208 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-----------ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV  276 (434)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred             HHhhhcccchhhhhhHHHHhhcccchhcccccc-----------cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccch
Confidence            555565655432211 12233466666655543           345667788999999999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116          143 LMELLRGKISWVEERVAVRALGHLASHDK  171 (604)
Q Consensus       143 l~~~~~~~~~wve~r~~~r~l~h~a~~~~  171 (604)
                      |+++|+-.-.= -++.|+.+|++|+.+..
T Consensus       277 l~~ll~~~~~~-v~~~a~~~L~~l~~~~~  304 (434)
T d1q1sc_         277 FPSLLTNPKTN-IQKEATWTMSNITAGRQ  304 (434)
T ss_dssp             HHHHTTCSSHH-HHHHHHHHHHHHTTSCH
T ss_pred             HHHhhcccchh-hhHHHHHHHhhhccccc
Confidence            99999865442 37889999999986543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.69  E-value=0.69  Score=44.38  Aligned_cols=119  Identities=14%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             HHHHHHhhhCCCCCCCCCccchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhh
Q 046116           41 AKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAH  118 (604)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah  118 (604)
                      ..|-...+-|-.   .|...+.-++..|=+..-..++.|  ++..-|++.=+.+++.          +.++.-|=+.|+-
T Consensus        13 ~~i~~lv~~l~s---~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~----------~~~~~~v~~~a~~   79 (434)
T d1q1sc_          13 WSVEDIVKGINS---NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG----------KTDCSPIQFESAW   79 (434)
T ss_dssp             CCHHHHHHHHTS---SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT----------CGGGHHHHHHHHH
T ss_pred             hhHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc----------cCCCHHHHHHHHH
Confidence            345566666555   444455567777777754333322  3455566555555442          3344556678999


Q ss_pred             hhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116          119 IIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF  173 (604)
Q Consensus       119 ~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f  173 (604)
                      +++...-...+....-++.|+||+|+++|... .---++.|++||+.+++...++
T Consensus        80 ~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          80 ALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCChhhhhHhhhccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHH
Confidence            99998877788888889999999999999875 3455788999999999765544

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.22  E-value=0.61  Score=46.48  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116          106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHD  170 (604)
Q Consensus       106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~  170 (604)
                      ...+.-+...|+.+||..+.+..+.....+..|++|.|..+|.-.=+. -++.|+.+|++++...
T Consensus       298 ~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~-i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN-IKKEACWTISNITAGN  361 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSC
T ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHH-HHHHHHHHHHHHhhcc
Confidence            345677888999999999999999999999999999999999876444 4678999999998654