Citrus Sinensis ID: 046124

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
RQDVDAEKRHEQLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHccccEEccccccEcEEEEEEcccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccccEccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHc
Coil and Loop (DISEMBL)
RQDVDAEKRHEQLNLFLLGNynvnlssnaslnatfyiyqpentVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVaerapesvaderpieptvVGLQLQLEHVWRCLEGESVGIVGlygmggvgkTTLLTHINnkflesptnfNYVIWVVMSKDSRLENIQETIGE
Flexible Loop (DISEMBL)
rqdvdaekRHEQLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELgklieakndvvarvvnaerqqtmtrlnkvqgwlsrFGKKVAKKLRDAGTLMANGAFEVVAERApesvaderpiePTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLEniqetige
Low Complexity Region (SEG)
RQDVDAEKRHEQLNLFLLGNYNVnlssnaslnaTFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESvgivglygmggvgKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Disordered region (IsUnstruct)
************LNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAE**********PIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMS**************
Disordered Region (DISOPRED)
***********QLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAG********************************QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Disordered Region (DISEMBL)
********RHEQLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Disordered Region (DISPRO)
****DAEKRHEQLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RQDVDAEKRHEQLNLFLLGNYNVNLSSNASLNATFYIYQPENTVRICRNILQISIDGAIFNRCLDCFLGKAASxxxxxxxxxxxxxxxxxxxxxKNDVVARVVNAERQQTMTRLNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q8L3R3	885	Disease resistance protei	yes	no	0.705	0.189	0.375	1e-29
O82484	892	Putative disease resistan	no	no	0.773	0.206	0.351	2e-29
Q9LMP6	851	Probable disease resistan	no	no	0.768	0.215	0.376	7e-29
O64973	889	Disease resistance protei	no	no	0.710	0.190	0.359	1e-28
O64789	925	Probable disease resistan	no	no	0.777	0.2	0.351	3e-28
P60839	884	Probable disease resistan	no	no	0.781	0.210	0.337	1e-27
P60838	894	Probable disease resistan	no	no	0.693	0.184	0.376	3e-27
Q9C8T9	898	Putative disease resistan	no	no	0.701	0.185	0.364	8e-27
Q8RXS5	888	Probable disease resistan	no	no	0.777	0.208	0.333	1e-26
O22727	967	Probable disease resistan	no	no	0.785	0.193	0.342	2e-26

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 109/205 (53%), Gaps = 37/205 (18%)

Query: 71  AASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSR------- 123
            + I+NL +N+ +L+  +G L   ++DV  R+   E      RL +VQ WL+R       
Sbjct: 26  GSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRRLAQVQVWLTRIQTIENQ 85

Query: 124 ------------------------------FGKKVAKKLRDAGTLMANGAFEVVAERAPE 153
                                         +GK+V   LR+   L + G F++V E AP 
Sbjct: 86  FNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLSSQGVFDIVTEAAPI 145

Query: 154 SVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213
           +  +E PI+ T+VG    L+ VW CL  + V IVGLYGMGGVGKTTLLT INNKF +   
Sbjct: 146 AEVEELPIQSTIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFSKLGG 205

Query: 214 NFNYVIWVVMSKDSRLENIQETIGE 238
            F+ VIWVV+SK++ +  IQ++IGE
Sbjct: 206 GFDVVIWVVVSKNATVHKIQKSIGE 230

Disease resistance (R) protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 41/225 (18%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
           LQIS D  +  R   CF      I  L+ N+VALE  +  L   ++DV+ RV   E  + 
Sbjct: 7   LQISCD-QVLTRAYSCFFSLGNYIHKLKDNIVALEKAIEDLTATRDDVLRRV-QMEEGKG 64

Query: 111 MTRLNKVQGWLSR-------------------------------------FGKKVAKKLR 133
           + RL +VQ WL R                                     +G++V   ++
Sbjct: 65  LERLQQVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTYGQRVFLMIK 124

Query: 134 DAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMG 193
           +   L +NG FE+VA  AP+   + RPI+PT++G +   +  W  L  + VG +GLYGMG
Sbjct: 125 EVENLNSNGFFEIVAAPAPK--LEMRPIQPTIMGRETIFQRAWNRLMDDGVGTMGLYGMG 182

Query: 194 GVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GVGKTTLLT I+N   ++    + VIWVV+S D ++  IQE IGE
Sbjct: 183 GVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGE 227

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 114/223 (51%), Gaps = 40/223 (17%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
           L+IS D  + + C  C  G    I  ++ N+ AL+  + +L E ++D++ RVV  E  + 
Sbjct: 7   LEISCDQTLNHAC-GCLFGDRNYILKMEANLEALQNTMQELEERRDDLLRRVV-IEEDKG 64

Query: 111 MTRLNKVQGWLSR-------------------------------------FGKKVAKKLR 133
           + RL +VQGWLSR                                     +G  V KKL+
Sbjct: 65  LQRLAQVQGWLSRVKDVCSQVNDLLKAKSIQTERLCLCGYCSKNFISGRNYGINVLKKLK 124

Query: 134 DAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMG 193
               L+A G FEVVAE+ P    +++ I+ T VGL   +   W  L  +    +GLYGMG
Sbjct: 125 HVEGLLAKGVFEVVAEKIPAPKVEKKHIQ-TTVGLDAMVGRAWNSLMKDERRTLGLYGMG 183

Query: 194 GVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236
           GVGKTTLL  INNKFLE    F+ VIWVV+SKD + E IQE I
Sbjct: 184 GVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQI 226

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 37/206 (17%)

Query: 70  KAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLS------- 122
           + + I NL KN+ +L+  +  L   + DV+ R+   E      RL++VQ WL+       
Sbjct: 25  RGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRLSQVQVWLTSVLIIQN 84

Query: 123 ------------------------------RFGKKVAKKLRDAGTLMANGAFEVVAERAP 152
                                         R+GK+V   L++  +L + G F+VV+E  P
Sbjct: 85  QFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEVESLSSQGFFDVVSEATP 144

Query: 153 ESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP 212
            +  DE P +PT+VG ++ LE  W  L  +  GI+GLYGMGGVGKTTLLT INNKF +  
Sbjct: 145 FADVDEIPFQPTIVGQEIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKID 204

Query: 213 TNFNYVIWVVMSKDSRLENIQETIGE 238
             F+ VIWVV+S+ S +  IQ  I E
Sbjct: 205 DRFDVVIWVVVSRSSTVRKIQRDIAE 230

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 40/225 (17%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
            QI++     NR  DC +GK+  IR L+KN+ AL+ E+  L   +++V  +V   E +  
Sbjct: 7   FQIAVGDQTMNRIFDCLIGKSY-IRTLEKNLRALQREMEDLRATQHEVQNKVAREESRHQ 65

Query: 111 MTRLNKVQGWLSR-------------------------------------FGKKVAKKLR 133
             RL  VQ WL R                                     +GKKV   L 
Sbjct: 66  Q-RLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCTKYVCSSYKYGKKVFLLLE 124

Query: 134 DAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMG 193
           +   L + G F+ V++  P S  +ERP +PT+ G +  LE  W  L  + VGI+GL+GMG
Sbjct: 125 EVKILKSEGNFDEVSQPPPRSEVEERPTQPTI-GQEEMLEKAWNRLMEDGVGIMGLHGMG 183

Query: 194 GVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GVGKTTL   I+NKF E    F+ VIW+V+S+ ++L  +QE I E
Sbjct: 184 GVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSQGAKLSKLQEDIAE 228

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 39/225 (17%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
           +Q+S D  + N    CF  K   I+N+++N+ +LE  +  L   ++D++ +V  AE +  
Sbjct: 7   VQVSCD-QLLNHLGRCFCRKLYYIQNIKENLTSLEEAMEDLKALRDDLLRKVQTAE-EGG 64

Query: 111 MTRLNKVQGWLSR-------------------------------------FGKKVAKKLR 133
           + RL++++ WL R                                     +G++V   L 
Sbjct: 65  LQRLHQIKVWLKRVKTIESQFNDLDSSRTVELQRLCCCGVGSRNLRLSYDYGRRVFLMLN 124

Query: 134 DAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMG 193
               L + G FE VA  A  +V +ERP++PT+VG +  LE  W  L  +   I+GLYGMG
Sbjct: 125 IVEDLKSKGIFEEVAHPATRAVGEERPLQPTIVGQETILEKAWDHLMDDGTKIMGLYGMG 184

Query: 194 GVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GVGKTTLLT INN+F ++      VIWVV+S D ++  IQ+ IGE
Sbjct: 185 GVGKTTLLTQINNRFCDTDDGVEIVIWVVVSGDLQIHKIQKEIGE 229

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 37/202 (18%)

Query: 74  IRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSR---------- 123
           I  L KNVVA++ ++  L + ++DV  RV   E  +   RL++VQGWL+           
Sbjct: 29  ICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVENKFNE 88

Query: 124 ---------------------------FGKKVAKKLRDAGTLMANGAFEVVAERAPESVA 156
                                      +GK+V   L++  +L + G F+ V    P +  
Sbjct: 89  LLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESLSSQGDFDTVTLATPIARI 148

Query: 157 DERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFN 216
           +E PI+PT+VG +  LE VW  L  +   IVGLYGMGGVGKTTLLT INNKF E  + F 
Sbjct: 149 EEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFG 208

Query: 217 YVIWVVMSKDSRLENIQETIGE 238
            VIWVV+SK   +  IQ  IG+
Sbjct: 209 VVIWVVVSKSPDIHRIQGDIGK 230

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 39/206 (18%)

Query: 70  KAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSR------ 123
           K +   NL+KN+VALET + +L +AK D + R +  E  + +  L +++ WL+R      
Sbjct: 23  KVSYTHNLEKNLVALETTMEEL-KAKRDDLLRKLKREEDRGLQTLGEIKVWLNRVETIES 81

Query: 124 -------------------------------FGKKVAKKLRDAGTLMANGAFEVVAERAP 152
                                          +GK V  KLR+   L     FEV++++A 
Sbjct: 82  RVNDLLNARNAELQRLCLCGFCSKSLTTSYRYGKSVFLKLREVEKL-ERRVFEVISDQAS 140

Query: 153 ESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP 212
            S  +E+ ++PT+VG +  L++ W  L  + VGI+GLYGMGGVGKTTLLT INNKF +  
Sbjct: 141 TSEVEEQQLQPTIVGQETMLDNAWNHLMEDGVGIMGLYGMGGVGKTTLLTQINNKFSKYM 200

Query: 213 TNFNYVIWVVMSKDSRLENIQETIGE 238
             F+ VIWVV+SK+  +ENI + I +
Sbjct: 201 CGFDSVIWVVVSKEVNVENILDEIAQ 226

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 40/225 (17%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
           + IS D    N C  C       I  L++N+ AL+  L ++ + + D++ ++++ ER+  
Sbjct: 7   VSISCDQLTKNVC-SCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERR-G 64

Query: 111 MTRLNKVQGWLS-------------------------------------RFGKKVAKKLR 133
           + RL+ VQGW+S                                     R+GK+V K + 
Sbjct: 65  LQRLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIE 124

Query: 134 DAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMG 193
           +   L   G F VVAER   +  +ERP  P +V +   LE  W  L  + +GI+GL+GMG
Sbjct: 125 EVEVLRYQGDFAVVAERVDAARVEERPTRP-MVAMDPMLESAWNRLMEDEIGILGLHGMG 183

Query: 194 GVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GVGKTTLL+HINN+F      F+ VIW+V+SK+ +++ IQ+ I E
Sbjct: 184 GVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWE 228

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 41/228 (17%)

Query: 49  NILQISIDG-AIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAER 107
           N + I I G  + +R + C  GK   IRNL+KN+ AL+ E+  L   +++V  +V   E 
Sbjct: 3   NFVCIEISGDQMLDRIIRCLCGKGY-IRNLEKNLRALQREMEDLRATQHEVQNKVAREES 61

Query: 108 QQTMTRLNKVQGWLSR-------------------------------------FGKKVAK 130
           +    RL  VQ WL R                                     +GK+V  
Sbjct: 62  RHQ-QRLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFL 120

Query: 131 KLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLY 190
            L +   L + G F+ V++  P S  +ERP +PT+ G +  L+  W  L  + VGI+GL+
Sbjct: 121 LLEEVTKLKSEGNFDEVSQPPPRSEVEERPTQPTI-GQEEMLKKAWNRLMEDGVGIMGLH 179

Query: 191 GMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GMGGVGKTTL   I+NKF E+   F+ VIW+V+S+ ++L  +QE I E
Sbjct: 180 GMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAE 227

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
24461863	889	NBS-LRR type disease resistance protein	0.760	0.203	0.631	1e-69
24461861	890	NBS-LRR type disease resistance protein	0.794	0.212	0.624	1e-67
24461864	899	NBS-LRR type disease resistance protein	0.794	0.210	0.608	5e-66
24461865	892	NBS-LRR type disease resistance protein	0.798	0.213	0.621	8e-66
24461866	890	NBS-LRR type disease resistance protein	0.794	0.212	0.570	3e-59
255553135	894	Disease resistance protein RFL1, putativ	0.781	0.208	0.446	3e-40
359482676	896	PREDICTED: probable disease resistance p	0.789	0.209	0.441	2e-39
225462595	897	PREDICTED: probable disease resistance p	0.789	0.209	0.449	5e-39
359483035	897	PREDICTED: probable disease resistance p	0.789	0.209	0.445	2e-38
147779772	910	hypothetical protein VITISV_011527 [Viti	0.785	0.205	0.451	5e-38

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 163/228 (71%), Gaps = 47/228 (20%)

Query: 49  NILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQ 108
           NILQI+IDGA+FNRC+DCFLGKAA IRNLQ+NVVALETELGKLIEAKNDV+ARVVN ERQ
Sbjct: 3   NILQIAIDGAVFNRCMDCFLGKAAYIRNLQENVVALETELGKLIEAKNDVMARVVNTERQ 62

Query: 109 QTMTRLNKVQGWLS-------------------------------------RFGKKVAKK 131
             MTRLNKVQGWLS                                     +FGK+VAKK
Sbjct: 63  PMMTRLNKVQGWLSGVDAVKAEADELIRHGSQEIEKLCLGGYCSKNWKSSYKFGKQVAKK 122

Query: 132 LRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYG 191
           LRDAGTLMA G FEVVAERAPES A         VG+Q +LE VWRCL  E VGIVGLYG
Sbjct: 123 LRDAGTLMAEGVFEVVAERAPESAA---------VGMQSRLEPVWRCLVEEPVGIVGLYG 173

Query: 192 MGGVGKTTLLTHINNKFL-ESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           MGGVGKTTLLTH+NNKFL +   +F+++IWVV+SKD ++E IQE IG+
Sbjct: 174 MGGVGKTTLLTHLNNKFLGQRDFHFDFLIWVVVSKDLQIEKIQEIIGK 221

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 158/229 (68%), Gaps = 40/229 (17%)

Query: 49  NILQISI--DGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAE 106
           NI QISI  DGA FNRCLDCFLGKAA I NLQ N+VAL+TEL KLI AKND++ RV +AE
Sbjct: 3   NICQISISCDGAFFNRCLDCFLGKAAYISNLQDNLVALDTELRKLIAAKNDLMRRVNDAE 62

Query: 107 RQQTMTRLNKVQGWLSR-------------------------------------FGKKVA 129
           RQQ M RL++VQ W+SR                                     FGK+VA
Sbjct: 63  RQQ-MRRLDQVQVWVSRVETVETEADAFIGDGTQEIEKLCLGGYCSKNCKSSYKFGKQVA 121

Query: 130 KKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGL 189
           +KLRD  TLM  G FEVVA++ PE   DERP EPTVVGLQ QLE VWRCL  E VGIVGL
Sbjct: 122 RKLRDIKTLMGEGVFEVVADKVPEPAVDERPTEPTVVGLQSQLEEVWRCLVEEPVGIVGL 181

Query: 190 YGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           YGMGGVGKTTLLTHINNKFL SPTNF+ VI VV+SKD RLE+IQE IGE
Sbjct: 182 YGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 160/230 (69%), Gaps = 41/230 (17%)

Query: 49  NILQISI--DGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAE 106
           NILQISI  DG  FNRCLDCFLGKAA +RNLQKNV AL+ EL KLI  K+DV+ARVVNAE
Sbjct: 3   NILQISISCDGTCFNRCLDCFLGKAAYVRNLQKNVEALKNELPKLIAKKDDVMARVVNAE 62

Query: 107 RQQTMTRLNKVQGWLSR-------------------------------------FGKKVA 129
           RQQ MTRLN+VQ WLSR                                     FGK+V 
Sbjct: 63  RQQMMTRLNEVQLWLSRVDAVTAGADELIRIGSQEIEKLCLGGYCSKNCKSSKKFGKQVD 122

Query: 130 KKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGL 189
           KKL D   L+A G+F VVA+RAPESVADERPIEP V G+Q QLE VWRCL  E VGIVGL
Sbjct: 123 KKLSDVKILLAEGSFAVVAQRAPESVADERPIEPAV-GIQSQLEQVWRCLVEEPVGIVGL 181

Query: 190 YGMGGVGKTTLLTHINNKFL-ESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           YGMGGVGKTTLLTH+NNKFL +   +F+++IWVV+SKD ++E IQE IG+
Sbjct: 182 YGMGGVGKTTLLTHLNNKFLGQRDFHFDFLIWVVVSKDLQIEKIQEIIGK 231

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 141/227 (62%), Positives = 155/227 (68%), Gaps = 37/227 (16%)

Query: 49  NILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQ 108
           NI QI+ DGA+FNRCLDCFLGKAA I+NL++N+  LETELGKLI+AK DV+ RV  AER 
Sbjct: 3   NIFQITCDGALFNRCLDCFLGKAAYIKNLKQNLADLETELGKLIDAKEDVMRRVNTAERH 62

Query: 109 QTMTRLNKVQGWLSR-------------------------------------FGKKVAKK 131
             M RLNKVQGWLSR                                     FGK+VA+K
Sbjct: 63  PMMKRLNKVQGWLSRVEAAKSDGDKLITCGSQEIKKLCLGGYCSKNCKSSYEFGKQVARK 122

Query: 132 LRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYG 191
           L D  TLMA  AFE VAE  P+   DERP EPTVVGLQ Q E V  CLE ES  IVGLYG
Sbjct: 123 LGDVKTLMAEEAFEAVAEEVPQPAVDERPTEPTVVGLQSQFEQVCNCLEEESARIVGLYG 182

Query: 192 MGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           MGGVGKTTLLTHI+NKF++SPTNFNYVIWVV SKD RLENIQETIGE
Sbjct: 183 MGGVGKTTLLTHIHNKFIQSPTNFNYVIWVVASKDLRLENIQETIGE 229

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/228 (57%), Positives = 149/228 (65%), Gaps = 39/228 (17%)

Query: 49  NILQISIDGA-IFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAER 107
           N+  + I  + IF RCLD  L +A  I  L+ N+  L+T+L +LIEAK+DV+ RV  AER
Sbjct: 3   NVFGVQIPWSNIFPRCLDWILNEAKYISQLEDNLDDLQTKLEQLIEAKDDVMNRVEIAER 62

Query: 108 QQTMTRLNKVQGWLSR-------------------------------------FGKKVAK 130
           QQ M+RLN+VQGW+SR                                     FGKKV K
Sbjct: 63  QQ-MSRLNQVQGWVSRVEAVKAEADQLIRVGSQEIERLCLWGYCSKNCKSSYDFGKKVTK 121

Query: 131 KLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLY 190
           KL+   TLM  G FEVVAE+ P + A ERP EPTV+GLQ QLE VWRCL  E  GIVGLY
Sbjct: 122 KLQLVETLMGEGIFEVVAEKVPGAAATERPTEPTVIGLQSQLEQVWRCLVEEPAGIVGLY 181

Query: 191 GMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           GMGGVGKTTLLTHINNKFLES TNFNYVIWVV+SKD RLENIQETIGE
Sbjct: 182 GMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 229

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553135|ref|XP_002517610.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223543242|gb|EEF44774.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 126/215 (58%), Gaps = 29/215 (13%)

Query: 51  LQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQT 110
            Q+    ++  +CL C  G+ A I  L+ N+VAL+T   +L E K+DV+ ++ + E  Q 
Sbjct: 5   FQVQCGDSLIRQCLKCTAGQGAYICKLEDNLVALQTATEELRELKDDVIQKL-SIEEGQR 63

Query: 111 MTRLNKVQGWLSR---------------------------FGKKVAKKLRDAGTLMANGA 143
           M RL +VQGW+SR                           FG+ VAKKL D   +   G 
Sbjct: 64  MKRLKQVQGWISRAEAKITEVDELIKEGLPKILNCKSRYIFGRSVAKKLEDVIAMKRKGD 123

Query: 144 FEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTH 203
           F+VVAERA      ERP EPTV GL+  L  VW+CL  E VG+VG+YGMGGVGKTT+LT 
Sbjct: 124 FKVVAERAAGEAVVERPSEPTV-GLESILNRVWKCLVEEEVGVVGIYGMGGVGKTTILTQ 182

Query: 204 INNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           INN F+ SP +F  VIWVV+SKD RL+ +QE I +
Sbjct: 183 INNMFVTSPNDFVAVIWVVVSKDLRLDKVQEEIAK 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482676|ref|XP_002281742.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 127/229 (55%), Gaps = 41/229 (17%)

Query: 49  NILQISIDGA-IFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAER 107
           N+  +SI    I  RC DC   +A  I  LQ+N V L TEL KL E +NDV  +V  AER
Sbjct: 3   NVCSVSISTEDIAGRCCDCTAARANYICKLQENRVTLRTELQKLRELRNDVKRKVDVAER 62

Query: 108 QQTMTRLNKVQGWLSR--------------------------------------FGKKVA 129
           QQ M RL++VQGWLSR                                       GKKV 
Sbjct: 63  QQ-MKRLDQVQGWLSRVEDMETEVTQLIGDGAENIEEKRFCGSCYPKHCISSYTLGKKVV 121

Query: 130 KKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGL 189
           +KL+    LM++G FEVVA+  P +  +E P   T VGL+   + VWRCL  E VG++GL
Sbjct: 122 RKLQQVAALMSDGRFEVVADIVPPAAVEEIP-SGTTVGLESTFDRVWRCLGEEHVGMIGL 180

Query: 190 YGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           YG+GGVGKTTLLT INN FL++  NF+ VIWVV+SK   L+ +Q  I E
Sbjct: 181 YGLGGVGKTTLLTQINNHFLKTSHNFDVVIWVVVSKTPNLDEVQNEIWE 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462595|ref|XP_002270572.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 126/229 (55%), Gaps = 41/229 (17%)

Query: 49  NILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQ 108
           N+  +SI       C DC + +A  I  L +N V L TEL KL E KNDV  +V  AERQ
Sbjct: 3   NVFSVSISTNDIAGCCDCTVARANYIFKLAENRVTLRTELQKLRELKNDVNRKVDVAERQ 62

Query: 109 QTMTRLNKVQGWLSR--------------------------------------FGKKVAK 130
           Q M RL++VQGWLSR                                       GKKVA+
Sbjct: 63  Q-MKRLDQVQGWLSRVEAMETEVGQLIGDGAETIEEKRLRGCCHPKHCISSYTLGKKVAR 121

Query: 131 KLRDAGTLMANGA-FEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGL 189
           KL+D  TLM+ G  FEVVA+  P +  +E P  PTV GL+   + VWR LE E VG++GL
Sbjct: 122 KLQDTATLMSEGRNFEVVADIVPPAPVEEIPGRPTV-GLESTFDKVWRSLEEEHVGMIGL 180

Query: 190 YGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           YG+GGVGKTTLL  INN FL +  NF+ VIWVV+SK   LE +Q  I E
Sbjct: 181 YGLGGVGKTTLLAQINNHFLRTSHNFDVVIWVVVSKTPNLERVQNEIWE 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483035|ref|XP_003632886.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 126/229 (55%), Gaps = 41/229 (17%)

Query: 49  NILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQ 108
           N+  +SI       C DC + +A  I  L +N V L TEL KL E KNDV  +V  AERQ
Sbjct: 3   NVFSVSISTNDIAGCCDCTVARANYIFKLAENRVTLRTELQKLRELKNDVNRKVDVAERQ 62

Query: 109 QTMTRLNKVQGWLSR--------------------------------------FGKKVAK 130
           Q M RL++VQGWLS+                                       GKKVA+
Sbjct: 63  Q-MKRLDQVQGWLSKVEAMETEVGQLIGDGAETIEEKRLRGCCHPKHCISSYTLGKKVAR 121

Query: 131 KLRDAGTLMANGA-FEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGL 189
           KL+D  TLM+ G  FEVVA+  P +  +E P  PTV GL+   + VWR LE E VG++GL
Sbjct: 122 KLQDTATLMSEGRNFEVVADIVPPAPVEEIPGRPTV-GLESTFDKVWRSLEEEHVGMIGL 180

Query: 190 YGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           YG+GGVGKTTLL  INN FL +  NF+ VIWVV+SK   LE +Q  I E
Sbjct: 181 YGLGGVGKTTLLAQINNHFLRTSHNFDVVIWVVVSKTPNLERVQNEIWE 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779772|emb|CAN65731.1| hypothetical protein VITISV_011527 [Vitis vinifera]

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 125/228 (54%), Gaps = 41/228 (17%)

Query: 50  ILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQ 109
           I ++SI       C DC   +A  I  L +N V L TEL KL E KNDV  +V  AERQQ
Sbjct: 46  IGKVSISTNDIAGCCDCTAARANYICKLAENRVTLRTELQKLRELKNDVNRKVDVAERQQ 105

Query: 110 TMTRLNKVQGWLSR--------------------------------------FGKKVAKK 131
            M RL++VQGWLSR                                       GKKVA+K
Sbjct: 106 -MKRLDQVQGWLSRVEAMETEVGQLIGDGAETIEEKRLRGCCHPKHCISXYTLGKKVARK 164

Query: 132 LRDAGTLMANGA-FEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGESVGIVGLY 190
           L+D  TLM+ G  FEVVA+  P +  +E P  PTV GL+   + VWR LE E VG++GLY
Sbjct: 165 LQDTATLMSEGRNFEVVADIVPPAPVEEIPGRPTV-GLESTFDKVWRSLEEEHVGMIGLY 223

Query: 191 GMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
           G+GGVGKTTLL  INN FL +  NF+ VIWVV+SK   LE +Q  I E
Sbjct: 224 GLGGVGKTTLLAQINNHFLRTSHNFDVVIWVVVSKTPNLERVQNEIWE 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.483	0.130	0.382	1.7e-22
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.474	0.126	0.347	1.9e-22
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.487	0.130	0.396	4.2e-22
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.483	0.128	0.391	1.2e-21
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.483	0.129	0.370	1.2e-21
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.483	0.118	0.336	1.1e-20
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.462	0.129	0.385	2.1e-20
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.483	0.128	0.344	2.4e-20
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.483	0.127	0.353	3.1e-20
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.466	0.128	0.362	5.7e-20

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 44/115 (38%), Positives = 62/115 (53%)

Query:   124 FGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGES 183
             +G++V   L     L + G FE VA  A  +V +ERP++PT+VG +  LE  W  L  + 
Sbjct:   115 YGRRVFLMLNIVEDLKSKGIFEEVAHPATRAVGEERPLQPTIVGQETILEKAWDHLMDDG 174

Query:   184 XXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                          KTTLLT INN+F ++      VIWVV+S D ++  IQ+ IGE
Sbjct:   175 TKIMGLYGMGGVGKTTLLTQINNRFCDTDDGVEIVIWVVVSGDLQIHKIQKEIGE 229

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 40/115 (34%), Positives = 63/115 (54%)

Query:   124 FGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGES 183
             +G++V   +++   L +NG FE+VA  AP+   + RPI+PT++G +   +  W  L  + 
Sbjct:   115 YGQRVFLMIKEVENLNSNGFFEIVAAPAPK--LEMRPIQPTIMGRETIFQRAWNRLMDDG 172

Query:   184 XXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                          KTTLLT I+N   ++    + VIWVV+S D ++  IQE IGE
Sbjct:   173 VGTMGLYGMGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGE 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
 Identities = 46/116 (39%), Positives = 65/116 (56%)

Query:   123 RFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             R+GK+V   L++  +L + G F+VV+E  P +  DE P +PT+VG ++ LE  W  L  +
Sbjct:   115 RYGKRVIMMLKEVESLSSQGFFDVVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLMED 174

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                           KTTLLT INNKF +    F+ VIWVV+S+ S +  IQ  I E
Sbjct:   175 GSGILGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAE 230

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 45/115 (39%), Positives = 62/115 (53%)

Query:   124 FGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGES 183
             +GK+V   L++  +L + G F+ V    P +  +E PI+PT+VG +  LE VW  L  + 
Sbjct:   116 YGKRVVLMLKEIESLSSQGDFDTVTLATPIARIEEMPIQPTIVGQETMLERVWTRLTEDG 175

Query:   184 XXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                          KTTLLT INNKF E  + F  VIWVV+SK   +  IQ  IG+
Sbjct:   176 DEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGK 230

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 43/116 (37%), Positives = 62/116 (53%)

Query:   123 RFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             R+GK+V K + +   L   G F VVAER   +  +ERP  P +V +   LE  W  L  +
Sbjct:   114 RYGKRVMKMIEEVEVLRYQGDFAVVAERVDAARVEERPTRP-MVAMDPMLESAWNRLMED 172

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                           KTTLL+HINN+F      F+ VIW+V+SK+ +++ IQ+ I E
Sbjct:   173 EIGILGLHGMGGVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEIWE 228

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 39/116 (33%), Positives = 62/116 (53%)

Query:   123 RFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             ++GK+V   L +   L + G F+ V++  P S  +ERP +PT+ G +  L+  W  L  +
Sbjct:   113 KYGKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEERPTQPTI-GQEEMLKKAWNRLMED 171

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                           KTTL   I+NKF E+   F+ VIW+V+S+ ++L  +QE I E
Sbjct:   172 GVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAE 227

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
 Identities = 44/114 (38%), Positives = 64/114 (56%)

Query:   124 FGKKVAKKLRDAGTLMANGAFEVVAERA-PESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             +G KV K L +   L++   FEVVA++  P+  A+++ I+ T VGL   +   W  L  +
Sbjct:   114 YGGKVMKNLEEVKELLSKKNFEVVAQKIIPK--AEKKHIQ-TTVGLDTMVGIAWESLIDD 170

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236
                           KTTLL  +NNKF+E  + F+ VIWVV+SKD +LE IQ+ I
Sbjct:   171 EIRTLGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQI 224

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
 Identities = 40/116 (34%), Positives = 62/116 (53%)

Query:   123 RFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             R+GK V  +LR+   L     F V+ E+A  S  +ERP++PT+VG +  L+  W+ L  +
Sbjct:   112 RYGKSVFLRLREVEKLKGE-VFGVITEQASTSAFEERPLQPTIVGQKKMLDKAWKHLMED 170

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                           KTTLLT + N F +    F+  IWVV+S++  +E IQ+ I +
Sbjct:   171 GTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQ 226

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
 Identities = 41/116 (35%), Positives = 59/116 (50%)

Query:   123 RFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGE 182
             ++GKKV   L +   L + G F+ V++  P S  +ERP +PT+ G +  LE  W  L  +
Sbjct:   112 KYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTI-GQEDMLEKAWNRLMED 170

Query:   183 SXXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238
                           KTTL   I+NKF E    F+ VIW+V+SK   +  +QE I E
Sbjct:   171 GVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAE 226

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
 Identities = 41/113 (36%), Positives = 60/113 (53%)

Query:   124 FGKKVAKKLRDAGTLMANGAFEVVAERAPESVADERPIEPTVVGLQLQLEHVWRCLEGES 183
             +G+KV+K L +   L++   F +VA+     V  E+ +  T VGL   +E  W  L  + 
Sbjct:   113 YGEKVSKMLEEVKELLSKKDFRMVAQEIIHKV--EKKLIQTTVGLDKLVEMAWSSLMNDE 170

Query:   184 XXXXXXXXXXXXXKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236
                          KTTLL  +NNKF+E  + F+ VIWVV+SKD + E IQ+ I
Sbjct:   171 IGTLGLYGMGGVGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQFEGIQDQI 223

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034584001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (898 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	5e-12

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 172 LEHVWRCL--EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL 229
           +E +   L    +++G+VG+ GMGGVGKTTL   I N       +F+ V WVV+SK    
Sbjct: 5   IEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDD-SVGGHFDSVAWVVVSKTYTE 63

Query: 230 ENIQETIGE 238
             +Q+ I +
Sbjct: 64  FRLQKDILQ 72

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.87
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.38
COG0488	530	Uup ATPase components of ABC transporters with dup	99.11
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.79
cd01128	249	rho_factor Transcription termination factor rho is	98.78
PRK09376	416	rho transcription termination factor Rho; Provisio	98.68
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.64
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.55
TIGR00767	415	rho transcription termination factor Rho. Members	98.36
PRK11147	635	ABC transporter ATPase component; Reviewed	98.33
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.3
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.15
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.1
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.09
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.09
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.03
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.03
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.95
PTZ00202	550	tuzin; Provisional	97.94
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.93
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.92
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.77
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.75
COG4559	259	ABC-type hemin transport system, ATPase component	97.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.7
PRK13342	413	recombination factor protein RarA; Reviewed	97.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.68
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.67
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.67
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.66
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.66
PLN03073	718	ABC transporter F family; Provisional	97.66
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.65
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.65
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.65
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.65
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.63
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.63
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.63
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.63
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.63
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.62
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.62
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.62
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.61
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.61
COG0488	530	Uup ATPase components of ABC transporters with dup	97.61
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.61
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.6
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.6
KOG2028	554	consensus ATPase related to the helicase subunit o	97.6
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.59
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.59
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.59
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.59
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.59
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.58
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.58
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.58
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.58
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.58
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.57
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.57
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.57
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.57
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.57
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.56
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.56
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.56
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.56
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.55
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.55
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.54
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.54
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.54
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.53
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.53
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.53
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.53
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.53
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.52
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.52
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.52
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.52
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.51
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.51
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.51
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.5
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.5
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.5
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.5
PRK05480	209	uridine/cytidine kinase; Provisional	97.49
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.49
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.49
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.48
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.48
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.48
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.48
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.48
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.47
PRK06696	223	uridine kinase; Validated	97.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.46
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.46
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.45
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.45
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.45
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.45
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.45
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.45
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.44
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.44
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.44
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.44
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.44
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.44
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.44
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.44
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.44
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.43
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.43
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.43
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.43
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.43
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.43
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.43
PLN03025	319	replication factor C subunit; Provisional	97.42
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.42
PRK10908	222	cell division protein FtsE; Provisional	97.42
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.42
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.42
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.42
cd03246	173	ABCC_Protease_Secretion This family represents the	97.42
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.41
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.41
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.41
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.41
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.41
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.41
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.4
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.4
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.4
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.4
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.4
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.4
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.4
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.39
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.39
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.39
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.39
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.39
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.39
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.38
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.38
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.38
PRK11147	635	ABC transporter ATPase component; Reviewed	97.38
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.38
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	97.38
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.38
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.38
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.37
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.37
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.37
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.37
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.37
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.37
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.37
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	97.36
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.36
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.36
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.36
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.36
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.36
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.36
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.35
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.35
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.35
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.35
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.35
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.35
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.34
PRK10938	490	putative molybdenum transport ATP-binding protein	97.34
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.34
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.34
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.34
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.34
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.34
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.33
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.33
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.33
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.33
PRK12402	337	replication factor C small subunit 2; Reviewed	97.33
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.33
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.33
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.32
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.32
PRK06547	172	hypothetical protein; Provisional	97.32
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.32
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.32
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.32
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.32
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.32
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.32
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.32
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.32
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.31
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.31
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.31
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.31
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.31
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.31
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.31
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.31
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.3
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.29
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.29
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.28
PRK15455	644	PrkA family serine protein kinase; Provisional	97.28
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.28
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.28
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.28
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.28
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.28
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.28
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.28
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.28
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.27
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.27
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.27
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.27
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.27
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.27
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.27
COG4133	209	CcmA ABC-type transport system involved in cytochr	97.27
smart00382	148	AAA ATPases associated with a variety of cellular	97.26
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.26
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.26
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.26
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.25
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.25
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.25
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.25
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.25
PRK13409	590	putative ATPase RIL; Provisional	97.25
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.24
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	97.24
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.24
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.24
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.24
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.23
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.23
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.23
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.23
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.23
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.22
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.22
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.21
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.21
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.21
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.21
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.21
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.21
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.2
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.2
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.2
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.2
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.19
PLN03073	718	ABC transporter F family; Provisional	97.19
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.19
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.19
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.19
KOG0062	582	consensus ATPase component of ABC transporters wit	97.18
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.18
PRK03695	248	vitamin B12-transporter ATPase; Provisional	97.18
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.18
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.18
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.17
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.17
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.16
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.16
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.16
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.15
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.15
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.15
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.15
PRK06762	166	hypothetical protein; Provisional	97.15
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.14
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.14
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.14
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.14
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.14
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.14
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.13
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.13
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.13
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.12
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.12
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.12
PF13173	128	AAA_14: AAA domain	97.12
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.11
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.11
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.11
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.11
PRK10938	490	putative molybdenum transport ATP-binding protein	97.11
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.11
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.1
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.1
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.1
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.09
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.09
PRK04195	482	replication factor C large subunit; Provisional	97.09
PF00004	132	AAA: ATPase family associated with various cellula	97.09
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.08
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.08
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.07
PRK07667	193	uridine kinase; Provisional	97.07
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.07
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.07
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.07
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.07
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.07
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.06
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.06
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.06
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.05
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.05
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.05
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.04
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.04
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.04
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.04
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.03
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.02
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	97.02
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.02
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.02
PHA02544	316	44 clamp loader, small subunit; Provisional	97.02
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.02
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.01
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.01
PRK13409	590	putative ATPase RIL; Provisional	96.99
PRK13531	498	regulatory ATPase RavA; Provisional	96.99
PRK13341	725	recombination factor protein RarA/unknown domain f	96.99
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.99
PHA00729	226	NTP-binding motif containing protein	96.99
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.99
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.98
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	96.97
CHL00181	287	cbbX CbbX; Provisional	96.97
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	96.96
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.96
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.96
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.95
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.95
PRK09183	259	transposase/IS protein; Provisional	96.94
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.94
PRK05541	176	adenylylsulfate kinase; Provisional	96.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	96.93
CHL00095	821	clpC Clp protease ATP binding subunit	96.93
PRK12608	380	transcription termination factor Rho; Provisional	96.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.92
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	96.92
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.92
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.92
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.91
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.9
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.9
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	96.89
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.89
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.89
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.89
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	96.88
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.88
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.88
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.87
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.87
PRK08084	235	DNA replication initiation factor; Provisional	96.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.86
PRK05057	172	aroK shikimate kinase I; Reviewed	96.86
COG0411	250	LivG ABC-type branched-chain amino acid transport	96.85
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.84
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.83
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.82
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.82
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.82
COG4987	573	CydC ABC-type transport system involved in cytochr	96.82
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	96.81
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	96.81
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	96.81
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	96.8
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.8
PRK08727	233	hypothetical protein; Validated	96.79
PRK03846	198	adenylylsulfate kinase; Provisional	96.79
PLN02796	347	D-glycerate 3-kinase	96.78
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.78
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.78
PRK10865	857	protein disaggregation chaperone; Provisional	96.77
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.76
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.76
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.75
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.73
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	96.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.72
PLN02165	334	adenylate isopentenyltransferase	96.72
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.71
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.71
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.7
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.7
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.69
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.69
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.68
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.68
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.67
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.67
PRK09087	226	hypothetical protein; Validated	96.67
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.67
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	96.66
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	96.66
PRK06893	229	DNA replication initiation factor; Validated	96.65
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.65
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.65
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	96.64
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.64
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.63
PRK10416	318	signal recognition particle-docking protein FtsY;	96.63
COG4586	325	ABC-type uncharacterized transport system, ATPase	96.62
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.61
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	96.6
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	96.6
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.6
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	96.59
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.59
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.59
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.58
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.58
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.58
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.57
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	96.57
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	96.56
PLN02318	656	phosphoribulokinase/uridine kinase	96.56
KOG0927	614	consensus Predicted transporter (ABC superfamily)	96.54
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.54
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.54
PLN03211	659	ABC transporter G-25; Provisional	96.54
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	96.54
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.54
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	96.54
COG1123	539	ATPase components of various ABC-type transport sy	96.53
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	96.52
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.52
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.51
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.51
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.51
PRK08181	269	transposase; Validated	96.51
PRK10536	262	hypothetical protein; Provisional	96.5
KOG0062	582	consensus ATPase component of ABC transporters wit	96.49
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.49
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.49
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.49
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.48
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.48
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.47
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.47
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	96.47
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	96.47
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.47
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.46
PRK14738	206	gmk guanylate kinase; Provisional	96.45
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.45
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.45
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	96.44
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	96.44
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.44
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.44
PRK13765	637	ATP-dependent protease Lon; Provisional	96.44
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.44
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	96.43
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.43
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.42
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.42
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.41
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	96.41
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	96.41
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.41
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.4
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.4
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.4
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.39
PRK14527	191	adenylate kinase; Provisional	96.38
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.38
cd03116	159	MobB Molybdenum is an essential trace element in t	96.37
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.37
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.37
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.37
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.37

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.87  E-value=3.3e-21  Score=187.68  Aligned_cols=179  Identities=39%  Similarity=0.593  Sum_probs=126.9

Q ss_pred             HhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cccccHHHHHHHHH---------
Q 046124           60 FNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQ-------TMTRLNKVQGWLSR---------  123 (238)
Q Consensus        60 ~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~-------~~~~~~~~~~Wl~~---------  123 (238)
                      +.++++++.++...+.+...++..|++++..++.+++|++++...-....       ..........|+.+         
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~   88 (889)
T KOG4658|consen    9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN   88 (889)
T ss_pred             hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677788888888889999999999999999999999766532111110       01223344455544         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHhcCCcccccc-cCCCCCCCCCCCCCcc-eecHHHHH
Q 046124          124 ----------------------------FGKKVAKKLRDAGTLMANGAFEVVAE-RAPESVADERPIEPTV-VGLQLQLE  173 (238)
Q Consensus       124 ----------------------------~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vG~~~~~~  173 (238)
                                                  +++++.+.+++++....++.|..... ..+...+..+|..+.. ||.+.+++
T Consensus        89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~  168 (889)
T KOG4658|consen   89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLE  168 (889)
T ss_pred             HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHH
Confidence                                        12223333333333333344444432 1222234444444333 99999999


Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHhC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE  238 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il~  238 (238)
                      .++..|.+++..+|||+||||+||||||+.|+|+...+.++||.+|||+||++|+..+|+++|++
T Consensus       169 kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~  233 (889)
T KOG4658|consen  169 KLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE  233 (889)
T ss_pred             HHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence            99999999887999999999999999999999999339999999999999999999999999974

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.38  E-value=8.3e-13  Score=113.74  Aligned_cols=69  Identities=35%  Similarity=0.577  Sum_probs=61.5

Q ss_pred             cHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          168 LQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       168 ~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      |+..+++|.+.|.+  ++.++|+|+||||+||||||..+|++. ...++|+.++||.++..++...+++.|+
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~   71 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQIL   71 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccc
Confidence            57789999999988  788999999999999999999999986 4789999999999999999998888876

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.11  E-value=6.6e-11  Score=110.12  Aligned_cols=155  Identities=21%  Similarity=0.204  Sum_probs=87.7

Q ss_pred             cccchhHHhhhhHhh----HhhHHHHHHHHH-hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 046124           45 RICRNILQISIDGAI----FNRCLDCFLGKA-ASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQG  119 (238)
Q Consensus        45 ~~~g~~~~~~l~~v~----~~~l~~~~~~e~-~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~  119 (238)
                      .+.|+++-+++|+.|    |++++++..+++ .|.+||..+++.-...++...+.          .+++  ++..+..+.
T Consensus       198 ~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~----------~~~~--~~~~~~~~~  265 (530)
T COG0488         198 RYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAA----------YEKQ--QKELAKEQE  265 (530)
T ss_pred             hCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHHH----------HHHH--HHHHHHHHH
Confidence            466777777766665    455555555566 44555555555444333222222          2222  366788999


Q ss_pred             HHHHHH------HHHHHHHHHHHHHHhc---------C---CcccccccC-CCCCCCCCCCCCcceec-HHHHHHHHHHh
Q 046124          120 WLSRFG------KKVAKKLRDAGTLMAN---------G---AFEVVAERA-PESVADERPIEPTVVGL-QLQLEHVWRCL  179 (238)
Q Consensus       120 Wl~~~~------~~~~~~i~~i~~~~~~---------~---~~~~~~~~~-~~~~~~~~~~~~~~vG~-~~~~~~l~~~L  179 (238)
                      |+.++.      +++..++++++++...         .   .+.+...+. ++..+......+.-++. ...++++...+
T Consensus       266 ~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i  345 (530)
T COG0488         266 WIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRI  345 (530)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEe
Confidence            999943      3555566666655521         1   113333221 23333333333333322 23455555556


Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++  +|+|+|+||+|||||+|.|.+...+..+
T Consensus       346 ~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G  377 (530)
T COG0488         346 DRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSG  377 (530)
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence            6677  9999999999999999999876533333

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.09  E-value=2.5e-10  Score=104.08  Aligned_cols=147  Identities=19%  Similarity=0.191  Sum_probs=96.1

Q ss_pred             HhhhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH-------
Q 046124           52 QISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRF-------  124 (238)
Q Consensus        52 ~~~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~~-------  124 (238)
                      +-.++.+ |++++++..++..|+.|.++++...+.|++..+..          +..++ ++.+...+..+.++       
T Consensus       279 QDfln~v-CT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q~K----------~~~kq-qk~i~~~K~~ia~~g~g~a~~  346 (614)
T KOG0927|consen  279 QDFLNGV-CTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQMK----------AYEKQ-QKQIAHMKDLIARFGHGSAKL  346 (614)
T ss_pred             hhhhhhH-hhhhheecccceeeecCCHHHHhhHHHHHhHHHHH----------HHHHH-HhHHHHhhHHHHhhcccchhh
Confidence            3458888 99999999999999999999999888888776654          33333 37788888888884       


Q ss_pred             HHHHHHHHHHHHHHHhcC-----------CcccccccCCCCCCCCCCCCCcceecH---HHHHHHHHHhcCCcceEEEEE
Q 046124          125 GKKVAKKLRDAGTLMANG-----------AFEVVAERAPESVADERPIEPTVVGLQ---LQLEHVWRCLEGESVGIVGLY  190 (238)
Q Consensus       125 ~~~~~~~i~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~vG~~---~~~~~l~~~L~~~~~~vI~Iv  190 (238)
                      ++++..+.+.+.++..++           .|.+......++++.-....+  +|.+   ..+.++..-+.-+.  +|++|
T Consensus       347 ~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~--F~y~~~~~iy~~l~fgid~~s--rvAlV  422 (614)
T KOG0927|consen  347 GRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVS--FGYSDNPMIYKKLNFGIDLDS--RVALV  422 (614)
T ss_pred             hHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccc--cCCCCcchhhhhhhcccCccc--ceeEe
Confidence            455555555555444321           122222222122222211111  3332   34555555554455  89999


Q ss_pred             ecCCCchhHHHHHHHhhhccCCCC
Q 046124          191 GMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       191 G~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      ||||+|||||+|++|++..+..++
T Consensus       423 GPNG~GKsTLlKl~~gdl~p~~G~  446 (614)
T KOG0927|consen  423 GPNGAGKSTLLKLITGDLQPTIGM  446 (614)
T ss_pred             cCCCCchhhhHHHHhhcccccccc
Confidence            999999999999999998665554

>PLN03210 Resistant to P

Probab=98.79  E-value=6.9e-09  Score=105.38  Aligned_cols=57  Identities=25%  Similarity=0.529  Sum_probs=49.0

Q ss_pred             CcceecHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEE
Q 046124          163 PTVVGLQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVV  222 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~  222 (238)
                      ..+||++...+++..+|.  .++.++|+||||||+||||||+.+|+..   ..+|+..+|+.
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~  242 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFID  242 (1153)
T ss_pred             ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEee
Confidence            467999999999998875  3578899999999999999999999965   57899888763

syringae 6; Provisional

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.78  E-value=1.5e-08  Score=86.07  Aligned_cols=50  Identities=20%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC--CCHHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD--SRLENIQETI  236 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~--~~~~~i~~~I  236 (238)
                      .+++|+|++|+|||||++.+|+.. ... +|+.++|++++++  +++.++++.|
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I   68 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSV   68 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence            399999999999999999999987 433 8999999998888  8999999987

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.68  E-value=2.6e-08  Score=88.97  Aligned_cols=61  Identities=15%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC--CHHHHHHHHh
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS--RLENIQETIG  237 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~--~~~~i~~~Il  237 (238)
                      +++++.. +.-.+++|+|++|+||||||+.||+.. .. .+|++++||++++.+  ++.+++++|+
T Consensus       159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIl  222 (416)
T PRK09376        159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVK  222 (416)
T ss_pred             eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence            3444433 233499999999999999999999987 33 389999999999999  8899998874

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.4e-07  Score=83.26  Aligned_cols=151  Identities=13%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             hhhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH-HHHHHHH
Q 046124           53 ISIDGAIFNRCLDCFLGKAASIRNLQKNVVALET-ELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSR-FGKKVAK  130 (238)
Q Consensus        53 ~~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~-el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~-~~~~~~~  130 (238)
                      ..+|.| |+.|+.+..+++-|+.|.+.-+.++-. .+..+....+..+.+...-....  ....+.+.-.++ +.++..+
T Consensus       470 gFLD~V-CtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~G--kS~KqAEkq~Ke~ltrKq~K  546 (807)
T KOG0066|consen  470 GFLDSV-CTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEG--KSAKQAEKQVKEQLTRKQKK  546 (807)
T ss_pred             chHHHH-HHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHh
Confidence            568889 999999999999888777766654432 22222222222121111111111  111111111111 0000000


Q ss_pred             ---HH------HHHHHHHhc-----CCcccccccCCCCCCCCCCCCCcce-ecHHHHHHHHHHhcCCcceEEEEEecCCC
Q 046124          131 ---KL------RDAGTLMAN-----GAFEVVAERAPESVADERPIEPTVV-GLQLQLEHVWRCLEGESVGIVGLYGMGGV  195 (238)
Q Consensus       131 ---~i------~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v-G~~~~~~~l~~~L~~~~~~vI~IvG~gGv  195 (238)
                         +-      ....+++++     ..|.|+.++...|++.-.......| |.+..+.++.+-+.=+.  +|+||||||+
T Consensus       547 ~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGV  624 (807)
T KOG0066|consen  547 GGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGV  624 (807)
T ss_pred             ccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccc--eeEEECCCCc
Confidence               00      001111211     1455555444444444333333333 45555655554443334  8999999999


Q ss_pred             chhHHHHHHHhhh
Q 046124          196 GKTTLLTHINNKF  208 (238)
Q Consensus       196 GKTTLak~i~~~~  208 (238)
                      ||+||++++.+..
T Consensus       625 GKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  625 GKSTLLKLLIGKL  637 (807)
T ss_pred             cHHHHHHHHhcCC
Confidence            9999999999876

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=2.2e-08  Score=95.93  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      ||....++++...+..++  +++|+|+||+|||||++.|.+...+..+.
T Consensus       322 y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~  368 (638)
T PRK10636        322 YGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGE  368 (638)
T ss_pred             eCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            443334555555555667  99999999999999999999976444554

>TIGR00767 rho transcription termination factor Rho

Probab=98.36  E-value=8.7e-07  Score=79.61  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC--CCHHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD--SRLENIQETIG  237 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~--~~~~~i~~~Il  237 (238)
                      .+++|+|++|+|||||++.|++.. .. ++|+..+||+++++  .++.+++++|+
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I-~~-nhfdv~v~VlLIgER~~EVtDLqrsIl  221 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAI-TR-NHPEVELIVLLIDERPEEVTDMQRSVK  221 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhh-cc-cCCceEEEEEEcCCCCccHHHHHHHhh
Confidence            389999999999999999999987 33 48999999999977  79999999884

Members of this family differ in the specificity of RNA binding.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.33  E-value=1.2e-07  Score=90.78  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|++...+..+.
T Consensus       329 ~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~  375 (635)
T PRK11147        329 IDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGR  375 (635)
T ss_pred             ECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            443334455544555566  99999999999999999999975334443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.30  E-value=3.5e-06  Score=76.84  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=58.4

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      .++++.+...+.+...|...+  .|.++||+|+||||||+.+++.. .....|+.+.||++++.++..++..
T Consensus       175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~  243 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ  243 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence            346778889999999888765  78889999999999999999887 5556788999999999998887653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.15  E-value=1.4e-06  Score=69.67  Aligned_cols=44  Identities=30%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             ceecHHHHHHHHHHh---cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          165 VVGLQLQLEHVWRCL---EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L---~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++||++.++.+...|   .....+.+-|+|+.|+|||||++.++...
T Consensus         2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen    2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999998   23467899999999999999999998877

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.10  E-value=3.6e-06  Score=69.99  Aligned_cols=46  Identities=28%  Similarity=0.410  Sum_probs=34.2

Q ss_pred             CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++++.-++.     .+.+.-+-+|||+|+||||||+.|.++.
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~   74 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL   74 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred             HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence            577999998888755543     2456789999999999999999999976

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.09  E-value=6.6e-05  Score=71.80  Aligned_cols=46  Identities=24%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++|.+.....+...+.......+.|+|++|+||||||+.+++..
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3578998888888887766656689999999999999999999866

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.09  E-value=1.2e-05  Score=60.77  Aligned_cols=59  Identities=27%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC
Q 046124          167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR  228 (238)
Q Consensus       167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~  228 (238)
                      |++.....+...+.......+-|+|+.|+|||||++.+++.. .  ..-..++++..++...
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~   60 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLE   60 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhh
Confidence            677788888888877555689999999999999999999976 2  1123456666555443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.03  E-value=1.2e-06  Score=74.46  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ||....++++...+..++  +++|+||||+|||||+|.+++-.
T Consensus        12 y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          12 YGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             ECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence            444445555655566667  99999999999999999999866

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.03  E-value=1.7e-05  Score=71.49  Aligned_cols=73  Identities=21%  Similarity=0.161  Sum_probs=50.8

Q ss_pred             CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ..++||+.+++.+...|.+    +....+-|+|+.|+||||+++.++++. ......-..++|......+...++..|
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i  106 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI  106 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence            4678999999999888743    344567899999999999999999976 332222234555555555555555544

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.95  E-value=7.7e-06  Score=67.50  Aligned_cols=44  Identities=34%  Similarity=0.467  Sum_probs=36.9

Q ss_pred             ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++||+.+++.|..++..+....+.|+|+.|+|||||++.+.+..
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            48999999999999988766799999999999999999999865

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PTZ00202 tuzin; Provisional

Probab=97.94  E-value=0.00019  Score=65.44  Aligned_cols=67  Identities=19%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCcceecHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          162 EPTVVGLQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      ...++|++.+...+...|.+   +...++.|.|++|+|||||++.+.... .      ..+++.-+.  +..++++.|+
T Consensus       261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL  330 (550)
T PTZ00202        261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVV  330 (550)
T ss_pred             ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHH
Confidence            35779999999999888864   245689999999999999999999765 2      223333223  6688887775

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.93  E-value=2.8e-05  Score=69.33  Aligned_cols=75  Identities=19%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCCCCC---CEEEEEEeCCCCCHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF---NYVIWVVMSKDSRLENIQET  235 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F---d~~~wV~vs~~~~~~~i~~~  235 (238)
                      ..++|++.+++.|...|.+    +....+-|+|+.|+||||+++.++++........   -..+|+......+...++..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~   94 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE   94 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence            3678999999999888863    3445799999999999999999998752111111   13456665555555556555


Q ss_pred             Hh
Q 046124          236 IG  237 (238)
Q Consensus       236 Il  237 (238)
                      |+
T Consensus        95 i~   96 (365)
T TIGR02928        95 LA   96 (365)
T ss_pred             HH
Confidence            43

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.92  E-value=5.9e-05  Score=64.28  Aligned_cols=51  Identities=18%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      ....+.|+|++|+|||||++.+++.. .. +.+ ..+|+ ++...+..+++..|+
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~   92 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVA   92 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHH
Confidence            34589999999999999999999976 32 221 23343 334456667766654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.77  E-value=2.2e-05  Score=58.69  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.|.|+.|+||||+|+.+....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999865

...

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.75  E-value=7e-06  Score=69.58  Aligned_cols=42  Identities=33%  Similarity=0.366  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++++...+..++  .++|+||||.|||||+|.+.+-..+.++
T Consensus        18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            35556655566666  9999999999999999999995533333

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.70  E-value=1.6e-05  Score=65.44  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=28.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhc
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFL  209 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~  209 (238)
                      ++.+..-+..++  +.+|+||||.|||||+|.++++..
T Consensus        17 l~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          17 LDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             ccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccC
Confidence            334444445567  999999999999999999999874

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.70  E-value=1.1e-05  Score=65.47  Aligned_cols=29  Identities=38%  Similarity=0.657  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        14 ~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        14 AAERGE--VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344456  99999999999999999999865

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.68  E-value=4.9e-05  Score=69.32  Aligned_cols=46  Identities=33%  Similarity=0.383  Sum_probs=38.3

Q ss_pred             CcceecHHHHHH---HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEH---VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~---l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+..   +..++..+....+-++|++|+||||||+.+++..
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            457888877665   7777777777788999999999999999999865

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.68  E-value=9.7e-06  Score=66.84  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|.+......+
T Consensus        24 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          24 IKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            34455  9999999999999999999987533334

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00061  Score=64.94  Aligned_cols=47  Identities=30%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             CCcceecHHHHHHHHHHhc-----C-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          162 EPTVVGLQLQLEHVWRCLE-----G-ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~-----~-~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+-||.+..++.|+++|-     . -+-.++++|||+|+|||.|++.|....
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al  374 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL  374 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence            3455999999999999874     1 244699999999999999999999865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.67  E-value=1.1e-05  Score=67.84  Aligned_cols=41  Identities=32%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|....++++...+..++  .|+|+|+.|||||||++.|.+-.
T Consensus        13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            343344555555556677  99999999999999999999865

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.66  E-value=5.2e-05  Score=66.02  Aligned_cols=46  Identities=33%  Similarity=0.441  Sum_probs=38.5

Q ss_pred             CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|++..++.+..++.     .+....+-++|+.|+||||||+.+.+..
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            367999999999888775     2345568899999999999999999876

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.66  E-value=2e-05  Score=65.44  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=26.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        17 ~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          17 RGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             eceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33333344556  99999999999999999999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03073 ABC transporter F family; Provisional

Probab=97.66  E-value=7e-05  Score=72.81  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      .++++...+..++  +|+|+|+||+|||||++.|.+...+..+.
T Consensus       524 il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~  565 (718)
T PLN03073        524 LFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGT  565 (718)
T ss_pred             eEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCce
Confidence            3444444445566  99999999999999999999976344443

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=9.8e-06  Score=67.16  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++.+...+..++  +++|+|+||+|||||++.+.+......+
T Consensus        26 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         26 VFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             eeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            3444444455566  9999999999999999999987533333

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.65  E-value=3.9e-05  Score=58.59  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.+++..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            99999999999999999999866

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.65  E-value=1.4e-05  Score=66.04  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        15 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          15 LEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             eecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            344444445566  9999999999999999999997533444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.65  E-value=7.8e-05  Score=66.33  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             cceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhhcc----CCCCCCEEEE
Q 046124          164 TVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKFLE----SPTNFNYVIW  220 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~~~----v~~~Fd~~~w  220 (238)
                      +++|.++.+++++.++..      ...+++.++||.|+||||||+.|.+....    ..+.|-..-|
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            689999999999998864      24578899999999999999999987721    1345555566

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.63  E-value=1.5e-05  Score=65.83  Aligned_cols=35  Identities=34%  Similarity=0.414  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          16 LDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             ecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            333433444566  99999999999999999999865

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.63  E-value=4e-05  Score=63.44  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=26.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        22 ~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          22 GVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             eeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCc
Confidence            3333344556  99999999999999999999876

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.63  E-value=1.4e-05  Score=65.69  Aligned_cols=35  Identities=34%  Similarity=0.364  Sum_probs=27.4

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..+..++  +++|+|+||+|||||++.+++...+..+
T Consensus        21 ~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          21 LDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             EEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3344556  9999999999999999999997533444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.63  E-value=1.9e-05  Score=66.55  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        18 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        18 LKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence            334444445566  99999999999999999999865

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.63  E-value=1.5e-05  Score=66.11  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++-..+..+
T Consensus        18 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (220)
T cd03263          18 VDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSG   57 (220)
T ss_pred             ecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            333433444566  9999999999999999999987533334

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.62  E-value=3.8e-05  Score=58.02  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      .+.+.|+|+.|+||||+++.+......   ... -..++|+..+...+...+...|+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~   59 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEIL   59 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHH
Confidence            358999999999999999999986511   001 34567999988888888888775

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.62  E-value=9.7e-05  Score=69.88  Aligned_cols=46  Identities=28%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|++...+..+
T Consensus       334 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G  379 (556)
T PRK11819        334 FGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSG  379 (556)
T ss_pred             ECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            343334555555555667  9999999999999999999987533333

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.62  E-value=8e-05  Score=66.55  Aligned_cols=46  Identities=33%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             CcceecHHHH---HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQL---EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~---~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++||.+..+   .-|-..+..+.+.-.-+|||+|+||||||+.|.+..
T Consensus        24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~   72 (436)
T COG2256          24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT   72 (436)
T ss_pred             HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence            4567776654   234445566788889999999999999999999854

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.61  E-value=1.2e-05  Score=68.28  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .++++...+..++  +++|+|+||+|||||++.+.+-
T Consensus        21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         21 ALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhh
Confidence            3444444445566  9999999999999999999975

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.61  E-value=1.7e-05  Score=66.30  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        22 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         22 ILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             eeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3444444445566  9999999999999999999987533333

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.61  E-value=2.8e-05  Score=72.82  Aligned_cols=63  Identities=25%  Similarity=0.300  Sum_probs=44.4

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEE---EEEEeCCCCCHH
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYV---IWVVMSKDSRLE  230 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~---~wV~vs~~~~~~  230 (238)
                      +|....++++...+..++  +||+||.||+|||||++.|.+...+..+.....   ---+++|.....
T Consensus        13 ~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~   78 (530)
T COG0488          13 YGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD   78 (530)
T ss_pred             eCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence            566666777777777777  999999999999999999999774444543221   122566665544

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.61  E-value=5e-05  Score=63.00  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=25.2

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++|+|+||+|||||++.|++-..+..+.
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~   43 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLCGLDAPDEGD   43 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence            99999999999999999999875445555

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.60  E-value=1.8e-05  Score=65.95  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        21 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          21 LDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             ecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            333433444566  9999999999999999999987533333

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.60  E-value=1.8e-05  Score=66.15  Aligned_cols=35  Identities=34%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        16 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          16 VNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            334444445566  99999999999999999999865

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.60  E-value=9.9e-05  Score=65.37  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             cceecHHHHHH---HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC----CCHHHHHH
Q 046124          164 TVVGLQLQLEH---VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD----SRLENIQE  234 (238)
Q Consensus       164 ~~vG~~~~~~~---l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~----~~~~~i~~  234 (238)
                      +.||.+..+.+   |-.++..+...-+-+||++|+||||||+.|.+.. +...    ..+|..|-.    .|++++.+
T Consensus       139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife  211 (554)
T KOG2028|consen  139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFE  211 (554)
T ss_pred             HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHH
Confidence            44665544332   3344455777889999999999999999999865 2222    445655543    44444443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.59  E-value=4.8e-05  Score=62.93  Aligned_cols=28  Identities=32%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+-.
T Consensus        26 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        26 ITKGE--MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.59  E-value=1.7e-05  Score=65.51  Aligned_cols=35  Identities=31%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        16 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          16 LDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             eeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            333333344566  99999999999999999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.59  E-value=1.4e-05  Score=65.52  Aligned_cols=28  Identities=32%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+..
T Consensus        21 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        21 IEKGK--MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EeCCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence            34456  99999999999999999999876

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.59  E-value=5.2e-05  Score=61.23  Aligned_cols=33  Identities=21%  Similarity=0.492  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+-..+..+
T Consensus        22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          22 VKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             ECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence            34456  9999999999999999999986533334

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.59  E-value=8.4e-05  Score=61.22  Aligned_cols=28  Identities=39%  Similarity=0.534  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          23 VEKGE--IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=2.4e-05  Score=65.61  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY  217 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~  217 (238)
                      .++++..-+.+++  +|||+|.||+|||||+|.|.+-.++.++.-.+
T Consensus        42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v   86 (249)
T COG1134          42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV   86 (249)
T ss_pred             EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEE
Confidence            3444444555667  99999999999999999999987666666544

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.58  E-value=5.2e-05  Score=63.59  Aligned_cols=29  Identities=31%  Similarity=0.435  Sum_probs=25.0

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.+.+..
T Consensus        22 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          22 DVRRGE--ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344556  99999999999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.58  E-value=4.9e-05  Score=61.11  Aligned_cols=29  Identities=41%  Similarity=0.518  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.+.+..
T Consensus        22 ~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          22 NIEAGE--IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344556  99999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.58  E-value=1.6e-05  Score=69.41  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=26.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+-..+..+
T Consensus        15 ~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   48 (302)
T TIGR01188        15 KVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSG   48 (302)
T ss_pred             EEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            344456  9999999999999999999987533333

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.58  E-value=1.6e-05  Score=67.01  Aligned_cols=33  Identities=36%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 ~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          20 DVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3333344556  99999999999999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.57  E-value=1.6e-05  Score=67.92  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        27 il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G   67 (257)
T PRK11247         27 VLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAG   67 (257)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3444444444566  9999999999999999999987533334

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.57  E-value=1.6e-05  Score=66.99  Aligned_cols=35  Identities=34%  Similarity=0.483  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        37 l~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          37 LKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence            333333344456  99999999999999999999865

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.57  E-value=1.7e-05  Score=66.66  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+-..+..+
T Consensus        23 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          23 SINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            344556  9999999999999999999986533333

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.57  E-value=1.8e-05  Score=66.37  Aligned_cols=33  Identities=36%  Similarity=0.445  Sum_probs=26.3

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+...+..++  +++|+|+||+|||||++.+.+..
T Consensus        18 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          18 DVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CceEEecCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence            3333344556  99999999999999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.57  E-value=1.7e-05  Score=65.22  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..+..++  +++|+|+||+|||||++.|++...+..+
T Consensus        22 ~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G   56 (204)
T PRK13538         22 FTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAG   56 (204)
T ss_pred             EEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3344556  9999999999999999999987533333

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.56  E-value=6e-05  Score=62.22  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        18 l~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        18 LHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             ecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            334434445566  99999999999999999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.56  E-value=1.9e-05  Score=67.36  Aligned_cols=34  Identities=32%  Similarity=0.359  Sum_probs=26.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        23 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         23 TLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             EECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            344556  9999999999999999999987533333

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.56  E-value=2e-05  Score=65.86  Aligned_cols=40  Identities=28%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        16 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (230)
T TIGR03410        16 LRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSG   55 (230)
T ss_pred             ecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            344444455566  9999999999999999999987633333

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.56  E-value=1.7e-05  Score=65.87  Aligned_cols=28  Identities=43%  Similarity=0.578  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+-.
T Consensus        23 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          23 VPEGE--IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EcCCe--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34455  99999999999999999999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.55  E-value=2e-05  Score=65.00  Aligned_cols=28  Identities=36%  Similarity=0.428  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+..
T Consensus        23 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          23 VKKGE--VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.55  E-value=2.2e-05  Score=64.82  Aligned_cols=43  Identities=28%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.||....++.+...+..++  |++|+||.|+|||||++.|..-.
T Consensus        10 K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          10 KSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCc
Confidence            34666566666666666777  99999999999999999998755

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.55  E-value=5.9e-05  Score=62.60  Aligned_cols=28  Identities=32%  Similarity=0.450  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus        28 i~~G~--~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGE--IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.54  E-value=7.1e-05  Score=63.53  Aligned_cols=29  Identities=24%  Similarity=0.575  Sum_probs=24.6

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++|+|+||+|||||++.|.+...+..+.
T Consensus        27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~   55 (246)
T cd03237          27 VIGILGPNGIGKTTFIKMLAGVLKPDEGD   55 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence            99999999999999999999976344443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.54  E-value=6.8e-05  Score=61.17  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=25.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++  +++|+|+||+|||||++.+.+......+
T Consensus        25 ~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         25 PSA--ITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             CCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            345  9999999999999999999997533333

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.54  E-value=1.8e-05  Score=65.97  Aligned_cols=28  Identities=36%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+..
T Consensus        23 i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGE--ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            34456  99999999999999999999865

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.53  E-value=6.3e-05  Score=62.77  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|+||+|||||++.|++-.
T Consensus        28 ~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         28 GVELVVKRGE--TIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             ccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence            3333344556  99999999999999999999875

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.53  E-value=2.1e-05  Score=66.15  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+.
T Consensus        16 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        16 LKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence            334444445566  9999999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.53  E-value=6.4e-05  Score=60.63  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +..++  +++|+|+||+|||||++.+..
T Consensus        18 i~~G~--~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNV--LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhh
Confidence            34455  999999999999999999964

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.53  E-value=1.9e-05  Score=65.65  Aligned_cols=41  Identities=39%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ||.-..+..+...+..++  +++++|+||+|||||++.|++-.
T Consensus        13 YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~   53 (237)
T COG0410          13 YGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLV   53 (237)
T ss_pred             ccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            444444444545555667  99999999999999999999976

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.53  E-value=2.4e-05  Score=67.25  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        17 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (271)
T PRK13638         17 LKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKG   56 (271)
T ss_pred             ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence            333333344556  9999999999999999999986533333

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.52  E-value=2.3e-05  Score=75.33  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=33.9

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|.+...+..+.
T Consensus        11 ~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~   57 (638)
T PRK10636         11 RGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGS   57 (638)
T ss_pred             eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            444344455555555667  99999999999999999999975344443

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.52  E-value=1.8e-05  Score=64.72  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        23 LNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            44456  9999999999999999999997533333

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.52  E-value=2.4e-05  Score=66.17  Aligned_cols=35  Identities=34%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        19 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         19 LHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             eccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            333434444566  99999999999999999999875

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=2.5e-05  Score=65.80  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|++|+|||||++.|++..
T Consensus        20 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         20 DITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3333344556  99999999999999999999875

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.51  E-value=6.7e-05  Score=62.28  Aligned_cols=34  Identities=32%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        26 ~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          26 SVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             EEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            344556  9999999999999999999987533333

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00235 udk uridine kinase

Probab=97.51  E-value=7.5e-05  Score=61.57  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.|++..
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4599999999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.51  E-value=3.9e-05  Score=63.53  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        27 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          27 TVKPGE--VTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence            344456  99999999999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.50  E-value=0.00024  Score=67.19  Aligned_cols=46  Identities=28%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|++...+..+
T Consensus       332 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G  377 (552)
T TIGR03719       332 FGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSG  377 (552)
T ss_pred             ECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence            333334555544555566  9999999999999999999987533334

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.50  E-value=7.5e-05  Score=61.15  Aligned_cols=32  Identities=34%  Similarity=0.431  Sum_probs=26.1

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+.+++  +++|+|++|+|||||++.|.+..
T Consensus        20 ~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         20 ISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             eeEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            333344556  99999999999999999999875

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.50  E-value=2.5e-05  Score=67.08  Aligned_cols=33  Identities=33%  Similarity=0.425  Sum_probs=26.4

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        42 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          42 DVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            3333344456  99999999999999999999876

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.50  E-value=7.5e-05  Score=61.58  Aligned_cols=28  Identities=36%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+..
T Consensus        24 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          24 ISAGE--FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            34455  99999999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.49  E-value=8.6e-05  Score=61.18  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|.|++|+|||||++.|+...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45699999999999999999998764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.49  E-value=2.5e-05  Score=65.88  Aligned_cols=34  Identities=32%  Similarity=0.449  Sum_probs=26.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        25 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   58 (241)
T PRK14250         25 KFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEG   58 (241)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            344456  9999999999999999999987533333

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.49  E-value=9e-05  Score=62.03  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+...+..++  +++|+|+||+|||||++.+.+......+
T Consensus        23 ~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          23 DVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             cceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3333344556  9999999999999999999987633333

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.48  E-value=8.2e-05  Score=62.49  Aligned_cols=28  Identities=29%  Similarity=0.551  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGE--FVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence            44456  99999999999999999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.48  E-value=8.3e-05  Score=62.30  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=23.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++|+|+||+|||||++.+.+-..+..+
T Consensus        13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   40 (230)
T TIGR01184        13 FISLIGHSGCGKSTLLNLISGLAQPTSG   40 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999987633334

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.48  E-value=3.2e-05  Score=63.48  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+..++  +++|+|+||+|||||++.|.+..
T Consensus        19 isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          19 LSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             ceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            333344556  99999999999999999999875

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.48  E-value=8.3e-05  Score=59.51  Aligned_cols=28  Identities=43%  Similarity=0.587  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.+.+..
T Consensus        23 i~~Ge--~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          23 VEKGE--IYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34455  99999999999999999999875

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.48  E-value=2.8e-05  Score=67.96  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        19 ~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        19 VVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3444444455566  99999999999999999999865

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.47  E-value=3.4e-05  Score=65.37  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        19 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         19 LDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            344444455566  99999999999999999999865

>PRK06696 uridine kinase; Validated

Probab=97.46  E-value=0.0002  Score=59.81  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=32.9

Q ss_pred             cHHHHHHHHHHhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLE---GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...++.|.+.+.   .+...+|+|.|..|+||||||+.|....
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI   46 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455666666664   3577899999999999999999999876

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.46  E-value=8.5e-05  Score=61.08  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+..
T Consensus        23 i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          23 VKKGE--IYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence            33455  99999999999999999999865

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.46  E-value=3.4e-05  Score=65.29  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        17 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        17 LKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             ecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            334444445566  99999999999999999999865

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=2.2e-05  Score=67.34  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+-
T Consensus        36 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         36 AVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             eeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhc
Confidence            3444444445566  9999999999999999999874

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.45  E-value=3.2e-05  Score=65.95  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+......+
T Consensus        18 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G   57 (258)
T PRK13548         18 LDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSG   57 (258)
T ss_pred             eeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            333333444566  9999999999999999999997533333

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=3.4e-05  Score=65.45  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        19 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         19 VIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            3444444455566  99999999999999999999865

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.0001  Score=61.85  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus        32 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         32 IGEGE--MMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence            34456  99999999999999999999875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.002  Score=60.25  Aligned_cols=25  Identities=36%  Similarity=0.708  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+||||++..+....
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999887754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.45  E-value=7.1e-05  Score=63.91  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      .++++. .+..++  +++|+|+||+|||||++.|++-..+..+.
T Consensus        16 ~l~~i~-~i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~   56 (255)
T cd03236          16 KLHRLP-VPREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGK   56 (255)
T ss_pred             hhhcCC-CCCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence            344443 344566  99999999999999999999977444443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.44  E-value=2.9e-05  Score=66.14  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         20 VEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             eeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence            333333344566  99999999999999999999865

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.44  E-value=0.00011  Score=58.58  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +..++  +++|+|++|+|||||++.+.+......+.
T Consensus        24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (166)
T cd03223          24 IKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGR   57 (166)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            33455  99999999999999999999976344443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.44  E-value=0.00021  Score=59.88  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=24.6

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+|+|.|++|+|||||++.+.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999999876

>TIGR00763 lon ATP-dependent protease La

Probab=97.44  E-value=0.0014  Score=64.53  Aligned_cols=46  Identities=30%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             CcceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..      ....++.++|++|+||||||+.|.+..
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l  371 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL  371 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999888888876531      133489999999999999999999876

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.44  E-value=0.0002  Score=61.42  Aligned_cols=46  Identities=33%  Similarity=0.465  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++++.-.+.     ++.+.-|-++||+|+||||||..|.++.
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em   76 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL   76 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence            467999999988866664     3456689999999999999999999987

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.44  E-value=2.6e-05  Score=66.35  Aligned_cols=40  Identities=28%  Similarity=0.349  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+......+
T Consensus        17 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G   56 (256)
T TIGR03873        17 VDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAG   56 (256)
T ss_pred             EeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            333333444566  9999999999999999999987533334

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.44  E-value=4.3e-05  Score=64.93  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        22 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         22 ALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             eecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            3444544555667  99999999999999999999865

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.44  E-value=3.5e-05  Score=67.50  Aligned_cols=46  Identities=24%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|.+-..+..+
T Consensus        17 ~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G   62 (306)
T PRK13537         17 YGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAG   62 (306)
T ss_pred             ECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            443334455555555666  9999999999999999999987633333

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.44  E-value=9e-05  Score=61.08  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.+++..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999999865

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.43  E-value=2.8e-05  Score=67.70  Aligned_cols=45  Identities=33%  Similarity=0.366  Sum_probs=34.4

Q ss_pred             ccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124          164 TVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE  210 (238)
Q Consensus       164 ~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~  210 (238)
                      +.+| ....++++...+..++  +++++|+||+|||||++.+.+...+
T Consensus        12 k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p   57 (293)
T COG1131          12 KKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKP   57 (293)
T ss_pred             EEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCC
Confidence            3355 3455666666666666  9999999999999999999997633

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.43  E-value=0.00011  Score=61.89  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus        24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          24 IAKGE--FLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            34456  99999999999999999999875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.43  E-value=0.0001  Score=58.48  Aligned_cols=28  Identities=25%  Similarity=0.519  Sum_probs=24.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.+.+..
T Consensus        23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          23 VRRGE--VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EeCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            44556  99999999999999999999876

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.43  E-value=0.00011  Score=60.53  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=26.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        20 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          20 TFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            344556  9999999999999999999987633333

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.43  E-value=3.1e-05  Score=66.33  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        26 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         26 LLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence            3444444455566  99999999999999999999875

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.43  E-value=0.00015  Score=63.99  Aligned_cols=46  Identities=37%  Similarity=0.499  Sum_probs=38.1

Q ss_pred             CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|++...+.+..++.     ......+-|+|+.|+||||||+.+.+..
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l   75 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM   75 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence            467999999988877664     2345578899999999999999999976

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.43  E-value=5.7e-05  Score=63.59  Aligned_cols=29  Identities=34%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -+..++  +++|+|+||+|||||++.|.+..
T Consensus        23 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         23 NIDQGE--VVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344556  99999999999999999999875

>PLN03025 replication factor C subunit; Provisional

Probab=97.42  E-value=0.00049  Score=60.56  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.++..+.|..++..+...-+-++|+.|+||||+|+.+.+..
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4668998888888888877766667799999999999999998875

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.42  E-value=4.3e-05  Score=63.79  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++..-+..++  +++|+|+||+|||||++.+.+..
T Consensus        37 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          37 ALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3334433444556  99999999999999999999865

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.42  E-value=0.00012  Score=60.93  Aligned_cols=28  Identities=32%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        25 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         25 MRPGE--MAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34556  99999999999999999999876

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.42  E-value=9.7e-05  Score=62.86  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++  +++|+|+||+|||||++.|++...+..+
T Consensus        28 ~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G   59 (251)
T PRK09544         28 KPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEG   59 (251)
T ss_pred             cCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3455  9999999999999999999987533344

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.42  E-value=0.00012  Score=60.26  Aligned_cols=29  Identities=38%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        24 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         24 TLAAGE--ALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            334456  99999999999999999999975

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.42  E-value=0.00013  Score=60.79  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=27.1

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  +++|+|+||+|||||++.|++..
T Consensus        25 ~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        25 KNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             ecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33333344566  99999999999999999999875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.42  E-value=0.00013  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+..
T Consensus        26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGE--SLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            3455  99999999999999999999875

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.41  E-value=3.7e-05  Score=65.60  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++..-+..++  +++|+|+||+|||||++.|.+..
T Consensus        29 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         29 LKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            444444445566  99999999999999999999864

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.41  E-value=0.00011  Score=61.41  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251          25 IPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            34456  9999999999999999999987633444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.41  E-value=0.00012  Score=58.38  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|++......+
T Consensus        25 i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G   57 (171)
T cd03228          25 IKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSG   57 (171)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            34456  9999999999999999999997633333

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.41  E-value=0.00012  Score=58.75  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++  +++|+|++|+|||||++.+.+......+
T Consensus        26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          26 KQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            3455  9999999999999999999997633333

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.41  E-value=8.2e-05  Score=59.66  Aligned_cols=50  Identities=26%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             CCcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          162 EPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+++||-..-+.++.+-|..++  |.+|||..|+|||||++.|.....+..+
T Consensus        12 lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G   61 (258)
T COG4107          12 LSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAG   61 (258)
T ss_pred             hhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence            4566777777888888888888  9999999999999999999987644333

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.41  E-value=0.00012  Score=62.46  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=28.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++...+..++  +++|+|+||+|||||++.+++...+..+
T Consensus        24 ~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   61 (258)
T PRK11701         24 DVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAG   61 (258)
T ss_pred             eeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            3333344566  9999999999999999999997633334

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.40  E-value=0.002  Score=63.32  Aligned_cols=47  Identities=28%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             CCcceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          162 EPTVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+.+|.+..++.|+.+|.-      ....++.++|++|+|||||++.+.+..
T Consensus       321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l  373 (784)
T PRK10787        321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT  373 (784)
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            44579999999999887752      234589999999999999999999865

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.40  E-value=0.00011  Score=60.63  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=26.0

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++  +++|+|++|+|||||++.|++...+..+
T Consensus        22 ~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        22 ADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             eCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3456  9999999999999999999997633333

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.40  E-value=0.00012  Score=59.07  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          23 VRAGE--IVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34455  99999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.40  E-value=0.00011  Score=60.69  Aligned_cols=24  Identities=38%  Similarity=0.670  Sum_probs=22.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|+||+|||||++.+.+..
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            599999999999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.40  E-value=0.00012  Score=57.05  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=25.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..++  +++|+|++|+|||||++.+.+......+
T Consensus        24 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (144)
T cd03221          24 NPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEG   55 (144)
T ss_pred             CCCC--EEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence            3455  9999999999999999999987633334

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.40  E-value=0.00013  Score=61.32  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        26 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G   58 (238)
T cd03249          26 IPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSG   58 (238)
T ss_pred             ecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence            34456  9999999999999999999997633444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.40  E-value=3.6e-05  Score=65.37  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +.+..-+..++  +++|+|+||+|||||++.|++..++..+
T Consensus        22 ~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300         22 NNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             EeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            33333344555  9999999999999999999987533333

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=2.4e-05  Score=67.38  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|++-.
T Consensus        35 ~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         35 ALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            3444444445566  99999999999999999999753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.39  E-value=4.1e-05  Score=64.89  Aligned_cols=33  Identities=36%  Similarity=0.408  Sum_probs=25.8

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +++...+..++  +++|+|+||+|||||++.|.+-
T Consensus        22 ~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         22 NSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence            33333344556  9999999999999999999874

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.39  E-value=5.4e-05  Score=64.93  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        29 l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   68 (267)
T PRK15112         29 VKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSG   68 (267)
T ss_pred             eeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            344444445566  9999999999999999999987633333

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.39  E-value=0.00012  Score=61.32  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=22.1

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.|++..
T Consensus        14 ~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        14 VLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            99999999999999999999976

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.39  E-value=0.00013  Score=62.66  Aligned_cols=28  Identities=36%  Similarity=0.584  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         30 VPRGK--ITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34455  99999999999999999999875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.39  E-value=4.3e-05  Score=67.87  Aligned_cols=48  Identities=27%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +.||....++++..-+..++  .+++.||+|||||||++.|.+=..+..+
T Consensus        13 k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G   60 (352)
T COG3842          13 KSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSG   60 (352)
T ss_pred             eecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34564445555655566677  9999999999999999999986533333

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.39  E-value=0.0007  Score=58.99  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+....+-++|+.|+||||+++.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999988766678999999999999999999876

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.38  E-value=0.00014  Score=61.30  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=26.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 ~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         20 EDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33333344556  99999999999999999999975

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.38  E-value=4.9e-05  Score=65.06  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|++..
T Consensus        22 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         22 VAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             EeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence            3444444455566  99999999999999999999976

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.00011  Score=63.33  Aligned_cols=28  Identities=29%  Similarity=0.490  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++-.
T Consensus        30 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         30 IEDGS--YTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999865

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.38  E-value=3.8e-05  Score=73.80  Aligned_cols=41  Identities=29%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        18 il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G   58 (635)
T PRK11147         18 LLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDG   58 (635)
T ss_pred             eEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence            4444444455566  9999999999999999999997533333

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.38  E-value=3.6e-05  Score=68.45  Aligned_cols=46  Identities=20%  Similarity=0.202  Sum_probs=32.8

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +|....++++..-+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        51 y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G   96 (340)
T PRK13536         51 YGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAG   96 (340)
T ss_pred             ECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence            443334445544455566  9999999999999999999997633333

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.38  E-value=4.1e-05  Score=65.99  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        17 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         17 LRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             EecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            333433444556  99999999999999999999875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.38  E-value=4.4e-05  Score=64.67  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        19 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         19 VKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             EeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            333434445566  99999999999999999999754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=4.1e-05  Score=64.34  Aligned_cols=35  Identities=37%  Similarity=0.435  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        21 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         21 LHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence            333333444566  99999999999999999999875

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.37  E-value=2.6e-05  Score=67.02  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++..-+..++  +++|+|+||+|||||++.|.+..
T Consensus        29 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         29 VKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            444444445566  99999999999999999999864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.37  E-value=4.7e-05  Score=64.34  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +...+..++  +++|+|+||+|||||++.|.+.
T Consensus        20 isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         20 LNLEVRPGE--VHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             ceeEEcCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence            333344556  9999999999999999999997

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.37  E-value=4.3e-05  Score=64.97  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         20 DLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             eeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence            3333344556  99999999999999999999865

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.37  E-value=6.8e-05  Score=62.96  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124          165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE  210 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~  210 (238)
                      .++.+..+.+|...+..++  .-.|+|+||+|||||++.+..+..+
T Consensus        40 ~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~p   83 (257)
T COG1119          40 RRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPP   83 (257)
T ss_pred             EECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCC
Confidence            3556667777777777777  8999999999999999999988744

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.37  E-value=6.2e-05  Score=63.84  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=27.2

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  +++|+|+||+|||||++.+.+..
T Consensus        20 ~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        20 RDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             ecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33434444566  99999999999999999999875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.37  E-value=5e-05  Score=65.00  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        25 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         25 AVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             EeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence            3444444455566  99999999999999999999743

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.37  E-value=4.3e-05  Score=64.86  Aligned_cols=29  Identities=31%  Similarity=0.498  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         26 DFPENS--VTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            344556  99999999999999999999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.36  E-value=8.2e-05  Score=64.40  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC--CCEEEEEEeCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN--FNYVIWVVMSK  225 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~--Fd~~~wV~vs~  225 (238)
                      ++..-+.+++  .+++.|++|+|||||++.|.+-..+..+.  |+...|..+++
T Consensus        20 di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~   71 (345)
T COG1118          20 DISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN   71 (345)
T ss_pred             cceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence            3444445666  99999999999999999999976455554  77788887766

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.00012  Score=61.42  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  ++||+|..|+|||||++.+.+-.
T Consensus        22 ~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          22 ALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             hhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhccc
Confidence            4444444445567  99999999999999999998754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.36  E-value=3.1e-05  Score=66.54  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=26.6

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        41 ~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         41 KNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            33333344456  99999999999999999999865

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.36  E-value=5.4e-05  Score=64.11  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=26.0

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++..-+..++  +++|+|+||+|||||++.|.+-.
T Consensus        21 ~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         21 KINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             cceEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            3333344566  99999999999999999999753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.36  E-value=0.00017  Score=58.05  Aligned_cols=28  Identities=39%  Similarity=0.700  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.+++..
T Consensus        22 i~~G~--~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          22 IEAGE--IVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33455  99999999999999999999975

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.36  E-value=0.00015  Score=62.87  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|++|+|||||++.|.+...+..+
T Consensus        33 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   66 (289)
T PRK13645         33 TFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETG   66 (289)
T ss_pred             EEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            344556  9999999999999999999987633333

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00014  Score=62.53  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        30 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   62 (272)
T PRK15056         30 VPGGS--IAALVGVNGSGKSTLFKALMGFVRLASG   62 (272)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34455  9999999999999999999987533334

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00014  Score=60.84  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   54 (232)
T PRK10771         22 VERGE--RVAILGPSGAGKSTLLNLIAGFLTPASG   54 (232)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34456  9999999999999999999987533333

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.35  E-value=0.00014  Score=61.61  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        23 VAAGE--KVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            44556  99999999999999999999875

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.35  E-value=0.00016  Score=60.62  Aligned_cols=28  Identities=32%  Similarity=0.584  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+..
T Consensus        25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          25 IKPGE--VVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCc
Confidence            34456  99999999999999999999875

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.35  E-value=0.00017  Score=59.76  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=26.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|++|+|||||++.|.+...+..+
T Consensus        26 ~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G   59 (220)
T cd03245          26 TIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSG   59 (220)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            344556  9999999999999999999987533333

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00014  Score=63.12  Aligned_cols=38  Identities=37%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++...+..++  +++|+|+||+|||||++.|++...+..+
T Consensus        25 ~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G   62 (287)
T PRK13641         25 NISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSG   62 (287)
T ss_pred             eeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3333344566  9999999999999999999987633334

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00014  Score=62.74  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=26.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|++-..+..+
T Consensus        30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (279)
T PRK13650         30 VKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESG   62 (279)
T ss_pred             EeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            34456  9999999999999999999987533444

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.34  E-value=0.00014  Score=59.17  Aligned_cols=27  Identities=33%  Similarity=0.585  Sum_probs=23.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..++  +++|+|+||+|||||++.+.+.
T Consensus        30 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          30 VKPGT--LTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EeCCc--EEEEECCCCCCHHHHHHHHhCC
Confidence            33455  9999999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.34  E-value=7.3e-05  Score=69.56  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.+++..
T Consensus        18 il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~   53 (490)
T PRK10938         18 TLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGEL   53 (490)
T ss_pred             ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            3444444455566  99999999999999999999875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=4.6e-05  Score=71.63  Aligned_cols=40  Identities=28%  Similarity=0.430  Sum_probs=29.6

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++...+..++  +++|+|+||+|||||++.|++...+..+.
T Consensus        18 ~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   57 (530)
T PRK15064         18 ENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGN   57 (530)
T ss_pred             eCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            33333444556  99999999999999999999976344443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.34  E-value=0.00017  Score=60.08  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=28.6

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++...+..++  +++|+|++|+|||||++.+.+......+
T Consensus        20 ~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254          20 KDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             cceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            33333344556  8999999999999999999987633333

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.34  E-value=0.00016  Score=62.01  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        47 i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G   79 (264)
T PRK13546         47 AYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVG   79 (264)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            33455  9999999999999999999997633333

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.34  E-value=0.00018  Score=60.26  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|.+......+
T Consensus        24 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   56 (236)
T cd03253          24 IPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSG   56 (236)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            34455  9999999999999999999987633344

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.34  E-value=0.00037  Score=57.79  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=33.8

Q ss_pred             cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++.+..++.......|-|+|+.|+||||||+.+++..
T Consensus        22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45577777777655556689999999999999999999876

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.33  E-value=0.00016  Score=60.86  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.+.+..
T Consensus        24 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        24 YVDPGE--LRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344556  99999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.33  E-value=0.00019  Score=59.50  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|++..
T Consensus        24 i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          24 IPTGQ--LTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            34455  99999999999999999999875

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.33  E-value=0.00026  Score=61.56  Aligned_cols=27  Identities=22%  Similarity=0.243  Sum_probs=23.0

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.+|||.|++|+|||||++.+.+-.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999886544

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.33  E-value=0.00017  Score=59.83  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|++|+|||||++.+.+...+..+
T Consensus        20 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   59 (221)
T cd03244          20 LKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSG   59 (221)
T ss_pred             ccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            334444445566  9999999999999999999987533333

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.33  E-value=0.0003  Score=61.86  Aligned_cols=46  Identities=17%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+..++..+....+-++|+.|+||||||+.+.+..
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999888765668899999999999999998866

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.33  E-value=0.00015  Score=61.71  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|++|+|||||++.|.+...+..+
T Consensus        27 ~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G   60 (257)
T PRK10619         27 QANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEG   60 (257)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            344456  9999999999999999999997633333

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.33  E-value=0.00028  Score=58.66  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (223)
T TIGR03740        23 VPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSG   55 (223)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34456  9999999999999999999987533333

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.32  E-value=0.00017  Score=60.11  Aligned_cols=28  Identities=39%  Similarity=0.539  Sum_probs=23.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++|+|++|+|||||++.+.+......+
T Consensus         8 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G   35 (223)
T TIGR03771         8 LLGLLGPNGAGKTTLLRAILGLIPPAKG   35 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999987533333

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00017  Score=62.06  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=27.1

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|++...+..+
T Consensus        24 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (274)
T PRK13644         24 VIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKG   57 (274)
T ss_pred             EEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            344566  9999999999999999999997633333

>PRK06547 hypothetical protein; Provisional

Probab=97.32  E-value=0.00033  Score=56.26  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+..+...+|+|.|+.|+|||||++.+....
T Consensus         6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547          6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444556778899999999999999999998764

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00015  Score=62.39  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|++-.....+
T Consensus        25 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (275)
T PRK13639         25 AEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSG   57 (275)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            44566  9999999999999999999987533333

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00017  Score=62.62  Aligned_cols=33  Identities=36%  Similarity=0.624  Sum_probs=26.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+++-..+..+
T Consensus        30 i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G   62 (287)
T PRK13637         30 IEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSG   62 (287)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence            44556  9999999999999999999987633334

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.32  E-value=6.2e-05  Score=63.70  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+...+..++  +++|+|+||+|||||++.|.+..
T Consensus        19 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         19 LKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             eecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            344444445566  99999999999999999999865

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.32  E-value=5.5e-05  Score=64.11  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         26 DFEEKE--LTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence            344556  99999999999999999999865

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00017  Score=61.47  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=24.0

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        35 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         35 IPENE--VTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            33456  99999999999999999999854

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.32  E-value=0.00017  Score=60.04  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..+...+..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        30 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   69 (226)
T cd03248          30 LQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGG   69 (226)
T ss_pred             ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence            333333344556  9999999999999999999987533333

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.32  E-value=5.3e-05  Score=64.67  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         20 LHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             EecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence            444444445566  99999999999999999999876

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.32  E-value=7e-05  Score=62.47  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          23 LNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             ccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCcc
Confidence            333333344555  99999999999999999999876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.31  E-value=5.5e-05  Score=64.11  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+.
T Consensus        23 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         23 LKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCC
Confidence            444444445566  9999999999999999999984

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00017  Score=61.11  Aligned_cols=28  Identities=36%  Similarity=0.559  Sum_probs=23.6

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+..++  +++|+|+||+|||||++.|.+-
T Consensus        25 ~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         25 EIEEKS--VVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EEeCCC--EEEEECCCCCCHHHHHHHHhhh
Confidence            344556  9999999999999999999863

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00028  Score=60.50  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=25.0

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+..
T Consensus        31 ~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         31 NIPKGQ--WTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            344556  99999999999999999999875

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00016  Score=62.27  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++...+..++  +++|+|+||+|||||++.+.+-..+..+
T Consensus        23 ~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (274)
T PRK13647         23 GLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRG   60 (274)
T ss_pred             eEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            3333344566  9999999999999999999987533333

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.31  E-value=0.00015  Score=59.52  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+..
T Consensus        30 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          30 VKPGE--MVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             ECCCc--EEEEECCCCCCHHHHHHHhcccC
Confidence            34455  99999999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00016  Score=62.47  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus        30 i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         30 IPRGS--WTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhccc
Confidence            34456  99999999999999999999875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.31  E-value=5.6e-05  Score=71.50  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+...+..+.
T Consensus        22 il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~   63 (556)
T PRK11819         22 ILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGE   63 (556)
T ss_pred             eeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3444444455566  99999999999999999999976344443

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=6e-05  Score=63.87  Aligned_cols=35  Identities=31%  Similarity=0.421  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         20 VKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             eccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            444444445566  99999999999999999999864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.00017  Score=63.82  Aligned_cols=35  Identities=37%  Similarity=0.388  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+...+.+++  .++++||+|||||||++.|.+-.
T Consensus        19 l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          19 LKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455566  99999999999999999999865

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.29  E-value=0.00029  Score=61.54  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.+.+...+..+
T Consensus        25 i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G   57 (301)
T TIGR03522        25 AQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSG   57 (301)
T ss_pred             EeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34455  9999999999999999999987533333

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.29  E-value=0.00019  Score=62.07  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|++...+..+
T Consensus        29 ~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G   62 (279)
T PRK13635         29 SVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAG   62 (279)
T ss_pred             EEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            344556  9999999999999999999987633444

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.28  E-value=5.8e-05  Score=64.09  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+-
T Consensus        22 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         22 LYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             eeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence            333333344556  9999999999999999999864

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.28  E-value=0.00031  Score=65.97  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=39.5

Q ss_pred             cceecHHHHHHHHHHhc------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|.++.++.++..|.      +...+++.++||.|+||||||+.|.+-.
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            46999999999999883      3456799999999999999999999866

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.28  E-value=0.0002  Score=61.48  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...+..++  +++|+|++|+|||||++.|++..
T Consensus        26 ~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         26 KNVSFEINEGE--YVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            33333344556  99999999999999999999876

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.28  E-value=6.1e-05  Score=63.85  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=23.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+..++  +++|+|+||+|||||++.|.+-
T Consensus        27 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         27 DFNQNE--ITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhcc
Confidence            344556  9999999999999999999874

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.28  E-value=5.8e-05  Score=64.35  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+-.
T Consensus        29 ~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         29 DIYRNK--VTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            344456  99999999999999999999865

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.00015  Score=59.95  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCC--CCCCEEEEEE----eCCCCCHHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP--TNFNYVIWVV----MSKDSRLENIQETI  236 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~--~~Fd~~~wV~----vs~~~~~~~i~~~I  236 (238)
                      ...||....++++.--+..+.  |.+++||.|||||||++.+..-. +.-  -..+-.++..    .+...|+.++-+.|
T Consensus        14 ~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v   90 (253)
T COG1117          14 NLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV   90 (253)
T ss_pred             eEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence            345787777777766666666  99999999999999999987533 111  1233444442    33455666665544

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.28  E-value=0.00021  Score=61.89  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      -+..++  +++|+|+||+|||||++.|++......+
T Consensus        29 ~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G   62 (286)
T PRK13646         29 EFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTG   62 (286)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            344556  9999999999999999999987633334

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.28  E-value=0.0002  Score=61.44  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.+++..
T Consensus        36 l~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         36 IKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            333333344556  99999999999999999999865

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.28  E-value=0.0002  Score=61.40  Aligned_cols=29  Identities=24%  Similarity=0.435  Sum_probs=24.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        41 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         41 DIPEKT--VTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            344556  99999999999999999999865

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.28  E-value=0.0002  Score=61.78  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        27 i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   59 (277)
T PRK13652         27 APRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSG   59 (277)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            34456  9999999999999999999987533334

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.27  E-value=0.00045  Score=62.87  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      --||+|+|+||+||||+++.+.+...+..+.
T Consensus       367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             ceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            3499999999999999999999877455554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.27  E-value=7.1e-05  Score=61.36  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++++...+..++  +++|+|++|+|||||++.+.+.
T Consensus        16 l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          16 LKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             eeccceEECCCc--EEEEECCCCCCHHHHHHHHhCC
Confidence            334444445566  9999999999999999999986

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.27  E-value=0.00043  Score=56.09  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-+...+..+.  .+.|+|++|+|||||++.+.+..
T Consensus        15 ~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          15 AAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            333444444555  89999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.27  E-value=0.00021  Score=61.18  Aligned_cols=35  Identities=34%  Similarity=0.402  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        27 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        27 LTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             eeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445566  99999999999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.27  E-value=5.6e-05  Score=63.92  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        20 ~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         20 DINMQIEQNK--ITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            3333344556  99999999999999999999854

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.27  E-value=7.1e-05  Score=63.45  Aligned_cols=29  Identities=31%  Similarity=0.425  Sum_probs=24.7

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|.+..
T Consensus        26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         26 PIYENK--ITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            344556  99999999999999999999854

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.00016  Score=59.25  Aligned_cols=41  Identities=34%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++.....+++  +.||.|+||.||||+++.|+.-..+..+
T Consensus        17 AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G   57 (245)
T COG4555          17 AVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSG   57 (245)
T ss_pred             hhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCc
Confidence            3444444444556  9999999999999999999987644433

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=9.9e-05  Score=59.69  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..+...+..++  .+-|.|+||+|||||++.|.+-.++..+
T Consensus        17 lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G   57 (209)
T COG4133          17 LFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAG   57 (209)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCC
Confidence            3444555555667  8999999999999999999987644433

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.26  E-value=0.00022  Score=53.22  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.|+|++|+|||||++.+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            479999999999999999999876

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.26  E-value=0.0029  Score=61.47  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++++.--+..++  +|+|+|.+|+|||||+|++.+-.
T Consensus       487 ~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         487 PVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             chhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            35555555566677  99999999999999999998865

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.26  E-value=7e-05  Score=70.21  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++..
T Consensus        16 l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        16 LKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence            344444445566  99999999999999999999963

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.26  E-value=6.3e-05  Score=64.88  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++....++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        31 ~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~   71 (276)
T PRK14271         31 FAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMN   71 (276)
T ss_pred             ECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence            443334455555555667  99999999999999999999865

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.25  E-value=0.0002  Score=63.70  Aligned_cols=28  Identities=36%  Similarity=0.535  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.+.+-.
T Consensus        28 i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~   55 (343)
T PRK11153         28 IPAGE--IFGVIGASGAGKSTLIRCINLLE   55 (343)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.25  E-value=0.0018  Score=59.73  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+..+...|..++  .++|+||.|+|||||+|.+.+--
T Consensus       350 pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w  386 (580)
T COG4618         350 PILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIW  386 (580)
T ss_pred             cceecceeEecCCc--eEEEECCCCccHHHHHHHHHccc
Confidence            45666777777788  99999999999999999998754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.25  E-value=0.00023  Score=62.41  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++...+..++  +++|+|+||+|||||++.|++-..+..+
T Consensus        25 ~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G   62 (305)
T PRK13651         25 NVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTG   62 (305)
T ss_pred             eeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3333344566  9999999999999999999987633333

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.25  E-value=7.2e-05  Score=63.90  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        23 l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258         23 LEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             eeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence            344444445566  99999999999999999999876

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.25  E-value=7.1e-05  Score=69.87  Aligned_cols=40  Identities=18%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.+++...+..+
T Consensus        20 l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G   59 (501)
T PRK10762         20 LSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAG   59 (501)
T ss_pred             eeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            344444444556  9999999999999999999987533333

>PRK13409 putative ATPase RIL; Provisional

Probab=97.25  E-value=0.00024  Score=67.71  Aligned_cols=47  Identities=19%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             eecH-HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC
Q 046124          166 VGLQ-LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF  215 (238)
Q Consensus       166 vG~~-~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F  215 (238)
                      ||.. -.+..+- .+..++  +++|+|+||+|||||++.+.+...+..+.+
T Consensus        83 yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i  130 (590)
T PRK13409         83 YGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDY  130 (590)
T ss_pred             ecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence            5532 1344443 345566  999999999999999999999764445553

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.24  E-value=0.00022  Score=62.01  Aligned_cols=33  Identities=33%  Similarity=0.532  Sum_probs=26.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|++...+..+
T Consensus        30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (290)
T PRK13634         30 IPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSG   62 (290)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            34556  9999999999999999999987633333

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=97.24  E-value=9.7e-05  Score=61.93  Aligned_cols=40  Identities=30%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++.+...+..++  +++|+|++|+|||||++.+.+......+
T Consensus        16 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G   55 (232)
T cd03300          16 LDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSG   55 (232)
T ss_pred             eccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            333333444556  9999999999999999999997633333

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.24  E-value=8.2e-05  Score=69.91  Aligned_cols=46  Identities=24%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +|....++++...+..++  +++|+|+||+|||||++.|++...+..+
T Consensus       329 ~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G  374 (530)
T PRK15064        329 FDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSG  374 (530)
T ss_pred             eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            343334444444445566  9999999999999999999987533334

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.24  E-value=0.00023  Score=59.44  Aligned_cols=29  Identities=31%  Similarity=0.432  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  .++|+||.|+|||||+..+..-.
T Consensus        27 ~i~~Ge--~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          27 EIEAGE--FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            344566  99999999999999999998755

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.24  E-value=0.00027  Score=58.08  Aligned_cols=40  Identities=23%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+......+
T Consensus        24 l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   63 (207)
T cd03369          24 LKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEG   63 (207)
T ss_pred             ccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            333333344556  9999999999999999999986533333

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.23  E-value=0.00025  Score=58.16  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      ++...+..++  +++|+|++|+|||||++.+.+......+.
T Consensus        23 ~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~   61 (204)
T cd03250          23 DINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGS   61 (204)
T ss_pred             eeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCe
Confidence            3333344566  99999999999999999999976344443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.23  E-value=0.00025  Score=59.66  Aligned_cols=28  Identities=39%  Similarity=0.477  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+..
T Consensus        23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        23 VPTGS--LVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            34456  99999999999999999999875

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.23  E-value=0.00025  Score=61.51  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|++|+|||||++.|++...+..+
T Consensus        29 i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G   61 (288)
T PRK13643         29 VKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEG   61 (288)
T ss_pred             EcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            34556  9999999999999999999987633333

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.23  E-value=6.8e-05  Score=63.92  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        28 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         28 LKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            333333344556  99999999999999999999854

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.23  E-value=0.00023  Score=60.52  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        26 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         26 LQRGR--VLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.22  E-value=0.00024  Score=61.63  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+.
T Consensus        55 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         55 VKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcc
Confidence            333433444556  9999999999999999999984

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.22  E-value=4.7e-05  Score=65.15  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        31 vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         31 ALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence            3444444445566  99999999999999999999864

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.21  E-value=0.0001  Score=69.73  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      .++++...+..++  +++|+|+||+|||||++.|++...+..+.
T Consensus        20 il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~   61 (552)
T TIGR03719        20 ILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGE   61 (552)
T ss_pred             eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3444444455566  99999999999999999999976344443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.21  E-value=0.00024  Score=61.49  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++-..+..+
T Consensus        22 l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G   61 (283)
T PRK13636         22 LKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSG   61 (283)
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence            334444445566  9999999999999999999987633334

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.21  E-value=0.00025  Score=60.90  Aligned_cols=39  Identities=28%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++...+..++  +++|+|+||+|||||++.|++......+
T Consensus        29 ~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG   67 (268)
T PRK10419         29 NNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQG   67 (268)
T ss_pred             eceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            33334444566  9999999999999999999987533333

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.21  E-value=5.8e-05  Score=66.05  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+...+..++  +++|+|++|+|||||++.|++..
T Consensus        61 L~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         61 LKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            333333344556  99999999999999999999864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.21  E-value=0.00077  Score=51.81  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...|..+.  +|.+.|.-|+|||||++.+....
T Consensus        13 ~~l~~~l~~~~--~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        13 KAFAKPLDFGT--VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             HHHHHhCCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence            33444454556  99999999999999999999876

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.21  E-value=0.00026  Score=59.95  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+..
T Consensus        27 ~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         27 DIYKRE--VTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            344556  99999999999999999998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.20  E-value=7.7e-05  Score=69.82  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++..
T Consensus        27 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~   61 (510)
T PRK15439         27 LKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIV   61 (510)
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            444444444566  99999999999999999999875

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.20  E-value=0.00029  Score=61.09  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|+||+|||||++.|++...+..+
T Consensus        60 i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G   92 (282)
T cd03291          60 IEKGE--MLAITGSTGSGKTSLLMLILGELEPSEG   92 (282)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34455  9999999999999999999997633444

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.20  E-value=7.9e-05  Score=69.49  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        17 l~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633        17 LDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             ecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445566  99999999999999999999865

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.20  E-value=4.2e-05  Score=65.40  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|....++.+...+..++  +++|+|++|+|||||++.|.+..
T Consensus        18 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         18 YGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             eCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHccc
Confidence            444334445544455566  99999999999999999998765

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.19  E-value=8.1e-05  Score=69.60  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        20 il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~   55 (510)
T PRK09700         20 ALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIH   55 (510)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCc
Confidence            3444444455566  99999999999999999999865

>PLN03073 ABC transporter F family; Provisional

Probab=97.19  E-value=5.8e-05  Score=73.39  Aligned_cols=40  Identities=30%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ||....++++...+..++  +++|+|+||+|||||++.|.+.
T Consensus       187 y~~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        187 VGGRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             eCCCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence            443334444444455566  9999999999999999999974

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.19  E-value=8.4e-05  Score=69.46  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   55 (506)
T PRK13549         20 ALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVY   55 (506)
T ss_pred             eecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3444444455566  99999999999999999999866

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.19  E-value=8.5e-05  Score=63.41  Aligned_cols=41  Identities=29%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|....+.++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         20 INDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             cCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            343334444444455566  99999999999999999999875

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.19  E-value=0.0003  Score=55.26  Aligned_cols=23  Identities=48%  Similarity=0.664  Sum_probs=22.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+..
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            99999999999999999999866

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.0013  Score=60.65  Aligned_cols=163  Identities=14%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             cCccceeecccc------cc-cccchhHH-----hhhhHhhHhhHHHHHHHHHhhhhchHHHH-HHHHHHHHHHHHHHHH
Q 046124           31 LNATFYIYQPEN------TV-RICRNILQ-----ISIDGAIFNRCLDCFLGKAASIRNLQKNV-VALETELGKLIEAKND   97 (238)
Q Consensus        31 ~~~~~~~~~~~~------~~-~~~g~~~~-----~~l~~v~~~~l~~~~~~e~~~~~~~~~~~-~~L~~el~~l~~~l~d   97 (238)
                      |--|+++.|-++      -. .+...++.     ..+|.| |+.|+.+-..++.++.|..+.+ +...+.....+..   
T Consensus       222 LDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V-~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qre---  297 (582)
T KOG0062|consen  222 LDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTV-CTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQRE---  297 (582)
T ss_pred             ecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHH-HHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhh---
Confidence            445777777333      11 22233433     345666 7777777777886665544444 4443333222211   


Q ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHH------HHHHHHHHHHHHh------cC--Ccccccc-cCCCCCCCCCCCC
Q 046124           98 VVARVVNAERQQTMTRLNKVQGWLSRFGKK------VAKKLRDAGTLMA------NG--AFEVVAE-RAPESVADERPIE  162 (238)
Q Consensus        98 ~~~~~~~a~~k~~~~~~~~~~~Wl~~~~~~------~~~~i~~i~~~~~------~~--~~~~~~~-~~~~~~~~~~~~~  162 (238)
                             .+.+.  .....++.++.+|++.      +..+|+.+..+-.      +.  .|.++.. ...+++.......
T Consensus       298 -------fe~q~--~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V  368 (582)
T KOG0062|consen  298 -------FEVQM--KYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV  368 (582)
T ss_pred             -------cchHH--HHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEee
Confidence                   12222  4456788888887643      4444444433211      11  2333331 1111111111000


Q ss_pred             CcceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-++-.+ . .+...+..  +-..+|++||.+|.||||+.|.+.++.
T Consensus       369 ~f~y~p~~-y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l  414 (582)
T KOG0062|consen  369 AFEYTPSE-Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL  414 (582)
T ss_pred             eccCCCcc-h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccC
Confidence            00011111 1 22222222  233589999999999999999999977

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.18  E-value=0.00073  Score=57.74  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             cceecHHHHHHHHH---Hhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWR---CLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~---~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..++.+..   ++.            .....-+-++|++|+||||+|+.+.+..
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            46787766655543   321            1234567899999999999999998754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=97.18  E-value=0.00026  Score=60.03  Aligned_cols=27  Identities=33%  Similarity=0.549  Sum_probs=23.6

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.+.+-.
T Consensus        20 ~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         20 RAGE--ILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence            3455  99999999999999999999865

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.18  E-value=0.00035  Score=53.55  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|-++|++|+|||||++.+....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            57899999999999999998554

...

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.18  E-value=0.00031  Score=61.92  Aligned_cols=41  Identities=29%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  +++|+|++|+|||||++.|++-..+..+
T Consensus        41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G   81 (320)
T PRK13631         41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYG   81 (320)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            3444444445566  9999999999999999999987633333

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.17  E-value=0.00029  Score=62.72  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|++-.
T Consensus        27 ~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~   55 (343)
T TIGR02314        27 HVPAGQ--IYGVIGASGAGKSTLIRCVNLLE   55 (343)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            344456  99999999999999999999876

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.17  E-value=0.00031  Score=62.77  Aligned_cols=27  Identities=33%  Similarity=0.617  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|.+..
T Consensus        21 ~~Ge--i~~l~G~nGsGKSTLl~~iaGl~   47 (354)
T TIGR02142        21 PGQG--VTAIFGRSGSGKTTLIRLIAGLT   47 (354)
T ss_pred             CCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3445  99999999999999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.16  E-value=0.00034  Score=52.29  Aligned_cols=21  Identities=33%  Similarity=0.741  Sum_probs=19.5

Q ss_pred             EEEEecCCCchhHHHHHHHhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~  207 (238)
                      |.|.|+.|+||||+|+.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998876

...

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.16  E-value=0.00031  Score=59.41  Aligned_cols=28  Identities=29%  Similarity=0.511  Sum_probs=23.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus        26 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         26 IPKNS--VTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence            34456  99999999999999999999753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.16  E-value=0.00031  Score=62.72  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+..
T Consensus        23 ~Ge--~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         23 AQG--ITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            455  99999999999999999999875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.15  E-value=0.00015  Score=57.86  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++...+..++  .|+|.||.|+|||||.|.|++-.....+
T Consensus        20 ~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G   58 (223)
T COG4619          20 NNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSG   58 (223)
T ss_pred             cceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence            33334444566  8999999999999999999986533333

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.15  E-value=0.00031  Score=59.01  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|++|+|||||++.+.+......+
T Consensus        22 i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G   54 (235)
T cd03299          22 VERGD--YFVILGPTGSGKSVLLETIAGFIKPDSG   54 (235)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            33455  9999999999999999999987533344

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.15  E-value=0.00015  Score=67.86  Aligned_cols=28  Identities=25%  Similarity=0.391  Sum_probs=24.1

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus       286 i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        286 VCRGE--ILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            33455  99999999999999999999865

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.15  E-value=0.00033  Score=62.98  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        26 i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         26 IHEGE--FVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            34455  99999999999999999999875

>PRK06762 hypothetical protein; Provisional

Probab=97.15  E-value=0.00037  Score=55.12  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +.+|.|.|+.|+||||+|+.+...
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~   25 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQER   25 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998765

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.14  E-value=0.00031  Score=57.33  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+..
T Consensus        25 l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          25 LKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             eecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            334434444556  99999999999999999999865

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.14  E-value=0.00011  Score=62.21  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+..
T Consensus        26 ~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         26 DFPERQ--ITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            344556  99999999999999999999865

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.14  E-value=0.00031  Score=57.63  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +++|+|+||+|||||++.++.-
T Consensus        24 ~~~i~G~nGsGKStll~al~~l   45 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWV   45 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999999854

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.14  E-value=0.00031  Score=58.32  Aligned_cols=21  Identities=19%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .+++|+|+||+|||||.+.|.
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            599999999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.14  E-value=0.00029  Score=59.29  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .+.+|+|+||+|||||++.|+
T Consensus        24 ~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          24 KHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.14  E-value=0.00034  Score=57.53  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.|+||+|||||++.|....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            599999999999999999997543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.13  E-value=0.0001  Score=68.55  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.+++..
T Consensus        14 l~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~   48 (491)
T PRK10982         14 LDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIY   48 (491)
T ss_pred             eeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence            344444445566  99999999999999999999875

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.13  E-value=0.00036  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|+|.|+.|+||||+++.+.+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998863

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.13  E-value=0.00032  Score=62.01  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+-.
T Consensus        23 l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll   57 (326)
T PRK11022         23 VDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLI   57 (326)
T ss_pred             EeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCC
Confidence            333334445566  99999999999999999999865

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.12  E-value=0.00035  Score=60.03  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        40 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         40 ALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             EeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence            3444444445566  99999999999999999998864

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.12  E-value=0.00034  Score=61.93  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|.+-.
T Consensus        23 l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         23 VDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccC
Confidence            333333445566  99999999999999999999865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.12  E-value=0.00015  Score=67.81  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++..
T Consensus       278 l~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~  312 (506)
T PRK13549        278 VDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAY  312 (506)
T ss_pred             ccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCC
Confidence            444444444566  99999999999999999999865

>PF13173 AAA_14: AAA domain

Probab=97.12  E-value=0.00061  Score=51.74  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD  226 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~  226 (238)
                      .++.|.|+-|+|||||++.++.+. .   .....+++.....
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~   40 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDP   40 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCH
Confidence            589999999999999999999876 2   3345666655443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.11  E-value=0.00029  Score=65.57  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|++..
T Consensus       271 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~  298 (491)
T PRK10982        271 LHKGE--ILGIAGLVGAKRTDIVETLFGIR  298 (491)
T ss_pred             EeCCc--EEEEecCCCCCHHHHHHHHcCCC
Confidence            33455  99999999999999999999865

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.11  E-value=0.00023  Score=66.44  Aligned_cols=27  Identities=30%  Similarity=0.631  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.+++..
T Consensus       277 ~~Ge--~~~iiG~NGsGKSTLlk~l~G~~  303 (501)
T PRK11288        277 RAGE--IVGLFGLVGAGRSELMKLLYGAT  303 (501)
T ss_pred             eCCc--EEEEEcCCCCCHHHHHHHHcCCC
Confidence            3445  99999999999999999999865

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.11  E-value=0.0001  Score=65.77  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=27.8

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +...+..++  +++|+|++|+|||||++.|.+-.....+
T Consensus        25 isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G   61 (351)
T PRK11432         25 LNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEG   61 (351)
T ss_pred             eEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence            333344456  9999999999999999999987633333

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.11  E-value=0.0004  Score=59.94  Aligned_cols=28  Identities=25%  Similarity=0.500  Sum_probs=24.5

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+..
T Consensus        33 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   60 (280)
T PRK13633         33 VKKGE--FLVILGRNGSGKSTIAKHMNALL   60 (280)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34456  99999999999999999999876

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.11  E-value=0.00011  Score=68.24  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++..
T Consensus       276 l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~  310 (490)
T PRK10938        276 LHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDH  310 (490)
T ss_pred             EeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence            333433344456  99999999999999999999864

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.11  E-value=0.00041  Score=59.84  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|++|+|||||++.|.+......+
T Consensus        30 i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G   62 (277)
T PRK13642         30 ITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEG   62 (277)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            44556  9999999999999999999987633333

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.10  E-value=0.00039  Score=62.18  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|++|+|||||++.|.+-.....+
T Consensus        25 i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G   57 (353)
T PRK10851         25 IPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSG   57 (353)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            33456  9999999999999999999997633333

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.10  E-value=0.00042  Score=57.54  Aligned_cols=32  Identities=41%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+..++  +++|+|++|+|||||++.|.+..
T Consensus        24 vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982        24 INLEINPGE--IVILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            333344556  99999999999999999999865

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.10  E-value=0.00037  Score=60.37  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        54 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         54 ALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            3444444445566  99999999999999999999864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.00011  Score=61.46  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      |....++++..-+..++  .|+|+|+.|+|||||++.|.+-.
T Consensus        15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhccc
Confidence            44444555555566677  99999999999999999998854

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.09  E-value=0.00046  Score=51.08  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.|+|..|+|||||++.+.+..
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999999765

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.09  E-value=0.00045  Score=64.31  Aligned_cols=46  Identities=33%  Similarity=0.468  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcC---C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG---E-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~---~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..|+..   + ....+-|+|+.|+||||||+.++++.
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4678999999999888864   2 25689999999999999999999976

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.09  E-value=0.00043  Score=51.95  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             EEEEecCCCchhHHHHHHHhhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~~  208 (238)
                      |-|+|+.|+|||||++.+.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            5689999999999999999976

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.08  E-value=0.00015  Score=61.33  Aligned_cols=43  Identities=30%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.||....++++..-+.+++  .+.++|+.||||||++|+|..-.
T Consensus         9 k~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLi   51 (309)
T COG1125           9 KRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             hhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhccc
Confidence            33454445555555555666  99999999999999999998765

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00025  Score=59.09  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++.+.-.+..++  +-+|.||||+|||||++.|.+++
T Consensus        18 eILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          18 EILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             hhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            44444444555667  89999999999999999999876

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.07  E-value=0.00043  Score=62.00  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        27 i~~Ge--~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650         27 VADGE--FIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHHCCC
Confidence            34455  99999999999999999999875

>PRK07667 uridine kinase; Provisional

Probab=97.07  E-value=0.00082  Score=54.84  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=28.3

Q ss_pred             HHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+.+.+..  +...+|+|-|+.|+|||||++.+....
T Consensus         4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l   41 (193)
T PRK07667          4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM   41 (193)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445555543  355799999999999999999998865

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.07  E-value=0.0004  Score=58.93  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+.+|+|+||+|||||++.|+.-
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~l   48 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFV   48 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.07  E-value=0.00013  Score=68.13  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|.+..
T Consensus        20 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   54 (501)
T PRK11288         20 LDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNY   54 (501)
T ss_pred             EeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445566  99999999999999999999875

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.07  E-value=0.00016  Score=60.59  Aligned_cols=47  Identities=26%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      -+|.....+++...+..++  +.+|+|+.|+|||||+|.|.+...+.++
T Consensus        17 ~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~G   63 (263)
T COG1127          17 SFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKG   63 (263)
T ss_pred             ecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCC
Confidence            3566666666666666777  9999999999999999999987644433

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.07  E-value=0.0004  Score=62.08  Aligned_cols=27  Identities=41%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+-.
T Consensus        28 ~~Ge--~~~l~GpsGsGKSTLLr~iaGl~   54 (353)
T TIGR03265        28 KKGE--FVCLLGPSGCGKTTLLRIIAGLE   54 (353)
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHHCCC
Confidence            3455  99999999999999999999976

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.07  E-value=0.00058  Score=63.84  Aligned_cols=46  Identities=28%  Similarity=0.226  Sum_probs=39.2

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l   60 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV   60 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999998887754 356999999999999999998876

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.06  E-value=0.00051  Score=58.51  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +..++  +++|+|++|+|||||++.|++......+
T Consensus        44 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   76 (257)
T cd03288          44 IKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDG   76 (257)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence            34456  9999999999999999999987533333

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.06  E-value=0.00042  Score=61.30  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++...+..++  +++|+|++|+|||||++.|.+-.
T Consensus        33 ~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308         33 GVSFTLERGK--TLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             eeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCC
Confidence            3333344556  99999999999999999999875

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.06  E-value=0.00038  Score=57.61  Aligned_cols=21  Identities=38%  Similarity=0.659  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .+++|+|+||+|||||++.|.
T Consensus        29 ~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          29 GLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHhe
Confidence            389999999999999999986

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.05  E-value=0.00019  Score=66.92  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.+++..
T Consensus       275 ~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~  310 (500)
T TIGR02633       275 RVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAY  310 (500)
T ss_pred             ccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCC
Confidence            3444444445566  99999999999999999999875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.05  E-value=9.5e-05  Score=66.30  Aligned_cols=29  Identities=24%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhc
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFL  209 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~  209 (238)
                      +..++  +++|+|++|+|||||++.|++...
T Consensus        16 i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~   44 (363)
T TIGR01186        16 IAKGE--IFVIMGLSGSGKSTTVRMLNRLIE   44 (363)
T ss_pred             EcCCC--EEEEECCCCChHHHHHHHHhCCCC
Confidence            33456  999999999999999999998763

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.05  E-value=0.00045  Score=62.76  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=25.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++  +++|+|++|+|||||++.|.+-..+..+
T Consensus        53 ~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070         53 EGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             CCC--EEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            345  9999999999999999999986533333

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.04  E-value=0.00017  Score=67.70  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.+++-.
T Consensus       301 il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~  336 (529)
T PRK15134        301 VVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLI  336 (529)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcC
Confidence            3455555555566  99999999999999999999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.04  E-value=0.00041  Score=65.22  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        24 ~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~   59 (529)
T PRK15134         24 VVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLL   59 (529)
T ss_pred             eeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence            3444444455567  99999999999999999999876

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.04  E-value=0.00011  Score=66.83  Aligned_cols=29  Identities=48%  Similarity=0.713  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||+|.|.+..
T Consensus        25 ~i~~Ge--iv~liGpNGaGKSTLLk~LaGll   53 (402)
T PRK09536         25 SVREGS--LVGLVGPNGAGKTTLLRAINGTL   53 (402)
T ss_pred             EECCCC--EEEEECCCCchHHHHHHHHhcCC
Confidence            344556  99999999999999999999865

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.04  E-value=0.00039  Score=65.09  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|++..
T Consensus       288 ~Ge--~~~l~G~NGsGKSTLl~~i~Gl~  313 (510)
T PRK15439        288 AGE--ILGLAGVVGAGRTELAETLYGLR  313 (510)
T ss_pred             CCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence            345  99999999999999999999865

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.03  E-value=0.00054  Score=50.62  Aligned_cols=21  Identities=33%  Similarity=0.317  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ..++|+|+.|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            489999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.00084  Score=62.26  Aligned_cols=46  Identities=24%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+.....|...+..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus        14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l   60 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL   60 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999888888888877765 457899999999999999998765

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=97.02  E-value=0.00096  Score=59.24  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..+..++-.+.+....-+.|.|++|+|||||++.+.+-.
T Consensus         5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            568999999888777777555568899999999999999997654

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.02  E-value=0.00048  Score=61.06  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        44 i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~   71 (331)
T PRK15079         44 LYEGE--TLGVVGESGCGKSTFARAIIGLV   71 (331)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHHCCC
Confidence            44456  99999999999999999999866

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.02  E-value=0.00039  Score=56.47  Aligned_cols=42  Identities=29%  Similarity=0.222  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ..+.++...+..++  .+-++|+.|+|||||+|+||....+..+
T Consensus        16 ~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G   57 (223)
T COG2884          16 EALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRG   57 (223)
T ss_pred             hhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCc
Confidence            35566666666667  8999999999999999999998744433

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.02  E-value=0.00082  Score=58.79  Aligned_cols=46  Identities=15%  Similarity=0.110  Sum_probs=39.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+.. ..+-++|+.|+||||||+.+++..
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4678999999999999987654 566668999999999999999865

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.02  E-value=0.001  Score=57.69  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++...+..+|.|+|++|+|||||++.+.+..
T Consensus        97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463         97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34444578899999999999999999999876

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.01  E-value=0.0027  Score=53.01  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      -.++.|+|++|+|||||+..++-.. ...+    .-..++|++....++..++.+
T Consensus        19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~   72 (235)
T cd01123          19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ   72 (235)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence            3599999999999999999987433 1111    235789998888777665543

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.01  E-value=0.00047  Score=64.39  Aligned_cols=27  Identities=26%  Similarity=0.539  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|++..
T Consensus       276 ~~Ge--~~~liG~NGsGKSTLl~~l~G~~  302 (501)
T PRK10762        276 RKGE--ILGVSGLMGAGRTELMKVLYGAL  302 (501)
T ss_pred             cCCc--EEEEecCCCCCHHHHHHHHhCCC
Confidence            3445  99999999999999999999865

>PRK13409 putative ATPase RIL; Provisional

Probab=96.99  E-value=0.0005  Score=65.53  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=24.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++|+|+||+|||||++.|.+...+..+.
T Consensus       367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~  395 (590)
T PRK13409        367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGE  395 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            99999999999999999999876334443

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.99  E-value=0.0012  Score=61.05  Aligned_cols=51  Identities=14%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCC
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFN  216 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd  216 (238)
                      ..++|+++.++.+...+..+.  -|-|.|++|+||||||+.+.... ...+.|.
T Consensus        20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~-~~~~~F~   70 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF-QNARAFE   70 (498)
T ss_pred             hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh-cccCcce
Confidence            466899999999988887776  69999999999999999999865 3333454

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.99  E-value=0.00079  Score=65.48  Aligned_cols=46  Identities=39%  Similarity=0.506  Sum_probs=36.8

Q ss_pred             CcceecHHHHH---HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLE---HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~---~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+....   .+...+..+...-+-++|++|+||||||+.+++..
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35688887764   45566666776678899999999999999999865

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.99  E-value=0.0029  Score=55.49  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             cceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhhc---cCCCCCCEEEEEE-eCCCCCHHHHH
Q 046124          164 TVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKFL---ESPTNFNYVIWVV-MSKDSRLENIQ  233 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~~---~v~~~Fd~~~wV~-vs~~~~~~~i~  233 (238)
                      +++|.+...+.+...+..+.. ...-++|+.|+||||||+.++....   ....|.|...|.. -++...+..|.
T Consensus         5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir   79 (313)
T PRK05564          5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR   79 (313)
T ss_pred             hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH
Confidence            568999999999999987643 4668999999999999998887541   2345778777766 34555555543

>PHA00729 NTP-binding motif containing protein

Probab=96.99  E-value=0.0012  Score=55.33  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=28.0

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++..+..++...|.|.|++|+||||||..|.+..
T Consensus         7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729          7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34555555666689999999999999999998764

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.012  Score=56.50  Aligned_cols=47  Identities=21%  Similarity=0.312  Sum_probs=38.9

Q ss_pred             CCcceecHHHHHHHHHHhc----CC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          162 EPTVVGLQLQLEHVWRCLE----GE--SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~----~~--~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+-||.++.++.++++|-    .+  +-.++.++||+|+|||.+++.|..-.
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL  462 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL  462 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence            3455999999999988773    11  45699999999999999999999866

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.98  E-value=0.00054  Score=56.46  Aligned_cols=20  Identities=30%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             EEEEEecCCCchhHHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~  205 (238)
                      +++|+|+||+|||||+..|+
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999994

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.97  E-value=0.0023  Score=48.95  Aligned_cols=41  Identities=34%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             EEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHH
Q 046124          187 VGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      |-++|+.|+|||+|++.++... .     ....-+.+++..+..++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~-~-----~~~~~i~~~~~~~~~dl~   42 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL-G-----RPVIRINCSSDTTEEDLI   42 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH-T-----CEEEEEE-TTTSTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-h-----cceEEEEeccccccccce
Confidence            5689999999999999999865 1     133446778877777764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=96.97  E-value=0.00051  Score=64.41  Aligned_cols=35  Identities=31%  Similarity=0.446  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|+||+|||||++.|++-.
T Consensus       300 l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~  334 (520)
T TIGR03269       300 VDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVL  334 (520)
T ss_pred             EeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            334433444556  99999999999999999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>CHL00181 cbbX CbbX; Provisional

Probab=96.97  E-value=0.0015  Score=56.80  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-++|++|+||||+|+.+++..
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58889999999999999997754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=96.96  E-value=0.00054  Score=60.69  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|.+|+|||||++.|.+-.
T Consensus        32 l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         32 VNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             EeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCC
Confidence            333334444566  99999999999999999999866

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.96  E-value=0.00057  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.|.|++|+||||+|+.+....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.96  E-value=0.00027  Score=60.26  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++...+..++  ++||||.+|+|||||++.|.+-.
T Consensus        30 d~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~   63 (268)
T COG4608          30 DGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLE   63 (268)
T ss_pred             cceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCc
Confidence            33444455567  99999999999999999999866

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.95  E-value=0.00069  Score=54.44  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+++|+|+.|+|||||++.+....
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHH
Confidence            35699999999999999999998766

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.95  E-value=0.0012  Score=55.85  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      -+++|+|+.|+|||||++.+....   .+.|+++.+++-
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~   49 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP   49 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence            379999999999999999998755   578888877754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK09183 transposase/IS protein; Provisional

Probab=96.94  E-value=0.015  Score=49.76  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.|+|++|+||||||..+.+..
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998764

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.94  E-value=0.0006  Score=61.48  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+-.
T Consensus        36 ~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~   64 (375)
T PRK09452         36 TINNGE--FLTLLGPSGCGKTTVLRLIAGFE   64 (375)
T ss_pred             EEeCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            334456  99999999999999999999866

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.94  E-value=0.00073  Score=54.06  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.++|+.|+||||+++.+++..
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l   31 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERL   31 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999998876

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=96.93  E-value=0.00065  Score=65.21  Aligned_cols=36  Identities=14%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++..-+..++  +++|+|+||+|||||++.|++..
T Consensus        31 ~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll   66 (623)
T PRK10261         31 AVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLL   66 (623)
T ss_pred             EEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCC
Confidence            3444444455566  99999999999999999999875

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.93  E-value=0.001  Score=65.90  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=38.9

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|++.+++.++..|......-+-++|++|+|||++|+.+....
T Consensus       180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            469999999999999987644456799999999999999998765

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.93  E-value=0.0028  Score=56.88  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE-EEEEEeCCCC-CHHHHHHHHh
Q 046124          171 QLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY-VIWVVMSKDS-RLENIQETIG  237 (238)
Q Consensus       171 ~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~-~~wV~vs~~~-~~~~i~~~Il  237 (238)
                      ....+++.+.. +.-.++.|+|+.|+|||||++.+.+.. .. ++=+. ++|+.+.+.. ++.++.+.+.
T Consensus       119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~~-~~~dv~~vv~lIgER~~EV~df~~~i~  186 (380)
T PRK12608        119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-AA-NHPEVHLMVLLIDERPEEVTDMRRSVK  186 (380)
T ss_pred             hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceEEEEEecCCCCCHHHHHHHHh
Confidence            34457777764 333489999999999999999998866 22 12233 5787777665 5567766653

>cd04155 Arl3 Arl3 subfamily

Probab=96.92  E-value=0.00065  Score=53.57  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|++|+|||||++.+.+.
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            4567999999999999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=96.92  E-value=0.00069  Score=58.49  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|++-.
T Consensus        20 l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~   54 (275)
T cd03289          20 LENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             eeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhc
Confidence            333444445566  99999999999999999999876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.92  E-value=0.00092  Score=55.09  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=27.1

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...++++|+++|+.|+|||||++.+....
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34445688999999999999999999998765

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.92  E-value=0.00035  Score=65.61  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      .++++...+..++  .++|+|+.|+|||||++.+.+-..+.++.
T Consensus       350 vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~  391 (529)
T TIGR02868       350 VLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGE  391 (529)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3444444455566  99999999999999999999876344443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.91  E-value=0.00072  Score=55.42  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      +++.|.|+||+|||||++.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            589999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.90  E-value=0.0011  Score=65.67  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=39.7

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..+..++..|......-+-++|++|+|||||++.+....
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence            3569999999999999887655567799999999999999998865

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.90  E-value=0.00068  Score=60.83  Aligned_cols=28  Identities=39%  Similarity=0.591  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        28 i~~Ge--~~~llGpsGsGKSTLLr~iaGl~   55 (362)
T TIGR03258        28 IEAGE--LLALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            34455  99999999999999999999865

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.90  E-value=0.00066  Score=52.76  Aligned_cols=24  Identities=38%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++|.++|+.|+|||||++.+.+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999999999998865

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00068  Score=65.05  Aligned_cols=29  Identities=24%  Similarity=0.170  Sum_probs=24.5

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|+||+|||||++.|++-.
T Consensus       346 ~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~  374 (623)
T PRK10261        346 DLWPGE--TLSLVGESGSGKSTTGRALLRLV  374 (623)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence            333455  99999999999999999999865

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.89  E-value=0.0012  Score=64.51  Aligned_cols=46  Identities=24%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.++..|......-+-++|++|+|||||++.+....
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3569999999999998877655567799999999999999998865

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.89  E-value=0.00073  Score=55.45  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+++|+|+||+|||||++.|..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHH
Confidence            5999999999999999999983

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.00091  Score=55.50  Aligned_cols=26  Identities=35%  Similarity=0.595  Sum_probs=24.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.+|||-|.+|+||||+++.|+..+
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~   32 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQL   32 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999999887

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=96.88  E-value=0.00071  Score=61.02  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        42 i~~Ge--~~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         42 IYKGE--IFALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            34455  99999999999999999999865

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.88  E-value=0.00096  Score=51.76  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      .+|+|+|+.|+|||||++.+.+.. . ...+...+......
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence            389999999999999999999987 2 23344444444433

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.88  E-value=0.0012  Score=59.26  Aligned_cols=45  Identities=31%  Similarity=0.384  Sum_probs=35.6

Q ss_pred             cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|.+..++.+...+..             ..+.-+-++|++|+||||||+.+++..
T Consensus       123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l  180 (364)
T TIGR01242       123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET  180 (364)
T ss_pred             HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence            467888888888776531             124468999999999999999999865

Many proteins may score above the trusted cutoff because an internal

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.87  E-value=0.0016  Score=51.65  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=29.4

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|..+|.+ +  ++.++|+.|+|||||++.+.++.
T Consensus        25 g~~~l~~~l~~-k--~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   25 GIEELKELLKG-K--TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             THHHHHHHHTT-S--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CHHHHHHHhcC-C--EEEEECCCCCCHHHHHHHHHhhc
Confidence            46677777766 4  89999999999999999999863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.87  E-value=0.0014  Score=58.75  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+...+..+.. ..+-++|+.|+||||||+.+.+..
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l   62 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL   62 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence            4678999999999988877643 467899999999999999998765

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.87  E-value=0.0017  Score=54.69  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             Cccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++| ....+..+-.+........+-|+|+.|+|||+|++.+++..
T Consensus        23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34445 33345555555444445689999999999999999999876

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.00068  Score=55.45  Aligned_cols=36  Identities=36%  Similarity=0.427  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++.--+..++  .+.++|+.|||||||++.+.+-.
T Consensus        20 ~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          20 ALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             hhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCc
Confidence            3444444455667  89999999999999999998754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.86  E-value=0.00089  Score=53.67  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|.|+|++|+|||||++.+.+.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999999754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=96.85  E-value=7.7e-05  Score=62.54  Aligned_cols=44  Identities=34%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES  211 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v  211 (238)
                      +|.=...+++..-+..++  +++++||||.|||||.+.|-+-..+.
T Consensus        14 FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~   57 (250)
T COG0411          14 FGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPS   57 (250)
T ss_pred             cCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCC
Confidence            333333344444444556  99999999999999999998765333

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.84  E-value=0.00087  Score=51.70  Aligned_cols=23  Identities=43%  Similarity=0.735  Sum_probs=20.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|+|+|+.|+|||||++.+....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.83  E-value=0.0011  Score=49.08  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|+|+|+.|+|||||.+.+.+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEECCCCCCHHHHHHHHhcc
Confidence            4899999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.83  E-value=0.0012  Score=43.88  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +..|.|++|+|||||+..+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987653

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.82  E-value=0.0008  Score=51.56  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             EEEEecCCCchhHHHHHHHhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~  207 (238)
                      |+|+|++|+|||||++.+.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999886

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.82  E-value=0.0013  Score=59.68  Aligned_cols=45  Identities=33%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++++...+..             ..++-|-++|++|+|||+||+.+++..
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~  189 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET  189 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence            456888888888776531             234568999999999999999999866

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.82  E-value=0.0014  Score=60.67  Aligned_cols=46  Identities=24%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+.....|..++..+... .+-++|+.|+||||+|+.+.+..
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L   64 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL   64 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999887643 57899999999999999998765

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00094  Score=61.80  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++++...+..++  .|+|+|..|+|||||++.+.+..
T Consensus       352 ~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~  388 (573)
T COG4987         352 KALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAW  388 (573)
T ss_pred             chhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhcc
Confidence            36777777777788  99999999999999999999754

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.81  E-value=0.00049  Score=55.70  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=28.1

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCC
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP  212 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~  212 (238)
                      .+...|..++  .++|+|-||+||+||||.+.+-..+..
T Consensus        31 ~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTs   67 (267)
T COG4167          31 PVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTS   67 (267)
T ss_pred             ceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCC
Confidence            3334455556  899999999999999999988664433

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.81  E-value=0.00087  Score=56.78  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|+||+|||||+..|+.-.
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l   46 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVL   46 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998533

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.81  E-value=0.00095  Score=62.45  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+..++  +++|+|+||+|||||++.|.+...+..+
T Consensus        46 sI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sG   79 (549)
T PRK13545         46 EVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKG   79 (549)
T ss_pred             EEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence            344556  9999999999999999999997633344

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.00092  Score=59.20  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.|++..
T Consensus        98 L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257         98 LHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            334444444566  99999999999999999999865

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.80  E-value=0.0024  Score=48.40  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...|..++  +|.+.|.=|+|||||+|.+....
T Consensus         6 ~~l~~~l~~g~--vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen    6 KKLAQILKPGD--VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             HHHHHHHSS-E--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCC--EEEEECCCCCCHHHHHHHHHHHc
Confidence            44556666666  99999999999999999998876

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK08727 hypothetical protein; Validated

Probab=96.79  E-value=0.0021  Score=54.08  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=37.2

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeC
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMS  224 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs  224 (238)
                      ..++|.......+.....+....-+.|+|+.|+|||+|++.+++.. ...+  ..++++++.
T Consensus        20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~~~~--~~~~y~~~~   78 (233)
T PRK08727         20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-EQAG--RSSAYLPLQ   78 (233)
T ss_pred             hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-HHcC--CcEEEEeHH
Confidence            3444544444444444333333469999999999999999999876 2222  345566543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.79  E-value=0.0011  Score=54.13  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|+|++|+|||||++.+....
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            355699999999999999999998865

>PLN02796 D-glycerate 3-kinase

Probab=96.78  E-value=0.00098  Score=59.10  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-+|+|.|+.|+|||||++.|.+..
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL  124 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLF  124 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence            45689999999999999999999876

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.78  E-value=0.001  Score=51.53  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEecCCCchhHHHHHHHhhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~~  208 (238)
                      |.|+|++|+||||+++.+....
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997653

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.0043  Score=59.34  Aligned_cols=46  Identities=28%  Similarity=0.356  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++||.+..++.|...+..+.+. .+-++|+.|+||||||+.+.+..
T Consensus        16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL   62 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL   62 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999887543 56889999999999999987765

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.77  E-value=0.0017  Score=64.49  Aligned_cols=46  Identities=22%  Similarity=0.365  Sum_probs=39.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++.++..++..|......-+-++|++|+|||||++.+....
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            3569999999999999987655567799999999999999998765

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.76  E-value=0.0017  Score=59.29  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+++|++|+||||++..+.+..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999887753

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.76  E-value=0.005  Score=58.07  Aligned_cols=46  Identities=33%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+..|...+..+.. ..+-++|+.|+||||||+.+.+..
T Consensus        16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L   62 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL   62 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999887654 347789999999999999998754

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.75  E-value=0.087  Score=47.62  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+++|++|+||||++..+....
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999998765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.73  E-value=0.0011  Score=59.87  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+-.
T Consensus        52 i~~I~G~nGsGKSTLlr~L~Gl~   74 (382)
T TIGR03415        52 ICVLMGLSGSGKSSLLRAVNGLN   74 (382)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            99999999999999999999876

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.73  E-value=0.00055  Score=57.29  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHH
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLL  201 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLa  201 (238)
                      +...+..++  +++|+|++|+|||||+
T Consensus        14 vsl~i~~Ge--~~~l~G~sGsGKSTL~   38 (226)
T cd03270          14 VDVDIPRNK--LVVITGVSGSGKSSLA   38 (226)
T ss_pred             ceeecCCCc--EEEEEcCCCCCHHHHH
Confidence            333445566  9999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.72  E-value=0.0013  Score=62.53  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE  210 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~  210 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+
T Consensus       358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCC
Confidence            3444444455566  8999999999999999999987633

>PLN02165 adenylate isopentenyltransferase

Probab=96.72  E-value=0.0015  Score=57.75  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=24.5

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+....+|+|+||.|+|||||+..|....
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l   67 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRF   67 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence            44445599999999999999999998765

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.71  E-value=0.0027  Score=57.73  Aligned_cols=46  Identities=20%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             CcceecHHHHHHHHHHhcCC--------------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGE--------------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.++.++.+.-.+...              .++.|-++|+.|+||||||+.+....
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l   71 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA   71 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            46789888888876555431              24689999999999999999999876

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.71  E-value=0.0011  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|+|+|+.|+|||||+..+....
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999988764

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.70  E-value=0.0021  Score=58.48  Aligned_cols=50  Identities=36%  Similarity=0.558  Sum_probs=37.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEE---EEEeCCCCCHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVI---WVVMSKDSRLENIQE  234 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~---wV~vs~~~~~~~i~~  234 (238)
                      ++-|+|||||.|||||+++|.+....+..+.|...   -|.+..+..+..+++
T Consensus       291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~  343 (807)
T KOG0066|consen  291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK  343 (807)
T ss_pred             ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence            57799999999999999999998767777777543   234555555555554

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.70  E-value=0.0019  Score=57.53  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++|.++.+..|+..+.+....-|-|.|+.|+||||+|+.+++-.
T Consensus        17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l   62 (350)
T CHL00081         17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL   62 (350)
T ss_pred             HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999998888887766667799999999999999997655

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.69  E-value=0.0036  Score=54.27  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=19.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -+-++|++|+||||+|+.+....
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            58899999999999998777654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.69  E-value=0.0062  Score=52.11  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHH
Q 046124          169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      ...++.+...+..+.  -|-+.|+.|+||||||+.+....   ..   ..++++.+...+..++
T Consensus         8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl   63 (262)
T TIGR02640         8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL   63 (262)
T ss_pred             HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence            345566666666554  56799999999999999998744   11   2344555555554444

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.68  E-value=0.0064  Score=60.02  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=39.5

Q ss_pred             CcceecHHHHHHHHHHhcCCcceE-EEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGI-VGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~v-I~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|...+..+.+.- +-++|+.|+||||+|+.+.+..
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L   62 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL   62 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            467999999999999888775544 5899999999999999998876

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.68  E-value=0.0022  Score=58.19  Aligned_cols=46  Identities=22%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.|..++..+... -+-++|+.|+||||+|+.+.+..
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l   62 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999988877543 48899999999999999987765

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.67  E-value=0.007  Score=58.04  Aligned_cols=46  Identities=24%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.|..++..+. ...+-++|+.|+||||+|+.+.+..
T Consensus        15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L   61 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL   61 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467999999999999998775 3577899999999999999987654

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.67  E-value=0.004  Score=51.07  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      -.++-|+|++|+|||||+..+.....   ..-..++|++... ++...+.+
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~   58 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ   58 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence            45999999999999999998876541   2346788988765 66555544

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK09087 hypothetical protein; Validated

Probab=96.67  E-value=0.0028  Score=53.10  Aligned_cols=25  Identities=36%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+.|+|+.|+|||||++.++...
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc
Confidence            3569999999999999999998654

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.67  E-value=0.0068  Score=56.83  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=39.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.|..++..+... .+-++|+.|+||||+|+.+.+..
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999877544 57899999999999999987755

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=96.66  E-value=0.0017  Score=52.27  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .++..|+|+||+||||++..|.-
T Consensus        19 ~g~~vi~G~Ng~GKStil~ai~~   41 (202)
T PF13476_consen   19 PGLNVIYGPNGSGKSTILEAIRY   41 (202)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999998753

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=96.66  E-value=0.0014  Score=63.54  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+-..+..+
T Consensus       468 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G  508 (686)
T TIGR03797       468 ILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESG  508 (686)
T ss_pred             ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4445544555566  9999999999999999999987633334

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK06893 DNA replication initiation factor; Validated

Probab=96.65  E-value=0.0046  Score=51.82  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=27.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeC
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMS  224 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs  224 (238)
                      ...+-|+|+.|+|||+|++.+++.. ...  ...+.+++++
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~--~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHY-LLN--QRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH-HHc--CCCeEEeeHH
Confidence            3468999999999999999999976 221  2234566553

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.65  E-value=0.0061  Score=50.54  Aligned_cols=49  Identities=22%  Similarity=0.253  Sum_probs=35.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      -.++.|+|++|+|||||+..+.... ...+    .=..++|+.....++...+.
T Consensus        19 g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~   71 (226)
T cd01393          19 GRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV   71 (226)
T ss_pred             CcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH
Confidence            3499999999999999999987643 1111    11456888887777766554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.65  E-value=0.00069  Score=63.88  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+..+
T Consensus       333 ~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G  373 (544)
T TIGR01842       333 TLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSG  373 (544)
T ss_pred             ccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3444444455566  9999999999999999999987634444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.64  E-value=0.00068  Score=64.31  Aligned_cols=41  Identities=37%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+..+
T Consensus       330 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G  370 (569)
T PRK10789        330 ALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEG  370 (569)
T ss_pred             cccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3444444555566  9999999999999999999987634444

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.64  E-value=0.0014  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.|.|++|+||||+|+.+....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            47789999999999999998864

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.63  E-value=0.002  Score=59.71  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+++|++|+||||++..+....
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHH
Confidence            3699999999999999999999865

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.63  E-value=0.0017  Score=57.29  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=23.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+++|++|+||||++..+....
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45699999999999999999998876

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.62  E-value=0.0011  Score=56.76  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=26.8

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES  211 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v  211 (238)
                      |..-+-.+.  +++++|+||.||||++|.+-+...+.
T Consensus        43 isf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~   77 (325)
T COG4586          43 ISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPT   77 (325)
T ss_pred             eeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccC
Confidence            333333456  99999999999999999998865433

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.61  E-value=0.0015  Score=61.64  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  .++|+|++|+|||||++.+.+..
T Consensus       339 l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~  373 (547)
T PRK10522        339 VGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLY  373 (547)
T ss_pred             EecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            444444445566  99999999999999999999865

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.00078  Score=62.36  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=38.0

Q ss_pred             CCcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124          162 EPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES  211 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v  211 (238)
                      .++.||.-..++.+...+..++  +.+++|-||+|||||+|.+.+-.++.
T Consensus        14 i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~   61 (500)
T COG1129          14 ISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPD   61 (500)
T ss_pred             ceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCC
Confidence            3455666666777777777788  99999999999999999999876333

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.60  E-value=0.00057  Score=55.93  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.+..++++..-+..++  +.+|+||||.|||||+-.+..-.
T Consensus        11 y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~   51 (252)
T COG4604          11 YGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLL   51 (252)
T ss_pred             hCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhc
Confidence            343333333333333445  99999999999999999998755

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.60  E-value=0.0085  Score=58.23  Aligned_cols=46  Identities=26%  Similarity=0.364  Sum_probs=38.3

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|..++..+.+ ..+-++|+.|+||||+++.+.+..
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL   62 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL   62 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999987653 355799999999999999877655

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=96.59  E-value=0.00085  Score=65.36  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  +++|+|++|+|||||++.+.+-..+.++
T Consensus       496 vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G  536 (711)
T TIGR00958       496 VLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGG  536 (711)
T ss_pred             cccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            4555555555667  9999999999999999999987633333

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.59  E-value=0.0027  Score=63.09  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=38.8

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|++..+..++..|......-+-++|++|+|||+|++.+....
T Consensus       174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            469999999999999977654567799999999999999988765

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.59  E-value=0.0034  Score=52.30  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .....+..+... ....-+.|+|+.|+|||+||+.+++..
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            344445444442 234578899999999999999999865

>cd04163 Era Era subfamily

Probab=96.58  E-value=0.0018  Score=49.87  Aligned_cols=25  Identities=36%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+++|+.|+|||||++.+.+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~   27 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQK   27 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCc
Confidence            3589999999999999999987753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.58  E-value=0.0015  Score=48.11  Aligned_cols=22  Identities=32%  Similarity=0.680  Sum_probs=18.9

Q ss_pred             EEEEecCCCchhHHHHHHHhhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~~  208 (238)
                      |=|+|++|+|||+||+.+..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999987655

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.58  E-value=0.0017  Score=58.66  Aligned_cols=26  Identities=42%  Similarity=0.613  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|+++|++|+||||++..+....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999998766

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.57  E-value=0.0032  Score=52.89  Aligned_cols=46  Identities=20%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++||.++..+.+.-...+++..-+-|-||+|+||||=+..+.+..
T Consensus        27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            4679999999999888899988899999999999999777776654

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.015  Score=54.13  Aligned_cols=41  Identities=27%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             eecHH-HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQL-QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~-~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ||.+. .++.+..-+..++  .|||+|.+|+||||++++++.=.
T Consensus       361 y~~k~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~  402 (591)
T KOG0057|consen  361 YGPKRKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFF  402 (591)
T ss_pred             eCCCCceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHh
Confidence            55444 5555555566667  99999999999999999998644

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=96.56  E-value=0.0019  Score=61.17  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+..+
T Consensus       355 iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G  395 (576)
T TIGR02204       355 ALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSG  395 (576)
T ss_pred             cccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            3444444455667  9999999999999999999997633344

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.56  E-value=0.0019  Score=61.00  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+.+|+|.|++|+|||||++.|.+..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            467899999999999999999998865

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=96.54  E-value=0.0017  Score=60.18  Aligned_cols=32  Identities=31%  Similarity=0.571  Sum_probs=28.1

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCCCCE
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNY  217 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~  217 (238)
                      +.||+|+||+||||+++.|++...+...+|+.
T Consensus       103 rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~  134 (614)
T KOG0927|consen  103 RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF  134 (614)
T ss_pred             eEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence            89999999999999999999987666667664

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.54  E-value=0.0017  Score=54.81  Aligned_cols=28  Identities=39%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  .++|+|++|+|||||++++.+-.
T Consensus        27 i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl   54 (235)
T COG1122          27 IEKGE--RVLLIGPNGSGKSTLLKLLNGLL   54 (235)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHcCcC
Confidence            34455  99999999999999999999866

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.54  E-value=0.0019  Score=52.25  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEE
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWV  221 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV  221 (238)
                      +++|+|+.|.|||||+++|.+=..+.    .-.+|+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P~----~G~i~i   58 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETPA----SGEILI   58 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccCCC----CceEEE
Confidence            99999999999999999999854222    235676

>PLN03211 ABC transporter G-25; Provisional

Probab=96.54  E-value=0.00046  Score=66.62  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+..
T Consensus        92 ~~Ge--~~aI~GpnGaGKSTLL~iLaG~~  118 (659)
T PLN03211         92 SPGE--ILAVLGPSGSGKSTLLNALAGRI  118 (659)
T ss_pred             ECCE--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3445  99999999999999999999865

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=96.54  E-value=0.001  Score=62.44  Aligned_cols=36  Identities=31%  Similarity=0.295  Sum_probs=29.1

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+-.
T Consensus       337 il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~  372 (529)
T TIGR02857       337 ALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFV  372 (529)
T ss_pred             cccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            4555555555666  99999999999999999999866

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.54  E-value=0.002  Score=53.55  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+++.|+|+||.|||||++.+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            47999999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=96.54  E-value=0.00099  Score=64.82  Aligned_cols=41  Identities=22%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .|+|+|++|+|||||++.+.+-..+..+
T Consensus       494 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G  534 (710)
T TIGR03796       494 LIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSG  534 (710)
T ss_pred             cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4555555555566  9999999999999999999987633333

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.53  E-value=0.00083  Score=62.64  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++..-+..++  ++||||..|+|||||++.|.+-.
T Consensus       307 v~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~  341 (539)
T COG1123         307 VDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLL  341 (539)
T ss_pred             eeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            444445555667  99999999999999999999866

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.52  E-value=0.001  Score=63.16  Aligned_cols=41  Identities=24%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+..+
T Consensus       355 il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G  395 (574)
T PRK11160        355 VLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQG  395 (574)
T ss_pred             ceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4555555555666  9999999999999999999987633333

>cd01858 NGP_1 NGP-1

Probab=96.52  E-value=0.0084  Score=46.96  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             eecHHHHHHHHHHhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLE---GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.+...+.+...+.   ......|+++|++|+|||||.+.+.++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858          81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence            355555555544432   2234578899999999999999998854

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.51  E-value=0.011  Score=55.08  Aligned_cols=44  Identities=25%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+++|.+...+.|...+..+... -+-++|+.|+||||+|+.+..
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence            46799999999998888777544 688999999999999998865

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.51  E-value=0.002  Score=61.33  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .|+|+|++|+|||||++.+.+-..+..+
T Consensus       350 iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G  390 (588)
T PRK13657        350 GVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSG  390 (588)
T ss_pred             eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            4555555555667  9999999999999999999987634443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.51  E-value=0.0032  Score=56.65  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++++|++|+||||++..+....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999998764

>PRK08181 transposase; Validated

Probab=96.51  E-value=0.067  Score=46.07  Aligned_cols=42  Identities=24%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      .|+....  -+-++|+.|+|||.||..+.+...   .....+.++++
T Consensus       101 ~~~~~~~--nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~  142 (269)
T PRK08181        101 SWLAKGA--NLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT  142 (269)
T ss_pred             HHHhcCc--eEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH
Confidence            4555444  599999999999999999988662   12224456554

>PRK10536 hypothetical protein; Provisional

Probab=96.50  E-value=0.0055  Score=52.29  Aligned_cols=42  Identities=17%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++......++.+|.+.+  .|.+.|+.|+|||+||..+.-+.
T Consensus        57 i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~   98 (262)
T PRK10536         57 ILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             ccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence            3566667777777887765  99999999999999999987753

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=96.49  E-value=0.00088  Score=61.69  Aligned_cols=39  Identities=36%  Similarity=0.468  Sum_probs=27.4

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ||....+..---.|..+.  +=|+||+||+|||||++.|.+
T Consensus        90 ~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   90 YGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHh
Confidence            554443333333333344  899999999999999999998

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=96.49  E-value=0.0021  Score=62.59  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  .|+|+|++|+|||||++.+.+-..+..+
T Consensus       490 L~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G  529 (708)
T TIGR01193       490 LSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSG  529 (708)
T ss_pred             eeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence            444444444566  9999999999999999999887633444

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.49  E-value=0.0023  Score=55.47  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+||||++..+....
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999998766

>cd00879 Sar1 Sar1 subfamily

Probab=96.49  E-value=0.0021  Score=51.65  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|++|+|||||++.+.+.
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.48  E-value=0.0077  Score=57.59  Aligned_cols=46  Identities=22%  Similarity=0.302  Sum_probs=38.2

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L   62 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL   62 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999988754 456899999999999999985443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.48  E-value=0.0043  Score=48.83  Aligned_cols=36  Identities=33%  Similarity=0.630  Sum_probs=30.1

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE--EEEE
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY--VIWV  221 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~--~~wV  221 (238)
                      .++  ++.+.||.||||+||..-+.+..   .+.|+|  .+|+
T Consensus        27 ~Ge--ivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l   64 (213)
T COG4136          27 KGE--IVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWL   64 (213)
T ss_pred             CCc--EEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEE
Confidence            345  99999999999999999999976   467776  6777

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.47  E-value=0.0015  Score=52.76  Aligned_cols=50  Identities=26%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEE
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWV  221 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV  221 (238)
                      ||..+.++.+.-.-..++  ||+|+|..|+||+|+++.|.--.    ..-.-.|||
T Consensus        16 ~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE----~P~~G~I~v   65 (256)
T COG4598          16 YGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLE----KPSAGSIRV   65 (256)
T ss_pred             cccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhc----CCCCceEEE
Confidence            555444444433333456  99999999999999999997533    222345666

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.47  E-value=0.0045  Score=51.02  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++|.+..+.-+.-...+..  -|-++|+.|+|||+||+.+-.-.
T Consensus         3 ~dI~GQe~aKrAL~iAAaG~h--~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAAGGH--HLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred             hhhcCcHHHHHHHHHHHcCCC--CeEEECCCCCCHHHHHHHHHHhC
Confidence            467898888888766666554  79999999999999999998655

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=96.47  E-value=0.0022  Score=62.24  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .|+|+|++|+|||||++.+.+-..+..+
T Consensus       480 vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G  520 (694)
T TIGR03375       480 ALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEG  520 (694)
T ss_pred             ceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3455555555666  9999999999999999999986633343

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=96.47  E-value=0.00097  Score=63.20  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++++...+..++  +++|||+.|+|||||++++.+-.
T Consensus       343 ~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~  379 (567)
T COG1132         343 PVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLY  379 (567)
T ss_pred             ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            45666777777778  99999999999999999998765

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.47  E-value=0.0079  Score=49.35  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=34.3

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc----CCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE----SPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~----v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      -+...+....  +..|+||+|+||||++..+......    ....-...+-++...+..+..++..+.
T Consensus         9 Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~   74 (236)
T PF13086_consen    9 AIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK   74 (236)
T ss_dssp             HHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence            3333443334  7889999999999766655544300    012334556666666666677666654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.46  E-value=0.0026  Score=52.44  Aligned_cols=25  Identities=44%  Similarity=0.638  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCchhHHHH-HHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLT-HINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak-~i~~~~  208 (238)
                      .-.|+|+|.+|+|||||++ .+++..
T Consensus         9 ~~kv~liG~~g~GKTtLi~~~~~~~~   34 (215)
T PTZ00132          9 EFKLILVGDGGVGKTTFVKRHLTGEF   34 (215)
T ss_pred             CceEEEECCCCCCHHHHHHHHHhCCC
Confidence            3479999999999999995 666543

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.45  E-value=0.0024  Score=52.64  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|+.|+|||||++.+...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            5568999999999999999999754

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.45  E-value=0.0057  Score=52.06  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=34.9

Q ss_pred             HHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC
Q 046124          171 QLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR  228 (238)
Q Consensus       171 ~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~  228 (238)
                      ...+++..|..  ++..+|||.|++|+|||||...+.... ...++=-.++-|.-|.+++
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~t   72 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFT   72 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCC
Confidence            45566666653  467899999999999999999988776 3233322334444444443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.45  E-value=0.0052  Score=55.98  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             CcceecHHHHHHHHHHhcC---------C-----cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG---------E-----SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~---------~-----~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+.+         +     ....|-++|+.|+||||||+.+....
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l   74 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999888888776643         0     14689999999999999999998865

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=96.44  E-value=0.0024  Score=61.69  Aligned_cols=40  Identities=15%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  +++|+|++|+|||||++.+.+..+...+
T Consensus       468 l~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G  507 (659)
T TIGR00954       468 IESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGG  507 (659)
T ss_pred             eecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            444433444556  9999999999999999999997533334

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=96.44  E-value=0.0023  Score=60.99  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ++++...+..++  .++|+|++|+|||||++.+.+...+..+
T Consensus       351 l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G  390 (585)
T TIGR01192       351 VFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVG  390 (585)
T ss_pred             ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence            444444445566  9999999999999999999887633333

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.44  E-value=0.0024  Score=60.86  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .++++...+..++  .|+|+|++|+|||||++.+.+-..+..+
T Consensus       356 il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G  396 (592)
T PRK10790        356 VLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEG  396 (592)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            3444444455566  9999999999999999999987633333

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.44  E-value=0.0074  Score=52.71  Aligned_cols=27  Identities=33%  Similarity=0.538  Sum_probs=23.8

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+|+|+|++|+|||||+..+....
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999988765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=96.44  E-value=0.0057  Score=58.74  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il  237 (238)
                      ..++|.++..+.|...+....  .+-++|+.|+|||||++.+.... . ...|+..+|..- .+.+...+++.++
T Consensus        31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~  100 (637)
T PRK13765         31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVP  100 (637)
T ss_pred             HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHH
Confidence            456898888888887777664  79999999999999999999866 2 234677788655 3445566665553

>cd01878 HflX HflX subfamily

Probab=96.44  E-value=0.0023  Score=52.19  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|.+|+|||||++.+.+..
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcch
Confidence            3589999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=96.43  E-value=0.0028  Score=58.46  Aligned_cols=18  Identities=33%  Similarity=0.578  Sum_probs=17.3

Q ss_pred             eEEEEEecCCCchhHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLT  202 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak  202 (238)
                      .+|+|+|++|+|||||++
T Consensus        33 Eiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        33 SLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             CEEEEECCCCCCHHHHHh
Confidence            399999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.43  E-value=0.0038  Score=56.75  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=34.3

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.+...+.    .         ..++-|-++|++|+||||||+.+.+..
T Consensus       146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l  203 (398)
T PTZ00454        146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT  203 (398)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence            45677777777766542    1         135678899999999999999999865

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.42  E-value=0.0027  Score=60.12  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  .|+|+|++|+|||||++.+.+..
T Consensus       348 l~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~  382 (571)
T TIGR02203       348 LDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFY  382 (571)
T ss_pred             ccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence            444444445566  99999999999999999999876

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.42  E-value=0.011  Score=49.13  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      -.++-|+|++|+|||||+..+.....   ..-..++|++.- .++...+
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~   67 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF   67 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence            45999999999999999999887552   223567888876 5555444

>cd01394 radB RadB

Probab=96.41  E-value=0.012  Score=48.53  Aligned_cols=42  Identities=19%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      .-.++-|.|++|+|||||+-.+.....   ..=..++|++....+
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~   59 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLS   59 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCC
Confidence            345999999999999999999886541   122346677654444

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.013  Score=56.13  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++++..-+..++  ++++|||+|.||||+|.++-+=.
T Consensus       482 ~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             hhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence            36777777778888  99999999999999999987644

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=96.41  E-value=0.0094  Score=57.08  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ..++|.++..+.+...+....  -+-++|+.|+|||||++.+.+.. .. ..|...+.+ .....+...+++.+
T Consensus        18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~~-~~~~~~~~~-~n~~~~~~~~~~~v   86 (608)
T TIGR00764        18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-PD-EELEDILVY-PNPEDPNMPRIVEV   86 (608)
T ss_pred             hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-Cc-hhheeEEEE-eCCCCCchHHHHHH
Confidence            466888888887777776654  55599999999999999999876 22 233433433 22333444555544

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.41  E-value=0.0084  Score=53.14  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=28.8

Q ss_pred             HHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++..+.  .+...+|+|.|++|+|||||+..+....
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344555553  3567899999999999999999987766

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.40  E-value=0.0067  Score=57.19  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +++|.+.....+...+......-|-|+|+.|+||||+|+.+++.
T Consensus        66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            57898888888887776554456789999999999999999864

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.40  E-value=0.0027  Score=49.00  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.|+|..|+|||||++.+.+..
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~~   25 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQNH   25 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999987653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.40  E-value=0.0031  Score=50.81  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.8

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+....|+|+|.+|+|||||++.+++.
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            346678999999999999999999984

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.39  E-value=0.004  Score=59.70  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             CcceecHHHHHHHHHHhcCC-----cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGE-----SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~-----~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+.++..+|...     ...++.|+|+.|+||||+++.+.+..
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l  134 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL  134 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46788888888888888652     23469999999999999999999865

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14527 adenylate kinase; Provisional

Probab=96.38  E-value=0.003  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ..+|.|+|++|+||||+++.+..
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998873

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.38  E-value=0.0028  Score=48.07  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|+++|+.|+|||||+..+.+..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998766

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.37  E-value=0.0032  Score=49.93  Aligned_cols=24  Identities=38%  Similarity=0.681  Sum_probs=22.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|..|+|||||++.+....
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998876

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.37  E-value=0.013  Score=55.13  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+... .+-++|+.|+||||+|+.+....
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL   62 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999876544 46799999999999999987654

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.37  E-value=0.0051  Score=49.47  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=27.7

Q ss_pred             HHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..+..++.. .....|.|+|.+|+|||||++.+.+.
T Consensus         4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~   40 (184)
T smart00178        4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND   40 (184)
T ss_pred             HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence            4556665532 44568999999999999999999874

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.37  E-value=0.0026  Score=57.77  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=24.8

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-.++|+|+|+.|+|||||++.+....
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998864

>cd00154 Rab Rab family

Probab=96.37  E-value=0.0029  Score=48.29  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.++|+.|+|||||++.+.+..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~   24 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGK   24 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999997765

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-08
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	4e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 5e-16
 Identities = 34/209 (16%), Positives = 82/209 (39%), Gaps = 45/209 (21%)

Query: 47  CRNILQISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVAR----- 101
            ++IL +  D   F    DC       ++++ K++++ E E+  +I +K+ V        
Sbjct: 18  YKDILSVFEDA--FVDNFDC-----KDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFW 69

Query: 102 VVNAERQQTMTR-----LNKVQGWLSRFGKKVAKKLRDAGTLMA------NGAFEVVAER 150
            + +++++ + +     L     +L      +  + R    +        +  +      
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 151 APESVADERPIEPTVVGLQLQLEHVWRCL-EGESVGIVGLYGMGGVGKTTL-LTHINNKF 208
           A  +V+  +P       L+L+     + L E      V + G+ G GKT + L    +  
Sbjct: 127 AKYNVSRLQPY------LKLR-----QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 209 LESPTNFNYVIWVVMSK----DSRLENIQ 233
           ++   +F  + W+ +      ++ LE +Q
Sbjct: 176 VQCKMDFK-IFWLNLKNCNSPETVLEMLQ 203

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 7/122 (5%)

Query: 114 LNKVQGWLSRFGKKVAKKLRDAGTLMANGAFEVVAERAPESVADER---PIEPTVVG--- 167
               Q  L+ F +       +   L+          R            P + T      
Sbjct: 76  NYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREY 135

Query: 168 LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHI-NNKFLESPTNFNYVIWVVMSKD 226
              ++      +       + L+G  G GK+ + +   +        N++ ++W+  S  
Sbjct: 136 HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 195

Query: 227 SR 228
           + 
Sbjct: 196 AP 197

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 126 KKVAKKLRDAGTLMANGAFEVVAERAPESVADER-----PIEPTV-VGLQLQLEHVWRCL 179
           K +A  L D   ++++ + +         V         P  P V V  +  +  + + L
Sbjct: 81  KDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKL 140

Query: 180 --EGESVGIVGLYGMGGVGKTTLLTHI-NNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236
                  G V ++GM G GK+ L      +  L        V WV + K  +   + +  
Sbjct: 141 SKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF-NYVIWVVMSKDSRL 229
            ++     L GE  G V +YGM G GK+ L              F   V WV + K  + 
Sbjct: 135 AIQQKLWKLNGEP-GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193

Query: 230 E 230
            
Sbjct: 194 G 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.5
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.19
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.99
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.89
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	98.38
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.25
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.22
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.1
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.09
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.07
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.99
2fna_A	357	Conserved hypothetical protein; structural genomic	97.99
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.97
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.97
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.97
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.82
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.81
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.8
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.73
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.73
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.71
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.71
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.7
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.67
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.67
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.67
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.66
1g6h_A	257	High-affinity branched-chain amino acid transport	97.66
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.65
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.65
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.64
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.64
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.64
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.63
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.63
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.62
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.61
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.61
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.6
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.6
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.6
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.59
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.58
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.58
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.58
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.56
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.56
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.56
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.55
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.55
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.5
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.48
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.47
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.46
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.46
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.45
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.45
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.44
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.44
3bos_A	242	Putative DNA replication factor; P-loop containing	97.43
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.43
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.43
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.43
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.42
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.42
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.42
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.41
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.41
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.41
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.41
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.39
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.39
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.38
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.38
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.37
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.36
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.36
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.36
3pvs_A	447	Replication-associated recombination protein A; ma	97.35
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.35
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.35
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.34
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.34
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.33
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.33
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.33
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.32
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.31
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.31
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.3
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.3
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.29
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.29
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.27
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.27
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.26
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.25
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.25
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.23
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.22
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.21
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.21
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.21
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.2
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.2
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.2
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.19
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.19
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.17
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.17
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.17
2og2_A	359	Putative signal recognition particle receptor; nuc	97.16
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.15
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.15
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.13
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.11
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.1
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.08
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.08
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.08
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.07
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.07
3co5_A	143	Putative two-component system transcriptional RES	97.06
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.05
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.04
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.03
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.02
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.02
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.01
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.0
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.0
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.0
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.99
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.99
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.99
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.99
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.97
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.96
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.96
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.95
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.92
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.91
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.9
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.9
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.89
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.88
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.87
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.86
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.83
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.82
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.81
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.81
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.81
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.8
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.76
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.76
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.75
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.75
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.75
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.74
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.74
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.73
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.72
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.72
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.71
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.7
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.7
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.68
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.66
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.65
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.65
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.64
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.63
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.62
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.62
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.62
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.6
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.6
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.6
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.58
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.58
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.57
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.57
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.53
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.53
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.53
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.53
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.53
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.53
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.51
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.5
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.5
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.47
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.46
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.46
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.45
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.43
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.43
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.43
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.42
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.37
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.37
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.36
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.35
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.35
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.35
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.35
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.34
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.34
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.33
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.33
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.33
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.32
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.32
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.32
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.3
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.3
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.28
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.27
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.24
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.24
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.24
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.23
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.23
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.22
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.22
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.22
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.2
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.18
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.18
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.17
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.16
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.16
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.16
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.16
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.15
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.15
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.15
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.14
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.13
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.13
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.12
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.1
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.09
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.09
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.09
3ice_A	422	Transcription termination factor RHO; transcriptio	96.09
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.08
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.07
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.07
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.06
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.04
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.04
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.04
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.03
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.02
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.02
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.02
2qgz_A	308	Helicase loader, putative primosome component; str	96.0
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.99
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.98
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.96
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.92
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.92
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.88
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.88
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.88
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.88
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.87
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.84
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.84
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.84
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.82
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.82
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.81
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.8
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.8
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.79
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.79
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.79
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.79
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.76
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.76
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.76
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.75
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.74
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.73
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.72
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.72
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.72
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.69
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.67
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.66
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.62
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.61
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.61
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.61
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.6
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.59
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.59
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.59
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.59
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.58
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.57
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.56
2xxa_A	433	Signal recognition particle protein; protein trans	95.55
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.53
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.54
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.54
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.54
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.53
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.53
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.52
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.52
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.5
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.5
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.46
3end_A	307	Light-independent protochlorophyllide reductase ir	95.46
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.45
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.45
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.44
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.44
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.43
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.41
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.41
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.4
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.4
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.4
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.36
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.36
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.32
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.25
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.24
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.21
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	95.19
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.14
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.14
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.11
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.11
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.08
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.07
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.04
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.04
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.01
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.97
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.94
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.91
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.9
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.9
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.9
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	94.86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.83
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.8
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.77
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.71
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.67
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.65
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	94.62
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.61
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.6
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.56
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.56
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.53
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.5
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.31
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	94.29
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.24
3io5_A	333	Recombination and repair protein; storage dimer, i	94.17
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.14
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.07
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.01
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.98
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	93.97
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	93.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.78
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	93.76
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.73
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	93.73
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.71
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.69
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.68
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	93.65
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	93.61
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	93.6
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	93.57
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	93.5
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	93.48
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.47
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.42
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.37
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	93.37
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	93.35
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	93.28
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	93.22
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	93.15
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	92.96
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	92.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.86
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	92.63
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	92.62
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.61
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.59
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	92.59
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.55
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	92.5
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.48
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.38
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	92.37
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	92.3
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.23
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	92.15
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	92.12
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	92.11
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	92.06
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	92.06
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	91.92

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.50  E-value=2.8e-14  Score=132.60  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             eecHHHHHHHHHHhcCC---cceEEEEEecCCCchhHHHHHHHh--hhccCCCCCCEEEEEEeCCCC--CHHHHHHHHh
Q 046124          166 VGLQLQLEHVWRCLEGE---SVGIVGLYGMGGVGKTTLLTHINN--KFLESPTNFNYVIWVVMSKDS--RLENIQETIG  237 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~---~~~vI~IvG~gGvGKTTLak~i~~--~~~~v~~~Fd~~~wV~vs~~~--~~~~i~~~Il  237 (238)
                      ||++.++++|..+|..+   +.++|+|+||||+||||||+.+|+  +. .+..+|+.++||++++.+  +...++++|+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence            69999999999999654   678999999999999999999998  45 678999999999999986  8888888876

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.19  E-value=7.5e-12  Score=122.51  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             cceecHHHHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE-EEEEEeCCCCCHHHHHHHHh
Q 046124          164 TVVGLQLQLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY-VIWVVMSKDSRLENIQETIG  237 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~-~~wV~vs~~~~~~~i~~~Il  237 (238)
                      ..+||+..++.|..+|.+ +..++|+|+||||+||||||+.+|++. .+..+|++ ++||++++.++...++..|+
T Consensus       129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll  203 (1221)
T 1vt4_I          129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQ  203 (1221)
T ss_dssp             SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            349999999999999876 567899999999999999999999876 56678997 99999999999888777654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.99  E-value=4.2e-10  Score=104.81  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             CcceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccC-CCCC-CEEEEEEeCCCCCHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLES-PTNF-NYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v-~~~F-d~~~wV~vs~~~~~~~i~~  234 (238)
                      ..+||++..++.|..+|..  +..++|+|+||||+||||||+.++++. .. ..+| +.++|+++++. +...++.
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~  197 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLM  197 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred             CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHH
Confidence            4679999999999999974  467899999999999999999999865 33 5678 58999999876 3333433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.89  E-value=1e-09  Score=109.35  Aligned_cols=66  Identities=24%  Similarity=0.321  Sum_probs=54.2

Q ss_pred             CcceecHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC-CEEEEEEeCCCCC
Q 046124          163 PTVVGLQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF-NYVIWVVMSKDSR  228 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F-d~~~wV~vs~~~~  228 (238)
                      ..+|||+.+++.|..+|.  +++.++|+|+||||+||||||+.+|++......+| +.++||++++..+
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK  192 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred             ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence            457999999999999995  35788999999999999999999998752224445 5778999998654

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=98.38  E-value=1.8e-06  Score=63.73  Aligned_cols=74  Identities=11%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             hhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH---HHHHHH
Q 046124           54 SIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRF---GKKVAK  130 (238)
Q Consensus        54 ~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~~---~~~~~~  130 (238)
                      +++.+ ++++.+++.+++..+.|++++++.|+++|+.|+++|.|       ++.+..+..++.++.|+.++   ++.+..
T Consensus         2 ~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED   73 (115)
T 3qfl_A            2 AISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED   73 (115)
T ss_dssp             TTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence            45667 89999999999999999999999999999999999999       66652015789999999873   344444


Q ss_pred             HHHHH
Q 046124          131 KLRDA  135 (238)
Q Consensus       131 ~i~~i  135 (238)
                      -+++.
T Consensus        74 ~iD~f   78 (115)
T 3qfl_A           74 VVDKF   78 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.25  E-value=1.1e-06  Score=76.50  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             CcceecHHHHHHHHHHhc----CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLE----GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~----~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ..++|++..++.+..++.    .+....+.|+|++|+|||||++.+++......+.-...+|+..+...+...+...+
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i   97 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL   97 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence            467999999999999887    34556899999999999999999998662111101245677655555555555444

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.22  E-value=1.4e-06  Score=76.86  Aligned_cols=74  Identities=22%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CcceecHHHHHHHHHHh-c----C--CcceEEEE--EecCCCchhHHHHHHHhhhccCC---CCCC-EEEEEEeCCCCCH
Q 046124          163 PTVVGLQLQLEHVWRCL-E----G--ESVGIVGL--YGMGGVGKTTLLTHINNKFLESP---TNFN-YVIWVVMSKDSRL  229 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L-~----~--~~~~vI~I--vG~gGvGKTTLak~i~~~~~~v~---~~Fd-~~~wV~vs~~~~~  229 (238)
                      ..++|++.+++.+..+| .    .  .....+.|  +|++|+|||||++.+++.. ...   ..|+ ..+|+..+...+.
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  100 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL  100 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence            46799999999998887 3    2  23345656  9999999999999999876 211   1123 3567776676777


Q ss_pred             HHHHHHHh
Q 046124          230 ENIQETIG  237 (238)
Q Consensus       230 ~~i~~~Il  237 (238)
                      ..++..|+
T Consensus       101 ~~~~~~l~  108 (412)
T 1w5s_A          101 YTILSLIV  108 (412)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.12  E-value=2.2e-06  Score=73.70  Aligned_cols=53  Identities=21%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      ..++||+..++.+..++..+  ..+.|+|+.|+|||||++.+.+..    +    .+|+.+..
T Consensus        12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~   64 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRE   64 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHH
T ss_pred             HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeec
Confidence            46799999999999988765  599999999999999999999864    1    56776543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.10  E-value=8.2e-06  Score=71.27  Aligned_cols=72  Identities=18%  Similarity=0.155  Sum_probs=53.2

Q ss_pred             CcceecHHHHHHHHHHhcC----Ccce--EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG----ESVG--IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~----~~~~--vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ..++|++..++.+..++..    +...  .+.|+|++|+|||||++.+++.. ..... -..+|+..+...+...+...+
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l   94 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI   94 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence            4679999999999888864    3334  89999999999999999999977 22212 245677766766666666554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.09  E-value=3.9e-06  Score=65.37  Aligned_cols=46  Identities=22%  Similarity=0.365  Sum_probs=40.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.+...+.......+-|+|+.|+||||||+.+++..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999987766678999999999999999998875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.07  E-value=6e-06  Score=65.82  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.+..++.......+-|+|+.|+|||||++.+++..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999987765569999999999999999998865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.99  E-value=6.4e-06  Score=64.07  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=40.4

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..+..+...+......-+-|+|+.|+||||||+.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999987666678999999999999999998875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.99  E-value=1.5e-05  Score=68.41  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      ..++|++.+++.|.. +..   +++.|+|+.|+|||||++.+.+.. .  .   ..+|+....
T Consensus        13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~   65 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRK   65 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGG
T ss_pred             HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchh
Confidence            467999999999999 766   599999999999999999999876 2  1   257887654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.97  E-value=5.1e-06  Score=72.60  Aligned_cols=74  Identities=15%  Similarity=0.016  Sum_probs=51.3

Q ss_pred             CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccC---CCC--CCEEEEEEeCCCC-CHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLES---PTN--FNYVIWVVMSKDS-RLENI  232 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v---~~~--Fd~~~wV~vs~~~-~~~~i  232 (238)
                      ..++|++..++.+..+|..    +....+.|+|++|+||||||+.+++.....   ...  ....+|+..+... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            4679999999988876643    445689999999999999999999865111   011  2356777765554 55444


Q ss_pred             HHHH
Q 046124          233 QETI  236 (238)
Q Consensus       233 ~~~I  236 (238)
                      ...|
T Consensus       100 ~~~l  103 (384)
T 2qby_B          100 LSSL  103 (384)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.97  E-value=4.5e-06  Score=64.95  Aligned_cols=39  Identities=26%  Similarity=0.095  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      ...+...+..++  +++|+|++|+|||||++.+.+-. +..+
T Consensus        23 l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           23 EILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             HHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             HhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence            333333344556  99999999999999999999876 4444

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.97  E-value=8.9e-06  Score=70.80  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCC---CCCCEEEEEEeCCCCCHHHHHHH
Q 046124          163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESP---TNFNYVIWVVMSKDSRLENIQET  235 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~---~~Fd~~~wV~vs~~~~~~~i~~~  235 (238)
                      ..++|++..++.+..+|..    +....+.|+|++|+||||||+.+++......   +.--..+|+..+...+...+...
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   98 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA   98 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence            4679999999999998843    4556899999999999999999998651100   00124567776666666555554


Q ss_pred             H
Q 046124          236 I  236 (238)
Q Consensus       236 I  236 (238)
                      |
T Consensus        99 l   99 (387)
T 2v1u_A           99 I   99 (387)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.82  E-value=1.4e-05  Score=64.28  Aligned_cols=46  Identities=24%  Similarity=0.231  Sum_probs=39.3

Q ss_pred             CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.+..++..+. ...+.|+|++|+|||||++.+++..
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            357999999999999887653 3578999999999999999998876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.81  E-value=2e-05  Score=63.53  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+.|...+..  ....+|+|+|++|+|||||++.|.+..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345556666543  345699999999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.80  E-value=1.1e-05  Score=65.65  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=32.8

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCC
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFN  216 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd  216 (238)
                      +|....++++    ..++  +++|+|+||+|||||++.+.+- .+..+...
T Consensus        10 ~g~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~   53 (208)
T 3b85_A           10 LGQKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS   53 (208)
T ss_dssp             HHHHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred             HhHHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence            5554445543    4566  9999999999999999999987 45555554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.73  E-value=1.5e-05  Score=69.20  Aligned_cols=46  Identities=30%  Similarity=0.336  Sum_probs=37.3

Q ss_pred             CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..     +....+.|+|++|+||||||+.+.+..
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4568888888888777653     233579999999999999999999976

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.73  E-value=1.5e-05  Score=65.47  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        29 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGE--FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTC--EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            445  99999999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.72  E-value=1.8e-05  Score=63.72  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=23.3

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|.+-.
T Consensus        17 i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           17 AAVGR--VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             --CCC--EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            34455  99999999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.71  E-value=1.7e-05  Score=65.70  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++++...+..+.  +|+|.|++|+|||||++.+.+..
T Consensus        12 ~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           12 DLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -----------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence            334555555454444  99999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.71  E-value=1.6e-05  Score=65.78  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        30 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGE--FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence            345  99999999999999999999865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.70  E-value=2.6e-05  Score=61.11  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=30.5

Q ss_pred             cHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....++.+..++.+   .....+.|+|++|+|||||++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455555555543   234589999999999999999999876

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.70  E-value=1.7e-05  Score=64.62  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+..++  +++|+|++|+|||||++.+.+..
T Consensus        13 l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           13 GLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            344444455555  89999999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.67  E-value=3.9e-05  Score=67.13  Aligned_cols=45  Identities=22%  Similarity=0.191  Sum_probs=33.1

Q ss_pred             CCCccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          161 IEPTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       161 ~~~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+.++ ....++.+ .-+..++  +++|+|+||+|||||++.|.+..
T Consensus        50 ~l~~~~~tg~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           50 VIDQPFILGVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CCCSEECCSCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccceecCCCCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            3344455 23455555 4455667  99999999999999999999976

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.67  E-value=2.5e-05  Score=66.33  Aligned_cols=46  Identities=20%  Similarity=0.361  Sum_probs=40.3

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.+..++..+....+-|+|+.|+||||+|+.+++..
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            3578999999999999988765559999999999999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.67  E-value=1.9e-05  Score=66.39  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        31 ~Ge--~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGD--VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            455  99999999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.66  E-value=2e-05  Score=65.38  Aligned_cols=26  Identities=42%  Similarity=0.530  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|++-.
T Consensus        31 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQ--IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            455  99999999999999999999865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.66  E-value=2e-05  Score=66.07  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|.+-.
T Consensus        31 ~~Ge--~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGD--VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3455  99999999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.65  E-value=1.8e-05  Score=64.62  Aligned_cols=26  Identities=38%  Similarity=0.614  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.+++-.
T Consensus        34 ~Ge--~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGN--VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTC--CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            455  99999999999999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.65  E-value=2.1e-05  Score=66.61  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|.+-.
T Consensus        32 ~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGE--VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTS--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence            3456  99999999999999999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.64  E-value=2.2e-05  Score=66.11  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        49 ~Ge--i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGE--VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEEcCCCCcHHHHHHHHHcCC
Confidence            445  99999999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.64  E-value=2.4e-05  Score=62.32  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|++|+|||||++.+.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            389999999999999999998753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.64  E-value=2.3e-05  Score=64.93  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.|.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            99999999999999999999865

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.64  E-value=2.5e-05  Score=65.20  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .++  +++|+|+||+|||||++.|.+-
T Consensus        28 ~Ge--~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGE--VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCC
Confidence            455  9999999999999999999984

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.63  E-value=2.6e-05  Score=65.71  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=23.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|.+-.
T Consensus        35 ~~Ge--~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGE--MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTC--EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence            3456  99999999999999999999865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.63  E-value=2.4e-05  Score=64.41  Aligned_cols=26  Identities=31%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        33 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQ--LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            345  99999999999999999999866

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.63  E-value=2.6e-05  Score=65.75  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..++  +++|+|+||+|||||++.|++-
T Consensus        44 ~~Ge--~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGE--VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTC--EEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence            3455  9999999999999999999985

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.62  E-value=2.4e-05  Score=65.56  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|++-.
T Consensus        40 ~Ge--i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGE--IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence            455  99999999999999999999865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.61  E-value=2.6e-05  Score=64.71  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|+||+|||||++.+.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            599999999999999999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.61  E-value=3.1e-05  Score=61.02  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|++|+|||||++.+.+..
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcc
Confidence            489999999999999999998763

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.61  E-value=2.6e-05  Score=66.18  Aligned_cols=27  Identities=41%  Similarity=0.484  Sum_probs=23.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|++-.
T Consensus        45 ~~Ge--~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGD--KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            3456  99999999999999999999865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.60  E-value=2.8e-05  Score=64.55  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=21.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.|++-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            99999999999999999999865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.60  E-value=2.7e-05  Score=65.00  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            99999999999999999999865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.60  E-value=2.8e-05  Score=64.79  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        34 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGE--VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            455  99999999999999999999865

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.59  E-value=5.3e-05  Score=65.57  Aligned_cols=46  Identities=20%  Similarity=0.334  Sum_probs=39.7

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..+....+.++|++|+||||||+.+.+..
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999988875459999999999999999998865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.58  E-value=3e-05  Score=65.31  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|++-.
T Consensus        32 ~Ge--~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGE--CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            345  99999999999999999999865

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.58  E-value=5.7e-05  Score=64.23  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+..++..+....+-|+|+.|+||||+|+.+++..
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4578999999999999987765569999999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.58  E-value=3.1e-05  Score=64.76  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        30 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGD--ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTC--EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            445  99999999999999999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.58  E-value=3.1e-05  Score=65.43  Aligned_cols=26  Identities=27%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|++-.
T Consensus        44 ~Ge--~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGK--VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            445  99999999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=3.4e-05  Score=66.74  Aligned_cols=46  Identities=15%  Similarity=0.117  Sum_probs=38.5

Q ss_pred             CcceecHHHHHHHHHHh-cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCL-EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L-~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++ ..+....+.|+|++|+|||||++.+.+..
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999888 66654449999999999999999998853

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.56  E-value=2.9e-05  Score=60.70  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             eEEEEEecCCCchhHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHI  204 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i  204 (238)
                      .+++|+|++|+|||||++.+
T Consensus        10 ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            39999999999999999953

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=4.6e-05  Score=65.69  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+..++..+....+-|+|++|+||||||+.+.+..
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999988754459999999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.56  E-value=4.2e-05  Score=61.36  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+|+|+|++|+|||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999775

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.56  E-value=3.4e-05  Score=64.76  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+-.
T Consensus        45 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGT--TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhccC
Confidence            345  99999999999999999999865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.55  E-value=8.9e-05  Score=59.37  Aligned_cols=40  Identities=18%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++.+.+.+..   ....+|+|.|++|+|||||++.+.+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455666666653   345799999999999999999998765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.55  E-value=6.6e-05  Score=64.53  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++.+...+..++  +++|+|++|+|||||++.|.+-.
T Consensus       113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence            345666666666677  99999999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=7.7e-05  Score=62.58  Aligned_cols=46  Identities=28%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..             ....-+-|+|++|+||||||+.+++..
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4678999988888777632             234579999999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.48  E-value=5.2e-05  Score=64.74  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.|.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            99999999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.47  E-value=9.9e-05  Score=55.98  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|....+..+...+..  ....-|-|+|+.|+|||+||+.|++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            457888888888776642  222247899999999999999999865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.46  E-value=0.00011  Score=66.23  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             Cccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++ ....++.+ .-+..++  +++|+|++|+|||||++.|.+..
T Consensus       138 ~~~~~tg~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          138 EHVLDTGVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CSBCCCSCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ceecCCCceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence            34454 23455665 4455667  99999999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.46  E-value=0.00011  Score=62.27  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=34.6

Q ss_pred             cceecHHHHHHHHHHhc---------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE---------------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~---------------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..++.+...+.               .....-+-|+|+.|+||||||+.+.+..
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            46888887777765543               2234468999999999999999888765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.45  E-value=6e-05  Score=63.31  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++++.  +..++  +++|+|++|+|||||++.+.+..
T Consensus        15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhC
Confidence            3455554  44455  99999999999999999998865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.45  E-value=0.0001  Score=62.87  Aligned_cols=46  Identities=26%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..             .....|.|+|++|+||||||+.+++..
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            3578888888877766531             234579999999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.44  E-value=6.4e-05  Score=66.03  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        29 ~Ge--~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGE--ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTC--EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCC--EEEEECCCCchHHHHHHHHhcCC
Confidence            345  99999999999999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.44  E-value=5.8e-05  Score=57.90  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++|+|++|+|||||++.+++..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3489999999999999999999977

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.43  E-value=0.00015  Score=58.67  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++.+..++.......+-|+|++|+||||||+.+++..
T Consensus        37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4666777776665555689999999999999999999876

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.43  E-value=6.7e-05  Score=61.35  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|++|+|||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            399999999999999999999876

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.43  E-value=0.00014  Score=61.48  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..            ....-+-|+|++|+||||||+.+.+..
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4678999888888776631            124578999999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.42  E-value=7.3e-05  Score=59.73  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+|||||++.+.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34599999999999999999998765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.42  E-value=6.9e-05  Score=61.83  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.|....
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4599999999999999999999543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.42  E-value=6.6e-05  Score=64.69  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+|||||++.|.+-.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhc
Confidence            44599999999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.42  E-value=6.3e-05  Score=58.24  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+|+|+|++|+|||||++.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.41  E-value=6.4e-05  Score=63.26  Aligned_cols=23  Identities=43%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|+||+|||||++.|++-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            99999999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.41  E-value=0.00032  Score=56.50  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhcc--CCC-CCCEEEEEEeCCCCCH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLE--SPT-NFNYVIWVVMSKDSRL  229 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~--v~~-~Fd~~~wV~vs~~~~~  229 (238)
                      .+++|+|++|+|||||++.+.+....  ..+ .-...+|+.-...+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~   73 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP   73 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence            39999999999999999999874311  111 2335777765444443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.41  E-value=0.00014  Score=61.40  Aligned_cols=45  Identities=27%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             CcceecHHHHHHHHHHhc----C---------C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE----G---------E-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~----~---------~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++.|.++.++.|...+.    .         . ... +.++|++|+|||||++.|.+..
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc
Confidence            355677777777765432    1         1 122 9999999999999999999976

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.41  E-value=7.3e-05  Score=65.60  Aligned_cols=27  Identities=41%  Similarity=0.535  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|.+-.
T Consensus        39 ~~Ge--~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGE--MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTC--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            3455  99999999999999999999865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.39  E-value=0.00015  Score=65.81  Aligned_cols=46  Identities=24%  Similarity=0.350  Sum_probs=39.5

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..+..+...|......-+-|+|++|+||||||+.++...
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999976544567899999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.39  E-value=0.00015  Score=57.70  Aligned_cols=51  Identities=25%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhcCC----cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          170 LQLEHVWRCLEGE----SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       170 ~~~~~l~~~L~~~----~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      ..++.+..++...    ....+-|+|++|+||||||+.+++.. ..  ....++|++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~~--~~~~~~~~~~   90 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-AK--RNVSSLIVYV   90 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-HT--TTCCEEEEEH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEEh
Confidence            3455555565433    12589999999999999999999977 22  2234566654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.38  E-value=0.00011  Score=58.75  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.7

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|+|++|+|||||++.+.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344599999999999999999998876

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.38  E-value=8.2e-05  Score=65.39  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=21.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            99999999999999999999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.37  E-value=8.5e-05  Score=65.35  Aligned_cols=23  Identities=39%  Similarity=0.638  Sum_probs=21.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            99999999999999999999865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.36  E-value=8.9e-05  Score=65.63  Aligned_cols=26  Identities=35%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        28 ~Ge--~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGE--FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCC--EEEEEcCCCchHHHHHHHHHcCC
Confidence            345  99999999999999999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.36  E-value=9e-05  Score=65.22  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=24.2

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|+||+|||||++.|.+-.
T Consensus        51 i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           51 VPAGQ--IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECTTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCC--EEEEEcCCCchHHHHHHHHhcCC
Confidence            33456  99999999999999999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.36  E-value=9e-05  Score=65.43  Aligned_cols=26  Identities=35%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        28 ~Ge--~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGE--FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTC--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCC--EEEEECCCCcHHHHHHHHHHcCC
Confidence            345  99999999999999999999865

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.35  E-value=0.00012  Score=66.11  Aligned_cols=46  Identities=30%  Similarity=0.339  Sum_probs=39.8

Q ss_pred             CcceecHHHH---HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQL---EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~---~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+   ..+...+..+....+-|+|+.|+||||||+.|.+..
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            4678998888   677888877777789999999999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.35  E-value=0.00013  Score=60.36  Aligned_cols=46  Identities=26%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             CcceecHHHHHHHHHHh---cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCL---EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+   ..         .-..-|.|+|++|+||||||+.+.+..
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence            46788887777665443   22         113358899999999999999999876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.35  E-value=9.9e-05  Score=58.68  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|++|+|||||++.+.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            389999999999999999997654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.34  E-value=9.5e-05  Score=65.28  Aligned_cols=26  Identities=35%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        36 ~Ge--~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGE--FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCC--EEEEECCCCChHHHHHHHHHcCC
Confidence            345  99999999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.34  E-value=7.2e-05  Score=65.48  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            99999999999999999999865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.00013  Score=58.27  Aligned_cols=24  Identities=38%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|.|+|+.|+||||+++.+....
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            389999999999999999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.33  E-value=0.0002  Score=59.02  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CcceecHHHHHHHHHHh---cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCL---EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+..++   ..         ....-|-|+|+.|+||||||+.+++..
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45788887777765543   22         123457899999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.33  E-value=0.00014  Score=62.45  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.+.+..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4599999999999999999999876

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.32  E-value=7.3e-05  Score=64.31  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        79 ~Ge--~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQ--TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTC--EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCchHHHHHHHHHcCC
Confidence            345  99999999999999999998865

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.32  E-value=0.00014  Score=61.61  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=39.8

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+....+-++|+.|+||||+|+.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            3578999999999999887765559999999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.31  E-value=7.8e-05  Score=60.88  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=16.0

Q ss_pred             eEEEEEecCCCchhHHHHHHH-hhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN-NKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~-~~~  208 (238)
                      .+|+|+|++|+|||||++.+. +..
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            389999999999999999999 643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.31  E-value=6.6e-05  Score=65.85  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.|.+-.
T Consensus        30 ~Ge--~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGE--RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTC--EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            345  99999999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.31  E-value=0.00013  Score=56.70  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+|+|+|++|+|||||++.+.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            58999999999999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.30  E-value=0.00012  Score=65.80  Aligned_cols=41  Identities=20%  Similarity=0.115  Sum_probs=30.6

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +|... +..+...+..+..-.++|+|++|+|||||++.|++.
T Consensus        25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            44434 777777777777333999999999999999999885

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.30  E-value=0.00041  Score=59.05  Aligned_cols=46  Identities=28%  Similarity=0.391  Sum_probs=37.3

Q ss_pred             CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+.....+..++..     .....+-|+|+.|+||||||+.+++..
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999888888777652     233578899999999999999999876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.30  E-value=0.00021  Score=61.87  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.+|||.|++|+|||||++.+....
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45699999999999999999998765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.30  E-value=0.00024  Score=61.62  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+|||||++.+.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.29  E-value=0.00012  Score=62.67  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++|+|+||+|||||++.+.+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999999876

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.29  E-value=0.00013  Score=58.83  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=22.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+||+|+|||||++.+....
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3489999999999999999998775

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.0003  Score=60.73  Aligned_cols=44  Identities=5%  Similarity=0.067  Sum_probs=37.7

Q ss_pred             ceecHHHHHHHHHHhc----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          165 VVGLQLQLEHVWRCLE----GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~----~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.||+.+++.+...|.    .+....+-|+|++|+|||++++.|.++.
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5789988888877665    4566789999999999999999999987

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.27  E-value=0.00017  Score=61.04  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=36.4

Q ss_pred             cceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..++.+...+...         ....+.++|++|+||||||+.+.+..
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            4578888888887776542         13579999999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.26  E-value=0.00025  Score=60.70  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.7

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|+|++|+|||||++.+.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344699999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.26  E-value=0.00016  Score=66.80  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=26.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +..++  +++|+|+||+|||||++.|.+...+..+.
T Consensus        44 i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           44 VKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            34556  99999999999999999999865333333

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.25  E-value=0.00094  Score=54.21  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i  232 (238)
                      .++.|+|++|+|||||++.+.... ....    .-..++|+.....++...+
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~   75 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL   75 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH
Confidence            399999999999999999998853 1111    1346788877665554433

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0002  Score=64.96  Aligned_cols=32  Identities=19%  Similarity=0.069  Sum_probs=25.8

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+..++  +++|+|++|+|||||++.|++-.
T Consensus       131 vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          131 IRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CceEeCCCC--EEEEECCCCCCHHHHHHHHhCcc
Confidence            333344556  99999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.23  E-value=0.00016  Score=63.44  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...+..++  .++|+|++|+|||||++.+.+..
T Consensus       166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence            44555555666  89999999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.22  E-value=0.00016  Score=64.21  Aligned_cols=27  Identities=37%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+-.
T Consensus        45 ~~Ge--~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           45 SPGQ--RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CTTC--EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             cCCC--EEEEECCCCChHHHHHHHHhCCC
Confidence            3456  99999999999999999999854

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.21  E-value=0.00029  Score=64.63  Aligned_cols=46  Identities=24%  Similarity=0.296  Sum_probs=39.2

Q ss_pred             CcceecHHHHHHHHHHhcC-----------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..+|..                 +..+.+-|+|+.|+||||||+.+.+..
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4679999999999998865                 123689999999999999999999865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.21  E-value=0.00045  Score=55.26  Aligned_cols=43  Identities=23%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      .++.|+|++|+|||||++.+.. . .    =..++|++....++...+.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~   63 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV   63 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence            3999999999999999999987 3 1    1357788776655655544

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.21  E-value=0.00037  Score=61.05  Aligned_cols=43  Identities=26%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             eecHHHHHHHHHHh----cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCL----EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L----~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+...+.++..+    ..+....|.|+|++|+|||||++.+.+..
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            34445555555544    35666679999999999999999988754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00021  Score=67.05  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=27.1

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF  215 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F  215 (238)
                      .++  +++|+|+||+|||||++.|.+-..+..+.+
T Consensus       102 ~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          102 PGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCC--EEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            345  999999999999999999999764455554

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.20  E-value=0.00029  Score=61.04  Aligned_cols=46  Identities=24%  Similarity=0.231  Sum_probs=39.0

Q ss_pred             CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|++..++.+...+..+. ...+-|+|+.|+||||||+.+.+..
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            357999999999999887654 3468899999999999999998865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.20  E-value=0.00029  Score=60.57  Aligned_cols=46  Identities=22%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+..++..     .....|-|+|+.|+||||||+.+.+..
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4679999988888887753     344578999999999999999998865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.20  E-value=0.00021  Score=61.99  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.+...+..++  .++|+|++|+|||||++.+.+..
T Consensus       160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            3455555555566  89999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.19  E-value=0.0002  Score=66.24  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++|+|+||+|||||++.|++...+..+.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  342 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGK  342 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            99999999999999999999976334444

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.19  E-value=0.00029  Score=59.35  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             CcceecHHHHHHHHHHhcC--------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG--------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..              ....-+-++|+.|+||||||+.+.+..
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999888888776643              123468899999999999999999876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.17  E-value=0.0003  Score=65.81  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..+.  .+.|+|++|+||||||+.|.+..
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTS
T ss_pred             ceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccC
Confidence            356899999999988888876  89999999999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.17  E-value=0.0002  Score=66.15  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=24.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+++|+|+||+|||||+|.|.+...+..+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G   54 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIPNFG   54 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            39999999999999999999986533444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.17  E-value=0.00035  Score=59.53  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=24.1

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+|+|+|+.|+|||||++.+....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998766

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.17  E-value=0.00035  Score=61.02  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             CcceecHHHHHHHHHHhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+.            .....-|-|+|+.|+||||||+.+++..
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            357899988888877763            1234578999999999999999999865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.17  E-value=0.0002  Score=59.49  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+|+|+|++|+|||||++.+..
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4999999999999999999984

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.17  E-value=0.00049  Score=59.71  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             CcceecHHHHHH---HHHHhcCCcc--eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEH---VWRCLEGESV--GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~---l~~~L~~~~~--~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+.....   +...+..+..  ..+-|+|+.|+||||||+.+.+..
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467999887665   4555555432  489999999999999999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.16  E-value=0.0002  Score=62.85  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|+||+|||||++.+.+..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhc
Confidence            4599999999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.15  E-value=0.00018  Score=57.32  Aligned_cols=25  Identities=24%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|.|++|+|||||++.+....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.15  E-value=0.00041  Score=59.78  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|...+..            ...+-|-++|+.|+||||||+.+++..
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            4678888888888765521            123578899999999999999999865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.14  E-value=0.00024  Score=56.07  Aligned_cols=25  Identities=36%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|++|+|||||++.+.+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.13  E-value=0.00024  Score=59.27  Aligned_cols=40  Identities=25%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             ecHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          167 GLQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       167 G~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +....++++...+..   +.  +|+|+|+.|+||||+++.+.+..
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence            444567777666665   55  89999999999999999998865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.13  E-value=0.00046  Score=59.28  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             CcceecHHHHHHHHHHhc----------C--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE----------G--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~----------~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|...+.          .  ....-|-++|+.|+|||+||+.+++..
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            467899999888887762          1  123468999999999999999999876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.12  E-value=0.00024  Score=66.64  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=24.6

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +++|+|+||+|||||++.|.+...+..+.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  412 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGK  412 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            99999999999999999999976334444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.12  E-value=0.00026  Score=66.41  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=26.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN  214 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~  214 (238)
                      +..++  +++|+|+||+|||||++.|.+...+..+.
T Consensus       114 i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          114 VKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            34455  99999999999999999999865334443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.11  E-value=0.00024  Score=65.70  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=24.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      +++|+|+||+|||||++.|++-..+..+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G  323 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEITADEG  323 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999997633334

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.10  E-value=0.00028  Score=56.42  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.+.+..
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999998753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.09  E-value=0.00026  Score=61.60  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+++|+|++|+|||||++.+.+..
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            34599999999999999999998644

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.08  E-value=0.00028  Score=55.07  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+.+|+|+||+|||||++.|+.-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999999753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.08  E-value=0.00029  Score=59.58  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+..-+..++  +++|+|++|+|||||++.+....
T Consensus        25 Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           25 INDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             HHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHH
Confidence            455554455566  99999999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.08  E-value=0.00053  Score=55.20  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+.+-..+......+|+|+|.+|+|||||+..+....
T Consensus        24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344455555555567899999999999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.07  E-value=0.00025  Score=58.53  Aligned_cols=22  Identities=41%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             EEEEecCCCchhHHHHHHHhhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.|+|++|+|||||++.+++..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.07  E-value=0.00026  Score=62.02  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998865

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.07  E-value=0.00039  Score=67.63  Aligned_cols=46  Identities=24%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..+..++..|......-+.++|++|+||||||+.+.+..
T Consensus       170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999987655568899999999999999998865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.06  E-value=0.00018  Score=54.37  Aligned_cols=45  Identities=18%  Similarity=0.129  Sum_probs=31.7

Q ss_pred             cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+.....+...+..  ....-|-|+|+.|+|||+||+.+++..
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            457887777777666542  122247799999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.05  E-value=0.00031  Score=56.50  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|++|+|||||++.+.+..
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            4589999999999999999998765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.04  E-value=0.00025  Score=57.06  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|++|+|||||++.+....
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            399999999999999999998654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.03  E-value=0.00042  Score=55.63  Aligned_cols=42  Identities=21%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+...+.+...+......+|+|+|.+|+|||||+..+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344555666555555567899999999999999999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.02  E-value=0.00058  Score=61.05  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++|+|++|+|||||++.+.+-.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            4499999999999999999999843

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.02  E-value=0.00059  Score=65.43  Aligned_cols=46  Identities=24%  Similarity=0.350  Sum_probs=39.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.+...|......-+-++|++|+||||+|+.+.+..
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999976544467899999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.01  E-value=0.00033  Score=63.95  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|+||+|||||++.|.+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHh
Confidence            34699999999999999999999876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.00  E-value=0.00056  Score=62.63  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=37.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..+.  -|-++|++|+|||+||+.+.+..
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence            356899998888887777665  68899999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.00  E-value=0.0008  Score=60.23  Aligned_cols=27  Identities=30%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|+|++|+|||||++.+.+..
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            334599999999999999999999876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.00  E-value=0.00026  Score=57.89  Aligned_cols=24  Identities=38%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+|+|.|++|+|||||++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            359999999999999999999874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.99  E-value=0.0004  Score=59.61  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..+..+...+..+.  -+-++|+.|+||||||+.+.+..
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence            356899888888877776654  68899999999999999998865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.99  E-value=0.00049  Score=60.34  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|++|+|||||++.+.+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            399999999999999999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.99  E-value=0.00017  Score=67.22  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++++...+..++  +++|+|++|+|||||++.+.+-.
T Consensus       358 ~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          358 ALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            4445544455566  99999999999999999999865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.99  E-value=0.00047  Score=54.12  Aligned_cols=26  Identities=35%  Similarity=0.442  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.|+|++|+||||+++.+....
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.00065  Score=56.33  Aligned_cols=40  Identities=28%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++.++..+..     ....+|.|+|++|+||||+++.+....
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3445555444443     245789999999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.97  E-value=0.0005  Score=54.33  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +...+|+|.|+.|+||||+++.+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999998864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.97  E-value=0.00034  Score=55.92  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|+|++|+|||||++.+....
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3589999999999999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.96  E-value=0.0005  Score=62.66  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|++|+|||||++.|.+-.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            599999999999999999999865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.96  E-value=0.00037  Score=58.48  Aligned_cols=46  Identities=28%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CcceecHHHHHHHHHHhc---CC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE---GE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~---~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+.....+.....   ..         -..=+.|+|++|+|||||++.|++..
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence            356787766555544332   10         01128999999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.95  E-value=0.00081  Score=64.35  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..+..+...|......-+-|+|+.|+||||||+.+.+..
T Consensus       186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999987655578899999999999999998765

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.92  E-value=0.00074  Score=58.94  Aligned_cols=46  Identities=24%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|...+..            ...+-|-|+|+.|+||||||+.+++..
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            3578998888888776621            122358899999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.91  E-value=0.0003  Score=58.39  Aligned_cols=46  Identities=24%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             CcceecHHHHHHHHHHhc---C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE---G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~---~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+...+.   .         ....-+-|+|+.|+||||||+.+++..
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            456888776666655443   1         112237799999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.90  E-value=0.00098  Score=56.51  Aligned_cols=39  Identities=31%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++++..+..     ....+|.|.|++|+|||||++.+....
T Consensus        14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345555444433     245789999999999999999998754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.90  E-value=0.00078  Score=61.85  Aligned_cols=36  Identities=28%  Similarity=0.279  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.+...+..+.  .|+|+|++|+|||||++.+.+..
T Consensus       249 ~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          249 VLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            4455555555565  69999999999999999999866

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.90  E-value=0.00069  Score=56.19  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=32.2

Q ss_pred             cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+.....+...+..  ....-|-|+|+.|+|||+||+.+++..
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            457887777777665532  222367799999999999999999865

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.89  E-value=0.00089  Score=58.99  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+..            ....-|-|+|+.|+|||+||+.|.+..
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            4679999999988887721            123578999999999999999998865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.88  E-value=0.0012  Score=55.11  Aligned_cols=45  Identities=20%  Similarity=0.126  Sum_probs=32.8

Q ss_pred             cceecHHHHHHHHH-------Hhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWR-------CLE---GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~-------~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|....++.+..       .+.   .....-+-|+|+.|+||||||+.+++..
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            45666555555544       332   3455688999999999999999999865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.87  E-value=0.001  Score=56.83  Aligned_cols=46  Identities=15%  Similarity=0.089  Sum_probs=38.7

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+.....+..++..+.. ..+-+.|+.|+||||+|+.+.+..
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4678999999999999987643 466777889999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.87  E-value=0.0014  Score=56.07  Aligned_cols=38  Identities=34%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+...+...  ....+-|+|++|+||||||+.+++..
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            344444544443  34579999999999999999999876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.87  E-value=0.001  Score=57.89  Aligned_cols=45  Identities=22%  Similarity=0.219  Sum_probs=35.5

Q ss_pred             cceecHHHHHHHHHHhc-------------C--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE-------------G--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~-------------~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..++.+...+.             .  .....|-++|+.|+||||||+.|.+..
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            35888888888877762             1  133568999999999999999999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.86  E-value=0.00049  Score=64.10  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.+.+-.
T Consensus       368 ~G~--~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGK--TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTC--EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence            345  99999999999999999999865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.85  E-value=0.001  Score=59.90  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=36.6

Q ss_pred             CcceecHHHHHHHHHHhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|...+.            ....+-|-|+|+.|+||||||+.+++..
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            457899988888877662            1133578999999999999999999865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.85  E-value=0.00083  Score=59.33  Aligned_cols=25  Identities=24%  Similarity=0.049  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.+.+..
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3499999999999999999999854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00058  Score=64.01  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPT  213 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~  213 (238)
                      .+++|+|+||+|||||++.|.+-..+..+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            47999999999999999999987633333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.82  E-value=0.00049  Score=58.79  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.6

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|+|+|++|+|||||++.+++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5699999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.81  E-value=0.00072  Score=53.08  Aligned_cols=25  Identities=32%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|.|+.|+||||+++.+....
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999997654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.81  E-value=0.0018  Score=52.97  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|.|+.|+||||+++.+.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999987

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.81  E-value=0.00068  Score=51.92  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.81  E-value=0.00062  Score=58.10  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+||||++..+....
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34599999999999999999998766

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.80  E-value=0.0006  Score=53.12  Aligned_cols=24  Identities=42%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|+|+.|+||||+++.+....
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.77  E-value=0.0023  Score=55.73  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhc--cCCCCC-CEEEEEEeCCCCCHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFL--ESPTNF-NYVIWVVMSKDSRLE  230 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~--~v~~~F-d~~~wV~vs~~~~~~  230 (238)
                      -.++.|+|++|+|||||++.++....  +..+.. ..++|+.....+...
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~  180 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE  180 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence            34999999999999999999988641  111111 245888765544333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.76  E-value=0.0012  Score=58.00  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++|...+ .+.  +++|+|++|+|||||++.+.+..
T Consensus       207 ~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          207 KPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             HHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             HHHHHhc-CCC--EEEEECCCCccHHHHHHHHhccc
Confidence            3344433 445  89999999999999999999866

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.76  E-value=0.00034  Score=55.56  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+|||||++.+.+..
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998743

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.76  E-value=0.00082  Score=52.89  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|.|+.|+||||+++.+....
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.75  E-value=0.0007  Score=62.22  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             HHHHHHHH-HhcCCcceEEEEEecCCCchhHHHHH--HHhhh
Q 046124          170 LQLEHVWR-CLEGESVGIVGLYGMGGVGKTTLLTH--INNKF  208 (238)
Q Consensus       170 ~~~~~l~~-~L~~~~~~vI~IvG~gGvGKTTLak~--i~~~~  208 (238)
                      ..++++.. -+..++  +++|+|+||+|||||++.  +.+-.
T Consensus        26 ~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           26 EGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             TTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             hhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            45666655 556667  999999999999999999  44544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.75  E-value=0.00076  Score=59.40  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.+.+..
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3489999999999999999998765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.75  E-value=0.0008  Score=52.87  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+|.|+|+.|+||||+++.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            348999999999999999999776

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.74  E-value=0.00083  Score=57.68  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+.....+...+......-|-|+|+.|+||||||+.+.+..
T Consensus        25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence            568888766655444443333348899999999999999999866

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.74  E-value=0.00094  Score=52.10  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+|.|.|+.|+||||+++.+...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999988653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.73  E-value=0.0012  Score=56.30  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|....+..+...+..  ....-|-|+|+.|+|||+||+.|++..
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            467888888877776643  223357799999999999999999865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.72  E-value=0.00084  Score=52.13  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.72  E-value=0.00092  Score=57.36  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+||||++..+....
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            34699999999999999999998876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.72  E-value=0.00096  Score=52.93  Aligned_cols=26  Identities=23%  Similarity=0.393  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|.|+.|+||||+++.+....
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.71  E-value=0.00066  Score=63.47  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=21.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            99999999999999999999865

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.70  E-value=0.0017  Score=56.79  Aligned_cols=46  Identities=20%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             CcceecHHHHHHHHHHhcC------------------------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG------------------------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~------------------------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..                              .....|-++|+.|+||||||+.+.+..
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            3568888888877766520                              122468899999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.70  E-value=0.0014  Score=56.01  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++++...+. +.  +++|+|++|+|||||++.+. ..
T Consensus       156 i~~L~~~l~-G~--i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          156 IDELVDYLE-GF--ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHHHHHTT-TC--EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HHHHHhhcc-Cc--EEEEECCCCCCHHHHHHHHH-Hh
Confidence            344444443 34  89999999999999999998 54

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.70  E-value=0.00098  Score=50.90  Aligned_cols=21  Identities=43%  Similarity=0.615  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .+..|+|+||+|||||+..|+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999886

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0019  Score=58.13  Aligned_cols=45  Identities=29%  Similarity=0.380  Sum_probs=35.0

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|...+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            56788887777765543    1         134678999999999999999999976

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.66  E-value=0.00094  Score=56.03  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  ++.|+|++|+|||||+..+....
T Consensus        28 ~~G~--i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGT--VGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence            3445  99999999999999999998755

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.65  E-value=0.002  Score=57.94  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+........ ..-+.|+|++|+||||||+.|++..
T Consensus       117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            344444444332 5689999999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.65  E-value=0.00088  Score=65.83  Aligned_cols=26  Identities=38%  Similarity=0.612  Sum_probs=22.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +..++  +++|+|+||+|||||++.|.+
T Consensus       458 I~~Ge--~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          458 LKRAR--RYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EETTC--EEEEECSTTSSHHHHHHHHHH
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhC
Confidence            33456  999999999999999999985

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.65  E-value=0.0017  Score=60.07  Aligned_cols=45  Identities=31%  Similarity=0.350  Sum_probs=34.0

Q ss_pred             cceecHHHHHHHHHHhc------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|.+.....+...+.      ......+.++|++|+||||||+.|.+..
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            46888877766644332      1234589999999999999999999866

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.64  E-value=0.0011  Score=53.14  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.|+|+.|+||||+++.+.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.64  E-value=0.0011  Score=51.05  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|.|+.|+||||+++.+....
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.63  E-value=0.00085  Score=65.93  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|+||+|||||++.|.+..
T Consensus       698 ~Ge--ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          698 LSS--RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             TTC--EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            345  99999999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.62  E-value=0.0012  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|+.|+|||||+..+....
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999988754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0015  Score=58.63  Aligned_cols=45  Identities=27%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|.+.+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            56788888888766542    1         135678999999999999999999976

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.62  E-value=0.0025  Score=57.41  Aligned_cols=46  Identities=26%  Similarity=0.265  Sum_probs=35.3

Q ss_pred             CcceecHHHHHHHH---HHhcCC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVW---RCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~---~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+.   ..+..+  ..+-+-++|++|+||||||+.+.+..
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            46789988777554   344443  23468899999999999999999977

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.62  E-value=0.0012  Score=52.02  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++|+|+.|+|||||++.+....
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4589999999999999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.60  E-value=0.00055  Score=63.68  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.+.+-.
T Consensus       366 ~G~--~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGE--TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTC--EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCC--EEEEECCCCChHHHHHHHHhcCC
Confidence            445  99999999999999999999865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.60  E-value=0.0012  Score=52.44  Aligned_cols=25  Identities=32%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|+|+.|+||||+++.+....
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.60  E-value=0.0012  Score=51.03  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.58  E-value=0.0014  Score=50.48  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             HHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHh
Q 046124          172 LEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       172 ~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +..+...+.. .....|+|+|..|+|||||++.+.+
T Consensus         5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A            5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence            3444444444 5667999999999999999999874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0017  Score=58.20  Aligned_cols=45  Identities=33%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|...+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            56788888877766543    1         134558899999999999999999976

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.57  E-value=0.0017  Score=59.02  Aligned_cols=46  Identities=22%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CcceecHHHHHHHHHHh---cCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCL---EGE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L---~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.+...+   ...         -..-|.|+|++|+||||||+.|.+..
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            35788887766665443   221         12347899999999999999999876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.57  E-value=0.0013  Score=52.32  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|.|+.|+||||+++.+....
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.53  E-value=0.0014  Score=53.20  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|.|+.|+||||+++.+...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.53  E-value=0.0013  Score=54.14  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+|+|.|+.|+||||+++.|...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.53  E-value=0.0014  Score=52.12  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|.|+.|+||||+++.+....
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.53  E-value=0.0013  Score=55.77  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..+-++|++|+|||+||+.|++..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578889999999999999999876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.002  Score=57.27  Aligned_cols=45  Identities=31%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|.+.+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            45678888777766543    1         134568899999999999999999976

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.53  E-value=0.0015  Score=49.03  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|+|..|+|||||++.+.+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.52  E-value=0.0015  Score=53.92  Aligned_cols=27  Identities=19%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|.|+.|+||||+++.+....
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999997754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.51  E-value=0.0023  Score=58.55  Aligned_cols=46  Identities=28%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             CcceecHHHHHHHHHH---hcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRC---LEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..+..+...   +.+.         -..=|.|+|++|+||||||+.|++..
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4678888766665443   3221         11238999999999999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.50  E-value=0.0013  Score=56.12  Aligned_cols=23  Identities=43%  Similarity=0.733  Sum_probs=21.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            89999999999999999998865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.50  E-value=0.00086  Score=62.53  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.+.+-.
T Consensus       368 ~Ge--~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGS--LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTC--EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence            345  99999999999999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.47  E-value=0.0012  Score=59.17  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|+|+|++|+|||||++.+++..
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46999999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.46  E-value=0.0017  Score=51.81  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...+|+|.|+.|+||||+++.+...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4579999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.46  E-value=0.0028  Score=56.80  Aligned_cols=43  Identities=35%  Similarity=0.401  Sum_probs=34.0

Q ss_pred             eecHHHHHHHHHHhcC-----------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEG-----------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~-----------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.++.++.+...+.+           ++...|+|+|.+|+|||||++.+.+..
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            5777778887776641           134689999999999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.45  E-value=0.0033  Score=48.84  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..+.. +.......|.|+|..|+|||||++.+.+.
T Consensus         5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A            5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            344555 44566678999999999999999999853

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.45  E-value=0.0016  Score=53.13  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+||||+++.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34589999999999999999987643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.43  E-value=0.0019  Score=52.63  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++|-|.|++|+||||.|+.|....
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.43  E-value=0.0022  Score=49.87  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=22.9

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .....|+|+|.+|+|||||++.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45578999999999999999999865

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.43  E-value=0.0019  Score=58.15  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=35.8

Q ss_pred             CcceecHHHHHHHHHHhcC--------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG--------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..              -..+-|-++|+.|+||||||+.+.+..
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence            4678988888887655521              123568999999999999999999876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.42  E-value=0.0019  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.++|.+|+|||||++.+.+..
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            369999999999999999997654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.37  E-value=0.002  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            4579999999999999999998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.37  E-value=0.0021  Score=55.46  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|++|+||||++..+....
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35699999999999999999998766

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.36  E-value=0.0008  Score=59.54  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|+||+|||||++.|+.-.
T Consensus        61 G~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           61 GFCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             SEEEEEESHHHHHHHHTHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            399999999999999999997644

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0032  Score=56.92  Aligned_cols=45  Identities=29%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|.+.+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            56788888887766542    1         245678899999999999999999976

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.35  E-value=0.0043  Score=54.03  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=28.2

Q ss_pred             HHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+...+.  .+...+|+|+|.+|+|||||+..+....
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            444444444  3467799999999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.35  E-value=0.0022  Score=50.85  Aligned_cols=41  Identities=24%  Similarity=0.139  Sum_probs=22.1

Q ss_pred             cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .....+.+.........-.|.|+|..|+|||||++.+.+..
T Consensus        14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence            33444444444445566789999999999999999888643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.35  E-value=0.002  Score=54.92  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|.+|+|||||++.+.+..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4589999999999999999998763

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.34  E-value=0.002  Score=55.75  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .++.+|+|+||+|||||+..|+-
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999998753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.34  E-value=0.002  Score=56.45  Aligned_cols=22  Identities=45%  Similarity=0.807  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+.+|+|+||+|||||+..|+.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4999999999999999999985

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.33  E-value=0.0029  Score=49.99  Aligned_cols=26  Identities=31%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .....|+|+|.+|+|||||++.+.+.
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34457999999999999999999763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.33  E-value=0.002  Score=54.32  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=21.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ...+|+|.|+.|+||||+++.+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999987

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.33  E-value=0.011  Score=52.43  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhc-c-C-CCCCCEEEEEEeCCCCCHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFL-E-S-PTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~-~-v-~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      .++.|+|++|+|||||+..++-... + . .+.-..++|+.....++...+
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl  229 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL  229 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence            3999999999999999997652210 1 0 112346788876666655443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.32  E-value=0.0021  Score=54.73  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+||||++..+....
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4599999999999999999998876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.32  E-value=0.0039  Score=56.86  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..+..+..++..             ....-|-|+|+.|+|||+||+.|.+..
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            568888888888776641             233468899999999999999998865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.32  E-value=0.0022  Score=55.90  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+|||||++.+.+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5699999999999999999998743

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.31  E-value=0.025  Score=49.41  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL  229 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~  229 (238)
                      -.++.|+|++|+|||||+..+....... +  ..++|++....++.
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~-g--g~VlyId~E~s~~~  103 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKM-G--GVAAFIDAEHALDP  103 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEEecccccch
Confidence            3599999999999999999998765221 1  23577766555553

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0022  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.30  E-value=0.0024  Score=52.62  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=23.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.|.|+.|+||||+++.+....
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56689999999999999999998755

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.29  E-value=0.0017  Score=60.20  Aligned_cols=24  Identities=29%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|+|++|+|||||++.|.+..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh
Confidence            499999999999999999999876

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.28  E-value=0.00086  Score=57.60  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.3

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            99999999999999999998754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.27  E-value=0.0003  Score=57.85  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|+.-.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67899999999999999998866

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.26  E-value=0.0025  Score=47.91  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|..|+|||||++.+.+..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            3579999999999999999998654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.25  E-value=0.0025  Score=49.47  Aligned_cols=25  Identities=40%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            4589999999999999999888754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.24  E-value=0.0024  Score=55.39  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|+|+|++|+|||||++.+.+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            455699999999999999999997643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.24  E-value=0.0019  Score=55.52  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .+.+|+|+||+|||||+..|+
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHH
Confidence            389999999999999999998

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.24  E-value=0.0028  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|..|+|||||++.+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.23  E-value=0.0026  Score=50.97  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ..+..|+|+||+||||++..|+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            3589999999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.23  E-value=0.0022  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|+|+|..|+|||||++.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            47999999999999999998653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.22  E-value=0.0026  Score=49.36  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|+|.+|+|||||++.+.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            479999999999999999998753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.22  E-value=0.0013  Score=61.53  Aligned_cols=26  Identities=15%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++..|+|+|++|+|||||++.|.+-.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCC
Confidence            45679999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.22  E-value=0.0027  Score=48.08  Aligned_cols=25  Identities=36%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-.|.|+|..|+|||||++.+.+..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4589999999999999999998653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.20  E-value=0.0028  Score=47.93  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-.|.|+|..|+|||||++.+.+..
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3579999999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.18  E-value=0.0026  Score=55.72  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.2

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ++..|+|+||+|||||+..|+
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999987

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.18  E-value=0.003  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|+|+|..|+|||||++.+.+..
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            479999999999999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.17  E-value=0.0029  Score=48.35  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            45689999999999999999987653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.16  E-value=0.0027  Score=51.73  Aligned_cols=26  Identities=27%  Similarity=0.190  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|.+|+|||||++.+.+..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999999864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.0042  Score=55.68  Aligned_cols=45  Identities=31%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.++.++.|.+.+.    .         ..++=|-++||+|+|||+||+.|.++.
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence            45677877777765442    1         134579999999999999999999876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.16  E-value=0.003  Score=48.98  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            4589999999999999999998753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.16  E-value=0.0031  Score=48.17  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc
Confidence            34689999999999999999998763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.16  E-value=0.003  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|.|+|..|+|||||++.+.+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            469999999999999999987543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.15  E-value=0.0052  Score=55.18  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.++|++|+||||++..+....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.15  E-value=0.0031  Score=47.33  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|+|+|..|+|||||++.+.+..
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            479999999999999999987653

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.15  E-value=0.0025  Score=56.95  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|+||+|||||+..|+.-.
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhh
Confidence            489999999999999999998644

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.14  E-value=0.0031  Score=54.84  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|+|.|+.|+|||||++.+....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            489999999999999999988764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.13  E-value=0.0032  Score=48.12  Aligned_cols=25  Identities=36%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|..|+|||||++.+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.13  E-value=0.0033  Score=49.29  Aligned_cols=25  Identities=36%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|.+|+|||||++.+.+.
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.13  E-value=0.0037  Score=47.21  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|+|+|..|+|||||++.+.+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.12  E-value=0.0033  Score=48.75  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4579999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.10  E-value=0.0032  Score=51.23  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|.|+.|+||||+++.+....
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.09  E-value=0.0034  Score=47.95  Aligned_cols=25  Identities=36%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|..|+|||||++.+.+..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4579999999999999999998653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.09  E-value=0.02  Score=49.63  Aligned_cols=50  Identities=18%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      -.++.|+|++|+|||||+..+.... ....    .=..++|++....++...+.+
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~  175 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD  175 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence            3499999999999999999988753 1111    224688998888777665543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.09  E-value=0.013  Score=50.04  Aligned_cols=56  Identities=11%  Similarity=0.073  Sum_probs=36.4

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      ++.+..-+..++  ++-|.|.+|+|||||+..+.... ...+  ..++|++.-  .+...+..
T Consensus        58 LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~  113 (315)
T 3bh0_A           58 LDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIK  113 (315)
T ss_dssp             HHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHH
T ss_pred             HHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHH
Confidence            444443344455  89999999999999999987655 2223  567777643  44444443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.09  E-value=0.0069  Score=53.71  Aligned_cols=42  Identities=14%  Similarity=0.118  Sum_probs=29.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      .+++|+|+.|+|||||++.|.+........++++ .+-+.+..
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~  216 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP  216 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence            3999999999999999999877541112344443 46676654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.09  E-value=0.0072  Score=54.37  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=23.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.+|.++|++|+||||++..+....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998766

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.08  E-value=0.0027  Score=48.53  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.07  E-value=0.0032  Score=55.81  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+|+|+|++|+|||||.+.+.+.
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            48999999999999999999984

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.07  E-value=0.0034  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.06  E-value=0.0036  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|+|+|..|+|||||++.+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.06  E-value=0.0024  Score=60.33  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             hcCCcceEEEEEecCCCchhHHH
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLL  201 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLa  201 (238)
                      +..++  +++|+|+||+|||||+
T Consensus        41 i~~Ge--~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           41 IPRGK--LVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EETTS--EEEEECSTTSSHHHHH
T ss_pred             ECCCC--EEEEECCCCCCHHHHh
Confidence            33456  9999999999999997

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.05  E-value=0.0039  Score=47.62  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            457999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.04  E-value=0.0039  Score=49.63  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|+.|+|||||++.+.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.04  E-value=0.0037  Score=47.33  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999997643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.04  E-value=0.0037  Score=47.63  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            35689999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.03  E-value=0.0039  Score=48.06  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            34589999999999999999998754

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.02  E-value=0.02  Score=49.11  Aligned_cols=48  Identities=21%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      .++.|+|++|+|||||+..+.... ....    .=..++|++....++...+.
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~  159 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE  159 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH
Confidence            499999999999999999988754 1110    12467899888777666554

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.02  E-value=0.004  Score=47.47  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|+|..|+|||||++.+.+..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            579999999999999999998643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.02  E-value=0.0019  Score=61.02  Aligned_cols=20  Identities=35%  Similarity=0.660  Sum_probs=18.2

Q ss_pred             EEEEEecCCCchhHHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~  205 (238)
                      +++|+|+||+|||||++.+.
T Consensus       350 ~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          350 FVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTTH
T ss_pred             EEEEEeeCCCCHHHHHHHHH
Confidence            99999999999999998653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.00  E-value=0.0055  Score=52.35  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCC---cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGE---SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~---~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+..+..++...   ...-+-|+|+.|+|||+||+.+++..
T Consensus       135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3444555565531   23578899999999999999999876

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.00  E-value=0.0032  Score=60.45  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+++|+|+||+|||||++.|.+-
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhh
Confidence            49999999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.99  E-value=0.004  Score=47.95  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34589999999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.99  E-value=0.004  Score=47.79  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Confidence            4589999999999999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.98  E-value=0.004  Score=48.12  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .....|.|+|..|+|||||++.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.97  E-value=0.0039  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .++.|.|++|+|||||+..+...
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            39999999999999998776554

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.97  E-value=0.0032  Score=49.40  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=22.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .......|.|+|..|+|||||++.+.+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            344556899999999999999999975

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.96  E-value=0.0041  Score=48.47  Aligned_cols=26  Identities=42%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.96  E-value=0.0042  Score=47.94  Aligned_cols=26  Identities=27%  Similarity=0.236  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998743

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.95  E-value=0.0035  Score=60.56  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+++|+|+||+|||||+|.|.+-
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHH
Confidence            459999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.94  E-value=0.0042  Score=48.20  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-.|+|+|..|+|||||++.+.+..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            34579999999999999999998763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.93  E-value=0.0044  Score=47.45  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4579999999999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.92  E-value=0.0046  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ...|+|+|..|+|||||++.+.+
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999999884

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.92  E-value=0.0044  Score=48.71  Aligned_cols=26  Identities=38%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            35689999999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.0046  Score=48.29  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.0048  Score=48.10  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-.|.|+|..|+|||||++.+.+..
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34589999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.88  E-value=0.0044  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|+|..|+|||||++.+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999988775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.88  E-value=0.0039  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|+|..|+|||||++.+.+.
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.88  E-value=0.0047  Score=48.42  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence            34589999999999999999997653

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.88  E-value=0.0045  Score=53.20  Aligned_cols=27  Identities=30%  Similarity=0.706  Sum_probs=22.2

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..+||+|.|-||+||||.+-.+.--+
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aL   72 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAF   72 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHH
Confidence            356799999999999999988776544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.88  E-value=0.0048  Score=47.18  Aligned_cols=26  Identities=38%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34589999999999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.87  E-value=0.0043  Score=52.90  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+++|++|+||||++..+....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999999998765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.87  E-value=0.0048  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-.|.|+|..|+|||||++.+.+..
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCC
Confidence            4589999999999999998887643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.86  E-value=0.0049  Score=47.93  Aligned_cols=26  Identities=31%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            35689999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.85  E-value=0.0049  Score=48.42  Aligned_cols=23  Identities=39%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ...|+|+|.+|+|||||++.+.+
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.85  E-value=0.005  Score=47.18  Aligned_cols=25  Identities=32%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4579999999999999999987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.84  E-value=0.0052  Score=48.38  Aligned_cols=26  Identities=27%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            45689999999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.84  E-value=0.0063  Score=49.96  Aligned_cols=26  Identities=35%  Similarity=0.413  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++.+.|.+|+|||||+..+....
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35688999999999999999998665

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.84  E-value=0.0032  Score=49.64  Aligned_cols=24  Identities=38%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ....|+|+|.+|+|||||++.+.+
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999853

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.82  E-value=0.0074  Score=52.58  Aligned_cols=42  Identities=17%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL  229 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~  229 (238)
                      .++.|+|++|+|||||+..+....... +  ..++|++....++.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~-g--~~vlyi~~E~~~~~  103 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAA-G--GIAAFIDAEHALDP  103 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC-C--CeEEEEECCCCcCH
Confidence            499999999999999999987654221 1  24678877665554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.0051  Score=48.13  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .....|.|+|..|+|||||++.+.+..
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence            345689999999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.81  E-value=0.0052  Score=54.79  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.4

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+|.|+|+.|+||||+++.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            356799999999999999999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.81  E-value=0.0041  Score=63.10  Aligned_cols=28  Identities=21%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.+.+-.
T Consensus      1056 i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1056 VKKGQ--TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             ECSSS--EEEEECSSSTTHHHHHHHHTTSS
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCc
Confidence            33456  99999999999999999999855

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.80  E-value=0.024  Score=48.31  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC-CCCCCEEEEEEeCC-CCCHH
Q 046124          167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES-PTNFNYVIWVVMSK-DSRLE  230 (238)
Q Consensus       167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v-~~~Fd~~~wV~vs~-~~~~~  230 (238)
                      |.++..+.+...+..+.....-++|+.|+||||+|+.+.+..... ..+.+. .++..+. ...+.
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id   65 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGID   65 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHH
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHH
Confidence            445667788888877767789999999999999999997642111 123343 5555443 45443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.80  E-value=0.027  Score=48.00  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhc-c----------CCCCC--CEEEEEEeCCCCCHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFL-E----------SPTNF--NYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~-~----------v~~~F--d~~~wV~vs~~~~~~~i~~  234 (238)
                      -.++-|+|++|+|||||+..+..... .          ..+-.  ..++|++....++...+.+
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~  161 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ  161 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence            34999999999999999998876420 0          01111  4678998888777765553

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.79  E-value=0.01  Score=48.80  Aligned_cols=38  Identities=13%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      ...|.|.|+.|+||||+++.+.... .. ..+.......-
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~~-~~~~~~~~~re   64 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETL-QQ-NGIDHITRTRE   64 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHH-HH-TTCCCEEEEES
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCeeeeecC
Confidence            3589999999999999999999877 32 34553444433

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.79  E-value=0.0055  Score=48.77  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.79  E-value=0.0056  Score=47.67  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence            34589999999999999999998743

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.79  E-value=0.0054  Score=47.63  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4589999999999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0056  Score=48.60  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34589999999999999999987643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.77  E-value=0.0053  Score=48.19  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.77  E-value=0.0055  Score=48.62  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999988653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.76  E-value=0.0061  Score=49.12  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.76  E-value=0.0056  Score=47.75  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-.|.|+|..|+|||||++.+.+..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.76  E-value=0.0057  Score=47.59  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCC
Confidence            4589999999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.75  E-value=0.0057  Score=47.38  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3589999999999999999998753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.74  E-value=0.0047  Score=55.48  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+||||++..+....
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.74  E-value=0.0049  Score=48.03  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            35689999999999999999998754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.73  E-value=0.01  Score=54.24  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|.+|+|||||+..+....
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.72  E-value=0.0059  Score=47.58  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.72  E-value=0.0056  Score=56.14  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|+|++|+|||||++.+++..
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            399999999999999999999876

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.72  E-value=0.0057  Score=48.19  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            45689999999999999999987643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.69  E-value=0.0061  Score=47.05  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|+|..|+|||||++.+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.69  E-value=0.0064  Score=47.92  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.68  E-value=0.0063  Score=47.24  Aligned_cols=26  Identities=23%  Similarity=0.142  Sum_probs=22.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence            34589999999999999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.67  E-value=0.0062  Score=47.82  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            45689999999999999999998653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.66  E-value=0.0067  Score=48.01  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|..|+|||||++.+.+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.62  E-value=0.0064  Score=47.64  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3458999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.61  E-value=0.0065  Score=48.46  Aligned_cols=25  Identities=40%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3458999999999999999999864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.61  E-value=0.0083  Score=57.43  Aligned_cols=46  Identities=24%  Similarity=0.367  Sum_probs=36.3

Q ss_pred             CcceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+...         ....+-++|+.|+|||+||+.+.+..
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789998888887766521         12369999999999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.61  E-value=0.0053  Score=47.75  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.60  E-value=0.0067  Score=51.73  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|.+|+|||||++.+.+..
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45689999999999999999998864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.60  E-value=0.0072  Score=51.92  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|.|+||.|+|||||+..+....
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999999998765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.59  E-value=0.0046  Score=54.08  Aligned_cols=27  Identities=22%  Similarity=0.220  Sum_probs=22.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+-.-.|+|+|.+|+|||||++.+++.
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence            343456899999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.59  E-value=0.012  Score=47.65  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCC-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLEGE-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~~~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -...+..++.+- ...-+-|+||+|+||||+|..+.+..
T Consensus        44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            344555555431 22369999999999999999888765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.59  E-value=0.0071  Score=47.71  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=22.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34689999999999999999998653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.59  E-value=0.0057  Score=47.82  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4479999999999999999998653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.58  E-value=0.007  Score=51.58  Aligned_cols=25  Identities=36%  Similarity=0.511  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|.+|+|||||++.+.+..
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4579999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0077  Score=46.89  Aligned_cols=25  Identities=36%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.56  E-value=0.0049  Score=62.50  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=23.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++.+.+..
T Consensus       415 ~G~--~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          415 SGQ--TVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             TTC--EEEEECCSSSSHHHHHHHTTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence            455  99999999999999999998865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.55  E-value=0.015  Score=52.26  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.++|.+|+||||++-.+....
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999988665

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.53  E-value=0.0022  Score=50.64  Aligned_cols=29  Identities=28%  Similarity=0.227  Sum_probs=23.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +.....-.|+|+|..|+|||||++.+.+.
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            34455668999999999999999887653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.54  E-value=0.0079  Score=47.36  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|+|+|..|+|||||++.+.+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCc
Confidence            4589999999999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.54  E-value=0.015  Score=48.67  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            45689999999999999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.54  E-value=0.0037  Score=55.86  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|+|+|++|+|||||++.+.+.
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            47999999999999999999876

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.53  E-value=0.0074  Score=49.69  Aligned_cols=26  Identities=31%  Similarity=0.184  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.53  E-value=0.0076  Score=52.34  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|.|+||.|+|||||+..+....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            589999999999999999998765

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.52  E-value=0.0077  Score=53.92  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|++|+||||++..+....
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999998876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.52  E-value=0.0047  Score=49.26  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.50  E-value=0.0082  Score=47.36  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCC
Confidence            45689999999999999999997643

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.50  E-value=0.02  Score=51.41  Aligned_cols=41  Identities=24%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +....+..+...+..++ ..+.|.|++|+||||++..+....
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34556666666766654 389999999999999999998876

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.49  E-value=0.0049  Score=57.53  Aligned_cols=46  Identities=22%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcce-----------EEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVG-----------IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~-----------vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++|.+.....+...|..+...           -|-++|++|+|||+||+.+.+..
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            45688887777666555554211           48899999999999999998765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.46  E-value=0.0085  Score=49.22  Aligned_cols=25  Identities=36%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++||.|+.|+||||+++.|....
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999997754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0077  Score=48.48  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ....|.|+|.+|+|||||++.+.+
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.45  E-value=0.0088  Score=58.09  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             cceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+..+..+...+...         ....+-|+|+.|+|||+||+.+.+..
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588888888877666421         12578999999999999999998865

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.44  E-value=0.0052  Score=60.15  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ..+++|+||||+|||||++.|.
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHH
Confidence            4599999999999999999875

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.44  E-value=0.0048  Score=47.46  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=11.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEEEEECCCCC-------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34589999999999999999987653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.43  E-value=0.015  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55789999999999999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.41  E-value=0.0075  Score=52.84  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|.+|+|||||++.+.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            34579999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.41  E-value=0.0092  Score=47.20  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=21.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4579999999999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.41  E-value=0.008  Score=47.74  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.40  E-value=0.01  Score=57.17  Aligned_cols=45  Identities=24%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             cceecHHHHHHHHHHh----cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCL----EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|.+..++.|.+.+    ..         ..++=|-++|++|+||||||+.|.++.
T Consensus       205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4567776666665443    22         134578999999999999999999866

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.40  E-value=0.0056  Score=50.74  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|.|+.|+||||+++.+....
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45699999999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.38  E-value=0.0095  Score=46.13  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.0

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .....|.|+|..|+|||||++.+.+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            4567899999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.36  E-value=0.0093  Score=47.63  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC
Confidence            4589999999999999999987653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.36  E-value=0.0073  Score=59.23  Aligned_cols=21  Identities=19%  Similarity=0.085  Sum_probs=19.7

Q ss_pred             ceEEEEEecCCCchhHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHI  204 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i  204 (238)
                      ..+++|+|+||+|||||++.|
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            459999999999999999998

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.32  E-value=0.0079  Score=50.21  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|+|+|..|+|||||++.+++.
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.25  E-value=0.0083  Score=52.17  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|+|.+|+|||||++.+.+..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.24  E-value=0.019  Score=47.73  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.++|..|+|||||.+.+.+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.21  E-value=0.021  Score=54.50  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CcceecHHHHHHHHHHhcC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+..         .....+-++|+.|+|||+||+.+.+..
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            4578988888877766542         122478999999999999999999866

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=95.19  E-value=0.042  Score=49.76  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=40.5

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH-HHHHHHH
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL-ENIQETI  236 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~-~~i~~~I  236 (238)
                      +++.|.. ..-.+++|+|..|+|||||+..+.+..  .+.+-+.++++-+.+.... .++.+++
T Consensus       143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~  204 (482)
T 2ck3_D          143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEM  204 (482)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHH
T ss_pred             EEecccccccCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHh
Confidence            3455543 222399999999999999999987754  1234467788888877643 4555443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.14  E-value=0.0076  Score=61.29  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=23.9

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  .|||||+.|+|||||++++.+-.
T Consensus      1102 I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1102 VEPGQ--TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             ECTTC--EEEEECSTTSSTTSHHHHHTTSS
T ss_pred             ECCCC--EEEEECCCCChHHHHHHHHhcCc
Confidence            33456  99999999999999999998755

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.14  E-value=0.024  Score=47.74  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+++|.+|+|||||.+.+.+..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            44579999999999999999998754

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.11  E-value=0.013  Score=50.63  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +++-|+|++|+||||||..+...
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            46789999999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.11  E-value=0.02  Score=51.11  Aligned_cols=43  Identities=28%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             eecHHHHHHHHHHhcC-------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEG-------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~-------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.++.++.+...+.+       +....|+|+|..|+|||||++.+.+..
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            5777888888877752       245789999999999999999998754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.08  E-value=0.0099  Score=58.89  Aligned_cols=23  Identities=26%  Similarity=0.158  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+++|+|+||+|||||++.| +-
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HH
Confidence            369999999999999999998 53

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.012  Score=47.05  Aligned_cols=26  Identities=31%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.07  E-value=0.028  Score=57.22  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  .++|||+.|+|||||++++.+..
T Consensus       443 ~G~--~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          443 AGQ--TVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             TTC--EEEEEECSSSCHHHHHHHHTTSS
T ss_pred             CCc--EEEEEecCCCcHHHHHHHhcccc
Confidence            345  99999999999999999999866

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.04  E-value=0.015  Score=52.24  Aligned_cols=49  Identities=14%  Similarity=0.211  Sum_probs=32.9

Q ss_pred             HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      .++.+..-+..++  ++.|.|.+|+|||||+..+........+  ..++|++.
T Consensus       192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~  240 (454)
T 2r6a_A          192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSL  240 (454)
T ss_dssp             HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEES
T ss_pred             HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence            3455544444556  9999999999999999998876521111  24666654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.04  E-value=0.015  Score=47.03  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|.|+.|+||||+++.+....
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            489999999999999999987643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.01  E-value=0.02  Score=50.07  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL  229 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~  229 (238)
                      .++-|.|++|+||||||..+...... .+  ..++|++....++.
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~-~g--~~vlyid~E~s~~~  105 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQR-EG--KTCAFIDAEHALDP  105 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEeCCCCccH
Confidence            48999999999999999988765421 12  25788877665553

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.97  E-value=0.024  Score=47.21  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=26.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.|...+...- ..++++|.+|+|||||++.+.+..
T Consensus        88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A           88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence            344555554331 479999999999999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.97  E-value=0.0057  Score=47.93  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=5.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|+|..|+|||||++.+.+.
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEC-----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999988775

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.94  E-value=0.015  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .++..|+|+||.|||||+..|+
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999987

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.91  E-value=0.012  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|.|+.|+||||+++.+....
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999877

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.90  E-value=0.015  Score=49.05  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            45689999999999999999998754

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.90  E-value=0.032  Score=49.46  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=34.5

Q ss_pred             HHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          174 HVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       174 ~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      .+++.+.. +.-.+++|+|..|+|||||+..|.+........+.| +.+-+.+..
T Consensus       164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~  217 (427)
T 3l0o_A          164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP  217 (427)
T ss_dssp             HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred             hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence            45566654 233499999999999999999988754111233444 456666543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.90  E-value=0.017  Score=46.15  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+|+|.|+.|+||||+++.+...
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~   29 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEH   29 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999988653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=94.86  E-value=0.02  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.|+|.+|+|||+|+..+.+.
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCcCHHHHHHHHHhC
Confidence            37999999999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.83  E-value=0.012  Score=46.97  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCchhHHHHH-HHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTH-INNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~-i~~~  207 (238)
                      ...|.|+|..|+|||||++. +.+.
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            45899999999999999998 5444

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.80  E-value=0.0061  Score=48.48  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=21.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|..|+|||||++.+.+.
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999998854

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.77  E-value=0.014  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|+|+|.+|+|||||.+.+.+.
T Consensus        23 ~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999876

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.71  E-value=0.029  Score=50.75  Aligned_cols=40  Identities=23%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      +++|+|+.|+|||||++.+.+.. .. ..-+.++++-+.+..
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGert  192 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERT  192 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCH
T ss_pred             EEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCc
Confidence            79999999999999999988764 11 122455667776665

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.67  E-value=0.021  Score=46.58  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=23.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|.|+.|+||||+++.+....
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999876

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.65  E-value=0.026  Score=45.85  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHH
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      -.+++..+..++  .+.|+|+.|+||||++..+.
T Consensus        66 q~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           66 ESEILEAISQNS--VVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHH
Confidence            444555555565  89999999999999777654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=94.62  E-value=0.019  Score=49.88  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .+..|+|+|..|+|||||++.+.+.
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3558999999999999999999985

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.61  E-value=0.033  Score=47.86  Aligned_cols=40  Identities=10%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          169 QLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+.+...+..+.. ..+-++|+.|+||||+|+.+....
T Consensus         8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l   48 (334)
T 1a5t_A            8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence            4566777777777653 468999999999999999988765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.60  E-value=0.02  Score=52.59  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.++|+.|+||||+++.+....
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999997654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.56  E-value=0.03  Score=51.22  Aligned_cols=41  Identities=10%  Similarity=-0.070  Sum_probs=29.8

Q ss_pred             cHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+..+.+.....  .....+|.+.|+.|+||||+++.+....
T Consensus       377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L  419 (511)
T 1g8f_A          377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF  419 (511)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence            3344444444441  2344689999999999999999999987

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.56  E-value=0.022  Score=45.85  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.|.|+.|+||||||..+....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            479999999999999999997643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.53  E-value=0.02  Score=51.70  Aligned_cols=26  Identities=15%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.++|+.|+||||+++.+....
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44589999999999999999998765

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.50  E-value=0.076  Score=48.30  Aligned_cols=59  Identities=22%  Similarity=0.350  Sum_probs=41.0

Q ss_pred             HHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 046124          176 WRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR-LENIQETI  236 (238)
Q Consensus       176 ~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~-~~~i~~~I  236 (238)
                      ++.|.. ..-.+++|+|..|+|||||+..+.+..  .+.+-+.++++-+.+... +.++.+++
T Consensus       156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~  216 (498)
T 1fx0_B          156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEM  216 (498)
T ss_dssp             HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHH
T ss_pred             eeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhh
Confidence            444443 223389999999999999999888754  123457888888888774 34555544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.31  E-value=0.051  Score=47.10  Aligned_cols=58  Identities=16%  Similarity=0.083  Sum_probs=37.6

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ++.+..-+..++  ++.|.|.+|+|||||+..+.... ...+  ..++|++  -+.+...+...+
T Consensus        36 LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~-a~~g--~~Vl~fS--lEms~~ql~~Rl   93 (338)
T 4a1f_A           36 LDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSA-LNDD--RGVAVFS--LEMSAEQLALRA   93 (338)
T ss_dssp             HHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHH-HHTT--CEEEEEE--SSSCHHHHHHHH
T ss_pred             HHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEe--CCCCHHHHHHHH
Confidence            444444444556  89999999999999999988765 2211  2455554  455566555544

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=94.29  E-value=0.0091  Score=57.89  Aligned_cols=21  Identities=29%  Similarity=0.669  Sum_probs=19.0

Q ss_pred             EEEEEecCCCchhHHHHH-HHh
Q 046124          186 IVGLYGMGGVGKTTLLTH-INN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~-i~~  206 (238)
                      +++|+|++|+|||||++. +++
T Consensus       525 iv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          525 MTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             EEEEECCTTSSHHHHCCCCCHH
T ss_pred             EEEEEcCCCcCHHHHHHHHHHH
Confidence            999999999999999996 553

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.24  E-value=0.034  Score=48.71  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-+.|+|+.|+|||||++.+....
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            358999999999999999998765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.17  E-value=0.12  Score=44.62  Aligned_cols=45  Identities=9%  Similarity=0.013  Sum_probs=31.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLE  230 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~  230 (238)
                      .++-|.|+.|+|||||+-.+...... .+.=..++||+....++..
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~   73 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA   73 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH
Confidence            37899999999999998877655421 1111367888877766654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.14  E-value=0.043  Score=48.06  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL  229 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~  229 (238)
                      .++-|.|++|+|||||+..+...... .+  ..++|++....++.
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~-~g--~~vlyi~~E~s~~~  116 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQK-AG--GTCAFIDAEHALDP  116 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHH-CC--CeEEEEECCCChhH
Confidence            48999999999999999888765411 12  25788887766554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.07  E-value=0.022  Score=51.19  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|.+|+|||||.+.+.+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4589999999999999999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.01  E-value=0.0069  Score=47.56  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999988754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.00  E-value=0.07  Score=44.69  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..-+..+|...  ...-|-++||+|+|||+||+.|.+.
T Consensus        90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            34456666543  2346999999999999999999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.98  E-value=0.032  Score=48.85  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             cceEEEEEecCCCchhHHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHI  204 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i  204 (238)
                      ....|-|+|.||+||||++|.+
T Consensus        32 ~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHH
Confidence            4568999999999999999985

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=93.97  E-value=0.032  Score=52.76  Aligned_cols=25  Identities=40%  Similarity=0.488  Sum_probs=22.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+|+|.+|+|||||++.+.+.
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~   32 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYK   32 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHh
Confidence            4568999999999999999999843

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=93.82  E-value=0.042  Score=44.71  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=22.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|-|+.|+||||+++.+....
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            34699999999999999999887653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.78  E-value=0.043  Score=47.53  Aligned_cols=39  Identities=10%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++++.+.|..      .+...|+|+|..|+|||||++.+.+..
T Consensus        11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            455566655542      246789999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=93.76  E-value=0.064  Score=46.89  Aligned_cols=39  Identities=33%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|.+..++.+..++..   ..|+++|..|+|||||.+.+.+.
T Consensus       147 ~gi~~L~~~I~~~~~~---~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          147 IGMAKVMEAINRYREG---GDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             BTHHHHHHHHHHHHTT---SCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhccc---CcEEEEcCCCCchHHHHHHHHhh
Confidence            5666666666655433   36999999999999999999986

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.73  E-value=0.04  Score=45.09  Aligned_cols=22  Identities=32%  Similarity=0.182  Sum_probs=17.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      -.|-+.|+||+||||++-.+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~   28 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAH   28 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            4688899999999999766543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=93.73  E-value=0.042  Score=44.14  Aligned_cols=26  Identities=12%  Similarity=0.169  Sum_probs=22.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|+|.|+.|+||+|.|+.+-+..
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHc
Confidence            34599999999999999999987644

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.71  E-value=0.053  Score=50.35  Aligned_cols=26  Identities=15%  Similarity=0.102  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.|.|+.|+||||+|+.+....
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.69  E-value=0.026  Score=48.52  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|.|+|..|+|||||++.+.+.
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSS
T ss_pred             CcceEEEECCCCccHHHHHHHHhCC
Confidence            3458999999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.68  E-value=0.039  Score=51.80  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.|.|+.|+||||+++.+....
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=93.65  E-value=0.081  Score=48.42  Aligned_cols=26  Identities=35%  Similarity=0.338  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..-.|+++|.+|+|||||++.+.+..
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=93.61  E-value=0.054  Score=48.73  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=24.5

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..+.+|+|+|+..+|||||++.+.+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            457899999999999999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=93.60  E-value=0.018  Score=52.69  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+.+|+|.||+|||||+..|+--
T Consensus        60 ~g~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           60 GGFCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CSEEEEEESHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHH
Confidence            359999999999999999999643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=93.57  E-value=0.016  Score=56.88  Aligned_cols=19  Identities=37%  Similarity=0.747  Sum_probs=18.1

Q ss_pred             EEEEEecCCCchhHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHI  204 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i  204 (238)
                      +++|+|++|+|||||++.+
T Consensus       652 iv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          652 FVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             EEECCBCTTSSHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            9999999999999999985

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=93.50  E-value=0.074  Score=49.04  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+|.+.|+.|+||||+++.+....
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998765

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=93.48  E-value=0.063  Score=50.03  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.8

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +....+|+|+|+.|+|||||++.+.+..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            4567899999999999999999998864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.47  E-value=0.068  Score=49.61  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=25.3

Q ss_pred             HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+..+....  ++.|.|++|+||||++..+....
T Consensus       196 ~Av~~~~~~~--~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          196 SVLDQLAGHR--LVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             HHHHHHTTCS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence            3344444444  88999999999999999998765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.42  E-value=0.083  Score=46.18  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.+..++.+..++..   ..|+++|..|+|||||.+.+.+..
T Consensus       145 ~gi~~L~~~l~~~~~~---~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          145 QGIAELADAIEYYRGG---KDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TTHHHHHHHHHHHHTT---SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             cCHHHHHhhhhhhccc---ceEEEecCCCCChhHHHHHHHhhh
Confidence            4666666666555432   379999999999999999999863

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.37  E-value=0.051  Score=48.60  Aligned_cols=57  Identities=14%  Similarity=0.040  Sum_probs=34.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      ++.++.-+..++  ++.|.|.+|+|||||+..+........+  ..++|++.  +.+...+..
T Consensus       190 LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl--E~~~~~l~~  246 (444)
T 2q6t_A          190 LDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL--EMPAAQLTL  246 (444)
T ss_dssp             HHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES--SSCHHHHHH
T ss_pred             hhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC--CCCHHHHHH
Confidence            344443333445  8999999999999999998876521111  24666654  333444433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=93.37  E-value=0.045  Score=45.05  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             ceEEEEEecC---------CCchhHHHHHHHh
Q 046124          184 VGIVGLYGMG---------GVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~g---------GvGKTTLak~i~~  206 (238)
                      .-.|+|+|..         |+|||||++.+.+
T Consensus        19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             eeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3589999999         9999999999987

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=93.35  E-value=0.048  Score=45.97  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|.|+|..|+|||||++.+.+..
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~  179 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA  179 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC
Confidence            44689999999999999999887643

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=93.28  E-value=0.11  Score=47.98  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC-CHHHHHHH
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS-RLENIQET  235 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~-~~~~i~~~  235 (238)
                      +++.|.. ..-.+++|.|..|+|||+|+..|.+..     +-+.++++-+.+.. .+.++.++
T Consensus       222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~  279 (600)
T 3vr4_A          222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE  279 (600)
T ss_dssp             HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred             hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence            3455543 223399999999999999999998854     23577888777663 34455444

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=93.22  E-value=0.045  Score=44.19  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      ...-||+.|.-|+||||+++.+..
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998754

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=93.15  E-value=0.14  Score=47.30  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH-HHHHHH
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL-ENIQET  235 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~-~~i~~~  235 (238)
                      +++.|.. ..-.+++|+|..|+|||||+..|.+..     +-+.++++-+.+..+. .++.++
T Consensus       217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~  274 (588)
T 3mfy_A          217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEE  274 (588)
T ss_dssp             HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred             hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence            4455543 223399999999999999999998753     2357888888877654 355444

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=92.96  E-value=0.059  Score=49.77  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=22.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|+|+|..|+|||||++.+.+..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4589999999999999999998864

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=92.91  E-value=0.065  Score=46.35  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|-|+-|+||||+++.+....
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L   31 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAA   31 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999876

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.86  E-value=0.061  Score=48.58  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|+|+|..|+|||||++.+.+..
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            369999999999999999998764

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=92.63  E-value=0.076  Score=46.33  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             cceEEEEEe-cCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYG-MGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG-~gGvGKTTLak~i~~~~  208 (238)
                      ..++|+|+| .||+||||++-.+....
T Consensus       142 ~~kvIav~s~KGGvGKTT~a~nLA~~L  168 (373)
T 3fkq_A          142 KSSVVIFTSPCGGVGTSTVAAACAIAH  168 (373)
T ss_dssp             SCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHHH
Confidence            578999996 89999999998887654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=92.62  E-value=0.073  Score=48.90  Aligned_cols=25  Identities=16%  Similarity=0.102  Sum_probs=22.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+.|+|+|..|+|||||+..+...
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            4578999999999999999999763

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.61  E-value=0.15  Score=47.60  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      ...|.|++|+||||++..+......   .-...+.++..-+..+..+...+
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l  244 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKI  244 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT---SSSCCEEEEESSHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCcHHHHHHHHHHH
Confidence            6789999999999988777655411   12346777777666666666554

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.59  E-value=0.071  Score=42.92  Aligned_cols=21  Identities=38%  Similarity=0.376  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      .++-|.|.+|+|||||+-.+.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            489999999999999998754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=92.59  E-value=0.072  Score=48.93  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ..+.|+|+|..|+|||||+..+.
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHH
Confidence            46799999999999999999985

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.55  E-value=0.064  Score=51.75  Aligned_cols=46  Identities=26%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++.|.++.++.|.+.+.-             ...+-|-++||+|+|||+||+.|.++.
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~  535 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC  535 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence            3556788877777665431             123457899999999999999999865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=92.50  E-value=0.081  Score=41.56  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.2

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      -|.|.|+.|+||||||-.+..
T Consensus        18 gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            688999999999999998876

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.48  E-value=0.14  Score=47.73  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+.|.|++|+||||++..+....
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHH
Confidence            489999999999999998876654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.38  E-value=0.097  Score=46.95  Aligned_cols=47  Identities=13%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      ++.++.-+..++  .+-|.|.+|+|||||+-.+.... ...+  ..++|++.
T Consensus       187 LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~-a~~g--~~vl~fSl  233 (444)
T 3bgw_A          187 LDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSL  233 (444)
T ss_dssp             HHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHH-HHTT--CEEEEECS
T ss_pred             HHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHH-HHcC--CEEEEEEC
Confidence            444443344455  89999999999999999887765 2222  24666643

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=92.37  E-value=0.084  Score=45.85  Aligned_cols=28  Identities=32%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+++.+.|.||+||||++-.+.-..
T Consensus        15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~l   42 (348)
T 3io3_A           15 HDSLKWIFVGGKGGVGKTTTSSSVAVQL   42 (348)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence            4455688888999999999999887655

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=92.30  E-value=0.13  Score=44.55  Aligned_cols=36  Identities=28%  Similarity=0.291  Sum_probs=24.1

Q ss_pred             HHHHHHhcCCcceEEEEE-ecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEGESVGIVGLY-GMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~~~~~vI~Iv-G~gGvGKTTLak~i~~~~  208 (238)
                      ..+...+.+...++|.|+ |.||+||||++-.+.-..
T Consensus        14 t~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~l   50 (349)
T 3ug7_A           14 GITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYL   50 (349)
T ss_dssp             HHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred             hhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence            334444444444566655 789999999998886654

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.23  E-value=0.17  Score=47.37  Aligned_cols=61  Identities=21%  Similarity=0.272  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhcCCcceEEEEEecCCCchhH-HHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTT-LLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTT-Lak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      +...+.+...|...+  +.-|.||+|+|||| ++..|+.-. ..    ...+.|+..-+..+.++...+
T Consensus       192 ~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~-~~----~~~ILv~a~TN~AvD~i~erL  253 (646)
T 4b3f_X          192 TSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV-KQ----GLKVLCCAPSNIAVDNLVERL  253 (646)
T ss_dssp             HHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH-HT----TCCEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH-hC----CCeEEEEcCchHHHHHHHHHH
Confidence            344555555565555  66789999999996 455555443 21    236778777766677766654

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=92.15  E-value=0.18  Score=42.61  Aligned_cols=28  Identities=18%  Similarity=0.200  Sum_probs=23.3

Q ss_pred             CCcceEEEEEec-CCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGM-GGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~-gGvGKTTLak~i~~~~  208 (238)
                      +...++|+|.|. +|+||||++-.+....
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~l  129 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVI  129 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence            456679999996 8999999999887665

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=92.12  E-value=0.17  Score=46.67  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      +++.|.. ..-.+++|.|..|+|||+|+..|.+..     +-+.++++-+.+..
T Consensus       211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~  259 (578)
T 3gqb_A          211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERG  259 (578)
T ss_dssp             HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECH
T ss_pred             hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccH
Confidence            3455543 222399999999999999999998754     23567777777663

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=92.11  E-value=0.061  Score=52.61  Aligned_cols=17  Identities=35%  Similarity=0.624  Sum_probs=15.9

Q ss_pred             eEEEEEecCCCchhHHH
Q 046124          185 GIVGLYGMGGVGKTTLL  201 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLa  201 (238)
                      .+++|+|++|+|||||+
T Consensus       611 eiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          611 VFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             cEEEEEccCCCChhhhH
Confidence            38999999999999997

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=92.06  E-value=0.081  Score=46.66  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ....|+++|..|+|||||++.+.+.
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc
Confidence            3458999999999999999999873

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=92.06  E-value=0.076  Score=44.42  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             ceEEEEEe---cCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYG---MGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG---~gGvGKTTLak~i~~~~  208 (238)
                      .++|+|++   .||+||||++-.+....
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l   61 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLT   61 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence            45888887   89999999999887655

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=91.92  E-value=0.14  Score=45.88  Aligned_cols=42  Identities=29%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             eecHHHHHHHHHHhcC-------CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          166 VGLQLQLEHVWRCLEG-------ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~-------~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|.++.++.+...+..       +....|+++|.+|+|||||++.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            4666777777666531       24578999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-10

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 160 PIEPTVVGLQLQLEHVWRCL---EGESVGIVGLYGMGGVGKTTLLTHI-NNKFLESPTNF 215
           P + T    +  ++ V + L          + L+G  G GK+ + +   +        N+
Sbjct: 17  PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY 76

Query: 216 NYVIWVVMSKDSRLENIQETIGE 238
           + ++W+  S  +           
Sbjct: 77  DSIVWLKDSGTAPKSTFDLFTDI 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.6
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.18
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.97
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.97
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.93
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.86
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.84
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.79
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.65
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.63
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.62
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.61
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.6
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.59
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.59
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.56
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.56
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.56
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.55
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.54
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.53
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.52
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.52
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.51
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.51
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.5
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.49
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.49
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.49
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.48
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.47
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.41
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.41
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.37
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.37
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.37
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.36
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.34
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.31
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.18
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.17
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.16
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.09
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.08
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.94
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.9
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.86
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.76
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.75
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.72
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.71
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.59
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.5
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.48
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.47
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.47
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.4
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.37
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.35
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.33
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.32
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.29
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1okkd2	207	GTPase domain of the signal recognition particle r	96.25
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.24
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.2
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.18
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.17
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.16
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.16
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.15
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.13
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.11
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.1
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.07
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.03
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.01
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.87
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.86
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.79
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.76
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.74
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.73
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.72
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.72
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.64
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.51
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.39
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.37
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.37
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.34
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.28
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.27
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.14
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.1
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.02
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.81
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.62
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.48
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.44
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.43
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.38
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.89
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.74
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.57
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.49
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.41
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.41
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.37
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.0
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.21
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.02
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.95
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.9
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.79
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.16
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.15
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.75
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.46
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.89
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.23
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.17
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.13
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.92
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.74
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.67
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.59
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.14
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.75
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.74

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=1.3e-15  Score=128.07  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             CCcceecHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhhc-cCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124          162 EPTVVGLQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKFL-ESPTNFNYVIWVVMSKDSRLENIQETI  236 (238)
Q Consensus       162 ~~~~vG~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~~-~v~~~Fd~~~wV~vs~~~~~~~i~~~I  236 (238)
                      .+.+|||+.+++.|+++|.+   .+..+|+|+||||+||||||+.+|++.. ....+|++++||++++.++...+...+
T Consensus        19 ~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          19 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred             CCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHH
Confidence            45679999999999999853   4678999999999999999999998752 256789999999999999988776654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.18  E-value=4e-06  Score=67.28  Aligned_cols=69  Identities=17%  Similarity=0.151  Sum_probs=49.5

Q ss_pred             cceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124          164 TVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE  234 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~  234 (238)
                      .++|++..++.+..+|..      .....+-|+|+.|+||||+++.+.+.. .....|. .+|+..........+..
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l-~~~~~~~-~~~~~~~~~~~~~~~~~   91 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTAR-FVYINGFIYRNFTAIIG   91 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCE-EEEEETTTCCSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHH-hcccCCc-EEEecchhhhhhhhhhh
Confidence            468999999999888853      345689999999999999999999987 3333333 35555555444444443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.99  E-value=2.6e-06  Score=67.77  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=41.2

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+...-+-++|+.|+||||||+.+.+..
T Consensus        24 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            5779999999999999998877778899999999999999998765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=2.9e-06  Score=67.18  Aligned_cols=46  Identities=20%  Similarity=0.334  Sum_probs=40.9

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|..++..+....+-++||.|+||||||+.+.++.
T Consensus        14 ~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence            4679999999999999988876667799999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.6e-06  Score=67.47  Aligned_cols=46  Identities=20%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|..++.++...-+-++||.|+||||+|+.+.+..
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence            4679999999999999998876667899999999999999988765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=1.5e-06  Score=69.07  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+....+-++||.|+|||||++.++++.
T Consensus        12 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          12 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            4678999999999999988776668899999999999999998864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=3.7e-06  Score=67.16  Aligned_cols=46  Identities=28%  Similarity=0.391  Sum_probs=37.7

Q ss_pred             CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++||.++.++.+..++..     ....-+-++||+|+||||||+.++++.
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999888877742     234567799999999999999999976

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=5e-06  Score=66.26  Aligned_cols=46  Identities=30%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|..++..     ....-+-++||+|+||||||+.+.++.
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            4679999999998888752     233457799999999999999999877

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.86  E-value=2.7e-06  Score=68.36  Aligned_cols=42  Identities=14%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|||+.+++.+...    ..+.|.|+|++|+|||||++.+..+.
T Consensus        12 ~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            5789999999988764    33589999999999999999998866

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.84  E-value=2.1e-06  Score=67.52  Aligned_cols=27  Identities=41%  Similarity=0.636  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.|++-.
T Consensus        25 ~~Ge--i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGN--VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTC--CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCChHHHHHHHHhccc
Confidence            3455  99999999999999999999866

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=4.6e-06  Score=62.86  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.|.|.|+.|+||||||+.|....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997664

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=9.7e-06  Score=64.89  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             CcceecHHHHHHHHHHhcC-----------------CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          163 PTVVGLQLQLEHVWRCLEG-----------------ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      .+++|.+..++.|..+|..                 ...+.+-++||+|+||||+|+.++++.     .+ ...++..+.
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~-----~~-~~~~~~~~~   87 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD   87 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH-----Hh-hhhcccccc
Confidence            4678999999999888753                 234578999999999999999999976     12 244555554


Q ss_pred             CCCH
Q 046124          226 DSRL  229 (238)
Q Consensus       226 ~~~~  229 (238)
                      ..+.
T Consensus        88 ~~~~   91 (253)
T d1sxja2          88 VRSK   91 (253)
T ss_dssp             CCCH
T ss_pred             chhh
Confidence            4443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.1e-05  Score=64.71  Aligned_cols=27  Identities=33%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++  +++|+|++|+|||||++.+++-.
T Consensus        24 ~~Ge--i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGE--FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCC--EEEEECCCCChHHHHHHHHhcCC
Confidence            3456  99999999999999999998865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=3.2e-05  Score=60.20  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=38.2

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|++++++++...|....-.-+-+||++|+|||+|+..+....
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            458999999999999987655568899999999999998777643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.63  E-value=1.3e-05  Score=64.69  Aligned_cols=28  Identities=32%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++.|++-.
T Consensus        26 i~~Ge--~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          26 VKDGE--FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EETTC--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EcCCC--EEEEECCCCChHHHHHHHHhcCC
Confidence            34456  99999999999999999999865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=2.6e-05  Score=59.45  Aligned_cols=29  Identities=24%  Similarity=0.452  Sum_probs=25.2

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++-+|||.|+.|+||||||+.+....
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567799999999999999999998766

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.61  E-value=1.4e-05  Score=64.41  Aligned_cols=27  Identities=33%  Similarity=0.365  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+-.
T Consensus        30 ~~Ge--~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGE--FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCC--EEEEECCCCChHHHHHHHHHcCC
Confidence            3456  99999999999999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=1.3e-05  Score=64.64  Aligned_cols=28  Identities=43%  Similarity=0.592  Sum_probs=24.6

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+++  ++||+|+||+|||||++.|.+-.
T Consensus        25 v~~Ge--i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          25 IEEGE--IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             ECTTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            44556  99999999999999999999876

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.60  E-value=1.8e-05  Score=63.62  Aligned_cols=46  Identities=26%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             CcceecHHHHHHHHHHhc----CC----c-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE----GE----S-VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~----~~----~-~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|++..++.|...+.    ++    + ..++-|+|+.|+||||+++.+.+..
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence            456899988888877663    22    1 2245667999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=1.6e-05  Score=63.48  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=37.4

Q ss_pred             CcceecHHHHHHHHHHhcCC-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGE-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.++..+.|..++... ...-+-|+||+|+||||+|+.+.++.
T Consensus        11 ~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            46789988888888887654 34456799999999999999998864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.59  E-value=1.4e-05  Score=64.03  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.+.+-.
T Consensus        29 ~~Ge--~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGE--FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCCcchhhHhccCCC
Confidence            3456  99999999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.57  E-value=1.5e-05  Score=64.20  Aligned_cols=32  Identities=34%  Similarity=0.371  Sum_probs=26.3

Q ss_pred             HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...+..++  +++|+|+||+|||||++.|.+-.
T Consensus        25 vs~~i~~Ge--i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          25 IDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEECCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            333344566  99999999999999999999866

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=1.7e-05  Score=65.36  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|++..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            99999999999999999999876

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=1.7e-05  Score=63.91  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|++-.
T Consensus        29 ~~Ge--~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQ--IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSC--EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHcCCc
Confidence            3455  99999999999999999999866

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=3.9e-05  Score=62.74  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|++.+++++...|....-.-+-+||++|+|||+|+..+....
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            458999999999999987654567799999999999998877653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.55  E-value=2.1e-05  Score=57.71  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+|.|.|++|+||||||+.+..+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            478899999999999999887644

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.54  E-value=1.9e-05  Score=63.60  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|+|++|+|||||++.|++-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            88999999999999999999866

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.53  E-value=1.8e-05  Score=59.06  Aligned_cols=23  Identities=43%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..|.|.|++|+||||+|+.+...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.52  E-value=1.9e-05  Score=64.16  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+..++  +++|+|+||+|||||++.|.+-.
T Consensus        25 ~~v~~Ge--i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          25 ISVNKGD--VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCC--EEEEECCCCCcHHHHHHHHHCCC
Confidence            3344566  99999999999999999999876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.52  E-value=1.6e-05  Score=63.59  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.+.+-.
T Consensus        24 ~~Ge--~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGE--YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTC--EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCC--EEEEECCCCCcHHHHHHHHhcCc
Confidence            3456  99999999999999999999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.51  E-value=2.1e-05  Score=63.45  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=23.2

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++  +++|+|++|+|||||++++.+-.
T Consensus        27 ~Ge--~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNS--IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTE--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHHHhh
Confidence            345  99999999999999999998865

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.1e-05  Score=63.79  Aligned_cols=27  Identities=26%  Similarity=0.474  Sum_probs=23.8

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||+++|.+-.
T Consensus        38 ~~Ge--~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGE--VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCcHHHHHHHHhccc
Confidence            3456  99999999999999999999865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.50  E-value=2.1e-05  Score=64.02  Aligned_cols=29  Identities=28%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++  +++|+|++|+|||||++.|.+-.
T Consensus        24 ~i~~GE--i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          24 QARAGD--VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EECTTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCC--EEEEECCCCCcHHHHHHHHHcCc
Confidence            344566  99999999999999999999855

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.49  E-value=4.1e-05  Score=61.38  Aligned_cols=42  Identities=29%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             ecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          167 GLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       167 G~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++.+.+.+..+..     +.+..|-++||+|+||||||+.|++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            344555555555543     255678899999999999999999976

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.6e-05  Score=58.56  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++|+|+|..|+|||||+..+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            58999999999999999988654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.49  E-value=3.1e-05  Score=59.48  Aligned_cols=26  Identities=27%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..+.+|.|+|++|+||||+|+.|..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=1.8e-05  Score=63.47  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=23.6

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|+||+|||||++.+.+-.
T Consensus        23 ~~Ge--i~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          23 RAGE--ILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             ETTC--EEECBCCTTSSHHHHHHHHHTSC
T ss_pred             cCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence            3456  99999999999999999999844

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=2.5e-05  Score=63.44  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=23.6

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++++.+-.
T Consensus        39 ~~Ge--~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGK--TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTC--EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCC--EEEEECCCCChHHHHHHHHhccc
Confidence            3455  99999999999999999998865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.47  E-value=2.9e-05  Score=58.05  Aligned_cols=25  Identities=16%  Similarity=0.103  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|-|+|+.|+||||+|+.+....
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999988553

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.3e-05  Score=62.24  Aligned_cols=27  Identities=30%  Similarity=0.575  Sum_probs=23.9

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +|+|+|++|+|||||++++.+-.
T Consensus        27 ~~Ge--~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGE--VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence            3456  99999999999999999999865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.7e-05  Score=56.76  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.++|.|+|+.|+||||+|+.+....
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.37  E-value=4.3e-05  Score=57.04  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...|.|.|++|+||||+++.+....
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999997754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=5.3e-05  Score=58.30  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.2

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++..+|.|+|++|+||||+|+.|..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            457799999999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.37  E-value=2.5e-05  Score=62.89  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=23.7

Q ss_pred             cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          180 EGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++  +++|+|++|+|||||++.|.+-.
T Consensus        29 ~~Ge--~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGE--RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTC--EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCC--EEEEECCCCCcHHHHHHHHHcCc
Confidence            3455  99999999999999999999865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=6.6e-05  Score=62.43  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=35.9

Q ss_pred             CcceecHHHHHHHHHHhcC--------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG--------------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.++.++.+...+.+              ...+-|-++||.|+|||+|||.+.+..
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcc
Confidence            3578999888888665521              134568899999999999999999876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=4.1e-05  Score=57.48  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|.++||.|+||||+++.+...
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4667799999999999999765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.33  E-value=4.9e-05  Score=56.98  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEecCCCchhHHHHHHHhh
Q 046124          187 VGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       187 I~IvG~gGvGKTTLak~i~~~  207 (238)
                      |.|+||+|+||||+++.+...
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=9.3e-05  Score=58.98  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+...+.+..++..+.. ..+-|+|+.|+||||+|+.+.+..
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            4679999999999999987653 457899999999999999987654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=0.00018  Score=61.65  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=40.5

Q ss_pred             cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhc--cC-CCCCCEEEEE
Q 046124          164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFL--ES-PTNFNYVIWV  221 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~--~v-~~~Fd~~~wV  221 (238)
                      .++|++..++.++..|....-.-+-+||++|+|||+|+.-+.....  .+ ..-.+.++|.
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~   83 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS   83 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             CCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            3589999999999999865444578899999999998764443210  12 2234556665

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=5.7e-05  Score=57.46  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|-++|+.|+||||+|+.+....
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4588899999999999999998765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00015  Score=58.68  Aligned_cols=46  Identities=28%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             CcceecHHHHHHHHHH---hcC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRC---LEG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~---L~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.++.++.|.+.   +..         ...+-|-++||+|+|||+||+.|.+..
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            4678988877777543   321         124568899999999999999999876

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.16  E-value=5.1e-05  Score=61.58  Aligned_cols=28  Identities=36%  Similarity=0.571  Sum_probs=24.0

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..++  +++|+|++|+|||||++++.+-.
T Consensus        41 i~~Ge--~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGE--TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTC--EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHHhcC
Confidence            33456  99999999999999999998765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00015  Score=55.07  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.+|-++|++|+||||+|+.+....
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            45699999999999999999987644

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00034  Score=56.17  Aligned_cols=46  Identities=28%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             CcceecHHHHHHHHH---HhcC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWR---CLEG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~---~L~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++|.+..++.|.+   .+..         ...+-|-++|+.|+|||+||+.|.+..
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHc
Confidence            367888877666544   3322         123468899999999999999999866

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.94  E-value=0.00021  Score=54.84  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-+|.|+||+|+||||+++.|...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            447889999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.91  E-value=0.00053  Score=54.92  Aligned_cols=26  Identities=31%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++-|-++||.|+|||+||+.|++..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcc
Confidence            34568899999999999999999976

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00062  Score=56.90  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=29.1

Q ss_pred             HHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+++..+..  ++..+|||.|++|+|||||...+....
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4455555543  568899999999999999999987665

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00048  Score=55.51  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             cceecHHHHHHHHHHh----cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCL----EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +++|.+..++.|.+.+    ..         ..++-|-++||.|+|||+|++.+.+..
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHh
Confidence            5678888877776653    32         134568899999999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.85  E-value=0.0003  Score=53.82  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+|-|.|++|+||||+|+.|....
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.78  E-value=0.00036  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +|.|+|+.|+|||||++.+.++.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00039  Score=53.06  Aligned_cols=26  Identities=23%  Similarity=0.463  Sum_probs=22.8

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +...+|+|+|..|+|||||.+.+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            34568999999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.77  E-value=0.00036  Score=51.17  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|+|+|..|+|||||++.+.+..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999987764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00032  Score=53.55  Aligned_cols=26  Identities=35%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+.+|+|-|.-|+|||||++.|....
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            55689999999999999999998776

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.75  E-value=0.00094  Score=55.68  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             HHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          171 QLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       171 ~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...+++..+.  .++..+|||.|++|+|||||...+....
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3455555553  3577899999999999999999988754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.72  E-value=0.00079  Score=50.05  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=26.7

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..++.++. ....+|.|+|.+|+|||||+..+.+.
T Consensus         4 ~~~~~~~~~-~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           4 FTRIWRLFN-HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHT-TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHhC-CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            455664444 44467889999999999999998765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00096  Score=55.33  Aligned_cols=46  Identities=24%  Similarity=0.352  Sum_probs=36.8

Q ss_pred             CcceecHHHHHHHHHHhc-------C-C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE-------G-E-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~-------~-~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.+..++.+...+.       + + ...++.++||.|+|||.||+.|..-.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            467999999998877663       1 1 34578899999999999999998765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.69  E-value=0.00045  Score=57.49  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=32.6

Q ss_pred             CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124          163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +.++|.+..+..+.-.+......-|-++|+.|+||||||+.+..
T Consensus         7 ~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHH
Confidence            36799998887665444322223589999999999999998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.65  E-value=0.0009  Score=52.35  Aligned_cols=58  Identities=31%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             Ccceec--HHHHHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124          163 PTVVGL--QLQLEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM  223 (238)
Q Consensus       163 ~~~vG~--~~~~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v  223 (238)
                      ..++|.  +....-+..++...  ...-+-|+|+.|+|||.|++.++++.. .  ....+++++.
T Consensus        11 nF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~-~--~~~~~~~~~~   72 (213)
T d1l8qa2          11 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK-K--RGYRVIYSSA   72 (213)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH-H--TTCCEEEEEH
T ss_pred             hccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhc-c--CccceEEech
Confidence            445663  33344444444432  223478999999999999999999872 2  2234555543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.50  E-value=0.00062  Score=50.29  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68899999999999999998754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.48  E-value=0.0009  Score=49.71  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..+|.++|.+|+|||||+..+.+..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999997653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0014  Score=54.30  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=23.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-+|||.|..|+||||+|+.|....
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            46799999999999999999998766

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00098  Score=52.19  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=22.7

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.||.++|++|+||||.+-.+....
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999877777665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.001  Score=52.15  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.||.++|++|+||||.+-.+....
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467799999999999999877776665

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.37  E-value=0.0013  Score=51.23  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....+..+|-+.|++|+||||||+.+....
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344566799999999999999999997644

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00063  Score=55.02  Aligned_cols=25  Identities=40%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-|-++|+.|+|||+||+.+++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3467799999999999999999976

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0017  Score=50.26  Aligned_cols=41  Identities=12%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             cHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124          168 LQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       168 ~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+..++.+...+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus         7 ~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2           7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            45678888888887753 459999999999999999887643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0051  Score=47.50  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      .-+++-|.|++|+|||||+-.+......   ....-...+|++....++...+
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   85 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL   85 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHH
Confidence            3359999999999999999877543311   1112346788887776654433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.30  E-value=0.0013  Score=51.37  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.+||.++|++|+||||.+-.+....
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45699999999999998877776655

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0018  Score=51.93  Aligned_cols=37  Identities=32%  Similarity=0.514  Sum_probs=29.8

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +..+.+.+.+...++|.+.|-||+||||++-.+....
T Consensus         8 ~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2           8 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5566777777888899999999999999877765544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0012  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +|.++|..|+|||||++.+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999877653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.25  E-value=0.0013  Score=51.22  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++.++|.++|+.|+||||.+-.+...
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34579999999999999976665543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0012  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.++|..|+|||||++.+.+.
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            46999999999999999987654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.21  E-value=0.001  Score=49.51  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ..-.|.++|++|+|||||++.+.+.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0014  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.++|..|+|||||++.+.+.
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0013  Score=48.42  Aligned_cols=23  Identities=26%  Similarity=0.164  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.++|..|+|||||++.+.+.
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.18  E-value=0.0013  Score=51.37  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.||.++|+.|+||||.+-.+....
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999998777666655

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.00058  Score=51.00  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             CcceEEEEEecCCCchhHHHHHHHhh
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ++...|+|+|..++|||||++.+.+.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      ...|.|+|..|+|||||++.+.+.
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            458999999999999999997654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.++|..|+|||||++.+.+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            69999999999999999887653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.16  E-value=0.0039  Score=48.59  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      .-.++-|+|++|+|||||+..+....   ..+...++|++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~---~~~~~~~~~is~e~   64 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA---CANKERAILFAYEE   64 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH---HTTTCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH---HHhccccceeeccC
Confidence            44599999999999999999988765   24455677877543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0015  Score=48.62  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -+|.|+|..|+|||||++.+.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=48.44  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -+|.|+|.+|+|||||++.+.+.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0014  Score=48.49  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.|+|..|+|||||++.+.++.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68899999999999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0015  Score=47.76  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|+|+|..|+|||||++.+.+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999997553

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.11  E-value=0.015  Score=45.13  Aligned_cols=51  Identities=25%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      .-+++-|.|++|+|||||+-.+......   ..+.....+|+......+...+.
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR   88 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHH
Confidence            3459999999999999999987654310   11234568888887777765443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0016  Score=48.21  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|.++|..|+|||||++.+.+..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            369999999999999999887653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0015  Score=49.02  Aligned_cols=23  Identities=43%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|+|+|..|+|||||++.+.+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0017  Score=48.30  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.|+|..|+|||||++.+.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999987654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0016  Score=48.15  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +|.|+|..|+|||||++.+.+.
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999987653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.07  E-value=0.0019  Score=48.09  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=24.2

Q ss_pred             HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.+..--.|.++|.+|+|||||++.+.+..
T Consensus         5 ~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_           5 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             HHHHTTCCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             hhhhCCCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            33444444568899999999999999997543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.00044  Score=51.92  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .+..|+|+||+||||++..|+-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3677899999999999999863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0032  Score=52.06  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             cceecHHHHHHHHHHhcC--------C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          164 TVVGLQLQLEHVWRCLEG--------E-SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       164 ~~vG~~~~~~~l~~~L~~--------~-~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++|.+...+.+...+..        + ...++.++|+.|+|||.||+.+....
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            568988888887665531        1 23478899999999999999987754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.01  E-value=0.0018  Score=47.70  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..|.++|..|+|||||++.+.+..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            368899999999999999876554

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=48.05  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -+|.++|..|+|||||++.+.+.
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999987643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.002  Score=48.11  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhC
Confidence            347999999999999999987764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0019  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=19.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|.++|..|+|||||++.+.+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.003  Score=49.79  Aligned_cols=34  Identities=35%  Similarity=0.590  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.|..+|. +.  ...++|..|+|||||.+.+.++.
T Consensus        86 ~~~L~~~l~-~k--t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          86 IEELKEYLK-GK--ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             HHHHHHHHS-SS--EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HhhHHHHhc-CC--eEEEECCCCCCHHHHHHhhcchh
Confidence            455666553 44  78899999999999999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.002  Score=49.07  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.|+|..|+|||||++.+.+.
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            36899999999999999987754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0022  Score=47.59  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|.++|..|+|||||++.+.+..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368999999999999999887543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.87  E-value=0.0027  Score=47.56  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=26.1

Q ss_pred             HHHHHHHh-cCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          172 LEHVWRCL-EGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       172 ~~~l~~~L-~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..+.+.| .....-.|.++|..|+|||||++.+.+.
T Consensus         4 ~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           4 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34444434 3345567889999999999999998654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.015  Score=44.94  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=35.8

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLEN  231 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~  231 (238)
                      .-+++-|+|++|+|||||+..+......   ....+..+.|+.....++...
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            3459999999999999999988654311   223567788888877776543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.0059  Score=45.35  Aligned_cols=28  Identities=32%  Similarity=0.249  Sum_probs=24.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCC
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESP  212 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~  212 (238)
                      ..+|.+.|.=|+|||||+|.+.... .+.
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l-g~~   60 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQ   60 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc-ccc
Confidence            3499999999999999999999877 443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0026  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -+|.|+|..|+|||||++.+.+.
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999986653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0026  Score=47.52  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +|.++|..|+|||||++.+.+.
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999987654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.76  E-value=0.0048  Score=52.07  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             CcceecHHHHHHHHHHhc------------------------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLE------------------------------GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~------------------------------~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..++|.++.++.+...+.                              +-...-+-.+||.|||||-|||.+....
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhc
Confidence            567999988877765442                              1134458899999999999999987643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0033  Score=51.35  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+-+|||-|+.|+|||||+..|....
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999886654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0028  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|.++|..|+|||+|++.+.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999876543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.0011  Score=48.55  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|+++|..|+|||||++.+.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.025  Score=42.09  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      .++-|.|++|+|||||+-.+......   ....+....++..........+
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL   74 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHH
Confidence            49999999999999999988765411   1123445566666655554443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.72  E-value=0.0039  Score=52.56  Aligned_cols=26  Identities=23%  Similarity=0.048  Sum_probs=23.5

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.+-++||+|+||||+|+.+.+..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            44689999999999999999999977

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.003  Score=47.62  Aligned_cols=24  Identities=38%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|.|+|..|+|||||++.+.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhCC
Confidence            479999999999999999876643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.003  Score=46.76  Aligned_cols=24  Identities=42%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            347999999999999999987553

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.69  E-value=0.0032  Score=46.65  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +.+|.|+|..|+|||||++.+.+.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            357999999999999999987653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.64  E-value=0.0054  Score=48.99  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+.++...+...  +.-.|.|+|..|+|||||.+.|+++.
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444555555432  45679999999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0032  Score=46.81  Aligned_cols=24  Identities=38%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .-.|.++|..|+|||||++.+.+.
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0038  Score=46.28  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|.++|..|+|||||++.+.++.
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368899999999999999887643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0022  Score=47.73  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             EEEEEecCCCchhHHHHHHHhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      .|.++|..|+|||||++.+.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999987543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.39  E-value=0.0032  Score=50.98  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=18.6

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ++-.|+|+||+||||++.+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            377899999999999999884

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.37  E-value=0.025  Score=46.61  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=33.8

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCC------C----CCC---EEEEEEeCCCCCHHHHHHHHhC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESP------T----NFN---YVIWVVMSKDSRLENIQETIGE  238 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~------~----~Fd---~~~wV~vs~~~~~~~i~~~Il~  238 (238)
                      -|-|.|+.|+|||||++.+.+...+..      .    ++.   ..+-+......+..++++..++
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR  233 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR  233 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhc
Confidence            489999999999999999998662210      0    111   1222234456677777776553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0044  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      -.|.++|..|+|||||++.+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999977653

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0048  Score=49.47  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=21.3

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.-+++|-+.|-||+||||++-.+....
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            3446788899999999999777665443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.28  E-value=0.0057  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++-++|++|+|||.||+.+.+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            55668999999999999999876

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.27  E-value=0.0072  Score=48.03  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             ceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          165 VVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       165 ~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +||....+..+...+..  ....-|-|.|..|+|||++|+.|+...
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            46666666666665543  111257899999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.14  E-value=0.0032  Score=46.79  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=10.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .-.|.|+|..|+|||||+..+.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            34689999999999999986654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.10  E-value=0.028  Score=42.94  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .++-|.|++|+|||||+..+.-..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            499999999999999999987543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.02  E-value=0.008  Score=51.98  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=35.1

Q ss_pred             CcceecHHHHHHHHHHhcC--------C------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          163 PTVVGLQLQLEHVWRCLEG--------E------SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       163 ~~~vG~~~~~~~l~~~L~~--------~------~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ..+||.+..++.+--.+.+        +      ..+=|-++||.|+|||.||+.|....
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHh
Confidence            4678998888877655531        1      23459999999999999999998855

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.042  Score=41.85  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=40.0

Q ss_pred             HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc-CCCCCCEEEEEEe-CCCCCHHHHH
Q 046124          172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE-SPTNFNYVIWVVM-SKDSRLENIQ  233 (238)
Q Consensus       172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~-v~~~Fd~~~wV~v-s~~~~~~~i~  233 (238)
                      ++-+..++..+...-+-++|++|+||||+|+.+.+.... ...|-|. .++.- +....+..+.
T Consensus         3 ~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~-~~i~~~~~~I~Id~IR   65 (198)
T d2gnoa2           3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDIR   65 (198)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCE-EEEeCCcCCCCHHHHH
Confidence            455666677778889999999999999999998875511 2234443 44432 2334555543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.81  E-value=0.0081  Score=46.63  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ...|.++|.+|+|||||++.+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            3579999999999999999875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.0084  Score=50.22  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ++-.|+|+||+||||++..|+
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            377899999999999999984

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.015  Score=46.94  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          181 GESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++.+.||+|+|+-+.|||||++.+++..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4578899999999999999999999754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.047  Score=44.24  Aligned_cols=35  Identities=20%  Similarity=0.070  Sum_probs=27.9

Q ss_pred             HHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          174 HVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       174 ~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .+++.+.. +.-.+++|+|..|+|||||+..+.+..
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            56777764 233399999999999999999988754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.43  E-value=0.012  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             cceEEEEEecCCCchhHHHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      +.+-|+|+|..|.|||||+..+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHH
Confidence            45679999999999999999874

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.38  E-value=0.054  Score=43.58  Aligned_cols=60  Identities=25%  Similarity=0.435  Sum_probs=40.3

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR-LENIQETI  236 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~-~~~i~~~I  236 (238)
                      +++.+.. +.-.+++|+|..|+|||||+..+.+..  .+.+=++++++-+.+... +.++.+++
T Consensus        58 aID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~--~~~~~~v~V~~~iGer~~ev~~~~~~~  119 (276)
T d2jdid3          58 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEM  119 (276)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH--TTTCSSEEEEEEESCCHHHHHHHHHHH
T ss_pred             eeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH--HhhCCCeEEEEEeccChHHHHHHHHHH
Confidence            4555543 222389999999999999999887764  123345778888887754 34555443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.018  Score=48.20  Aligned_cols=49  Identities=16%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQ  233 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~  233 (238)
                      ++..|.|++|+||||++..+..........=..+++++.+-.-....+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~  212 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT  212 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHH
Confidence            4888999999999998865543321111222345666655444444443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.89  E-value=0.0061  Score=48.12  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=19.2

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ...++|+.|+|||||.+.+..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            56799999999999999998764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.84  E-value=0.018  Score=47.84  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +-+|.|=|+=|+||||+++.+.+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHh
Confidence            4589999999999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.74  E-value=0.027  Score=42.86  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=18.1

Q ss_pred             ceEEEEEecCCCchhHHHHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHI  204 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i  204 (238)
                      -.++-|.|++|+|||||+-.+
T Consensus        26 G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHH
Confidence            349999999999999999654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.047  Score=42.95  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=19.7

Q ss_pred             EEEEEecCCCchhHHHHHHHhhh
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +.-|+|++|+|||||+-.+.-..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78899999999999998876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.49  E-value=0.055  Score=42.72  Aligned_cols=27  Identities=19%  Similarity=0.350  Sum_probs=21.8

Q ss_pred             hcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124          179 LEGESVGIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +..++  ++.|.|.+|+|||||+-.+.-.
T Consensus        32 ~~~G~--l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          32 ARGGE--VIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             BCTTC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCe--EEEEEeCCCCCHHHHHHHHHHh
Confidence            44556  8889999999999999887644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.41  E-value=0.028  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCchhHHHHHHHh
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +-.|+|+|..|+|||||.+.+.+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999986

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.41  E-value=0.068  Score=42.77  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENI  232 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i  232 (238)
                      .-+++-|+|+.|+|||||+-.++...++ .+  ..++||..-..++...+
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g--~~~vyIDtE~~~~~e~a  105 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQA-AG--GVAAFIDAEHALDPDYA  105 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHH-TT--CEEEEEESSCCCCHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhc-CC--CEEEEEECCccCCHHHH
Confidence            3459999999999999998777765522 22  36899988888877654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.37  E-value=0.023  Score=46.05  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCchhHHHHHHHhhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      -.|||+|.+.+|||||.+.+.+..
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            469999999999999999999753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.077  Score=42.28  Aligned_cols=45  Identities=20%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHH
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLEN  231 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~  231 (238)
                      -+++-|+|+.|+|||||+-.++...++. +  ..++|+..-..++...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~-g--~~~vyidtE~~~~~~~   98 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQRE-G--KTCAFIDAEHALDPIY   98 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcC-C--CEEEEEccccccCHHH
Confidence            3599999999999999999888766322 2  2478888777777654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.00  E-value=0.064  Score=42.91  Aligned_cols=45  Identities=20%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLE  230 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~  230 (238)
                      .-+++-|+|+.|+|||||+-.++...++. +  ..++|+..-..++..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~-g--~~v~yiDtE~~~~~~  100 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKA-G--GTCAFIDAEHALDPV  100 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhC-C--CEEEEEECCccCCHH
Confidence            34599999999999999999988776332 2  347899877777765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.21  E-value=0.04  Score=41.34  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=18.7

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      -|.|.|+.|+||||||-.+..
T Consensus        16 gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            588999999999999988765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.02  E-value=0.081  Score=44.68  Aligned_cols=43  Identities=26%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .|....--..+..+.....+.|-|.|+-|+||||.+..+.+..
T Consensus       140 LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            4554443344444555555799999999999999999988865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.048  Score=42.74  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=19.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHH
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      +.+++-|.|+|..||||++|.|.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHH
Confidence            34688999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.90  E-value=0.048  Score=40.96  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      -|-|.|+.|+||||||-.+..
T Consensus        17 gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999988764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.79  E-value=0.048  Score=43.54  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ....|+|+|++.+|||||++.+.+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            44679999999999999999999854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.16  E-value=0.065  Score=39.89  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.4

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      -|-|.|..|+||||||-.+..
T Consensus        17 gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            588999999999999977665

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.15  E-value=0.072  Score=44.12  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             CcceEEEEEecCCCchhHHHHHHH
Q 046124          182 ESVGIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       182 ~~~~vI~IvG~gGvGKTTLak~i~  205 (238)
                      ++.|=|+|+|..|.|||||+..+.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHH
Confidence            456679999999999999999885

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.75  E-value=0.11  Score=39.82  Aligned_cols=39  Identities=15%  Similarity=0.115  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          170 LQLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       170 ~~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-+..+..+|.. .+..-|.++||+++|||+++..|.+-.
T Consensus        38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            345555556644 245689999999999999999887654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.46  E-value=0.14  Score=41.03  Aligned_cols=39  Identities=15%  Similarity=0.116  Sum_probs=29.0

Q ss_pred             EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124          186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS  227 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~  227 (238)
                      +++|+|..|+|||+|+..+....   ..+-+.++++-+.+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~---~~~~~v~V~~~iGer~  107 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ---QGQNVICVYVAIGQKA  107 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC---CTTTCEEEEEEESCCH
T ss_pred             eEeeccCCCCChHHHHHHHHhhh---cccCceeeeeeecchh
Confidence            89999999999999998754422   2344577787776654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.89  E-value=0.087  Score=40.92  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEEEecCCCchhHHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~  205 (238)
                      ++-|.|||..||||++|.|.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            78899999999999999764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.81  E-value=0.21  Score=39.72  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             HHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124          173 EHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       173 ~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      .-+..+|..  ..-.-+-++|+|+.||||++..|..-.
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344445533  355689999999999999999987644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.23  E-value=0.065  Score=42.52  Aligned_cols=16  Identities=25%  Similarity=0.306  Sum_probs=13.2

Q ss_pred             EEEEEecCCCchhHHH
Q 046124          186 IVGLYGMGGVGKTTLL  201 (238)
Q Consensus       186 vI~IvG~gGvGKTTLa  201 (238)
                      -+-|.|++|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4678899999999753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.17  E-value=0.1  Score=39.51  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             EEEEEecCCCchhHHHHHHHh
Q 046124          186 IVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~~  206 (238)
                      .|+|+|....|||||+..+.+
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            599999999999999999975

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.13  E-value=0.08  Score=42.42  Aligned_cols=16  Identities=31%  Similarity=0.385  Sum_probs=13.2

Q ss_pred             EEEEEecCCCchhHHH
Q 046124          186 IVGLYGMGGVGKTTLL  201 (238)
Q Consensus       186 vI~IvG~gGvGKTTLa  201 (238)
                      .+-|.|++|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3668899999999754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.92  E-value=0.13  Score=39.71  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             cceEEEEEecCCCchhHHHHHHHh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +...|+|+|-...|||||+..+..
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            455689999999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.47  E-value=0.19  Score=42.02  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             eEEEEEecCCCchhHHHHHHHhh
Q 046124          185 GIVGLYGMGGVGKTTLLTHINNK  207 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~~~  207 (238)
                      +-+.|+|+.|+|||++++.+...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            45899999999999998765543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.74  E-value=0.37  Score=33.32  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=24.2

Q ss_pred             ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124          184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK  225 (238)
Q Consensus       184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~  225 (238)
                      .++.-|+++-|+|||+++-.++.+.       ..++.+.++.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~-------~~~vli~~P~   42 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQ-------GYKVLVLNPS   42 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTT-------TCCEEEEESC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHc-------CCcEEEEcCh
Confidence            4577789999999999987665432       2346665543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.67  E-value=0.25  Score=39.43  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      ++..|+|+|.-+.|||||++.+.+..
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999864

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.59  E-value=0.29  Score=39.26  Aligned_cols=32  Identities=16%  Similarity=-0.034  Sum_probs=22.5

Q ss_pred             HHHHhcC-CcceEEEEEecCCCchhHHHHHHHh
Q 046124          175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINN  206 (238)
Q Consensus       175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~  206 (238)
                      +++.|.. ..-.+++|+|..|+|||+|+..+..
T Consensus        58 aID~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          58 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             EEecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            3444443 2223899999999999999876653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.14  E-value=0.25  Score=38.51  Aligned_cols=21  Identities=29%  Similarity=0.178  Sum_probs=18.4

Q ss_pred             eEEEEEecCCCchhHHHHHHH
Q 046124          185 GIVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       185 ~vI~IvG~gGvGKTTLak~i~  205 (238)
                      --|+|+|..+.|||||+..+.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            368999999999999998773

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.75  E-value=0.2  Score=39.18  Aligned_cols=20  Identities=30%  Similarity=0.252  Sum_probs=18.1

Q ss_pred             EEEEEecCCCchhHHHHHHH
Q 046124          186 IVGLYGMGGVGKTTLLTHIN  205 (238)
Q Consensus       186 vI~IvG~gGvGKTTLak~i~  205 (238)
                      -|+|+|..+.|||||+..+.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHH
Confidence            39999999999999999883

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.74  E-value=0.4  Score=37.96  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             cceEEEEEecCCCchhHHHHHHHhhh
Q 046124          183 SVGIVGLYGMGGVGKTTLLTHINNKF  208 (238)
Q Consensus       183 ~~~vI~IvG~gGvGKTTLak~i~~~~  208 (238)
                      +...|+|+|.-.+|||||++.+.+..
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            45579999999999999999999864