Citrus Sinensis ID: 046158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFSTEQKEDTSRVVVKVEKEERENSPEGSRGRKNHQREDVDLDEERSNKQSALYTEESELSDMFDKVLLLHVDSNGKPTMCTKGQGEDSLLQKGQSNGSGEKSRSRKQGKRKDTVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPEL
ccccccccccccccHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccHHEEEccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEHHHcccccccccccccccHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEcccEEEEEEcccEEEEEEEccccccc
cccccHcccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccEEEcccccHHHHHHHEEcccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEccccEEEEcccccEEEEEEcccccccc
MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLesygfsteqkedtSRVVVKVEkeerenspegsrgrknhqredvdldeersnkqsalytEESELSDMFDKVLLLHVdsngkptmctkgqgedsllqkgqsngsgeksrsrkqgkrkdtVDLRTLLILCAQAVSSNDYRTANELLKQIRQhssltgdgsQRLAHWFANGLEarmagsgtgtksFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGirygfqwpmLIQFLsmrtggpprlritgielpqpgfrpaeRIEETGRRLLKYCQrfnvpfeynciasqnwetiqiedlkinpdevlaVNSLFRFknlldetvdvncprnSVLKLIRkikpdifvnsivngsynapffVTRFREAIFHFSslfdmfdttmpredperLMFEREVYGREAMNVIACeglerverpetyKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKdfvidqdnnwmlqgWKGRIVFAsscwvpapel
MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESygfsteqkedtsrvvvkvekeerenspegsrgrknhqredvdldeersnKQSALYTEESELSDMFDKVLLLHVDSNGKPTMCTKgqgedsllqkgqsngsgeksrsrkqgkrkdtvDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITgielpqpgfrpaERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFknlldetvdvncprnsVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIaceglerverpetYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPEL
MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFSTEQKEDTSrvvvkvekeereNSPEGSRGRKNHQREDVDLDEERSNKQSALYTEESELSDMFDKVLLLHVDSNGKPTMCTKGQGEDSLLQKGQSNGSGEKSRSRKQGKRKDTVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPEL
*******************************FLPTGNQLIIDLESYGF*************************************************************FDKVLLLHV******************************************VDLRTLLILCAQAVSSNDYRTANELLKQI***********QRLAHWFANGLEARMA*******SFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMP****ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWV*****
***********MLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESY************************************************************SDMFDKVLLLHVDS*******************************************RTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTK*********KSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPE*
MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFS*******************************************************ELSDMFDKVLLLHVDSNGKPTMCTKGQGEDS***********************DTVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPEL
******FLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFSTE***DTSRVVVKVEKE******************DVDLDEERSNKQSALYTEESELSDMFDKVLLLHVDS**************************************DTVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAP**
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MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFSTEQKEDTSRVVVKVEKEERENSPEGSRGRKNHQREDVDLDEERSNKQSALYTEESELSDMFDKVLLLHVDSNGKPTMCTKGQGEDSLLQKGQSNGSGEKSRSRKQGKRKDTVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPAPEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query542 2.2.26 [Sep-21-2011]
Q9XE58769 Scarecrow-like protein 14 yes no 0.979 0.690 0.598 0.0
P0C884630 Scarecrow-like protein 34 no no 0.937 0.806 0.555 1e-170
P0C883694 Scarecrow-like protein 33 no no 0.933 0.729 0.560 1e-169
Q3EDH0695 Scarecrow-like protein 31 no no 0.942 0.735 0.550 1e-164
O80933718 Scarecrow-like protein 9 no no 0.915 0.690 0.489 1e-143
Q9LTI5610 Scarecrow-like protein 11 no no 0.846 0.752 0.502 1e-132
Q9SNB8583 Scarecrow-like protein 30 no no 0.800 0.744 0.516 1e-128
Q69VG1571 Chitin-inducible gibberel no no 0.743 0.705 0.310 4e-59
Q9LDL7490 Scarecrow-like transcript no no 0.686 0.759 0.32 3e-57
Q8GVE1544 Chitin-inducible gibberel no no 0.684 0.681 0.32 1e-55
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function desciption
 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/558 (59%), Positives = 419/558 (75%), Gaps = 27/558 (4%)

Query: 2   SSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESY-GFSTEQKEDTSRVV 60
           S   + L  NM  D E  +QFKKG+EEASKFLP  +QL ID++SY   ++  KE+ S V 
Sbjct: 217 SGFGDDLVSNMFKDDELAMQFKKGVEEASKFLPKSSQLFIDVDSYIPMNSGSKENGSEVF 276

Query: 61  VKVEK-EEREN------SPEGSR--GRKNHQR-EDVDLDEERSNKQSALYTEESELSDMF 110
           VK EK +E E+      +P  +R  G+K+H R ED D  EERSNKQSA+Y EESELS+MF
Sbjct: 277 VKTEKKDETEHHHHHSYAPPPNRLTGKKSHWRDEDEDFVEERSNKQSAVYVEESELSEMF 336

Query: 111 DKVLLLHVDSNGKPTMCTKGQG---EDSLLQKGQSNGS---GEKSRSRKQGK--RKDTVD 162
           DK+L   V   GKP +C   Q    E + +   QSNG+   G+KS S       +K+T D
Sbjct: 337 DKIL---VCGPGKP-VCILNQNFPTESAKVVTAQSNGAKIRGKKSTSTSHSNDSKKETAD 392

Query: 163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGT 222
           LRTLL+LCAQAVS +D RTANE+L+QIR+HSS  G+GS+RLAH+FAN LEAR+AG+GT  
Sbjct: 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQI 452

Query: 223 KSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRY 282
            + L S   + SAADMLKAY+ Y+S CPFKK AI+F    +M+ +  A+T+HI+DFGI Y
Sbjct: 453 YTALSS--KKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISY 510

Query: 283 GFQWPMLIQFLSM-RTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341
           GFQWP LI  LS+ R GG P+LRITGIELPQ GFRPAE ++ETG RL +YCQR NVPFEY
Sbjct: 511 GFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEY 570

Query: 342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401
           N IA Q WETIQ+EDLK+   E + VNSLFRF+NLLDETV VN PR++VLKLIRKI P++
Sbjct: 571 NAIA-QKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNV 629

Query: 402 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVI 461
           F+ +I++G+YNAPFFVTRFREA+FH+S++FDM D+ + RED  RLM+E+E YGRE +NV+
Sbjct: 630 FIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVV 689

Query: 462 ACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWM 521
           ACEG ERVERPETYKQWQAR IRAGF+QLPL +ELM+ L  K++  Y K+F +DQ+ NW+
Sbjct: 690 ACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWL 749

Query: 522 LQGWKGRIVFASSCWVPA 539
           LQGWKGRIV+ASS WVP+
Sbjct: 750 LQGWKGRIVYASSLWVPS 767
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|P0C884|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1 Back     alignment and function description
>sp|P0C883|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1 Back     alignment and function description
>sp|Q3EDH0|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=3 Back     alignment and function description
>sp|O80933|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SNB8|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
255586186 815 transcription factor, putative [Ricinus 0.992 0.660 0.704 0.0
224059478 716 GRAS family transcription factor [Populu 0.974 0.737 0.695 0.0
224106453 794 GRAS family transcription factor [Populu 0.985 0.672 0.708 0.0
224106455 762 GRAS family transcription factor [Populu 0.981 0.698 0.657 0.0
378747657 767 scarecrow-like protein 1 [Quercus robur] 0.987 0.697 0.636 0.0
224059480 757 GRAS family transcription factor [Populu 0.981 0.702 0.655 0.0
356547265 723 PREDICTED: scarecrow-like protein 14-lik 0.964 0.723 0.651 0.0
449450910 721 PREDICTED: scarecrow-like protein 14-lik 0.968 0.728 0.624 0.0
125743148 767 SCARECROW-like protein 1 [Castanea sativ 0.983 0.694 0.637 0.0
255586188 764 transcription factor, putative [Ricinus 0.979 0.695 0.646 0.0
>gi|255586186|ref|XP_002533752.1| transcription factor, putative [Ricinus communis] gi|223526340|gb|EEF28639.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/545 (70%), Positives = 451/545 (82%), Gaps = 7/545 (1%)

Query: 1   MSSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESYGFSTEQKEDTSRVV 60
           M S    + QNM SD +SVLQFK+G+EEASKFLP  +QL+IDLES  F+  QKE+   +V
Sbjct: 272 MGSSPSEMVQNMFSDTDSVLQFKRGLEEASKFLPRASQLVIDLESNSFANGQKEEAPVLV 331

Query: 61  VKVEKEERENSPEGSRGRKNHQREDVDLDEERSNKQSALYTEESELSDMFDKVLLLHVDS 120
           +K EK +R +SP+ SRGRKNH RED DL++ RS+KQSA+Y EESE+S++FDKVLL     
Sbjct: 332 MKEEKAKRPSSPDESRGRKNHNREDSDLEQGRSSKQSAVYVEESEISEVFDKVLLW-PGL 390

Query: 121 NGKPTMCTKGQGEDSLLQ----KGQSNGS-GEKSRSRKQGKRKDTVDLRTLLILCAQAVS 175
            G    C     +D+  +      QSNGS G K+RS+KQ K+K+TVDLR+LLILCAQAVS
Sbjct: 391 KGTQWCCGPEVNQDAASKIPQANIQSNGSNGGKTRSKKQSKKKETVDLRSLLILCAQAVS 450

Query: 176 SNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRK-S 234
            ND+RTANEL+KQIRQHSS  GDGSQRLAH FANGLEAR+AGS TG +SF  SLA R+ +
Sbjct: 451 GNDFRTANELVKQIRQHSSPLGDGSQRLAHCFANGLEARLAGSVTGMQSFYTSLASRRRT 510

Query: 235 AADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLS 294
           AAD+L+AYK +L ACPFKKL+I+F  KMIM  +EKA+TLHIVDFG+ YGFQWP+LIQ LS
Sbjct: 511 AADILRAYKTHLHACPFKKLSILFANKMIMHAAEKATTLHIVDFGVSYGFQWPILIQLLS 570

Query: 295 MRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQI 354
           MR GGPP+LRITGIELPQ GFRPAERIEETGRRL +YC+RFNVPFEYN IA+QNWE I+I
Sbjct: 571 MRDGGPPKLRITGIELPQQGFRPAERIEETGRRLARYCERFNVPFEYNSIAAQNWENIRI 630

Query: 355 EDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAP 414
           E+LKIN +EVLAVN L RFKNLLDE V+V+CPRN+VL LIRKIKP+I+V+ I+NGSYNAP
Sbjct: 631 EELKINSNEVLAVNCLARFKNLLDEIVEVDCPRNAVLDLIRKIKPNIYVHCIINGSYNAP 690

Query: 415 FFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPET 474
           FFVTRFREA+FHFSSLFDMFD+T+ RED  R+M E E+YGREAMNV+ACEG ERVERPET
Sbjct: 691 FFVTRFREALFHFSSLFDMFDSTLSREDQGRMMLENEIYGREAMNVVACEGTERVERPET 750

Query: 475 YKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASS 534
           YKQWQ R  RAGFKQLPL QE+MEK   KLK WYHKDFVID+DNNWMLQGWKGRI++ASS
Sbjct: 751 YKQWQVRITRAGFKQLPLEQEVMEKCRHKLKTWYHKDFVIDEDNNWMLQGWKGRIIYASS 810

Query: 535 CWVPA 539
           CWVPA
Sbjct: 811 CWVPA 815

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059478|ref|XP_002299866.1| GRAS family transcription factor [Populus trichocarpa] gi|222847124|gb|EEE84671.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106453|ref|XP_002314171.1| GRAS family transcription factor [Populus trichocarpa] gi|222850579|gb|EEE88126.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106455|ref|XP_002314172.1| GRAS family transcription factor [Populus trichocarpa] gi|222850580|gb|EEE88127.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|378747657|gb|AFC36442.1| scarecrow-like protein 1 [Quercus robur] Back     alignment and taxonomy information
>gi|224059480|ref|XP_002299867.1| GRAS family transcription factor [Populus trichocarpa] gi|222847125|gb|EEE84672.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547265|ref|XP_003542036.1| PREDICTED: scarecrow-like protein 14-like [Glycine max] Back     alignment and taxonomy information
>gi|449450910|ref|XP_004143205.1| PREDICTED: scarecrow-like protein 14-like [Cucumis sativus] gi|449508159|ref|XP_004163236.1| PREDICTED: scarecrow-like protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|125743148|gb|ABG77971.1| SCARECROW-like protein 1 [Castanea sativa] Back     alignment and taxonomy information
>gi|255586188|ref|XP_002533753.1| transcription factor, putative [Ricinus communis] gi|223526341|gb|EEF28640.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.979 0.690 0.586 1.6e-164
TAIR|locus:2025032695 AT1G07520 "AT1G07520" [Arabido 0.835 0.651 0.568 4.4e-141
TAIR|locus:2040701718 AT2G37650 [Arabidopsis thalian 0.845 0.637 0.531 5.4e-130
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.850 0.755 0.502 7.4e-121
TAIR|locus:2075155583 AT3G46600 [Arabidopsis thalian 0.830 0.771 0.508 1e-116
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.784 0.867 0.300 2.9e-55
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.833 0.757 0.309 2.1e-52
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.671 0.881 0.306 7.4e-50
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.809 0.740 0.3 1.8e-48
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.642 0.681 0.314 2.9e-46
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
 Identities = 327/558 (58%), Positives = 410/558 (73%)

Query:     2 SSVNEFLAQNMLSDRESVLQFKKGMEEASKFLPTGNQLIIDLESY-GFSTEQKED----- 55
             S   + L  NM  D E  +QFKKG+EEASKFLP  +QL ID++SY   ++  KE+     
Sbjct:   217 SGFGDDLVSNMFKDDELAMQFKKGVEEASKFLPKSSQLFIDVDSYIPMNSGSKENGSEVF 276

Query:    56 --TSXXXXXXXXXXXXNSPEGSR--GRKNHQR-EDVDLDEERSNKQSALYTEESELSDMF 110
               T              +P  +R  G+K+H R ED D  EERSNKQSA+Y EESELS+MF
Sbjct:   277 VKTEKKDETEHHHHHSYAPPPNRLTGKKSHWRDEDEDFVEERSNKQSAVYVEESELSEMF 336

Query:   111 DKVLLLHVDSNGKPTMCTKGQG---EDSLLQKGQSNGS---GEKSRSRKQGK--RKDTVD 162
             DK+L   V   GKP +C   Q    E + +   QSNG+   G+KS S       +K+T D
Sbjct:   337 DKIL---VCGPGKP-VCILNQNFPTESAKVVTAQSNGAKIRGKKSTSTSHSNDSKKETAD 392

Query:   163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGT 222
             LRTLL+LCAQAVS +D RTANE+L+QIR+HSS  G+GS+RLAH+FAN LEAR+AG+GT  
Sbjct:   393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQI 452

Query:   223 KSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRY 282
              + L S   + SAADMLKAY+ Y+S CPFKK AI+F    +M+ +  A+T+HI+DFGI Y
Sbjct:   453 YTALSS--KKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISY 510

Query:   283 GFQWPMLIQFLSM-RTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341
             GFQWP LI  LS+ R GG P+LRITGIELPQ GFRPAE ++ETG RL +YCQR NVPFEY
Sbjct:   511 GFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEY 570

Query:   342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401
             N IA Q WETIQ+EDLK+   E + VNSLFRF+NLLDETV VN PR++VLKLIRKI P++
Sbjct:   571 NAIA-QKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNV 629

Query:   402 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVI 461
             F+ +I++G+YNAPFFVTRFREA+FH+S++FDM D+ + RED  RLM+E+E YGRE +NV+
Sbjct:   630 FIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVV 689

Query:   462 ACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWM 521
             ACEG ERVERPETYKQWQAR IRAGF+QLPL +ELM+ L  K++  Y K+F +DQ+ NW+
Sbjct:   690 ACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWL 749

Query:   522 LQGWKGRIVFASSCWVPA 539
             LQGWKGRIV+ASS WVP+
Sbjct:   750 LQGWKGRIVYASSLWVPS 767
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0009410 "response to xenobiotic stimulus" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2025032 AT1G07520 "AT1G07520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040701 AT2G37650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075155 AT3G46600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XE58SCL14_ARATHNo assigned EC number0.59850.97970.6905yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS23
GRAS family transcription factor (667 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-139
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  407 bits (1047), Expect = e-139
 Identities = 149/375 (39%), Positives = 224/375 (59%), Gaps = 5/375 (1%)

Query: 163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGT 222
           L  LL+ CA+AVSS D   A  +L ++ Q +S  GD  QRLA +F   L AR+A SG+  
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 223 -KSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIR 281
             +   S +    + ++L AYK++    P+ K       + I++  E    +HI+DF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 282 YGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341
            G QWP LIQ L+ R GGPP LRITGI  PQ  F  AE +EETG RL ++     VPFE+
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401
           N + ++  E + +E L + P E LAVN +F    LLDE+V +  P    L+L++ + P +
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPT--FLRLVKSLNPKV 236

Query: 402 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVI 461
                   ++N+  F+ RF EA+ ++S+LFD  + T+PR+  ER   ERE+ GRE +NV+
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 462 ACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWM 521
           ACEG ERVER ET+ +W+ R  RAGF+ +PL++  +++    L+ +Y   + +++DN  +
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 522 LQGWKGRIVFASSCW 536
           + GWKGR + A+S W
Sbjct: 357 VLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 542
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.62
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.7
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.36
PLN02233261 ubiquinone biosynthesis methyltransferase 94.71
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 94.07
PRK06202232 hypothetical protein; Provisional 94.01
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 92.99
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 91.79
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 90.68
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.62
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 89.41
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 87.33
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 87.25
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 86.03
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 86.02
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 85.87
PRK08317241 hypothetical protein; Provisional 84.83
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 82.81
PLN02336475 phosphoethanolamine N-methyltransferase 81.83
PRK05785226 hypothetical protein; Provisional 81.55
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.48
COG2227243 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- 80.16
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-114  Score=908.15  Aligned_cols=371  Identities=41%  Similarity=0.749  Sum_probs=357.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhccCCCCCccccccCCCCCC---HHHHH
Q 046158          163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKS---AADML  239 (542)
Q Consensus       163 L~~LL~~CA~AV~~~d~~~A~~lL~~I~~~sSp~Gd~~QRLA~yFaeAL~aRl~g~g~~~~~y~~l~s~~~s---~~~~l  239 (542)
                      |++||++||+||++||...|+.+|++|++++||+||++||||+||++||.+||.++++  +.|..+.....+   ..+.+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~--~~~~~~~~~~~~~~~~~~~~   78 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGP--GLYSALPPSSPSPSESSEQL   78 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCc--ccccCCCCccccccchHHHH
Confidence            6899999999999999999999999999999999999999999999999999999887  888776544433   67899


Q ss_pred             HHHHHHhhhCCcchhhHHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChH
Q 046158          240 KAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAE  319 (542)
Q Consensus       240 ~Ay~~f~~~~Pf~kfa~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~  319 (542)
                      .||++|++.|||.||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++  +..
T Consensus        79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~  156 (374)
T PF03514_consen   79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SAD  156 (374)
T ss_pred             HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887  688


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCC
Q 046158          320 RIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKP  399 (542)
Q Consensus       320 ~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P  399 (542)
                      .+++||+||.+||+++||||||++|...+||++++++|++.+||+|||||+|+||||++++....+||+.||+.||+|+|
T Consensus       157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P  236 (374)
T PF03514_consen  157 ELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNP  236 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCC
Confidence            99999999999999999999999976589999999999999999999999999999999988888899999999999999


Q ss_pred             CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHH
Q 046158          400 DIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQ  479 (542)
Q Consensus       400 ~V~v~~e~~~~~nsp~F~~RF~EAL~~YsAlFDsLda~~pr~~~~R~~iE~~~~greI~NvVAcEG~eRvER~E~~~qW~  479 (542)
                      +|||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+
T Consensus       237 ~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~  316 (374)
T PF03514_consen  237 KVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWR  316 (374)
T ss_pred             CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCccccCCHHHHHHHHHHHHhhcCCCcEEEecCCEEEEeECCceEEEEEccc
Q 046158          480 ARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWV  537 (542)
Q Consensus       480 ~R~~rAGF~~~pLs~~~~~qa~~~l~~~y~~~f~v~ed~~~LllgWkgr~L~a~SaW~  537 (542)
                      .||.+|||+++|||++++.||+.+|+.++++||.|+++++||+|||||+||+++|+||
T Consensus       317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999999986668999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 69/515 (13%), Positives = 135/515 (26%), Gaps = 186/515 (36%)

Query: 48  FSTEQKEDTSRVVVKVEKEERE---NSPEGSRGRKNHQREDVDLDEERSNKQSALYTEES 104
           F  +  +D  + ++   KEE +    S +      +           +  +    + EE 
Sbjct: 33  FDCKDVQDMPKSILS--KEEIDHIIMSKD----AVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 105 ELSD---MFDKVLLLHVDSNGKPTMCTKGQGE--DSLLQKGQSNGSGEKSRSRKQGKRKD 159
              +   +      +  +    P+M T+   E  D L    Q     + + SR Q   K 
Sbjct: 87  LRINYKFLMSP---IKTEQRQ-PSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLK- 139

Query: 160 TVDLRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSG 219
              LR                   + L ++R   ++  DG               + GSG
Sbjct: 140 ---LR-------------------QALLELRPAKNVLIDG---------------VLGSG 162

Query: 220 TGTKSFLMSLAPRKSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFG 279
              K+++        A D+  +YKV    C                           DF 
Sbjct: 163 ---KTWV--------ALDVCLSYKV---QCKM-------------------------DFK 183

Query: 280 IRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPF 339
           I   F W      L+++    P   +                      L K   + +  +
Sbjct: 184 I---F-W------LNLKNCNSPETVL--------------------EMLQKLLYQIDPNW 213

Query: 340 EYNCIASQNWETIQIEDLKINPDEVLA----VNSLFRFKNLLD--------ETVDVNCPR 387
                 S N   ++I  ++     +L      N L     +L            +++C  
Sbjct: 214 TSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCK- 267

Query: 388 NSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFH------FSSLFDMFDTTMPRE 441
             +L   R       V   ++ +      +      +             D     +PRE
Sbjct: 268 --ILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 442 DPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQ----ARTI------------RA 485
                           +++IA    + +   + +K          I            R 
Sbjct: 322 VLTTNPR--------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 486 GFKQL---PLNQELMEKLMGKLKAWYHKDFVIDQD 517
            F +L   P +  +   L+  +  W+         
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMV 406

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.14
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.28
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.82
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.57
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.32
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.16
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.87
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 94.82
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.48
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.08
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.78
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.26
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.22
3dp7_A363 SAM-dependent methyltransferase; structural genomi 92.68
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.36
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 92.13
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.06
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 92.02
2r3s_A335 Uncharacterized protein; methyltransferase domain, 91.91
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.84
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 91.76
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 91.7
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 91.33
3f4k_A257 Putative methyltransferase; structural genomics, P 91.29
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 90.66
3hnr_A220 Probable methyltransferase BT9727_4108; structural 90.02
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 89.26
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 89.07
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 88.94
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.83
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 88.57
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 87.4
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 87.33
3gu3_A284 Methyltransferase; alpha-beta protein, structural 87.04
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 86.93
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 86.75
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 85.79
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 85.72
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 85.55
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 84.46
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 83.79
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 83.61
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 83.11
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 82.99
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 82.15
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 81.98
3m70_A286 Tellurite resistance protein TEHB homolog; structu 81.33
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 81.18
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 80.65
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 80.49
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 80.33
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 80.22
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 80.19
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 80.14
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 80.09
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.14  E-value=0.0027  Score=62.74  Aligned_cols=109  Identities=19%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcc
Q 046158          271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWE  350 (542)
Q Consensus       271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E  350 (542)
                      +.-+|+|+|.|.|.    +...|+.+- ++|..+|||||..      ...|+.+.+++.++..  ..+.+|..   ...+
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s------~~ml~~A~~~~~~~~~--~~~v~~~~---~D~~  133 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNS------PAMIERCRRHIDAYKA--PTPVDVIE---GDIR  133 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESC------HHHHHHHHHHHHTSCC--SSCEEEEE---SCTT
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECC------HHHHHHHHHHHHhhcc--CceEEEee---cccc
Confidence            34579999999883    445566543 4567899999963      4567777776654322  23445433   3333


Q ss_pred             cccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCE-EEEEeec
Q 046158          351 TIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDI-FVNSIVN  408 (542)
Q Consensus       351 ~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V-~v~~e~~  408 (542)
                      ++..     .+-.+  |-|.+.|||+.++      -+..+|+.| |.|+|.- |++.+..
T Consensus       134 ~~~~-----~~~d~--v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          134 DIAI-----ENASM--VVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TCCC-----CSEEE--EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccc-----ccccc--ceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEecc
Confidence            3332     22223  3455678888642      245678777 5699984 5555553
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.22
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.81
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.62
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.23
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 95.37
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.37
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.22
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 94.98
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 93.51
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.09
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.87
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.51
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.36
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.36
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 91.2
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 90.3
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 88.07
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 84.43
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 84.21
d1p91a_268 rRNA methyltransferase RlmA {Escherichia coli [Tax 81.04
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=0.013  Score=53.47  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             CCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCc
Q 046158          270 ASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNW  349 (542)
Q Consensus       270 ~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~  349 (542)
                      .+.-||+|+|.|.|.    +...|+.. -..|..+|||||..      .+.++.+.+++.+    .+....++.+. ...
T Consensus        38 ~~~~~vLDlGCGtG~----~~~~l~~~-~~~~~~~v~giD~S------~~ml~~A~~~~~~----~~~~~~~~~~~-~d~  101 (225)
T d1im8a_          38 TADSNVYDLGCSRGA----ATLSARRN-INQPNVKIIGIDNS------QPMVERCRQHIAA----YHSEIPVEILC-NDI  101 (225)
T ss_dssp             CTTCEEEEESCTTCH----HHHHHHHT-CCCSSCEEEEECSC------HHHHHHHHHHHHT----SCCSSCEEEEC-SCT
T ss_pred             CCCCEEEEeccchhh----HHHHHHHh-hcCCCCceEEeCCC------HHHHHHHHHHhHh----hcccchhhhcc-chh
Confidence            345689999999883    33445543 23467999999963      4567766666653    33333333333 212


Q ss_pred             ccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCE-EEEEeec
Q 046158          350 ETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDI-FVNSIVN  408 (542)
Q Consensus       350 E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V-~v~~e~~  408 (542)
                      .       ....+..-+|.|.+.|||+..+      -+..+|+.| |.|+|.- |++.+..
T Consensus       102 ~-------~~~~~~~d~i~~~~~l~~~~~~------d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         102 R-------HVEIKNASMVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             T-------TCCCCSEEEEEEESCGGGSCGG------GHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             h-------ccccccceeeEEeeeccccChh------hHHHHHHHHHHhCCCCceeeccccc
Confidence            1       2223345567777888888542      134677777 6699985 5555543
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure