Citrus Sinensis ID: 046164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MQRYSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGFLQNY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccccccccccccEEEcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHcccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHcccccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MQRYSSTKSLCRKIihhrphhqiqlpitrrpcdvfinhrgtdtKRTIAGLLHDHLSrlrlnpfldsknmkpgdrlFDKIDTAIKHCklgvavfsprycesyFCLHELALIMESRKKVipifydvkpsqlqvpdngtcsRKELQRFSRALEEAKYTVGltfdsingdwsEFLTTATDAVINNLIEveeestanrepmgflqny
Flexible Loop (DISEMBL)
MQRYSSTKSLCRKIihhrphhqiqlpitrrpCDVFINHRGTDTKRTIAGLLHDHLSRLRlnpfldsknmkpGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVkpsqlqvpdngtcSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEveeestanrepmgflqny
Low Complexity Region (SEG)
MQRYSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGFLQNY
Disordered region (IsUnstruct)
*********LCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQV****TC***ELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEV*****************
Disordered Region (DISOPRED)
********************************DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDN**C**KELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGF****
Disordered Region (DISEMBL)
*********LCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGFLQNY
Disordered Region (DISPRO)
***************************TRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGFLQNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRYSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANREPMGFLQNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.564	0.099	0.346	1e-13
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.430	0.211	0.376	2e-09
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.470	0.242	0.356	2e-07
Q9SYC9	571	Vesicle-associated protei	no	no	0.465	0.164	0.324	5e-07
O82500	1095	Putative disease resistan	no	no	0.613	0.113	0.309	1e-06
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.465	0.265	0.31	3e-06
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.623	0.096	0.288	0.0003

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)

Query: 29  RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKL 88
           R   DVF++ RG DT++T    L++ L+   +  F D K ++ G  +  ++  AI+  + 
Sbjct: 9   RWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQF 68

Query: 89  GVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQR 144
            + VFS  Y  S +CL+EL  IME + +    VIPIFYDV PS +         R + + 
Sbjct: 69  AIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHV---------RNQKES 119

Query: 145 FSRALEE 151
           F++A EE
Sbjct: 120 FAKAFEE 126

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 34  VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
           VFIN RG D ++     L   L + ++N F+D +  + G  L    DT I   K+ + +F
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEER-GKYLISLFDT-IGESKIALVIF 81

Query: 94  SPRYCESYFCLHELALIME----SRKKVIPIFY 122
           S  YCES++C+ EL  I E    +R  +IPIFY
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNRLIIIPIFY 114

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 34  VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
           VFI  RG D ++     L   L    +N F+D +N   G  + + + T I+  +L + +F
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFID-ENEFLGSEMANLL-TRIEESELALVIF 74

Query: 94  SPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQ 130
           S  +  S+ CL+ELA I E + +    VIPIFY VKPS ++
Sbjct: 75  SVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 14/108 (12%)

Query: 21  HQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGD--RLFDK 78
           H I LP  +    VFIN RG + + +  G L   +   ++N F D   ++  +   LF +
Sbjct: 351 HGITLPQYQ----VFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNYLFRR 406

Query: 79  IDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFY 122
           I+ +    ++ VA+FS RY ES +CL EL  + E  ++    V+P+FY
Sbjct: 407 IEES----RVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFY 450

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           DVF + RG D +      L        +  F D  ++K    +  ++  AI+  K+ V +
Sbjct: 12  DVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISVVL 70

Query: 93  FSPRYCESYFCLHELALIMESRK----KVIPIFYDVKPSQL--QVPDNG-----TCSRKE 141
           FS  Y  S +CL EL  IM+ ++    KV+P+FY V PS +  Q    G     TC  K 
Sbjct: 71  FSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCCGKT 130

Query: 142 LQR---FSRALEEAKYTVG 157
            +R   + RAL +A   +G
Sbjct: 131 EERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 34  VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
           VFIN RG D +      L   +    +N F+D   +   D +   +   I+  ++ V +F
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV--NLFVRIQESRVAVVIF 73

Query: 94  SPRYCESYFCLHELA----LIMESRKKVIPIFYDVKPSQL 129
           S  Y  S +CL ELA     I +     IPIFY + PS +
Sbjct: 74  SKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSV 113

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 30  RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLG 89
           R  DVF + RG D + +    L   L R +   F+D + ++    +  ++ +AIK  ++ 
Sbjct: 10  RRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDE-IERSRSIGPELLSAIKESRIA 67

Query: 90  VAVFSPRYCESYFCLHELALIMES----RKKVIPIFYDVKPSQL--QVPDNG-----TC- 137
           + +FS  Y  S +CL+EL  I +      + VIPIF+ V  S++  Q  + G     TC 
Sbjct: 68  IVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCK 127

Query: 138 --SRKELQRFSRALEEAKYTVG 157
             S  E Q + +AL       G
Sbjct: 128 AKSEDEKQSWKQALAAVAVMAG 149

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
356519558	185	PREDICTED: TMV resistance protein N-like	0.856	0.935	0.702	2e-68
359496641	194	PREDICTED: TMV resistance protein N [Vit	0.891	0.927	0.657	2e-68
302143050	174	unnamed protein product [Vitis vinifera]	0.797	0.925	0.739	1e-67
359493678	168	PREDICTED: TMV resistance protein N [Vit	0.797	0.958	0.739	1e-67
224078916	156	predicted protein [Populus trichocarpa]	0.772	1.0	0.775	2e-67
356546659	186	PREDICTED: TMV resistance protein N-like	0.797	0.865	0.757	6e-66
255582465	191	transmembrane receptor, putative [Ricinu	0.811	0.858	0.676	3e-65
255555951	202	transmembrane receptor, putative [Ricinu	0.980	0.980	0.634	7e-65
224128205	202	predicted protein [Populus trichocarpa]	0.925	0.925	0.630	9e-65
356557671	208	PREDICTED: TMV resistance protein N-like	0.831	0.807	0.720	1e-64

>gi|356519558|ref|XP_003528439.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 146/188 (77%), Gaps = 15/188 (7%)

Query: 1   MQRYSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRL 60
           MQR  +T  LCRKI              R  CDVFINHRG DTKR IA LL+D L R+++
Sbjct: 1   MQRLPAT--LCRKI-------------ARPACDVFINHRGIDTKRNIAELLYDRLRRMKV 45

Query: 61  NPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPI 120
             FLDS NMKPGDRLFD ID AI  CK+GVAVFSPRYC+SYFCLHELAL+MES+K+V+PI
Sbjct: 46  RSFLDSMNMKPGDRLFDHIDKAILGCKVGVAVFSPRYCDSYFCLHELALLMESKKRVVPI 105

Query: 121 FYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVIN 180
           FYDVKPSQL V DNGTC  KELQRFS ALEEAKYTVGLTFDS+ GDWSE L  A+DAVI 
Sbjct: 106 FYDVKPSQLVVKDNGTCPSKELQRFSLALEEAKYTVGLTFDSLKGDWSELLRDASDAVIM 165

Query: 181 NLIEVEEE 188
           NL+EVEEE
Sbjct: 166 NLLEVEEE 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496641|ref|XP_002271939.2| PREDICTED: TMV resistance protein N [Vitis vinifera] gi|297744868|emb|CBI38327.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 154/181 (85%), Gaps = 1/181 (0%)

Query: 8   KSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSK 67
           +SL + + HH   HQ ++P  + PCDVFINHRG DTK+ +AGL++D L R++L PFLD+K
Sbjct: 3   RSLAKNLCHHLVRHQRRVPTPQNPCDVFINHRGIDTKKNVAGLIYDDLIRMKLRPFLDNK 62

Query: 68  NMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPS 127
           +MKPGD+LFDKID+AI +CKLG+AVFSPRYCESYFCLHEL+LIMES+K+VIPIF DVKPS
Sbjct: 63  SMKPGDKLFDKIDSAIMNCKLGIAVFSPRYCESYFCLHELSLIMESKKRVIPIFVDVKPS 122

Query: 128 QLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEE 187
           +L+V  NG C  +E++RFS AL+EAKYTVGLTFD+++GDWS+F+  A+DAVI NL+E+E 
Sbjct: 123 ELRV-TNGVCPPREVERFSWALQEAKYTVGLTFDTVHGDWSDFVKNASDAVIKNLLELER 181

Query: 188 E 188
           E
Sbjct: 182 E 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143050|emb|CBI20345.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/161 (73%), Positives = 142/161 (88%)

Query: 28  TRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCK 87
           +R+ CDVFINHRG DTKRT+A LL+DHL+ L + PFLD+K MKPGD+LFDKID+AI+ CK
Sbjct: 9   SRQSCDVFINHRGIDTKRTVATLLYDHLTMLNMRPFLDNKTMKPGDKLFDKIDSAIRGCK 68

Query: 88  LGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSR 147
           +GVAVFSP YCESYFCLHELAL MES KKVIPIF DVKPSQL+V DNG+CS+ ELQRF+R
Sbjct: 69  IGVAVFSPHYCESYFCLHELALFMESNKKVIPIFCDVKPSQLRVVDNGSCSQNELQRFNR 128

Query: 148 ALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEE 188
           ALEEAKYTVGL+FDS+ G+WSE +T+A+D VI +LIE+E E
Sbjct: 129 ALEEAKYTVGLSFDSLKGNWSEVVTSASDIVIKSLIELENE 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493678|ref|XP_002282005.2| PREDICTED: TMV resistance protein N [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/161 (73%), Positives = 142/161 (88%)

Query: 28  TRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCK 87
           +R+ CDVFINHRG DTKRT+A LL+DHL+ L + PFLD+K MKPGD+LFDKID+AI+ CK
Sbjct: 3   SRQSCDVFINHRGIDTKRTVATLLYDHLTMLNMRPFLDNKTMKPGDKLFDKIDSAIRGCK 62

Query: 88  LGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSR 147
           +GVAVFSP YCESYFCLHELAL MES KKVIPIF DVKPSQL+V DNG+CS+ ELQRF+R
Sbjct: 63  IGVAVFSPHYCESYFCLHELALFMESNKKVIPIFCDVKPSQLRVVDNGSCSQNELQRFNR 122

Query: 148 ALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEE 188
           ALEEAKYTVGL+FDS+ G+WSE +T+A+D VI +LIE+E E
Sbjct: 123 ALEEAKYTVGLSFDSLKGNWSEVVTSASDIVIKSLIELENE 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078916|ref|XP_002305679.1| predicted protein [Populus trichocarpa] gi|222848643|gb|EEE86190.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 140/156 (89%)

Query: 31  PCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
           PCDVFINHR  DTKRTI+GLL DHLSRLRL+PFLDSKNM+PGD+LFD ID AI  CK+GV
Sbjct: 1   PCDVFINHRCIDTKRTISGLLFDHLSRLRLHPFLDSKNMRPGDKLFDNIDRAIHECKVGV 60

Query: 91  AVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALE 150
           AVFSPRYC+SYFCLHELAL+ME++K+VIPIF DVKPSQL V DNG C  +ELQRF+ ALE
Sbjct: 61  AVFSPRYCDSYFCLHELALLMETKKRVIPIFCDVKPSQLHVKDNGLCPGEELQRFTYALE 120

Query: 151 EAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVE 186
           EAKYTVGLTFD++ G+WS+FLTTA DAV++NLIEV+
Sbjct: 121 EAKYTVGLTFDTLEGNWSQFLTTAMDAVVHNLIEVD 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546659|ref|XP_003541741.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 137/161 (85%)

Query: 27  ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHC 86
           I R  CDVFINHRG DTKR ++GLL+D+L+R+ +  FLDS NMKPGDRLFD ID AI  C
Sbjct: 5   IARPACDVFINHRGIDTKRNVSGLLYDNLTRMGVRSFLDSMNMKPGDRLFDHIDRAILGC 64

Query: 87  KLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFS 146
           K+GVAVFSPRYC+SYFCLHELAL+MES K+V+PIFYDVKPSQL V DNGT S KELQRFS
Sbjct: 65  KVGVAVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSQLVVKDNGTRSPKELQRFS 124

Query: 147 RALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEE 187
            ALEEAK TVGLTFDS+NGDWSE+L  A+DAVI NL EVEE
Sbjct: 125 LALEEAKNTVGLTFDSLNGDWSEWLRNASDAVIMNLREVEE 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582465|ref|XP_002532019.1| transmembrane receptor, putative [Ricinus communis] gi|223528314|gb|EEF30358.1| transmembrane receptor, putative [Ricinus communis]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 144/164 (87%)

Query: 30  RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLG 89
           +PCDVFINHRGTDTKRT+A LL+DHLSRL L+PFLD+KNMKPGD+LF+ I+ AI+ CK+G
Sbjct: 7   QPCDVFINHRGTDTKRTVATLLYDHLSRLNLSPFLDNKNMKPGDKLFEHINEAIRQCKIG 66

Query: 90  VAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRAL 149
           VAVFSPRYCESYFCLHELAL+ME++KKVIPIF D+KPS++++ D G CS +E+++F+ A+
Sbjct: 67  VAVFSPRYCESYFCLHELALMMETKKKVIPIFCDIKPSEIRIVDKGLCSEEEIKKFNLAI 126

Query: 150 EEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANR 193
           EEAKYTVGLTFDS+ G+WSE +T A++ VI++LIE++ E    R
Sbjct: 127 EEAKYTVGLTFDSLKGNWSEVVTNASEIVIDSLIEIQNEKHIRR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555951|ref|XP_002519010.1| transmembrane receptor, putative [Ricinus communis] gi|223541673|gb|EEF43221.1| transmembrane receptor, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 157/205 (76%), Gaps = 7/205 (3%)

Query: 1   MQRYSST-KSLCRKIIHHRPHHQIQLP--ITRRPCDVFINHRGTDTKRTIAGLLHDHLSR 57
           MQR+ ST K+L RKI+H+  HH I  P    +  CD+FINHRG DTKRTI+GLL++HLSR
Sbjct: 1   MQRFPSTAKNLSRKILHY--HHLINTPKPAVKPACDIFINHRGIDTKRTISGLLYNHLSR 58

Query: 58  LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKV 117
           L  NPFLDSKNMKPGDRLFDKI++AIK+CKLGVAVFSPRYCESYFCLHELALIME++++V
Sbjct: 59  LGYNPFLDSKNMKPGDRLFDKINSAIKNCKLGVAVFSPRYCESYFCLHELALIMETKERV 118

Query: 118 IPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDA 177
           IPIF DVKPSQLQVPDNG+   +EL+RF     E    + L   S   DWSEFL  ATDA
Sbjct: 119 IPIFCDVKPSQLQVPDNGSRPIQELRRFEXXXXE-DLKMLLNRQSTR-DWSEFLIMATDA 176

Query: 178 VINNLIEVEEESTANREPMGFLQNY 202
           ++ NLIE+EE  ++ + P  F+  Y
Sbjct: 177 IVKNLIELEEGGSSFKHPKNFVHKY 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128205|ref|XP_002329107.1| predicted protein [Populus trichocarpa] gi|222869776|gb|EEF06907.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 150/192 (78%), Gaps = 5/192 (2%)

Query: 5   SSTKSLCRKIIHHRPHHQIQLPITRR---PCDVFINHRGTDTKRTIAGLLHDHLSRLRLN 61
           SS  +  R+ +   P   IQ  +T R   PCDVFINHRG DTKRT+  LL+DHL RL L+
Sbjct: 4   SSIVNFPRQFLRQYP--SIQPAVTSRIAKPCDVFINHRGIDTKRTVVTLLYDHLFRLNLH 61

Query: 62  PFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIF 121
           PFLD+KNMKPGD+LFD I++AI+ CK+GV VFSPRYCESYFCLHELALIMES+KKVIPIF
Sbjct: 62  PFLDNKNMKPGDKLFDNINSAIRKCKVGVTVFSPRYCESYFCLHELALIMESKKKVIPIF 121

Query: 122 YDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINN 181
            D+KPSQL+V ++G C  ++++RF  ALEEAKYTVGLTFDS+ G+WSE +T+A+D VI  
Sbjct: 122 CDIKPSQLRVVNDGKCPMEDIRRFRWALEEAKYTVGLTFDSLKGNWSEVVTSASDIVIET 181

Query: 182 LIEVEEESTANR 193
           L+E+E E    R
Sbjct: 182 LVELESEKQMQR 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557671|ref|XP_003547138.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 137/168 (81%)

Query: 27  ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHC 86
           I R  CDVFINHRG DTK+ +AGLL+D+L+R  +  FLDS NMKPGDRLFD ID AI  C
Sbjct: 12  IARTACDVFINHRGIDTKKNVAGLLYDNLTRNGVRAFLDSMNMKPGDRLFDHIDRAILGC 71

Query: 87  KLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFS 146
           K+GVAVFSPRYC+SYFCLHELAL+MES K+V+PIFYDVKPSQL V DNGT   K+LQRF 
Sbjct: 72  KVGVAVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSQLVVKDNGTRPHKDLQRFC 131

Query: 147 RALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEEESTANRE 194
            ALEEAK TVGLTFDS+NGDWSE L  A+DAVI NL+EVEEE    R+
Sbjct: 132 LALEEAKNTVGLTFDSLNGDWSELLRNASDAVIMNLLEVEEERKHARK 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:1006230674	188	AT1G61105 [Arabidopsis thalian	0.777	0.835	0.687	4.2e-56
TAIR|locus:2011541	199	AT1G52900 [Arabidopsis thalian	0.762	0.773	0.651	4.1e-49
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.811	0.596	0.318	3.8e-14
TAIR|locus:2155382	255	AT5G44920 [Arabidopsis thalian	0.747	0.592	0.322	7.9e-14
TAIR|locus:2206495	387	AT1G57670 [Arabidopsis thalian	0.787	0.410	0.320	1.2e-13
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.673	0.366	0.349	1.8e-13
TAIR|locus:2156579	1190	AT5G48770 [Arabidopsis thalian	0.816	0.138	0.318	1.9e-13
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.509	0.271	0.355	2e-13
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.668	0.767	0.328	2.7e-13
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.668	0.355	0.328	7e-13

TAIR|locus:1006230674 AT1G61105 [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 108/157 (68%), Positives = 132/157 (84%)

Query:    31 PCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
             PCD+FINHRG DTK+TI+GLL+D  +R RL  FLDSK++KPGDRLF +ID AIK C +G+
Sbjct:    28 PCDIFINHRGIDTKKTISGLLYDCFTRQRLTAFLDSKSLKPGDRLFVEIDMAIKACGVGI 87

Query:    91 AVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALE 150
             AVFSPRYC+SYFCLHELAL+++++K+VIPIF DVKPS+L V D+ T    E++RF  ALE
Sbjct:    88 AVFSPRYCDSYFCLHELALLVKNKKRVIPIFCDVKPSELCVKDDKTRPAAEIRRFQLALE 147

Query:   151 EAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEE 187
             EAKYTVGLTFD+ NGDWSEFL  A+DAV  NL+EVEE
Sbjct:   148 EAKYTVGLTFDTSNGDWSEFLAMASDAVTKNLLEVEE 184

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2011541 AT1G52900 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 101/155 (65%), Positives = 120/155 (77%)

Query:    33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             DVFINHRG+DTKR IA LL+D+L    L PFLDSKNMKPGD+LFD I+ AI   K+ V V
Sbjct:    39 DVFINHRGSDTKRNIATLLYDNLKSRNLRPFLDSKNMKPGDKLFDHINNAILTSKVAVTV 98

Query:    93 FSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVP-DNGTCSRKELQRFSRALEE 151
             FSP YC+SYFCLHELALIMESRK+VIPIF D+KPSQL V  +  TCS  E+QRF  AL+E
Sbjct:    99 FSPNYCDSYFCLHELALIMESRKRVIPIFCDIKPSQLDVMIERVTCSDDEIQRFRWALQE 158

Query:   152 AKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVE 186
             AK  VGLTFDS  G+ SE +T A+D ++  L+E+E
Sbjct:   159 AKDIVGLTFDSYKGNLSEVVTVASDVIVERLVELE 193

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 57/179 (31%), Positives = 84/179 (46%)

Query:    33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             DVF++ RG DT+R     L+  L R ++  F D K ++ G R+  ++  AI+  K  V V
Sbjct:    10 DVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVV 69

Query:    93 FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNGTCSRKELQRFS 146
              S  Y  S +CL EL  IM+   K    V+PIFY V P  L  Q+ D     +K   R  
Sbjct:    70 VSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREE 129

Query:   147 RALEEAKYTVGLT-FDSINGD----WSE---FLTTATDAVINNLIEVEEESTANREPMG 197
                + A +   LT   SI+G+    W +    +    D +  NL+ V   S   R+ +G
Sbjct:   130 DHEKVASWRRALTSLASISGECSLKWEDEANLVDEIADKISKNLMTVTTISNG-RDLVG 187

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2155382 AT5G44920 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 52/161 (32%), Positives = 78/161 (48%)

Query:    22 QIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDT 81
             Q+Q P++ +   VFIN RG + +      L   L    +N F+D+K  K G RL   + T
Sbjct:     4 QVQEPLSDQ---VFINFRGDELREIFVNHLELQLRNAGINVFIDTKEQK-GRRL-QYLFT 58

Query:    82 AIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTC 137
              IK  K+ +A+FS RYCES +CL EL  + E  K+    VIPIFY+V+   ++   N   
Sbjct:    59 RIKKSKIALAIFSKRYCESKWCLDELVTMNEQMKEKKLVVIPIFYNVRSDDVKRAANPDG 118

Query:   138 SRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAV 178
                    FS   ++ K       + + G W   L + T  +
Sbjct:   119 EGNLDGEFSLPFKQLKQNHAGEPERVEG-WERALRSVTKRI 158

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2206495 AT1G57670 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 58/181 (32%), Positives = 90/181 (49%)

Query:    25 LPITRRPCD-VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGD--RLFDKIDT 81
             + I  RP + VFIN RG D +      L D L R  +N F+D+   K  D   LF +I+ 
Sbjct:     1 MAILSRPVNQVFINFRGKDIRHGFVSHLKDALKRKNINFFIDTHEQKGRDLNHLFKRIEE 60

Query:    82 AIKHCKLGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNG 135
             A     + + + SPRY ES +CL EL  IM+  +K    VIPIFY V+   +  Q  + G
Sbjct:    61 AT----IALVILSPRYGESKWCLEELTTIMDQEEKGQMIVIPIFYKVRTEDVEKQTGEFG 116

Query:   136 ----TC----SRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLIEVEE 187
                 +C    S +E++++  AL+     +GLT D    + ++F+     AV   L  ++ 
Sbjct:   117 HMFWSCDEEASLEEMEKWQVALKAVCNKIGLTLDLKRSE-AKFIKKVLKAVEEVLTTIQS 175

Query:   188 E 188
             +
Sbjct:   176 D 176

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 50/143 (34%), Positives = 70/143 (48%)

Query:    33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             DVF++ RG DT+R     L+    R ++  F D K ++ G R+  ++  AI+  K  V V
Sbjct:    10 DVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVV 69

Query:    93 FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNGTCSRKELQRFS 146
              S  Y  S +CL EL  IM+   K    V+PIFY V P  L  Q+ D     +K   R  
Sbjct:    70 VSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREE 129

Query:   147 RALEEAKYTVGLT-FDSINGDWS 168
                + A +   LT   SI+GD S
Sbjct:   130 DHEKVASWRRALTSLASISGDCS 152

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2156579 AT5G48770 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 56/176 (31%), Positives = 90/176 (51%)

Query:    31 PC--DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKL 88
             PC  DVF++ RG DT+RTI   L+  L    +  F D ++++ GD +   +  AI+  K 
Sbjct:    11 PCNYDVFLSFRGEDTRRTIVSHLYAALGAKGIITFKDDQDLEVGDHISSHLRRAIEGSKF 70

Query:    89 GVAVFSPRYCESYFCLHELALIME----SRKKVIPIFYDVKPSQLQVPDNGTCSRKELQR 144
              V V S RY  S +CL EL LIME     + KV+P+FY+V PS ++    G+   +  Q 
Sbjct:    71 AVVVLSERYTTSRWCLMELQLIMELYNLGKLKVLPLFYEVDPSDVR-HQRGSFGLERYQG 129

Query:   145 FSRALEEAKYTVGLTF-DSINGDWSEFLTTATDAV-INNLIEVEEESTANREPMGF 198
                A    ++ V L    +++G  S +   A +A+ +  ++EV     A+ +   F
Sbjct:   130 PEFADIVQRWRVALCMVANLSGMVSRYC--ADEAMMLEEIVEVISSRLASMQATSF 183

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 38/107 (35%), Positives = 62/107 (57%)

Query:    28 TRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCK 87
             T +  DVF++ RG DT+RT    L+  L  + +  F D   ++ G R+   +  AI++ K
Sbjct:    11 TPQKFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSK 70

Query:    88 LGVAVFSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQ 130
             + V + S  Y  S +CL EL +IM+  KK    V+PIFY+V+P+ ++
Sbjct:    71 IAVVIISKNYSASPWCLQELVMIMDVEKKGSIIVMPIFYNVEPAHVR 117

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 47/143 (32%), Positives = 72/143 (50%)

Query:    33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             DVF++ RG DT+      L+  L R  +  F D K ++ G R   ++ + I+  +  V V
Sbjct:    10 DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query:    93 FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRA 148
              S  Y  S +CL EL  IM+  KK    V+PIFY V+P+ ++    G  + +  +  SR 
Sbjct:    70 VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW-QTGVLAEQFKKHASRE 128

Query:   149 LEEA--KYTVGLT-FDSINGDWS 168
               E   K+   LT F  ++GD S
Sbjct:   129 DPEKVLKWRQALTNFAQLSGDCS 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 47/143 (32%), Positives = 73/143 (51%)

Query:    33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             DVF++ RG DT++     L+  L R  +  F D K ++ G R+  ++   I+  +  V V
Sbjct:    10 DVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVV 69

Query:    93 FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRA 148
              S  Y  S +CL EL  IM+  KK    V+PIFY V+P+ ++    G  + +  +  SR 
Sbjct:    70 VSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW-QTGVLAEQFKKHGSRE 128

Query:   149 LEEA--KYTVGLT-FDSINGDWS 168
               E   K+   LT F  ++GD S
Sbjct:   129 DHEKVLKWRQALTNFAQLSGDCS 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011772001 SubName- Full=Chromosome undetermined scaffold_337, whole genome shotgun sequence; (194 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-116
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	6e-23
pfam13676	102	pfam13676, TIR_2, TIR domain	6e-19
pfam01582	135	pfam01582, TIR, TIR domain	6e-18
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-08

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score =  328 bits (842), Expect = e-116
 Identities = 131/187 (70%), Positives = 156/187 (83%), Gaps = 4/187 (2%)

Query: 2   QRYSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLN 61
            + SST  L  ++  H P        + +PCDVFINHRG DTKRTIA LL+DHLSRL L 
Sbjct: 1   MKRSSTAQLNNRLFLHYPS----SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLR 56

Query: 62  PFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIF 121
           PFLD+KNMKPGD+LFDKI++AI++CK+GVAVFSPRYCESYFCLHELALIMES+K+VIPIF
Sbjct: 57  PFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIF 116

Query: 122 YDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINN 181
            DVKPSQL+V DNGTC  +E++RF+ ALEEAKYTVGLTFDS+ G+WSE +T A+DAVI N
Sbjct: 117 CDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKN 176

Query: 182 LIEVEEE 188
           LIE+EEE
Sbjct: 177 LIELEEE 183

Length = 187

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 89.3 bits (222), Expect = 6e-23
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 32  CDVFINHRGT-DTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
            DVFI++ G  D +      L + L    L  F+D  + +PG    ++ID AI+  ++ +
Sbjct: 2   YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFID--DFEPGGGDLEEIDEAIEKSRIAI 59

Query: 91  AVFSPRYCESYFCLHELALIMESR-----KKVIPIFYDVKPSQLQVPDN--GTCSRKELQ 143
            V SP Y ES +CL EL   +E+       +VIPIFY+V PS ++          +K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 144 RFSRALEEAKYTVGLTFDSI 163
           ++    +E  +   L     
Sbjct: 120 KWPEDEKEQFWKKALYAVPS 139

Length = 140

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 77.6 bits (192), Expect = 6e-19
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 34  VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
           VFI++   D  R  A  L D L    +  +LD  ++ PG+   D+I+ A++   + + + 
Sbjct: 1   VFISYASAD--REWAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLL 57

Query: 94  SPRYCESYFCLHELALIMESRKKVIPIFYD 123
           SP Y  S +C  E    +E  K++IP+  +
Sbjct: 58  SPAYLASPWCRAEWGAALERGKRLIPVRLE 87

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 34  VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
           VF++  G D + T    L   L    +   +D ++  PG+ + + +  AI+  +  + +F
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 94  SPRYCESYFCLHELALIMESR------KKVIPIFYDVKPSQL 129
           S  Y  S +CL EL  I++        K ++PIFY V PS +
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDV 102

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           DVF +  G D + T        L R  +  F D++ ++    L  ++  AI+  ++ V V
Sbjct: 14  DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVV 72

Query: 93  FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNG-----TCSRK 140
           FS  Y  S +CL+EL  I+  +++    VIP+FY + PS +  Q  D G     TC  K
Sbjct: 73  FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK 131

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.86
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.85
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.76
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.5
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.84
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.8
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.82
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.41
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	92.87
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	92.35
COG4271	233	Predicted nucleotide-binding protein containing TI	87.05
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	80.43

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=6.8e-52  Score=336.62  Aligned_cols=183  Identities=72%  Similarity=1.170  Sum_probs=170.8

Q ss_pred             chhhHHHHHHhhcCCCCCcCCCCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhh
Q 046164            5 SSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIK   84 (202)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~   84 (202)
                      |||..+-.+.+-|.++++..    ..+|||||||+|+|+|++|++||+.+|.++||+||+|+.++.+|+.+.+.|.+||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~----~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe   79 (187)
T PLN03194          4 SSTAQLNNRLFLHYPSSSSS----AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR   79 (187)
T ss_pred             hHHHHHhhhhhcccccCCCC----CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH
Confidence            67888888888888766543    67899999999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEecCCCCccCCCCCccchhhhHHHHHHHHHHHHhcCCcccCCC
Q 046164           85 HCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSIN  164 (202)
Q Consensus        85 ~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~v~p~~vr~~~~~~~~~e~~~~W~~AL~~v~~~~G~~~~~~~  164 (202)
                      +|+++|+||||+|++|.||++||++|+++++.||||||+|+|++||+|..+.+.++++++|+.||++|++++|++++..+
T Consensus        80 eSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~~~  159 (187)
T PLN03194         80 NCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLK  159 (187)
T ss_pred             hCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999877888899999999999999999999987656


Q ss_pred             CCHHHHHHHHHHHHHHHhhhhcccccc
Q 046164          165 GDWSEFLTTATDAVINNLIEVEEESTA  191 (202)
Q Consensus       165 ~~e~~~i~~Iv~~v~~~L~~~~~~~~~  191 (202)
                      ++|+++|++||+.|.++|..+++|..+
T Consensus       160 ~~e~e~i~~iv~~v~k~l~~~~~~~~~  186 (187)
T PLN03194        160 GNWSEVVTMASDAVIKNLIELEEEKSV  186 (187)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            899999999999999999999987643

>PLN03210 Resistant to P

Probab=100.00  E-value=5.4e-40  Score=328.58  Aligned_cols=167  Identities=23%  Similarity=0.409  Sum_probs=150.7

Q ss_pred             CCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164           26 PITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH  105 (202)
Q Consensus        26 ~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~  105 (202)
                      +++.++|||||||||+|+|++|++||+.+|.++||.+|+|+ ++++|+.+.+++.+||++|+++|||||++|++|.||++
T Consensus         7 ~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~   85 (1153)
T PLN03210          7 SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN   85 (1153)
T ss_pred             CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence            44689999999999999999999999999999999999987 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc----CceecEEEecCCCCccCCCCCcc-----------chhhhHHHHHHHHHHHHhcCCcccCCCCCHHHH
Q 046164          106 ELALIMESR----KKVIPIFYDVKPSQLQVPDNGTC-----------SRKELQRFSRALEEAKYTVGLTFDSINGDWSEF  170 (202)
Q Consensus       106 EL~~i~~~~----~~ViPVfy~v~p~~vr~~~~~~~-----------~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~~  170 (202)
                      ||++|++|+    +.|+||||+|+|++||+|. |.|           +++++++|+.||++|++++|+++.. +++|+++
T Consensus        86 el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~-g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~E~~~  163 (1153)
T PLN03210         86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT-GDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN-WPNEAKM  163 (1153)
T ss_pred             HHHHHHHhhhhcCceEEEEEecccHHHHhhcc-chHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC-CCCHHHH
Confidence            999999986    4899999999999999998 443           5678999999999999999999875 7899999


Q ss_pred             HHHHHHHHHHHhhhhcccccccccccc
Q 046164          171 LTTATDAVINNLIEVEEESTANREPMG  197 (202)
Q Consensus       171 i~~Iv~~v~~~L~~~~~~~~~~~~~~g  197 (202)
                      |++||++|+++|...+.  ......||
T Consensus       164 i~~Iv~~v~~~l~~~~~--~~~~~~vG  188 (1153)
T PLN03210        164 IEEIANDVLGKLNLTPS--NDFEDFVG  188 (1153)
T ss_pred             HHHHHHHHHHhhccccC--cccccccc
Confidence            99999999999976543  23334555

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.86  E-value=1e-22  Score=158.98  Aligned_cols=116  Identities=28%  Similarity=0.466  Sum_probs=98.1

Q ss_pred             EEEeccccccchhHHHHHHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHH
Q 046164           34 VFINHRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIM  111 (202)
Q Consensus        34 VFISy~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~  111 (202)
                      |||||++.+++..|+.+|..+|++.  |+++|++++|+.+|..+.+++.++|++|+++|+|+|++|++|.||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999998445789999999999999  99999999999999999999999999999999999999999999999999998


Q ss_pred             Hh----c--CceecEEEecCCCCcc-CCCCCc----------c-c----hhhhHHHHHHHH
Q 046164          112 ES----R--KKVIPIFYDVKPSQLQ-VPDNGT----------C-S----RKELQRFSRALE  150 (202)
Q Consensus       112 ~~----~--~~ViPVfy~v~p~~vr-~~~~~~----------~-~----~e~~~~W~~AL~  150 (202)
                      ++    +  +.|+|||+++.+.+++ .+. +.          . .    .+....|+.++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQS-LRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHH-HHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhh-HHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            74    2  5899999999999999 343 11          1 1    345678988875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.85  E-value=2.7e-21  Score=149.12  Aligned_cols=101  Identities=36%  Similarity=0.617  Sum_probs=86.4

Q ss_pred             CccEEEeccc-cccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHH
Q 046164           31 PCDVFINHRG-TDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELAL  109 (202)
Q Consensus        31 ~ydVFISy~~-~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~  109 (202)
                      .|||||||++ .+....|+.+|...|...|+.+|.|+..+..|  ...+|.++|++|+++|+|+||+|..|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~--~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGG--DLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccc--hHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999998 45667999999999999999999997643333  33399999999999999999999999999999999


Q ss_pred             HHHh-----cCceecEEEecCCCCccCCC
Q 046164          110 IMES-----RKKVIPIFYDVKPSQLQVPD  133 (202)
Q Consensus       110 i~~~-----~~~ViPVfy~v~p~~vr~~~  133 (202)
                      +++.     .++||||+++..|.++..+.
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~  107 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQP  107 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence            9874     46999999998887676654

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.76  E-value=1.9e-19  Score=132.50  Aligned_cols=87  Identities=30%  Similarity=0.529  Sum_probs=77.7

Q ss_pred             EEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHh
Q 046164           34 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMES  113 (202)
Q Consensus        34 VFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~  113 (202)
                      |||||+++|.  .++..|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+.+|+++||+|..|+||..|+..+.+.
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~   77 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKR   77 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCT
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHC
Confidence            8999999884  689999999999999999997 8999999999999999999999999999999999999999999888


Q ss_pred             cCceecEEEe
Q 046164          114 RKKVIPIFYD  123 (202)
Q Consensus       114 ~~~ViPVfy~  123 (202)
                      +++||||.++
T Consensus        78 ~~~iipv~~~   87 (102)
T PF13676_consen   78 GKPIIPVRLD   87 (102)
T ss_dssp             SESEEEEECS
T ss_pred             CCEEEEEEEC
Confidence            8899999964

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.50  E-value=2.3e-13  Score=124.16  Aligned_cols=155  Identities=17%  Similarity=0.260  Sum_probs=122.3

Q ss_pred             hhcCCCCCcCCCCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164           15 IHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS   94 (202)
Q Consensus        15 ~~~~~~~~~~~~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S   94 (202)
                      ..|+...+.+..  .++.||||||++. +....++.|...|+-+|++||+|.+.+..|. +.+.+.+.|..++.+|+|+|
T Consensus       598 a~H~~~v~~a~~--skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLt  673 (832)
T KOG3678|consen  598 AKHPDDVEVAML--SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLT  673 (832)
T ss_pred             hcCCCccccccc--cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeC
Confidence            345555555543  7889999999965 4678999999999999999999999898886 57789999999999999999


Q ss_pred             CCCcC--------ChhhHHHHHHHHHhcCceecEEEecCCCCccCCCCCccchhhhHHHHHHHHHHHHhcCCcccCCCCC
Q 046164           95 PRYCE--------SYFCLHELALIMESRKKVIPIFYDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGD  166 (202)
Q Consensus        95 ~~y~~--------S~wc~~EL~~i~~~~~~ViPVfy~v~p~~vr~~~~~~~~~e~~~~W~~AL~~v~~~~G~~~~~~~~~  166 (202)
                      |+...        -+|...||.-++++++.|||||-..  .+.         +++-..-.+.+.-+..+.|..|.+  .+
T Consensus       674 P~sLDr~lnD~nCeDWVHKEl~~Afe~~KNIiPI~D~a--FE~---------Pt~ed~iPnDirmi~kyNGvKWvH--dY  740 (832)
T KOG3678|consen  674 PNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIFDTA--FEF---------PTKEDQIPNDIRMITKYNGVKWVH--DY  740 (832)
T ss_pred             cchHHHHhccccHHHHHHHHHHHHHHhcCCeeeeeccc--ccC---------CCchhcCcHHHHHHHhccCeeeeh--hh
Confidence            98653        4699999999999999999998541  000         011112233445577889998874  68


Q ss_pred             HHHHHHHHHHHHHHHhhhhc
Q 046164          167 WSEFLTTATDAVINNLIEVE  186 (202)
Q Consensus       167 e~~~i~~Iv~~v~~~L~~~~  186 (202)
                      +..++.|||+-+...|++..
T Consensus       741 QdA~maKvvRFitGe~nRtt  760 (832)
T KOG3678|consen  741 QDACMAKVVRFITGELNRTT  760 (832)
T ss_pred             HHHHHHHHHHHHhccccCCC
Confidence            89999999999999998855

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.84  E-value=7.1e-09  Score=80.05  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             ccEEEeccccccchhHHHHHHHHHhcC-------CCee-E---------ecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164           32 CDVFINHRGTDTKRTIAGLLHDHLSRL-------RLNP-F---------LDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS   94 (202)
Q Consensus        32 ydVFISy~~~D~r~~fv~~L~~~L~~~-------Gi~v-f---------~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S   94 (202)
                      |.|||||++.|.. ..+..|...+...       .+.. |         -+..+......+...|.++|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999988753 4677777777662       2221 1         1222223345788999999999999999999


Q ss_pred             CCCcCChhhHHHHHHHHHhcCceecEEEe
Q 046164           95 PRYCESYFCLHELALIMESRKKVIPIFYD  123 (202)
Q Consensus        95 ~~y~~S~wc~~EL~~i~~~~~~ViPVfy~  123 (202)
                      ++...|.|+..|+..+++.+++||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKKGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTTT---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHHCCCCEEEEECC
Confidence            99999999999999999999999998653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.80  E-value=4.4e-05  Score=59.68  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             cEEEeccccccc-hhHHHHHHHHHhcC-CCeeEecCCCCCC--CCcchHHHHHhhhhcceEEEEeCCCC
Q 046164           33 DVFINHRGTDTK-RTIAGLLHDHLSRL-RLNPFLDSKNMKP--GDRLFDKIDTAIKHCKLGVAVFSPRY   97 (202)
Q Consensus        33 dVFISy~~~D~r-~~fv~~L~~~L~~~-Gi~vf~D~~~l~~--G~~i~~~i~~aI~~S~i~IvV~S~~y   97 (202)
                      -|||||+..... ...|..|...|++. |+.|.+|..+...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999974432 25688999999999 9999999987743  65677778888999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.82  E-value=0.0047  Score=47.77  Aligned_cols=86  Identities=22%  Similarity=0.407  Sum_probs=65.9

Q ss_pred             cEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCC-CcC------------
Q 046164           33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPR-YCE------------   99 (202)
Q Consensus        33 dVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~-y~~------------   99 (202)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+-.+....|..+.+.+.+.+.+++.+|++++|+ ...            
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 553  678889999998899876656667899999999999999999999999984 221            


Q ss_pred             ChhhHHHHHHHHHh-c-CceecEE
Q 046164          100 SYFCLHELALIMES-R-KKVIPIF  121 (202)
Q Consensus       100 S~wc~~EL~~i~~~-~-~~ViPVf  121 (202)
                      ..-.+.|+..++.. + ++++-+.
T Consensus        78 R~NVifE~G~f~g~LGr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGKLGRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhhcCcceEEEEE
Confidence            12356788888764 3 4566554

Their exact function has not, as yet, been defined.

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.41  E-value=0.6  Score=34.64  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHHhcCCCeeEecCCC-CC---CCCcchHH----HHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcC
Q 046164           44 KRTIAGLLHDHLSRLRLNPFLDSKN-MK---PGDRLFDK----IDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRK  115 (202)
Q Consensus        44 r~~fv~~L~~~L~~~Gi~vf~D~~~-l~---~G~~i~~~----i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~  115 (202)
                      ...+...+.+.|++.|+.+|...+. ..   .+..+...    -.++|++|+++|+++.+.- .+.=+.-|+..+...++
T Consensus        12 ~~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk   90 (113)
T PF05014_consen   12 QKARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK   90 (113)
T ss_dssp             HHHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC
Confidence            3567889999999999999876531 11   12233333    3468999999999998755 55667889999999998


Q ss_pred             ceecEEEe
Q 046164          116 KVIPIFYD  123 (202)
Q Consensus       116 ~ViPVfy~  123 (202)
                      +|+-+.-+
T Consensus        91 pv~~~~~d   98 (113)
T PF05014_consen   91 PVILLTED   98 (113)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            77665433

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=92.87  E-value=0.49  Score=33.45  Aligned_cols=67  Identities=18%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             cEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCC
Q 046164           33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCES  100 (202)
Q Consensus        33 dVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S  100 (202)
                      .||||-.-.|-. .--..|.+.+.+.|.....-+.=-..+....+...+.|++|+++|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389997766642 3456678888877775533221112345556677899999999999999998754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=92.35  E-value=0.23  Score=43.00  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             CCCCCccEEEeccccccchhHHHHHHHHHhcC--CCeeEecCC---CCCCCCcchHHHHHhh-hhcceEEEEeCCCCcCC
Q 046164           27 ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRL--RLNPFLDSK---NMKPGDRLFDKIDTAI-KHCKLGVAVFSPRYCES  100 (202)
Q Consensus        27 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~---~l~~G~~i~~~i~~aI-~~S~i~IvV~S~~y~~S  100 (202)
                      +..+.||+=+||.|+-  ++.|..+..+++..  -+..|.|-.   -+-+|+ +.+-+...- ..|+..+|....+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence            3588999999999975  37899999999843  456777753   233443 222222222 57888899999999999


Q ss_pred             hhhHHHHHHHHHhc--CceecEEE-ecCCCC
Q 046164          101 YFCLHELALIMESR--KKVIPIFY-DVKPSQ  128 (202)
Q Consensus       101 ~wc~~EL~~i~~~~--~~ViPVfy-~v~p~~  128 (202)
                      .||.-|-..+-+..  +.+.||.| .++-+.
T Consensus       250 ~~c~~E~~~~r~~~~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         250 STCHIEGLEGRLNPILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeeccchhhccccccccccceEEEEecCCcc
Confidence            99999976664432  36777766 344433

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=87.05  E-value=6  Score=33.17  Aligned_cols=118  Identities=20%  Similarity=0.287  Sum_probs=73.5

Q ss_pred             HHHHHHhhcCCC-CCcCCCCCCCCccEEEeccccccchhHHHHHHHHHhc-CCC-eeEecCCCCCCCCcchHHHHHhhhh
Q 046164            9 SLCRKIIHHRPH-HQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSR-LRL-NPFLDSKNMKPGDRLFDKIDTAIKH   85 (202)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~-~Gi-~vf~D~~~l~~G~~i~~~i~~aI~~   85 (202)
                      -+++++.+.... .+-+.+-|..+ .|||-|+++.    .+.....+|.+ .-. .+|.|.- ...|..+.+.+.+-|.+
T Consensus        60 ~i~~~~a~~a~~~~qna~t~p~~k-kvFvv~ghd~----iArael~allrd~~l~~vi~d~~-~~~g~~ile~lek~i~~  133 (233)
T COG4271          60 CLGVQPANAAAPAPQNAATMPNLK-KVFVVSGHDA----IARAELEALLRDWKLEPVILDGL-FSEGQTILESLEKYIAE  133 (233)
T ss_pred             chhhhhhhhcCcCcccccccCCce-eEEEEeccHH----HHHHHHHHHhhccccceEEecCc-ccccHHHHHHHHHHhhh
Confidence            344555443222 22244446666 9999987532    56555566654 333 4666653 66888999999999999


Q ss_pred             cceEEEEeCCCCc-----C---Chh------hHHHHHHHHHh-c-CceecEEEe---c-CCCCccCC
Q 046164           86 CKLGVAVFSPRYC-----E---SYF------CLHELALIMES-R-KKVIPIFYD---V-KPSQLQVP  132 (202)
Q Consensus        86 S~i~IvV~S~~y~-----~---S~w------c~~EL~~i~~~-~-~~ViPVfy~---v-~p~~vr~~  132 (202)
                      ++.+|++.+|+=.     .   ..|      ...||...+.. + ++|+-+..+   | -|||+...
T Consensus       134 v~FAi~latPDDkgy~~~~~~~k~~praRqNVifELGm~mgrLgRkrv~Il~k~~envelPSDi~Gv  200 (233)
T COG4271         134 VKFAIVLATPDDKGYRAVHSREKAFPRARQNVIFELGMFMGRLGRKRVMILMKRDENVELPSDIAGV  200 (233)
T ss_pred             ceEEEEEecCcccccccccchhhccccccccchhhHhhHHhhcccceEEEEecccccccCccccCce
Confidence            9999999999743     1   224      56688887764 3 455544432   1 36666543

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=80.43  E-value=16  Score=26.54  Aligned_cols=72  Identities=13%  Similarity=0.059  Sum_probs=49.2

Q ss_pred             chhHHHHHHHHHhcCCCeeEecCCC-CCCCCcchHHHH---HhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcCcee
Q 046164           44 KRTIAGLLHDHLSRLRLNPFLDSKN-MKPGDRLFDKID---TAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVI  118 (202)
Q Consensus        44 r~~fv~~L~~~L~~~Gi~vf~D~~~-l~~G~~i~~~i~---~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~Vi  118 (202)
                      +..|. .....|+..|+.|.--... ...|..+..-+.   ..+..|+..+  +=|++-.|.=|.-|...+.+.+..|+
T Consensus        15 ~~~f~-~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~--~l~gWe~S~GA~~E~~~A~~lGl~V~   90 (92)
T PF14359_consen   15 RPAFN-AAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIY--MLPGWENSRGARLEHELAKKLGLPVI   90 (92)
T ss_pred             HHHHH-HHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEE--EcCCcccCcchHHHHHHHHHCCCeEe
Confidence            34454 5778899999776543322 255555554443   4467777543  44999999999999999988876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		2e-12
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		6e-10
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		1e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           DVF++ RG DT+      L+  L R  +  F D K ++ G R   ++ + I+  +  V V
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69
Query: 93  FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRA 148
            S  Y  S +CL EL  IM+  KK    V+PIFY V+P+ ++    G  + +  +  SR 
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW-QTGVLAEQFKKHASRE 128
Query: 149 LEEA--KYTVGLT-FDSINGD 166
             E   K+   LT F  ++GD
Sbjct: 129 DPEKVLKWRQALTNFAQLSGD 149

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           +VF++ RG DT+      L+  L R +++ F D   +  G  +   +  AI   K+ V +
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96
Query: 93  FSPRYCESYFCLHELALIM-----ESRKKVIPIFYDVKPSQLQ 130
            S  Y +S +CL ELA I+     + R+ ++PIFY V PS ++
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 31  PCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
           P D+FI+H   D    +  L H  L       + D  +++PGD L   ID  +   + G+
Sbjct: 20  PHDIFISHAWEDKADFVEALAH-TLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78
Query: 91  AVFSPRYCESYFCLHELALIME----SRKKVIPIFYDVKPSQL 129
            V S  + +  +   EL  + +     R +++PI++ V   ++
Sbjct: 79  VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	8e-31
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-30
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-30
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2js7_A	160	Myeloid differentiation primary response protein M	3e-06
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	5e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	2e-05
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	3e-05

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  109 bits (274), Expect = 8e-31
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           D+FI+H   D K      L   L       + D  +++PGD L   ID  +   + G+ V
Sbjct: 22  DIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80

Query: 93  FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL 129
            S  + +  +   EL  + +        ++PI++ V   ++
Sbjct: 81  LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  110 bits (276), Expect = 1e-30
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           +VF++ RG DT+      L+  L R +++ F D   +  G  +   +  AI   K+ V +
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96

Query: 93  FSPRYCESYFCLHELALIMESRKK-----VIPIFYDVKPSQL--QVPDNG-----TCSRK 140
            S  Y +S +CL ELA I+  +++     ++PIFY V PS +  Q            ++ 
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF 156

Query: 141 ---ELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNL 182
               +Q +  AL++     G      N          +  + +++
Sbjct: 157 DGQTIQNWKDALKKVGDLKGWHI-GKNDKQGAIADKVSADIWSHI 200

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  108 bits (273), Expect = 2e-30
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
           DVF++ RG DT+      L+  L R  +  F D K ++ G R   ++ + I+  +  V V
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query: 93  FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQL--QVPDNG-----TCSRK- 140
            S  Y  S +CL EL  IM+  KK    V+PIFY V+P+ +  Q            SR+ 
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRED 129

Query: 141 --ELQRFSRALEEA 152
             ++ ++ +AL   
Sbjct: 130 PEKVLKWRQALTNF 143

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 33  DVFINHRGTDTK--RTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
           DV + H   D    + +   L    + LR   FL  ++  PG  +  ++  A+      V
Sbjct: 12  DVCVCHSEEDLVAAQDLVSYLEGSTASLRC--FLQLRDATPGGAIVSELCQALSSSHCRV 69

Query: 91  AVFSPRYCESYFCLHELALIM----ESRKKVIPIFYDVKPSQL 129
            + +P + +  +C +++   +     +    IP+   +  +  
Sbjct: 70  LLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 59/203 (29%)

Query: 7   TKSLCRKIIHHRPHHQIQLPITRRPCDVF---INHRGTDTKRTIAGLLHDHLSRLRLNPF 63
            KSL  K +  RP     LP  R         ++         IA  + D L+       
Sbjct: 303 VKSLLLKYLDCRPQ---DLP--REVLTTNPRRLS--------IIAESIRDGLATW----- 344

Query: 64  LDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRK---KVIPI 120
               N K      DK+ T I+     + V  P      F    L++   S      ++ +
Sbjct: 345 ---DNWK--HVNCDKLTTIIESS---LNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSL 394

Query: 121 F-YDVKPSQLQVPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVI 179
             +DV  S + V  N      +L ++S                +     E   +     +
Sbjct: 395 IWFDVIKSDVMVVVN------KLHKYS---------------LVEKQPKESTISIPSIYL 433

Query: 180 NNLIEVEEESTANREPMGFLQNY 202
              +++E E   +R     + +Y
Sbjct: 434 ELKVKLENEYALHRS---IVDHY 453

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 33  DVFINHRGTDTK--RTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLG 89
           D FI +  +D +  + +   L     RL+L   +  +++ PG  ++      I K C+  
Sbjct: 18  DAFICYCPSDIQFVQEMIRQLEQTNYRLKL--CVSDRDVLPGTCVWSIASELIEKRCRRM 75

Query: 90  VAVFSPRYCESYFCLHEL-----ALIMESRKKVIPIFYDVKPSQLQ 130
           V V S  Y +S  C  +            +K++IPI Y     +  
Sbjct: 76  VVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFP 121

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHL--SRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
             FI++   D    +   L  +L      +   L      PG  + + I + I+     +
Sbjct: 37  HAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSI 95

Query: 91  AVFSPRYCESYFCLHEL-----ALIMESRKKVIPIFYDVKP 126
            V SP + ++ +C +E       L  E+   +I I  +  P
Sbjct: 96  FVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 33  DVFINHRGTDT---KRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLG 89
           D F+++   D    +  +   L +     +L   L  ++   G  + D I  +I+     
Sbjct: 7   DAFVSYSERDAYWVENLMVQELENFNPPFKLX--LHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 90  VAVFSPRYCESYFCLHEL-----ALIMESRKKVIPIFYD 123
           V V S  + +S +  +EL      L  E+    I I  +
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHL-----------SRLRLNPFLDSKNMKPGDRLFDKIDT 81
           D ++++   D  +       +                    F+  +++ P     + +  
Sbjct: 4   DAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVAR 63

Query: 82  AIKHCKLGVAVFSPRY-CESYFCLHEL-----ALIMESRKKVIPIFYD 123
            +   K  + V +P Y     + + EL      +++    KVI I   
Sbjct: 64  CVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECS 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.97
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.92
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.89
2js7_A	160	Myeloid differentiation primary response protein M	99.89
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.88
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.48
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.77
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.63
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	93.89
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	92.34
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	89.54
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	83.21

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-49  Score=320.15  Aligned_cols=156  Identities=27%  Similarity=0.460  Sum_probs=128.7

Q ss_pred             CCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHH
Q 046164           27 ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHE  106 (202)
Q Consensus        27 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~E  106 (202)
                      +..++|||||||+|+|+|.+|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++|
T Consensus         4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc----CceecEEEecCCCCccCCCCCc-----------cchhhhHHHHHHHHHHHHhcCCcccCCCCCHHHHH
Q 046164          107 LALIMESR----KKVIPIFYDVKPSQLQVPDNGT-----------CSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFL  171 (202)
Q Consensus       107 L~~i~~~~----~~ViPVfy~v~p~~vr~~~~~~-----------~~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~~i  171 (202)
                      |++|++|.    ++||||||+|+|++||+|+ |.           .+++++++|+.||+++++++|+++.   .+|+++|
T Consensus        84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~-g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~---~~e~~~i  159 (176)
T 3jrn_A           84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQT-GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG---DDDSKLV  159 (176)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSCHHHHHHTC-THHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC---SCHHHHH
T ss_pred             HHHHHhhhccCCCEEEEEEecCCHHHhhhcc-CcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC---CCHHHHH
Confidence            99999874    5899999999999999998 43           3568899999999999999999984   6799999


Q ss_pred             HHHHHHHHHHhhhhc
Q 046164          172 TTATDAVINNLIEVE  186 (202)
Q Consensus       172 ~~Iv~~v~~~L~~~~  186 (202)
                      ++||++|+++|+..+
T Consensus       160 ~~Iv~~v~~~l~~~~  174 (176)
T 3jrn_A          160 DKIANEISNKKTIYA  174 (176)
T ss_dssp             HHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999998654

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.6e-48  Score=321.58  Aligned_cols=157  Identities=24%  Similarity=0.457  Sum_probs=144.7

Q ss_pred             CCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164           26 PITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH  105 (202)
Q Consensus        26 ~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~  105 (202)
                      ..+.++|||||||+|+|+|.+|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-----CceecEEEecCCCCccCCCCCc-----------cchhhhHHHHHHHHHHHHhcCCcccCCCCCHHH
Q 046164          106 ELALIMESR-----KKVIPIFYDVKPSQLQVPDNGT-----------CSRKELQRFSRALEEAKYTVGLTFDSINGDWSE  169 (202)
Q Consensus       106 EL~~i~~~~-----~~ViPVfy~v~p~~vr~~~~~~-----------~~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~  169 (202)
                      ||++|++|.     ++||||||+|+|++||+|+ |.           +.++++++|+.||++|++++||++.+ +.+|++
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~-g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~-~~~e~~  187 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT-GCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK-NDKQGA  187 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC-TTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT-TSCHHH
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc-ccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC-CCCHHH
Confidence            999999873     5899999999999999998 43           35678999999999999999999986 678999


Q ss_pred             HHHHHHHHHHHHhhh
Q 046164          170 FLTTATDAVINNLIE  184 (202)
Q Consensus       170 ~i~~Iv~~v~~~L~~  184 (202)
                      +|++||++|+++|..
T Consensus       188 ~i~~Iv~di~~kl~~  202 (204)
T 3ozi_A          188 IADKVSADIWSHISK  202 (204)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999976

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.97  E-value=3.8e-31  Score=208.96  Aligned_cols=106  Identities=23%  Similarity=0.424  Sum_probs=99.6

Q ss_pred             CCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHH
Q 046164           27 ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHE  106 (202)
Q Consensus        27 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~E  106 (202)
                      .+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.+.|.++|++|+++|+|+|++|+.|.||++|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            3578999999999999 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc----CceecEEEecCCCCccCCC
Q 046164          107 LALIMESR----KKVIPIFYDVKPSQLQVPD  133 (202)
Q Consensus       107 L~~i~~~~----~~ViPVfy~v~p~~vr~~~  133 (202)
                      |..++++.    ++||||||+++|++||+|.
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~  125 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFS  125 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence            99999863    5899999999999999987

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.92  E-value=9.8e-27  Score=182.82  Aligned_cols=101  Identities=18%  Similarity=0.305  Sum_probs=76.3

Q ss_pred             CCCCccEEEeccccccchhHHHHHHHHHhc--CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164           28 TRRPCDVFINHRGTDTKRTIAGLLHDHLSR--LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH  105 (202)
Q Consensus        28 ~~~~ydVFISy~~~D~r~~fv~~L~~~L~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~  105 (202)
                      ..+.|||||||+++|+  .||.+|..+|++  .|+++|+|++++.||+.+.++|.+||++|+++|+|+|++|++|.||+.
T Consensus         7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            3678999999999996  579999999998  599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc----CceecEEEecCCCCcc
Q 046164          106 ELALIMESR----KKVIPIFYDVKPSQLQ  130 (202)
Q Consensus       106 EL~~i~~~~----~~ViPVfy~v~p~~vr  130 (202)
                      |+..|+.+.    .+||||||+++++++.
T Consensus        85 El~~al~~~~~~~~~vIpv~~~v~~~~lp  113 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLLSGLSRAAYP  113 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred             HHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence            999999864    3788999988755543

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.89  E-value=1.1e-24  Score=171.29  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=88.6

Q ss_pred             CCCccEEEeccccccchhHHHH-HHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164           29 RRPCDVFINHRGTDTKRTIAGL-LHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH  105 (202)
Q Consensus        29 ~~~ydVFISy~~~D~r~~fv~~-L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~  105 (202)
                      ++.|||||||+++|.  .||.+ |...|++.  |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+.
T Consensus         3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~   80 (149)
T 1fyx_A            3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY   80 (149)
T ss_dssp             SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence            678999999999996  79996 99999986  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-----hcCceecEEEe-cCCCCc
Q 046164          106 ELALIME-----SRKKVIPIFYD-VKPSQL  129 (202)
Q Consensus       106 EL~~i~~-----~~~~ViPVfy~-v~p~~v  129 (202)
                      |+..|+.     .+.+||||||+ +++..+
T Consensus        81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           81 ELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            9999874     34589999995 444333

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.89  E-value=4.5e-24  Score=169.90  Aligned_cols=96  Identities=23%  Similarity=0.359  Sum_probs=88.1

Q ss_pred             CCCccEEEeccccccchhHHHHHHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhhh-hcceEEEEeCCCCcCChhhHH
Q 046164           29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAIK-HCKLGVAVFSPRYCESYFCLH  105 (202)
Q Consensus        29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~y~~S~wc~~  105 (202)
                      .+.|||||||+++|  ..||.+|...|++.  |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+.
T Consensus        14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            67899999999999  47999999999984  69999999999999999999999999 799999999999999999999


Q ss_pred             HHHHHHHhc-----CceecEEEecCC
Q 046164          106 ELALIMESR-----KKVIPIFYDVKP  126 (202)
Q Consensus       106 EL~~i~~~~-----~~ViPVfy~v~p  126 (202)
                      |+..|+++.     ++||||||+.-+
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEcccc
Confidence            999999763     489999997543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.88  E-value=3.7e-24  Score=173.28  Aligned_cols=96  Identities=18%  Similarity=0.263  Sum_probs=86.3

Q ss_pred             CCCCccEEEeccccccchhHHHH-HHHHHhc--CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhH
Q 046164           28 TRRPCDVFINHRGTDTKRTIAGL-LHDHLSR--LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCL  104 (202)
Q Consensus        28 ~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~  104 (202)
                      .++.|||||||+++|.  .||.. |...|++  .|+++|+|++++.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus        32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            4788999999999995  79975 9999998  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----cCceecEEEecC
Q 046164          105 HELALIMES-----RKKVIPIFYDVK  125 (202)
Q Consensus       105 ~EL~~i~~~-----~~~ViPVfy~v~  125 (202)
                      .|+..|+.+     +++||||||+.-
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~i  135 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEPI  135 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence            999999853     358999999643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=166.29  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=86.5

Q ss_pred             CCccEEEecccccc---------chhHHHHHHH-HHh-cCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCc
Q 046164           30 RPCDVFINHRGTDT---------KRTIAGLLHD-HLS-RLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYC   98 (202)
Q Consensus        30 ~~ydVFISy~~~D~---------r~~fv~~L~~-~L~-~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~   98 (202)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+|++++.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         4689999665 699 799999999999999999999999999999999999999997


Q ss_pred             -CChhhHHHHHHHHHh-----cCceecEEEecCC
Q 046164           99 -ESYFCLHELALIMES-----RKKVIPIFYDVKP  126 (202)
Q Consensus        99 -~S~wc~~EL~~i~~~-----~~~ViPVfy~v~p  126 (202)
                       .|.||..|+..|+.+     +.+||||++...+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             999999999999865     3589999987544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=160.87  Aligned_cols=97  Identities=19%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             CCCccEEEeccccccchhHH-HHHHHHHhc-----CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChh
Q 046164           29 RRPCDVFINHRGTDTKRTIA-GLLHDHLSR-----LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYF  102 (202)
Q Consensus        29 ~~~ydVFISy~~~D~r~~fv-~~L~~~L~~-----~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~w  102 (202)
                      .+.|||||||+++|.  .|| ..|...|+.     .|+++|++++|+.||+.+.+.|.++|++||.+|+|+|++|+.|.|
T Consensus       668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w  745 (844)
T 3j0a_A          668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW  745 (844)
T ss_dssp             CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred             ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence            789999999999985  577 669999985     589999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh-----cCceecEEEecCCC
Q 046164          103 CLHELALIMES-----RKKVIPIFYDVKPS  127 (202)
Q Consensus       103 c~~EL~~i~~~-----~~~ViPVfy~v~p~  127 (202)
                      |..|+..|+.+     +++||||||+..|.
T Consensus       746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          746 CLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999743     46899999975553

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.48  E-value=1.3e-07  Score=70.59  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=57.7

Q ss_pred             CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHH
Q 046164           30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELAL  109 (202)
Q Consensus        30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~  109 (202)
                      .+|.+||||+..|.    ...|...|.+.|+... |               +.|+.|+++||+.++....|+||..|+..
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            47999999998872    3344455545566433 2               56899999999999999999999999999


Q ss_pred             HHHhcCceecEE
Q 046164          110 IMESRKKVIPIF  121 (202)
Q Consensus       110 i~~~~~~ViPVf  121 (202)
                      +.+.+++|+-|.
T Consensus        63 A~~~gkpIigV~   74 (111)
T 1eiw_A           63 ARKSSKPIITVR   74 (111)
T ss_dssp             HTTTTCCEEEEC
T ss_pred             HHHcCCCEEEEE
Confidence            999999988874

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.77  E-value=0.00014  Score=58.47  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             ccEEEec--------------cccccchhHHHHHHHHHhcCCCeeEecCCCCC-------C-CCcchHHHHHhhhhcceE
Q 046164           32 CDVFINH--------------RGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMK-------P-GDRLFDKIDTAIKHCKLG   89 (202)
Q Consensus        32 ydVFISy--------------~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~-------~-G~~i~~~i~~aI~~S~i~   89 (202)
                      --+|++|              +.+|.  .+...|..--.+..+-.|.|.+++.       . -..|...|.+.|..|+.+
T Consensus         6 n~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v   83 (189)
T 3hyn_A            6 NANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI   83 (189)
T ss_dssp             CEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred             cCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence            3478888              34443  4566677666666665677876542       2 345788899999999999


Q ss_pred             EEEeCCCCcCChhhHHHHHHHH-HhcCceecEEEecC-CCCccCCCCCccchhhhHHHHHHHH
Q 046164           90 VAVFSPRYCESYFCLHELALIM-ESRKKVIPIFYDVK-PSQLQVPDNGTCSRKELQRFSRALE  150 (202)
Q Consensus        90 IvV~S~~y~~S~wc~~EL~~i~-~~~~~ViPVfy~v~-p~~vr~~~~~~~~~e~~~~W~~AL~  150 (202)
                      |+++|++...|.|...|+..++ +++.+||-|..+-. .+++.. .+|.+..+.-..|.+++.
T Consensus        84 IllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~~~~~i~~-~~g~~~~~~~~~wpk~p~  145 (189)
T 3hyn_A           84 ILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVD-SNGNFKKQIKDLWDKLPA  145 (189)
T ss_dssp             EEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCCSGGGTBC-TTSCBCHHHHHHHHTCHH
T ss_pred             EEEEecCccccchhHHHHHHHHHhcCCcEEEEECCccccchhhh-ccccchhhHhhcCCcchh
Confidence            9999999999999999999999 89999999876532 234443 224444445557886443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.63  E-value=0.23  Score=38.65  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHhcCCCeeEecCCCCC-CCCcchHHHHHhhhhcceEEEEeCC--CCcCChhhHHHHHHHHHhcCceecE
Q 046164           45 RTIAGLLHDHLSRLRLNPFLDSKNMK-PGDRLFDKIDTAIKHCKLGVAVFSP--RYCESYFCLHELALIMESRKKVIPI  120 (202)
Q Consensus        45 ~~fv~~L~~~L~~~Gi~vf~D~~~l~-~G~~i~~~i~~aI~~S~i~IvV~S~--~y~~S~wc~~EL~~i~~~~~~ViPV  120 (202)
                      ..+...+...|++.|+.+|...++-. ....+...-.++|++|+++|++++|  .-..++=+..|+..+...+++|+-+
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l  104 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF  104 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence            36888999999999999988543211 1122333336889999999999996  2223444888999999999988765

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=93.89  E-value=0.55  Score=36.39  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             cCCCCCCCCccEEEecc--ccccchhHHHHHHHHHhcCCCeeEecCCC----CCCCCc-------chHHHHHhhhhcceE
Q 046164           23 IQLPITRRPCDVFINHR--GTDTKRTIAGLLHDHLSRLRLNPFLDSKN----MKPGDR-------LFDKIDTAIKHCKLG   89 (202)
Q Consensus        23 ~~~~~~~~~ydVFISy~--~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~----l~~G~~-------i~~~i~~aI~~S~i~   89 (202)
                      |++++..++..|||+=.  +..........+.+.|++.| .|+.+..-    -..|..       +...-.+.|++|+++
T Consensus         3 ~~~~~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~v   81 (165)
T 2khz_A            3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVV   81 (165)
T ss_dssp             CCCCSSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEE
T ss_pred             cccCCCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEE
Confidence            45555667778999832  11111224578999999999 88654321    012211       122224789999999


Q ss_pred             EEEeCCCCcCChhhHHHHHHHHHhcCceecE
Q 046164           90 VAVFSPRYCESYFCLHELALIMESRKKVIPI  120 (202)
Q Consensus        90 IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPV  120 (202)
                      |++++   ..+.=+..|+..+...+++|+-+
T Consensus        82 va~~~---~~d~Gt~~EiGyA~algKPVi~l  109 (165)
T 2khz_A           82 VAEVT---QPSLGVGYELGRAVALGKPILCL  109 (165)
T ss_dssp             EEECS---SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred             EEECC---CCCCCHHHHHHHHHHCCCEEEEE
Confidence            99997   44666889999999999998765

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=92.34  E-value=0.49  Score=36.64  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             cEEEe--ccccccchhHHHHHHHHHhcCCCeeEecC---CCC-CCCC-------cchHHHHHhhhhcceEEEEeCCCCcC
Q 046164           33 DVFIN--HRGTDTKRTIAGLLHDHLSRLRLNPFLDS---KNM-KPGD-------RLFDKIDTAIKHCKLGVAVFSPRYCE   99 (202)
Q Consensus        33 dVFIS--y~~~D~r~~fv~~L~~~L~~~Gi~vf~D~---~~l-~~G~-------~i~~~i~~aI~~S~i~IvV~S~~y~~   99 (202)
                      .||++  +++.+....+...+.+.|++.| .|+...   .++ ..|.       .+...-.++|++|+++|++++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            35665  3332333467789999999999 675322   111 1121       134444578999999999998   44


Q ss_pred             ChhhHHHHHHHHHhcCceecEEE
Q 046164          100 SYFCLHELALIMESRKKVIPIFY  122 (202)
Q Consensus       100 S~wc~~EL~~i~~~~~~ViPVfy  122 (202)
                      |.=...|+..+...+++|+-++-
T Consensus        80 d~Gt~~EiG~A~algkPV~~l~~  102 (152)
T 4fyk_A           80 SLGVGYELGRAVALGKPILCLFR  102 (152)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCHHHHHHHHHHcCCeEEEEEe
Confidence            66678899999999998876653

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=89.54  E-value=1.4  Score=34.25  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHHhcC--CCeeEecCCCC----CCCCcchHHH----HHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhc
Q 046164           45 RTIAGLLHDHLSRL--RLNPFLDSKNM----KPGDRLFDKI----DTAIKHCKLGVAVFSPRYCESYFCLHELALIMESR  114 (202)
Q Consensus        45 ~~fv~~L~~~L~~~--Gi~vf~D~~~l----~~G~~i~~~i----~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~  114 (202)
                      ..+...+.++|++.  |+.+|.--++-    .++..+...+    .++|++|+++|.++.. ...+..+..|+..+...+
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCC
Confidence            35778899999865  89888754322    1233344444    4679999999999953 345678899999999999


Q ss_pred             CceecEE
Q 046164          115 KKVIPIF  121 (202)
Q Consensus       115 ~~ViPVf  121 (202)
                      ++|+.+.
T Consensus        98 kPVi~~~  104 (162)
T 3ehd_A           98 IPVVALY  104 (162)
T ss_dssp             CCEEEEC
T ss_pred             CEEEEEE
Confidence            9887764

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=83.21  E-value=3.4  Score=32.12  Aligned_cols=86  Identities=15%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             cEEEe---ccccccchhHHHHHHHHHhcC--CCeeEecCCC-C--------CCC--------CcchHHHHHhhhhcceEE
Q 046164           33 DVFIN---HRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKN-M--------KPG--------DRLFDKIDTAIKHCKLGV   90 (202)
Q Consensus        33 dVFIS---y~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~-l--------~~G--------~~i~~~i~~aI~~S~i~I   90 (202)
                      .||+.   |+. + ...+...+.+.|++.  |+.+|.-.++ .        ..+        ..+...=.++|++|+++|
T Consensus         9 kIYLAGP~F~~-~-~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV   86 (167)
T 1s2d_A            9 KIYLGSPFYSD-A-QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             EEEEECCCSSH-H-HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             EEEEECCCCCH-H-HHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence            46665   332 2 245788999999999  8888865432 1        111        112333346799999999


Q ss_pred             EEeCCCCcCChhhHHHHHHHHHhcCceecEE
Q 046164           91 AVFSPRYCESYFCLHELALIMESRKKVIPIF  121 (202)
Q Consensus        91 vV~S~~y~~S~wc~~EL~~i~~~~~~ViPVf  121 (202)
                      .++...-. ++=+..|+..+...+++|+-+.
T Consensus        87 A~ldg~~~-D~GTa~EiGyA~algKPVv~l~  116 (167)
T 1s2d_A           87 FLYDMDQL-DDGSAFXIGFMRAMHKPVILVP  116 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EECCCCCC-CCCceeehhhHhhCCCeEEEEE
Confidence            99987544 4457889999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-11
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-08

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 2e-11
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
             FI++ G D+   +   L  +L +  +   L  +N  PG  + + I T I+     + V
Sbjct: 14  HAFISYSGHDS-FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFV 72

Query: 93  FSPRYCESYFCLHELALIM-----ESRKKVIPIFYDVKPS 127
            SP + +S +C +EL         E    +I I  +  P 
Sbjct: 73  LSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQ 112

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 33  DVFINHRGTDTKRTIAGLLHDHL--SRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
           D F+++   D    +  L+   L          L  ++   G  + D I  +I+     V
Sbjct: 7   DAFVSYSERDA-YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTV 65

Query: 91  AVFSPRYCESYFCLHELALIM-----ESRKKVIPIFYDVKPS 127
            V S  + +S +C +EL         E+    I I  +    
Sbjct: 66  FVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEK 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.86
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.83
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	95.05
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	90.41
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	90.2
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	88.09
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	84.47
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	81.05

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-22  Score=159.68  Aligned_cols=96  Identities=23%  Similarity=0.367  Sum_probs=87.3

Q ss_pred             CCCCccEEEeccccccchhHH-HHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHH
Q 046164           28 TRRPCDVFINHRGTDTKRTIA-GLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHE  106 (202)
Q Consensus        28 ~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~E  106 (202)
                      .+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|..|.||..|
T Consensus         9 ~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E   86 (161)
T d1fyva_           9 RNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYE   86 (161)
T ss_dssp             SCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHH
T ss_pred             CCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHH
Confidence            4889999999999884  566 5699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-----cCceecEEEecC
Q 046164          107 LALIMES-----RKKVIPIFYDVK  125 (202)
Q Consensus       107 L~~i~~~-----~~~ViPVfy~v~  125 (202)
                      +..++..     ++++|||+++.-
T Consensus        87 ~~~a~~~~~~~~~~~lIpV~l~~~  110 (161)
T d1fyva_          87 LYFAHHNLFHEGSNSLILILLEPI  110 (161)
T ss_dssp             HHTTSCCCSCSSCSSEEEEESSCC
T ss_pred             HHHHHHHHHHcCCCceeEEEEecC
Confidence            9999743     358999999643

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.8e-22  Score=154.58  Aligned_cols=98  Identities=19%  Similarity=0.260  Sum_probs=85.9

Q ss_pred             CCCCCccEEEeccccccchhHH-HHHHHHHhc--CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhh
Q 046164           27 ITRRPCDVFINHRGTDTKRTIA-GLLHDHLSR--LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFC  103 (202)
Q Consensus        27 ~~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc  103 (202)
                      |.++.|||||||+++|.  .|| ..|...|++  .|+++|+|++++.+|+.+.+.|.++|++|+.+|+|+||+|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            35789999999999983  566 468999976  4999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-----hcCceecEEEecCC
Q 046164          104 LHELALIME-----SRKKVIPIFYDVKP  126 (202)
Q Consensus       104 ~~EL~~i~~-----~~~~ViPVfy~v~p  126 (202)
                      ..|+..++.     .+++||||+++..|
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            999987753     35699999997433

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.05  E-value=0.059  Score=39.89  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             ccchhHHHHHHHHHhcCCCeeEecCCC-CCCCCcchHHHHHhhhhcceEEEEeCCC--CcCChhhHHHHHHHHHhcCcee
Q 046164           42 DTKRTIAGLLHDHLSRLRLNPFLDSKN-MKPGDRLFDKIDTAIKHCKLGVAVFSPR--YCESYFCLHELALIMESRKKVI  118 (202)
Q Consensus        42 D~r~~fv~~L~~~L~~~Gi~vf~D~~~-l~~G~~i~~~i~~aI~~S~i~IvV~S~~--y~~S~wc~~EL~~i~~~~~~Vi  118 (202)
                      |....+...+...|++.|+.++.-.++ ......|...-.++|++|+++|++++|-  -..++=+..|+..+...+++|+
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algKPVi   94 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVL   94 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCCeEE
Confidence            344567889999999999999874332 2222335555567899999999999852  2234558889999999999886


Q ss_pred             cE
Q 046164          119 PI  120 (202)
Q Consensus       119 PV  120 (202)
                      -.
T Consensus        95 ~~   96 (152)
T d2f62a1          95 TF   96 (152)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.41  E-value=0.54  Score=31.22  Aligned_cols=61  Identities=15%  Similarity=0.088  Sum_probs=44.1

Q ss_pred             CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCC
Q 046164           30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSP   95 (202)
Q Consensus        30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~   95 (202)
                      ...+|||..-+... ..++..|...|++.||+|.+|..    +..+...+..|-..---.++++.+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            35789999888765 47899999999999999999864    345667777665444434444443

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.20  E-value=0.7  Score=33.93  Aligned_cols=93  Identities=15%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CCccEEEeccc-cccchhHHHHHHHHHhcCC--CeeEecCCC-C--------CCCC--------cchHHHHHhhhhcceE
Q 046164           30 RPCDVFINHRG-TDTKRTIAGLLHDHLSRLR--LNPFLDSKN-M--------KPGD--------RLFDKIDTAIKHCKLG   89 (202)
Q Consensus        30 ~~ydVFISy~~-~D~r~~fv~~L~~~L~~~G--i~vf~D~~~-l--------~~G~--------~i~~~i~~aI~~S~i~   89 (202)
                      .+..|||.=.= .+....+...+.+.|++.|  +.+|.-.++ .        +-+.        .+...=.++|++|+++
T Consensus         6 ~~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~v   85 (167)
T d1s2da_           6 PTGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCG   85 (167)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEE
T ss_pred             CCceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEE
Confidence            45667776210 1223467889999999988  466642211 0        0010        1222334689999999


Q ss_pred             EEEeCCCCcCChhhHHHHHHHHHhcCceecEEEe
Q 046164           90 VAVFSPRYCESYFCLHELALIMESRKKVIPIFYD  123 (202)
Q Consensus        90 IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~  123 (202)
                      |+++......+ =...|+..+...+++|+.+.-+
T Consensus        86 IA~ldg~~~D~-GTa~EiG~A~a~gKPvi~~~~d  118 (167)
T d1s2da_          86 VFLYDMDQLDD-GSAFEIGFMRAMHKPVILVPFT  118 (167)
T ss_dssp             EEEEESSSCCH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEeCCCCCCc-cHHHHHHHHHHCCCeEEEEecC
Confidence            99998776543 4677999999999999876543

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=88.09  E-value=0.58  Score=34.19  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             CccEEEe---ccccccchhHHHHHHHHHhcC----CCeeEecCCC----CCCCC--------c----chHHHHHhhhhcc
Q 046164           31 PCDVFIN---HRGTDTKRTIAGLLHDHLSRL----RLNPFLDSKN----MKPGD--------R----LFDKIDTAIKHCK   87 (202)
Q Consensus        31 ~ydVFIS---y~~~D~r~~fv~~L~~~L~~~----Gi~vf~D~~~----l~~G~--------~----i~~~i~~aI~~S~   87 (202)
                      +..|||.   |..  ....+...+.+.|++.    |..+|.-.++    ...+.        .    +...=.++|++|+
T Consensus         2 ~k~IYlAgP~F~~--~q~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           2 KKTIYFGAGWFTD--RQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             CBCEEEECCCSSH--HHHHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEECCCCCH--HHHHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            3456665   332  2346788999999874    6667653221    11111        1    2333357899999


Q ss_pred             eEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEe
Q 046164           88 LGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYD  123 (202)
Q Consensus        88 i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~  123 (202)
                      ++|+++...... .=+..|+..+...+++|+-+.-+
T Consensus        80 ~via~ldg~~~D-~Gta~EiG~A~a~gKpvi~~~~~  114 (156)
T d1f8ya_          80 IMLGVYIPDEED-VGLGMELGYALSQGKYVLLVIPD  114 (156)
T ss_dssp             EEEEECCGGGCC-HHHHHHHHHHHHTTCEEEEEECG
T ss_pred             EEEEEeCCCCCC-CCHHHHHHHHHHcCCcEEEEecC
Confidence            999999865443 34778999999999988876544

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.47  E-value=0.29  Score=34.18  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=33.6

Q ss_pred             hhcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecE
Q 046164           84 KHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPI  120 (202)
Q Consensus        84 ~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPV  120 (202)
                      ++++++|++.......|+|...|+..+.+.+++|+-|
T Consensus        37 ~~~~vvIVL~G~yt~~r~WI~~EI~~A~~~~KpIIgV   73 (111)
T d1eiwa_          37 EDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITV   73 (111)
T ss_dssp             SSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEE
T ss_pred             cCCCEEEEEeeccccCCHHHHHHHHHHHHcCCCeEEE
Confidence            6888888888888889999999999999999999887

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.05  E-value=2  Score=27.93  Aligned_cols=61  Identities=18%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCC
Q 046164           30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSP   95 (202)
Q Consensus        30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~   95 (202)
                      ...||||.--+.+. ...+..|...|++.|++|-+|..    +..+...+..|-..---.++|+.+
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            45799997655543 47888999999999999998863    345667777775544445555543