Citrus Sinensis ID: 046182

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90

MGFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYEPDTCSEDDDERGEPHHNWVDEVVRCEGRGAAAGSDTGPSSMMIRPRPEKKDPSALTREEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITALLEKLRRDKNGVKMDKSRYNVHDEIRGRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTPSPTSHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALGSGTRQKLSNWLIHENHYTRATNNFSPASPADSYSALEKIISSDEPGQGSVMPQNACTAMKLPPASPFDNFLKAAGC

cccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccc

ccEEEHcHcccccccEEEcccccHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHccccccccHHHEEEccccccccccccccccccccccccccccccccHcHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHEHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHcccccccHHHHcccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccEEEEcccEEEEEccccccccccHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccc

mgfisrkifpacgsmcvccpalrsrsrqpVKRYKKLLAEIFpksiadstytHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSAtldnyepdtcsedddergephhnwVDEVVRCegrgaaagsdtgpssmmirprpekkdpsaltreevetpKVWARICIQRMVDLAKETTTMrrvldpmftyfdsrrqwiprqgLAMIVLSDMAYLMETSGNQQLILASVIHhldhknvshdpqlKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLeklpssgviaRATLGSLIILAHMISVASissrsqqvfPEALLVQILKAMlhpnvetrvgaHQIFSVllipspinqhhevasvrsgylhepqqwhsnaasTTSITALLEKLRRdkngvkmdksrynvhdeirgrdsveddwkqghapktssnfYKLSSIIErtagptnlvdvepcvmkfTEDQIVQLLSSFWIqatlpdnlpsnFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLflrnlsldpnngmlpsvCQRSILVMSTGMLMFAAKVYnipglndllktlipndldpymgigddlqiyvrpqadvkeygsftdnqqATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQlqepftpddaimfgpqsilaldhsqmishskeslsfdediatnslveddatseASVANLsrfiprmptpsptshiVSIGQLMESALKVAGQVAgstistsplpyntlaghcealgsgtrqKLSNWLIHEnhytratnnfspaspadsySALEKIissdepgqgsvmpqnactamklppaspfdnflkaagc

mgfisrkifpacgsMCVCCpalrsrsrqpvKRYKKLLAEifpksiadstytHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYEPDTCSEDDDERGEPHHNWVDEVVRCEGRgaaagsdtgpssmmirprpekkdpsaltreevetpkvwarICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQAtvesvgeqesnlNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITALLEKlrrdkngvkmdksrynvhdeirgrdsveddwkqghapktssnfykLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIYVRPQADVKEygsftdnqqaTSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTPSPTSHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALGSGTRQKLSNWLIHENHYTratnnfspasPADSYSALEKIISSDEPGQGSVMPQNACTAMKLPPASPFDNFLKAAGC

**FISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNY******************WVDEVVRC*************************************PKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHE***W************L*********************************************FYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSILAL*****************************************************IVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALGSGTRQKLSNWLIHENHYTR*********************************************************

*GFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYE*****************WVDEVVRCEGRGAAAGSDTG**************************KVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR*GMVLVEIGSVSDLCRHLRKS****************ILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLI************************************************************************************************************FTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSL***********QRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIY****************QQATSLIYELRNKVYESDKIILDIIVQNLSTIIE****DLAKQLQEPFTPDDAIMFGPQSIL********************IATNSLVEDDAT***********************IVSIGQLMESALKV************PLPYNTLAGHCEALGSGTRQKLS**************************************************MKLPPASPFDNFLKAAGC

MGFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYEP************PHHNWVDEVVRCEGRG**********SMMIRP***************ETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITALLEKLRRDKNGVKMDKSRYNVHDEIRGRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTPSPTSHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALGSGTRQKLSNWLIHENHYTRATNNFSPASPADSYSALEKIISSDEPGQGSVMPQNACTAMKLPPASPFDNFLKAAGC

*GFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRSLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYEPD***********PHHNWVDEVVRCEGRGAAAGSDTGPSSMMIR********SALT*EEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSP**********************************LEKLRRD*********************************************************VEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSILALDH************FDEDIATNSLVED**********************PTSHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALGSGTRQKLSNWLIHEN******************************************AMKLPPASPFDNFLKAAGC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		898	2.2.26 [Sep-21-2011]
Q620W3		859	Protein EFR3 homolog OS=C	N/A	no	0.269	0.281	0.208	7e-05

>sp\|Q620W3\|EFR3_CAEBR Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3 SV=1	Back alignment and function desciption

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 122/268 (45%), Gaps = 26/268 (9%)

Query: 175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET 234
           TPKV +  C++ ++  A    ++R V++P+  + D  ++W P    A+ V   + Y ++ 
Sbjct: 241 TPKVLSDRCLRELMGKAS-FGSLRAVIEPVLKHMDLHKRWSPPPSFAIHVFRAIIYSIQ- 298

Query: 235 SGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHL 294
           S N   ++  +I+HLD    S D   +  +  V +++     + +  + +   + L +HL
Sbjct: 299 SQNSYFVIQELINHLDSM-CSADASTRIGIATVLSSIVSIAGTSIGPLLLSIFNSLLKHL 357

Query: 295 RKSFQATVESVGE-QESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPS--- 350
           R S     E  G+  +     + + ++ + + + A  + D + + +MM  T+  +P+   
Sbjct: 358 RTS--VDFERSGKCSDQPAEKMYQEALINAMGDFANALPDYQKV-EMMMFTVGNIPNLDE 414

Query: 351 ------SGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVG 404
                    +    + +L+ +A     A +++    VF ++ L  +L+  L  + + R+ 
Sbjct: 415 RKSKQGEEFLQHVLVKTLLKVATKYRTAYLAT----VFTDSFLDTLLRLALVRDPQVRLA 470

Query: 405 AHQIFSVLLIPSPINQHHEVAS-VRSGY 431
             QIF  LL     ++H   A+ V  GY
Sbjct: 471 TQQIFHTLL-----DRHDNAANLVHLGY 493

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		898
225450585		1002	PREDICTED: uncharacterized protein LOC10	0.948	0.850	0.685	0.0
224122924		1012	predicted protein [Populus trichocarpa]	0.945	0.838	0.679	0.0
147858055		1471	hypothetical protein VITISV_012725 [Viti	0.891	0.544	0.674	0.0
449454006		995	PREDICTED: uncharacterized protein LOC10	0.944	0.852	0.617	0.0
449517786		995	PREDICTED: uncharacterized LOC101202927	0.944	0.852	0.617	0.0
255542898		972	conserved hypothetical protein [Ricinus	0.870	0.804	0.608	0.0
356574083		995	PREDICTED: uncharacterized protein LOC10	0.933	0.842	0.606	0.0
356535012		997	PREDICTED: uncharacterized protein LOC10	0.935	0.842	0.594	0.0
227206460		896	AT5G26850 [Arabidopsis thaliana]	0.925	0.927	0.585	0.0
186525988		983	uncharacterized protein [Arabidopsis tha	0.925	0.845	0.585	0.0

>gi\|225450585\|ref\|XP_002282109.1\| PREDICTED: uncharacterized protein LOC100264846 [Vitis vinifera] gi\|296089778\|emb\|CBI39597.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/856 (68%), Positives = 704/856 (82%), Gaps = 4/856 (0%)

Query: 46   ADSTYTHNIEKFVKKVCKLACENGVEHRRS-LRASSLQCLSAMVWFMAEFSCIFADFDEI 104
            ADSTYTHNIE FV+KVC LA E G E + S L+ASSLQCLSAMVWFMAEFS IF+DFDEI
Sbjct: 148  ADSTYTHNIENFVRKVCMLAREAGDEQQTSTLKASSLQCLSAMVWFMAEFSLIFSDFDEI 207

Query: 105  VSATLDNYEPDTCSEDDDERGEPHHNWVDEVVRCEGRGAAA-GSDTGPSSMMIRPRPEKK 163
            V  TLDNYE DT + +DDERGEPHHNWVDEVVRCEGRG A  GS+  PS  +IRP+ EKK
Sbjct: 208  VHVTLDNYERDTHNGEDDERGEPHHNWVDEVVRCEGRGGAGVGSEISPSCPVIRPQTEKK 267

Query: 164  DPSALTREEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMI 223
            DPS LTREE+ETPKVWA+ICIQRMV+LAKE+TTMRRVLDPMF YFD+ R W+PRQGLA++
Sbjct: 268  DPSLLTREEIETPKVWAQICIQRMVELAKESTTMRRVLDPMFVYFDTGRHWVPRQGLALV 327

Query: 224  VLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVE 283
            VLSDM+Y +E+ G+Q++ILA+VI HLDHKNV+HDPQ KSYVIQVATAL  Q+RSG +L E
Sbjct: 328  VLSDMSYFVESMGDQKMILAAVIRHLDHKNVAHDPQTKSYVIQVATALVHQVRSGAILAE 387

Query: 284  IGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAM 343
            IG VSDLCRHLRKS QATVES G+QES+LNI L+NSIEDCLLEIA+GIGD RPLFDMMA+
Sbjct: 388  IGFVSDLCRHLRKSLQATVESAGQQESDLNISLQNSIEDCLLEIARGIGDARPLFDMMAI 447

Query: 344  TLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRV 403
            TLE LP  GV+ARAT+GSL+ LA+MIS+AS+SS SQQVFPE+LLVQ+LK MLHP+VE R+
Sbjct: 448  TLESLPCGGVVARATIGSLLTLAYMISLASVSSCSQQVFPESLLVQLLKVMLHPDVEARL 507

Query: 404  GAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAAST-TSITALLEKLRRDKNGV 462
            GAHQIFSVLLIPS  +    VAS+RSGYL+E ++WHSN AS   SITA LEKLR++K+G 
Sbjct: 508  GAHQIFSVLLIPSSNHPRQTVASLRSGYLYEQRRWHSNTASACASITARLEKLRKEKDGT 567

Query: 463  KMDKSRYNVHDEIRGRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMK 522
            K++    NV D+++ ++  E+DWK G A K S NFY LSSII+RTAG T+L + EP ++K
Sbjct: 568  KIEHGN-NVQDDLKEKEIAEEDWKHGRARKNSPNFYNLSSIIDRTAGSTSLTESEPYILK 626

Query: 523  FTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMARFFQLPLF 582
             +EDQI QLLS+FWIQA LPDNLPSN EAIAHSF+LTLIS RLKNPND L+ RFFQLPL 
Sbjct: 627  VSEDQIAQLLSAFWIQANLPDNLPSNIEAIAHSFSLTLISSRLKNPNDNLVVRFFQLPLS 686

Query: 583  LRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLDPYMGIG 642
            LRN+SLDP+NG L   CQRSILV+STGMLMF AK+Y IP LNDL+KTL+P D+DP++ I 
Sbjct: 687  LRNISLDPSNGTLSPACQRSILVLSTGMLMFVAKIYQIPDLNDLMKTLVPYDVDPFVAIN 746

Query: 643  DDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLSTIIEVEAD 702
            DDLQ+ V+PQA+V++YGS TDNQ A SL+ ELRNK+YESDK+I+DI++Q+LS+I E++AD
Sbjct: 747  DDLQVCVKPQANVRDYGSVTDNQVAMSLLLELRNKIYESDKVIMDILIQSLSSITELDAD 806

Query: 703  DLAKQLQEPFTPDDAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEAS 762
            +LAKQL E FTPDDA++FGPQSI  L+H Q +S  KESLSFD D   NSLVE+D  SE+S
Sbjct: 807  ELAKQLSETFTPDDALLFGPQSIFGLEHIQTVSLPKESLSFDGDFPPNSLVEEDLISESS 866

Query: 763  VANLSRFIPRMPTPSPTSHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTLAGHCEALG 822
            V +LSRFIP+MP     SH++SIGQL+ESAL+VAGQVAG+++STSPLPY+ +A  CEALG
Sbjct: 867  VVDLSRFIPKMPASPSLSHVISIGQLLESALEVAGQVAGTSVSTSPLPYSAMASQCEALG 926

Query: 823  SGTRQKLSNWLIHENHYTRATNNFSPASPADSYSALEKIISSDEPGQGSVMPQNACTAMK 882
            SGTR+KLS+WL HEN YT   +   P  PAD  SA+  I S      G  +  +   AM+
Sbjct: 927  SGTRRKLSSWLTHENGYTIGPDKPFPTFPADGCSAITNITSDGRSVPGGKLSLDPWLAMR 986

Query: 883  LPPASPFDNFLKAAGC 898
            LPPASPFDNFL+AAGC
Sbjct: 987  LPPASPFDNFLRAAGC 1002

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224122924\|ref\|XP_002318950.1\| predicted protein [Populus trichocarpa] gi\|222857326\|gb\|EEE94873.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147858055\|emb\|CAN82509.1\| hypothetical protein VITISV_012725 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454006\|ref\|XP_004144747.1\| PREDICTED: uncharacterized protein LOC101202927 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449517786\|ref\|XP_004165925.1\| PREDICTED: uncharacterized LOC101202927 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255542898\|ref\|XP_002512512.1\| conserved hypothetical protein [Ricinus communis] gi\|223548473\|gb\|EEF49964.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356574083\|ref\|XP_003555181.1\| PREDICTED: uncharacterized protein LOC100788290 [Glycine max]	Back alignment and taxonomy information

>gi\|356535012\|ref\|XP_003536043.1\| PREDICTED: uncharacterized protein LOC100785587 [Glycine max]	Back alignment and taxonomy information

>gi\|227206460\|dbj\|BAH57285.1\| AT5G26850 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|186525988|ref|NP_198037.3| uncharacterized protein [Arabidopsis thaliana] gi|186525992|ref|NP_001031947.2| uncharacterized protein [Arabidopsis thaliana] gi|186525996|ref|NP_001031948.2| uncharacterized protein [Arabidopsis thaliana] gi|334187962|ref|NP_001190405.1| uncharacterized protein [Arabidopsis thaliana] gi|332006230|gb|AED93613.1| uncharacterized protein [Arabidopsis thaliana] gi|332006231|gb|AED93614.1| uncharacterized protein [Arabidopsis thaliana] gi|332006232|gb|AED93615.1| uncharacterized protein [Arabidopsis thaliana] gi|332006233|gb|AED93616.1| uncharacterized protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		898
TAIR\|locus:2148443		983	AT5G26850 "AT5G26850" [Arabido	0.863	0.788	0.595	5e-267
TAIR\|locus:2054416		1025	AT2G41830 [Arabidopsis thalian	0.868	0.760	0.312	2.5e-124
TAIR\|locus:2178953		1025	AT5G21080 "AT5G21080" [Arabido	0.655	0.574	0.343	4.6e-101
TAIR\|locus:2198846		1003	AT1G05960 "AT1G05960" [Arabido	0.760	0.680	0.280	5.3e-65
UNIPROTKB\|Q14156		821	EFR3A "Protein EFR3 homolog A"	0.308	0.337	0.217	7.2e-08
UNIPROTKB\|E2RCW6		821	EFR3A "Uncharacterized protein	0.308	0.337	0.214	1.2e-07
RGD\|1305976		819	Efr3a "EFR3 homolog A (S. cere	0.306	0.335	0.205	1.5e-07
MGI\|MGI:1923990		819	Efr3a "EFR3 homolog A (S. cere	0.306	0.335	0.205	1.2e-06
UNIPROTKB\|E1BRM7		823	EFR3A "Uncharacterized protein	0.326	0.356	0.214	1.3e-06
WB\|WBGene00016311		859	C32D5.3 [Caenorhabditis elegan	0.276	0.288	0.207	2.9e-06

TAIR\|locus:2148443 AT5G26850 "AT5G26850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2365 (837.6 bits), Expect = 5.0e-267, Sum P(2) = 5.0e-267
 Identities = 478/803 (59%), Positives = 616/803 (76%)

Query:    41 FPKSIADSTYTHNIEKFVKKVCKLACENGVEHRRS-LRASSLQCLSAMVWFMAEFSCIFA 99
             F  S  D TYTH+IEKF  KVC LA E G EH++  LRAS LQCLSAMVW+M EFS IFA
Sbjct:   143 FIYSQVDGTYTHSIEKFALKVCSLAREEGEEHQKQCLRASGLQCLSAMVWYMGEFSHIFA 202

Query:   100 DFDEIVSATLDNYEPDTCSEDDDERGEPHHNWVDEVVRCEGRGAAAGSDTGPSSMMIRPR 159
               DEIV A LDNYE D   + +++R E + NWV+EV+RCEGRG    +   PS M++RPR
Sbjct:   203 TVDEIVHAILDNYEADMIVQTNEDREEQNCNWVNEVIRCEGRGTTICNS--PSYMIVRPR 260

Query:   160 PEKKDPSALTREEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQG 219
               +KDP+ LT+EE E PKVWA+IC+QRMVDLAKE+TT+R++LDPMF+YF+SRRQW P  G
Sbjct:   261 TARKDPTLLTKEETEMPKVWAQICLQRMVDLAKESTTLRQILDPMFSYFNSRRQWTPPNG 320

Query:   220 LAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGM 279
             LAMIVLSD  YLMETSG+QQL+L++V+ HLD+K+V++DP+LK+Y+IQVA  LA+ IR+  
Sbjct:   321 LAMIVLSDAVYLMETSGSQQLVLSTVVRHLDNKHVANDPELKAYIIQVAGCLAKLIRTSS 380

Query:   280 VLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFD 339
              L +I  V+DLCRHLRKSFQAT  S+G++E NLN++++NSIEDCL EIAKGI +T+PLFD
Sbjct:   381 YLRDISFVNDLCRHLRKSFQATARSIGDEELNLNVMIQNSIEDCLREIAKGIVNTQPLFD 440

Query:   340 MMAMTLEKLPSSGVIARATLGSLIILAHMISVA-SISSRSQQVFPEALLVQILKAMLHPN 398
             MMA+++E LPSSG+++RA +GSL+ILAH +S A S S RSQQVFP+ LL  +LKAMLHPN
Sbjct:   441 MMAVSVEGLPSSGIVSRAAVGSLLILAHAMSSALSPSMRSQQVFPDTLLDALLKAMLHPN 500

Query:   399 VETRVGAHQIFSVLLIPSPINQHHEVASVR-SGYLHEPQQWHSNAAST-TSITALLEKLR 456
             VETRVGAH+IFSV+L+ S       +ASVR SGYL+E + W S+  S  TS+TA L+KLR
Sbjct:   501 VETRVGAHEIFSVILLQSSGQSQAGLASVRASGYLNESRNWRSDTTSAFTSVTARLDKLR 560

Query:   457 RDKNGVKMDKSRYN-VHDEIRGRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVD 515
             ++K+GVK++K+ YN  H++++   S         +PK    F+KL+SII+RTAG  NL D
Sbjct:   561 KEKDGVKIEKNGYNNTHEDLKNYKS---------SPK----FHKLNSIIDRTAGFINLAD 607

Query:   516 VEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSFNLTLISLRLKNPNDKLMAR 575
             + P +MKFTEDQI QLLS+FWIQ+ LPD LPSN EAIAHSF+L L+SLRLKNP+D L+ R
Sbjct:   608 MLPSMMKFTEDQIGQLLSAFWIQSALPDILPSNIEAIAHSFSLVLLSLRLKNPDDGLVVR 667

Query:   576 FFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDL 635
              FQL   LR LSLD NNG LPSVC+R IL +ST MLMFAAK+Y IP + ++LK  +P D+
Sbjct:   668 AFQLLFSLRTLSLDLNNGTLPSVCKRLILALSTSMLMFAAKIYQIPHICEMLKAQLPGDV 727

Query:   636 DPYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYESDKIILDIIVQNLST 695
             DPY+ IGDDLQ++VRPQA++K++GS +D+Q ATS+++E+R+KV  S+ II DI+ +NL  
Sbjct:   728 DPYLFIGDDLQLHVRPQANMKDFGSSSDSQMATSMLFEMRSKVELSNTIITDIVAKNLPK 787

Query:   696 IIEVEADDLAKQLQEPFTPDDAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVED 755
             + ++E  D+  Q+ E FTPDDA MFG +  +    +Q IS  KESLSFDEDI   S+VED
Sbjct:   788 LSKLEEADVKMQILEQFTPDDAFMFGSRPNIEPQPNQSIS--KESLSFDEDIPAGSMVED 845

Query:   756 DATSEASVANLSRFIPRMPTPSPT-SHIVSIGQLMESALKVAGQVAGSTISTSPLPYNTL 814
             + TSE SV    RF PR  +PSP+   ++SIGQLMESAL+VAGQV GS++STSPLPY+T+
Sbjct:   846 EVTSELSV----RFPPR-GSPSPSIPQVISIGQLMESALEVAGQVVGSSVSTSPLPYDTM 900

Query:   815 AGHCEALGSGTRQKLSNWLIHEN 837
                CE  G+GTR+KLS WL  EN
Sbjct:   901 TNRCETFGTGTREKLSRWLATEN 923

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2054416 AT2G41830 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178953 AT5G21080 "AT5G21080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198846 AT1G05960 "AT1G05960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14156 EFR3A "Protein EFR3 homolog A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCW6 EFR3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1305976 Efr3a "EFR3 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1923990 Efr3a "EFR3 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BRM7 EFR3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00016311 C32D5.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		898
KOG1877		819	consensus Putative transmembrane protein cmp44E [G	100.0
KOG1877		819	consensus Putative transmembrane protein cmp44E [G	93.83
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.26

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.8e-112  Score=988.02  Aligned_cols=658  Identities=25%  Similarity=0.348  Sum_probs=564.4

Q ss_pred             CCCcccccCCCcccCCChhHHHHHHHhhhcCCCCCCC---------------------chhhhhh------------hHH
Q 046182           12 CGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADS---------------------TYTHNIE------------KFV   58 (898)
Q Consensus        12 C~~lC~cCpaLR~rSrqpvKRYKkLva~IFP~~p~~g---------------------kI~~yLe------------g~V   58 (898)
                      |+|||||||||||       |||||||+||||+||||                     |||+||+            |+|
T Consensus         1 ~~s~c~cc~alR~-------RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v   73 (819)
T KOG1877|consen    1 CESMCCCCPALRP-------RYKKLVDNIFPRSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSV   73 (819)
T ss_pred             CCceeeecHHHHH-------HHHHHHHHhCCCCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcch
Confidence            8999999999999       99999999999999999                     9999999            999


Q ss_pred             HHHHH------Hhh--hh-hH-H-------hHhhcCcchhhhhhhhHHHHhhhcccccc-------cchhhhhhh-hcCC
Q 046182           59 KKVCK------LAC--EN-GV-E-------HRRSLRASSLQCLSAMVWFMAEFSCIFAD-------FDEIVSATL-DNYE  113 (898)
Q Consensus        59 kIvck------lgC--qt-L~-e-------kll~lr~a~LQ~Lstmv~Fm~efS~I~~d-------~D~~VS~fl-m~y~  113 (898)
                      +|+|+      ++|  |. +| +       |+|+...+.+|+||++ +|++ |++|++|       |||||++|. |||+
T Consensus        74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~-sf~~-F~~i~~d~~sy~~~yd~Fi~kf~~l~he  151 (819)
T KOG1877|consen   74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTN-SFVK-FANIEEDGPSYHRNYDFFISKFSSLCHE  151 (819)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhh-HHHH-HHhhcccCchhhhhhHHHHHHHHHHhhc
Confidence            99977      899  43 44 2       8999999999999999 9999 9999999       899999999 9999


Q ss_pred             CCCCCCcccccCCCCCcccceeeeccCCCC--------CCCCCCcCCC--cccCCCCCCC--------CCCCC-CccccC
Q 046182          114 PDTCSEDDDERGEPHHNWVDEVVRCEGRGA--------AAGSDTGPSS--MMIRPRPEKK--------DPSAL-TREEVE  174 (898)
Q Consensus       114 ~~~~~~~~~~~r~~g~~gvqgVvrk~~~d~--------~~m~kivPsl--nmq~~~~~~~--------~~~~~-~~ee~e  174 (898)
                      . .+.+..+..|.+|++||+||||+++.|+        +||++|||++  |||......+        ..... -.+...
T Consensus       152 ~-~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~  230 (819)
T KOG1877|consen  152 R-GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTS  230 (819)
T ss_pred             c-cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCccc
Confidence            6 5666678899999999999999997765        8999999999  9993331111        11222 233344


Q ss_pred             ChHHHHHHHHHHHHHHhHhhhccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH--hcCCceehHHHHHhhhccC
Q 046182          175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME--TSGNQQLILASVIHHLDHK  252 (898)
Q Consensus       175 nP~~wA~vCLrnma~lareatTiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe--qSgnshllLs~LikHLDhK  252 (898)
                      +|++||++|+|||+..|+++||||+||+|||.|||.|.+|.|+||||++||+   ++|+  |.|++|+|++.||+|||||
T Consensus       231 ~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~---~vi~~iq~q~s~~v~~~li~hLd~~  307 (819)
T KOG1877|consen  231 DPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFK---IVIYLIQRQYSYFVIQELINHLDNK  307 (819)
T ss_pred             CcchhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHH---HHHHHHhhccchHHHHHHHHHHHhh
Confidence            6999999999999999999999999999999999999999999999999999   7777  8889999999999999999


Q ss_pred             C-CCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCcc------chhHHHHHHHHHHHHHH
Q 046182          253 N-VSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQ------ESNLNILLRNSIEDCLL  325 (898)
Q Consensus       253 n-v~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~------~~~~n~~lQ~Avi~cLg  325 (898)
                      + +++.|.+++.||.|...+++..+  -+|+++.+||||+||||+|++++ ++.+.+      +...|..+|+++++.++
T Consensus       308 ~~~~~~~r~~~~iv~~~~~~i~~~~--v~ps~l~i~n~l~rhLR~si~~s-~~~~~~~~~~~~~~~~e~~~q~~li~~~~  384 (819)
T KOG1877|consen  308 KLVAKKPRLGLSIVLVSIALIAATS--VGPSVLIIFNDLLRHLRKSISFS-DDGNIGLETDNGNYMIEAVVQEALIQLTK  384 (819)
T ss_pred             cccccCccccchhHHHHHHHHHhcc--cchHHHHHHHHHHHHHHhhcccc-ccccCCchhhhhHHHHHHHHHHHHHHHHH
Confidence            9 99999999999999887777542  23777777999999999999998 333444      36689999999999999


Q ss_pred             HHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHH-HHHHhhhccC------CCCCcHHHHHHHHHHccCCC
Q 046182          326 EIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHM-ISVASISSRS------QQVFPEALLVQILKAMLHPN  398 (898)
Q Consensus       326 q~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~i-l~Sl~~vs~~------~kaFPeall~qLL~amlhpD  398 (898)
                      .|++.+||||+++.||++| .|||   ..+|..+.+..++|.| +++++.++.+      ..+||++||+.||...+.+|
T Consensus       385 ~~~~~~P~~q~~~vm~~~~-~~v~---~~sk~~~~~~~liq~~~~~s~L~~s~s~~i~~~~l~~~sS~L~sll~~~l~r~  460 (819)
T KOG1877|consen  385 KFANTLPDYQKMAVMLFIM-SKVP---DLSKPSILGELLIQAMLLKSLLSVSTSYQIVSVALAFPSSFLDSLLSTALMRD  460 (819)
T ss_pred             hhcccCchHHHHHHHHhhc-cccc---ccCCccccHHHHHHHHHHHHHhhhhhcceeeeehhhccHHHhhhhhhhhcCcc
Confidence            9999999999999999999 8888   5567777788899999 9999999864      44689999999999999999


Q ss_pred             chhhHHHHHHHHHhhcCCCCCCcccccccccCCCCCccccccccccchhhHHH--HHhhhhcccCccccccccccccccc
Q 046182          399 VETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITAL--LEKLRRDKNGVKMDKSRYNVHDEIR  476 (898)
Q Consensus       399 ~EtRv~ah~Ifs~lL~ps~~~p~~~~~~~~~~~~~d~~~~~s~~~s~~s~~~~--~dkL~~eK~s~q~~~~~~~~~~~~~  476 (898)
                      .+.|+...+|||.+.++|.|...+                  +.++.  ..+.  ..+|+++|++++             
T Consensus       461 ~~~~~~t~eil~sl~d~~~n~a~l------------------~~v~~--~~~~~~~~~ls~~~~s~~-------------  507 (819)
T KOG1877|consen  461 AELRLVTLEILHSLKDSHDNTAKL------------------SGVSY--LLESVDSLTLSREKPSRQ-------------  507 (819)
T ss_pred             cchhhHHHHHHHHHHHhhcccccc------------------cccee--eccccchhhhcccchhHH-------------
Confidence            999999999999999999995443                  11322  1111  368999999998             


Q ss_pred             cCCCCccccccCCCCCCCCccccccccccccCCCCCCCCCcccceecchhHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 046182          477 GRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSF  556 (898)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~fmrLs~~q~~lLlssIw~qa~~~~N~P~NyEAIahTy  556 (898)
                                                              |..|||..+.|+..++..+|.+   .+|+|+|||++|.|+
T Consensus       508 ----------------------------------------D~~f~kk~~~~i~~~~~~~~~~---~~~~~~n~~~~~~~~  544 (819)
T KOG1877|consen  508 ----------------------------------------DTIFMKKNSQQIYRLLYSITAT---SDNVPENYEAIYNTA  544 (819)
T ss_pred             ----------------------------------------HHHHHHhchHHHHHHHHHhhhh---hhcchhhHHHHhhhH
Confidence                                                    8999995555555555555554   459999999999998


Q ss_pred             HHHHHHhhcCCCChHHHHhhhhhhhhhhhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCcchhHHHhhhccCCCC
Q 046182          557 NLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLD  636 (898)
Q Consensus       557 sLaLL~~r~K~ss~e~Lv~~fqLafSLq~isL~~~~~~Lpps~RrSLftLaasmLifssk~~nip~L~~~vk~vl~~rvd  636 (898)
                      +|.+++.    +++|+|+++||++|++|++++.++ ++||+++||+|||++++||+|+|++++||            ++|
T Consensus       545 sl~~i~~----~~~e~li~~~~~~~~l~~ls~~~~-~~lp~~~r~~i~al~as~lv~~s~~~~i~------------~l~  607 (819)
T KOG1877|consen  545 SLILIEK----SINEVLIELFRLALTLQQLSLMNE-RPLPNSRRRSIFALAASYLVLISQAFAIP------------TLD  607 (819)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcccccHHHHHHHHHHHHHHHhcCc------------ccc
Confidence            8877776    899999999999999999999998 89999999999999999999999999999            478


Q ss_pred             CccccccCcceEEecCCCcccCCCccchHHHHHHHHhhhcccch-hhHHHHHHHHHhhccchhHhHHHHHHHhcCCCCCC
Q 046182          637 PYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYE-SDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPD  715 (898)
Q Consensus       637 PfL~Lv~D~kL~a~~~~~~~~YGS~eD~~~Al~~Ls~i~~~~~~-s~e~~~~~i~~~l~~~~e~e~~~i~~qLl~~Fspd  715 (898)
                      ||+++|+|+|+.|+       ||+..|+++|.+.|+.+..+... +++..+.+|++.+.++++.|....++||+.     
T Consensus       608 ~~~~~v~D~~~~a~-------~~~~~d~~~ass~l~~~~~~~~s~s~~~~~~~v~k~l~~~s~k~~~~~~~rL~~-----  675 (819)
T KOG1877|consen  608 PFLQKVDDCRLEAV-------EGPSSDDNDASSTLSEIALAAESLSRELPALMVVKELIKESLKESGKDSERLFT-----  675 (819)
T ss_pred             hHHHHHHHHHHHhc-------cCcccCchhhhhhHHHHHhhcccccccccHHHHHHHHHhhcccccchHHHHHhh-----
Confidence            99999999999887       99999999999999999766555 999999999999999999999999999988     


Q ss_pred             cccccCcccccccccccccccccccCCccccccCCCCccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHhh
Q 046182          716 DAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTPSPTSHIVSIGQLMESALKV  795 (898)
Q Consensus       716 d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddd~~~e~s~~~~s~~~~~~~~s~~~~~~lsv~qLlesv~et  795 (898)
                       +||+|+|+.  .++ ..++.++++..       +  .++..+++               -..++..++||++++++.++
T Consensus       676 -~~p~g~q~~--~~p-~~~~~~~~~~~-------d--~~~~~~s~---------------~d~~~~~~~vd~~~n~~~~~  727 (819)
T KOG1877|consen  676 -ACPYGSQLT--KEP-GYQSISKESKP-------D--REDQRFSS---------------NDLVTFSLDVDKILNPPEET  727 (819)
T ss_pred             -hCCcccccc--CCC-cccccccccCC-------c--cccccccc---------------ccccccccchhhccCCcccc
Confidence             999999988  554 55666666632       1  01111111               12346678999999999998


Q ss_pred             hcccccccccCCC-CChhhHhhhhhhhhcccchhhh
Q 046182          796 AGQVAGSTISTSP-LPYNTLAGHCEALGSGTRQKLS  830 (898)
Q Consensus       796 a~qv~~~~vs~~p-~py~~m~~qCEal~~gkqqKmS  830 (898)
                      ++       |++| +.|++|+.| |++++|||||++
T Consensus       728 t~-------~~~~~vs~~~~~~~-e~~~~~~~q~~~  755 (819)
T KOG1877|consen  728 TK-------SNPPEVSIDQMDAH-EATLSGKQQKRS  755 (819)
T ss_pred             cc-------CCcccCCHHHHhhH-HHHhhhhhhhcc
Confidence            87       7777 999999999 999999999999

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		898
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 81.1 bits (199), Expect = 1e-15
 Identities = 89/607 (14%), Positives = 186/607 (30%), Gaps = 159/607 (26%)

Query: 289 DLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKL 348
           D+      +F    +    Q+   +IL +  I+  ++     +  T  LF     TL   
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFW----TLLSK 74

Query: 349 PSSGV------------------IARATLGSLIILAHMISVASISSRSQQVFP------E 384
               V                  I        ++    I          QVF        
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 385 ALLVQILKAMLHPNVETRVGAHQIF----SVLLIPSPINQHHEVASVRSGYLHEPQQWHS 440
              +++ +A+L       V    +     + + +       ++V       +     W +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIF----WLN 188

Query: 441 --NAASTTSITALLEKL--RRDKNGVKMDKSRYNVH---DEIRGRDS------------- 480
             N  S  ++  +L+KL  + D N         N+      I+                 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 481 VEDD-WKQGHAPK---------TSSNFYKLSSIIER-TAGPTNLVDVEPCVMKFTEDQIV 529
           V  +                  T+        + +  +A  T  + ++   M  T D++ 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 530 QLLSSFWIQATLPDNLPSNFEAIAHS-FNLTLISLRLKNP-----------NDKLM---- 573
            LL   ++    P +LP   E +  +   L++I+  +++             DKL     
Sbjct: 305 SLLLK-YLD-CRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 574 ------------ARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIP 621
                         F +L +F       P +  +P++      ++S   L++   + +  
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVF-------PPSAHIPTI------LLS---LIWFDVIKSDV 404

Query: 622 G--LNDLL-KTLIPNDLDPY-MGIGDDLQIYVRPQADVKEYGSFTDNQQA--TSLI--YE 673
              +N L   +L+        + I   + + ++ +          +N+ A   S++  Y 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKL---------ENEYALHRSIVDHYN 454

Query: 674 LRNKVYESDKIILDI--------IVQNLSTIIEVEADDLAKQLQEPFTPDDAIMFGPQSI 725
           +  K ++SD +I           I  +L  I   E   L + +   F  D    F  Q I
Sbjct: 455 IP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FL-DFR--FLEQKI 507

Query: 726 LALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTP---SPTSHI 782
                +   S S  +           + ++D   E  V  +  F+P++      S  + +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 783 VSIGQLM 789
           + I  LM
Sbjct: 568 LRIA-LM 573

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		898
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.15
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	90.92
1qgr_A		876	Protein (importin beta subunit); transport recepto	88.96
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	86.58
1qgr_A		876	Protein (importin beta subunit); transport recepto	85.27
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	85.17
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	84.25
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	83.08
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	81.2
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	80.23
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	80.07

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

Probab=91.15  E-value=0.87  Score=45.86  Aligned_cols=137  Identities=13%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CChHH--HHHHHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcCCceehHHHHHhhh
Q 046182          174 ETPKV--WARICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHL  249 (898)
Q Consensus       174 enP~~--wA~vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshllLs~LikHL  249 (898)
                      .|+.+  -|-.||..|++-.+..+  .+..++.+++..|...+. .- ..-|..++.   .++...+ -..++..|...|
T Consensus        69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~-~v-r~~a~~aL~---~~~~~~~-~~~ll~~l~~~l  142 (242)
T 2qk2_A           69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKP-NV-VTALREAID---AIYASTS-LEAQQESIVESL  142 (242)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCH-HH-HHHHHHHHH---HHHTTSC-HHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHH---HHHHcCC-HHHHHHHHHHHH
Confidence            45555  67778888886545444  578899999999986542 11 344555555   5665433 235678888888


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhc
Q 046182          250 DHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAK  329 (898)
Q Consensus       250 DhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~  329 (898)
                      +||    +|.+|..++..+..++.....+  ......+..++.+|-+.+.           +.+...+++-.+||+.++.
T Consensus       143 ~~~----~~~vr~~~l~~l~~~l~~~~~~--~~~~~~l~~l~p~l~~~l~-----------D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          143 SNK----NPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLVKTLN-----------EPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TCS----CHHHHHHHHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHT-----------SSCHHHHHHHHHHHHHHHH
T ss_pred             cCC----ChHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHH
Confidence            884    6899999999988876543211  1123455677777777773           2356789999999999999


Q ss_pred             cCCC
Q 046182          330 GIGD  333 (898)
Q Consensus       330 kv~D  333 (898)
                      .+|.
T Consensus       206 ~vg~  209 (242)
T 2qk2_A          206 LMGD  209 (242)
T ss_dssp             HHCH
T ss_pred             HcCH
Confidence            9985

PyMOL of 2qk2

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		898
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.87
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	82.43

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.96  Score=49.15  Aligned_cols=144  Identities=14%  Similarity=0.111  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC--CceehHHHHHhhhccCCC
Q 046182          179 WARICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG--NQQLILASVIHHLDHKNV  254 (898)
Q Consensus       179 wA~vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg--nshllLs~LikHLDhKnv  254 (898)
                      .+-.++..+++...+.+  .+..++..++..+.+...|.- ..-|+.++.++..-+...-  +..-++..+++.|...++
T Consensus       627 ~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~  705 (876)
T d1qgra_         627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQV-CLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV  705 (876)
T ss_dssp             HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccC
Confidence            34446666665555555  467788889999988776655 5667777775543333211  344677888888865344


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhc
Q 046182          255 SHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAK  329 (898)
Q Consensus       255 ~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~  329 (898)
                        ++.+|..|+..+..++...+....+-    +..++..|.+.++...+..+....+.-..+++++.+|...+-.
T Consensus       706 --~~~~k~~~~~~i~~i~~~~~~~~~~y----l~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~  774 (876)
T d1qgra_         706 --HRSVKPQILSVFGDIALAIGGEFKKY----LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQ  774 (876)
T ss_dssp             --CGGGHHHHHHHHHHHHHHHGGGGGGG----HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHHHhHhhHHH----HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence              67899999999999998776554443    3555555666665444332221244556788899998877643

PyMOL of d1qgra_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure