Citrus Sinensis ID: 046185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHccEEEEEEcccccccccccccccccccccccEEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHcccccccHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHccccccccccHHHcccccccccEEEEcccEEEEEEcccccccEcccccccccccccccEEEEEEccccEEEc
Coil and Loop (DISEMBL)
kylstsqgnfeTSWAKIHNLLELQHTDIKASFEKSLTVVQHqfkpakfkhIRGFISIIALNITLSELKRAISigvdrsacgcvicqthglpcaheiteykrechpipleriDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEianpgctflldpevktrtrgrpsikvdtsthrdpsafeislsgqescslnvksnsvtttkskaevkrrgrpktkvnnstpvksitfidefpvgLQSYIHHIKDvvadgncgFRAIADLIGLGEDGWVQVRKDLLNELYSHLDdygklygperVNELIHILSYyenwpassdrwmtmpdmGHLIASCYNVVLFHLSsvqcltflplrsepvhiLSRRNIALGYVFGNHFVEV
Flexible Loop (DISEMBL)
kylstsqgnfeTSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKpakfkhirGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQkqkvklsfqPEFELILDILKKLKEIANpgctflldpevktrtrgrpsikvdtsthrdpSAFEislsgqescslnvksnsvtttkskaevkrrgrpktkvnnstpvksitfIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Low Complexity Region (SEG)
KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPefelildilkklkeiANPGCTFLLDPEVKTRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Disordered region (IsUnstruct)
*********FETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDP********************************************************************VKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV**
Disordered Region (DISOPRED)
*****SQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAI**GVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQ*********************************************************************************************************ITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Disordered Region (DISEMBL)
********NFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRGRPSIKVDTSTHRDPSAFEISLSGQES*****************************NNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Disordered Region (DISPRO)
**L*TSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPE**************************************************************NNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
297744547	701	unnamed protein product [Vitis vinifera]	0.857	0.465	0.439	8e-81
356499731	878	PREDICTED: uncharacterized protein LOC10	0.944	0.408	0.393	2e-64
356536595	877	PREDICTED: uncharacterized protein LOC10	0.947	0.410	0.382	5e-63
92893886	985	Ovarian tumour, otubain [Medicago trunca	0.986	0.380	0.330	2e-44
147776975	773	hypothetical protein VITISV_001036 [Viti	0.371	0.182	0.587	2e-43
87241356	795	Ovarian tumour, otubain [Medicago trunca	0.986	0.471	0.327	4e-43
357454037	817	Far-red impaired response-like protein [	0.976	0.454	0.330	3e-42
357438051	1379	Cysteine-rich receptor-like protein kina	0.986	0.271	0.320	1e-41
124361025	1063	Ovarian tumour, otubain, putative [Medic	0.986	0.352	0.322	1e-40
357437355	515	hypothetical protein MTR_1g015680 [Medic	0.881	0.650	0.327	5e-40

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 167/380 (43%), Positives = 221/380 (58%), Gaps = 54/380 (14%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIAL 60
           + L  S+G+ E+SW KIH+LLELQH DIK SFE SLT VQH FK   +  +RG +S  AL
Sbjct: 291 RQLGLSRGDIESSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGSVSKSAL 350

Query: 61  NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNL 120
            I + E  R+ SIGVD SACGCV  +THGLPCAHEI+ YK    PIPL  +D HW+KL+L
Sbjct: 351 CILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDL 410

Query: 121 VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRGRPSIKVDTSTH 180
           V+V+ K+   +SF    EL         +I        L             +++  ST 
Sbjct: 411 VSVSGKKVQDVSFTTAMELFYKRFMDADDIGKQQLVMKL-------------MELVNSTS 457

Query: 181 RDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFP 240
               A + ++  +E C+                                         FP
Sbjct: 458 TSLVAPKENVKTKEGCT---------------------------------------SSFP 478

Query: 241 VGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLY-GP 299
            GLQ YI H+KDV ADGNCGFR IA  +G+GE+GW QVR+D+L EL ++  +Y +L+  P
Sbjct: 479 EGLQPYIMHVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWAEYAQLFRDP 538

Query: 300 ERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPV 359
            RV+ELIH+L ++++ PA  DRWMTMPDMGH+IAS YNVVL ++S   CLTFLPLRS P 
Sbjct: 539 IRVDELIHVLEHFQS-PADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSAPT 597

Query: 360 HILSRRNIALGYVFGNHFVE 379
            +  RR +++G++  NHFVE
Sbjct: 598 PLPMRRVLSIGFINDNHFVE 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/396 (39%), Positives = 216/396 (54%), Gaps = 37/396 (9%)

Query: 3   LSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNI 62
           L  S+ +  + W  + N++ LQHT+I+ASFEKS  VV+H+     +  + GF+S  AL+ 
Sbjct: 448 LQDSKEDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHRHNTPFYVKLVGFVSRSALSH 507

Query: 63  TLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVA 122
              E  R  + G+D S CGC++  THGLPCA E+  Y   CHPIPLE I  HW+KL    
Sbjct: 508 ITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAIHAHWRKLKFSD 567

Query: 123 -VTQKQKVKLSFQPEFELI------LD------ILKKLKEIANPGCTFLLDPEVKTRTRG 169
             T     +LS QPE + +      LD      ++ KL E+A P       P  +  T+G
Sbjct: 568 HGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPEEVGTKG 627

Query: 170 RPS---IKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNN 226
            P     K D ST  DPS  E++L      + ++ S+  T  +SK   +RR  P      
Sbjct: 628 APEGLRWKSDGSTKFDPSYLELALRPARDSTSSLSSSQKTVHESK---RRRVLP------ 678

Query: 227 STPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNEL 286
                    +D+FPV +  +I  I DV  D NCG+RA+A  +G+GE+ W  VR+DL+ EL
Sbjct: 679 --------MMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIREL 730

Query: 287 YSHLDDYGKLYGP-ERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSS 345
               D+Y KL+G  +RV EL    S Y    AS   WMT+PDMG++IAS YNVVL  LS 
Sbjct: 731 QQWQDNYAKLFGSNDRVAELRK--SLYVGKQASVASWMTIPDMGYVIASRYNVVLVTLSL 788

Query: 346 VQCLTFLPLRSE-PVHILSRRNIALGYVFGNHFVEV 380
            +C+TF PLR   P+   S R I++G+V   HFV+V
Sbjct: 789 QECMTFFPLRGRPPLSQSSHRLISIGFVHKCHFVQV 824

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 152/397 (38%), Positives = 218/397 (54%), Gaps = 37/397 (9%)

Query: 3   LSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNI 62
           L  S+ +  + W  + N++ LQH +I+ASFEKS+ VV+H+     +  + GF+S  AL+ 
Sbjct: 445 LQDSKEDMCSYWDAMKNIITLQHKEIEASFEKSINVVEHRHNTPFYIKLVGFVSRSALSH 504

Query: 63  TLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKLNLVA 122
            + E  R  + G+D S CGC++  THGLPCA E+  Y   CHPIPLE I +HW+KL    
Sbjct: 505 IIDEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYNTMCHPIPLEAIHVHWRKLKFSD 564

Query: 123 -VTQKQKVKLSFQPEFELILD------------ILKKLKEIANP----GCTFLLDPEVKT 165
            V+  +  +LS QPE   + +            ++ KL EIA P     C  L +   K 
Sbjct: 565 HVSNDEGTELSLQPEIGALYNRFQELDYAGKIILMAKLHEIAFPVKISKCPPLEEVGTKH 624

Query: 166 RTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVN 225
              G P +K D ST  DPS +E   +     + ++  +  ++ K   E KRR        
Sbjct: 625 ALEG-PRLKSDGSTKFDPSYWEHVHALHP--THDITKSLPSSQKPVHESKRR-------- 673

Query: 226 NSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNE 285
                + +  +D+FPV +  +I  I DV  D NCG+RA+A  +G+GE+ W  VR+DL+ E
Sbjct: 674 -----RVLPMMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRE 728

Query: 286 LYSHLDDYGKLYGP-ERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLS 344
           L    D+Y KL+G  +RV EL    S Y    AS   WMT+PDMG++IAS YNVVL  LS
Sbjct: 729 LQQWQDNYAKLFGSNDRVAELRQ--SLYVGKQASVASWMTIPDMGYVIASRYNVVLVTLS 786

Query: 345 SVQCLTFLPLRSE-PVHILSRRNIALGYVFGNHFVEV 380
             +C+TF PLR   P+   S R I++G+V   HFV+V
Sbjct: 787 LQECMTFFPLRGRPPLSQSSYRLISIGFVHKCHFVQV 823

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 210/412 (50%), Gaps = 37/412 (8%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KIH++L LQ T I+ SF +++ V++H+FK    +  + G +S  A
Sbjct: 480 KYLDNSVGDLGTCWEKIHHMLLLQFTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNA 539

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E +   ++ +D   CGCV   ++GLPCA EI     +  PI L+ I  HW +L
Sbjct: 540 LDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRL 599

Query: 119 NL----------VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTR 168
           ++          V V  K  V+   +  F++ L++ + L+++A P  T +  P  K  T+
Sbjct: 600 SMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTK 659

Query: 169 GRPSIKVD--------TSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR- 219
           G    KVD        TST R PS++E+ +  Q   S    S + ++ K K    R G+ 
Sbjct: 660 GAKK-KVDIARSKGKITSTSRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKGA-RLGKT 716

Query: 220 ------PKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGED 273
                 P T+      +  +  ID  P  +  +I  + DV+ DG+CGFRAIA+ +GL E 
Sbjct: 717 SLSPLPPPTRYPKPKAIPVMRPIDYMPRFMVPFIEKVVDVIGDGHCGFRAIAEFMGLTEK 776

Query: 274 GWVQVRKDLLNELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMG 329
             + +R  L+ EL  H DDY +++ G +R N +++ L    N    +   D+W+T PDMG
Sbjct: 777 NHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFPDMG 836

Query: 330 HLIASCYN---VVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV 378
           H++A+ Y    VVL +L   +  +F PLR  P     +  I       NHFV
Sbjct: 837 HIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPGNQKTPILCLGAIPNHFV 888

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 110/143 (76%), Gaps = 2/143 (1%)

Query: 239 FPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLY- 297
           FP GLQ YI H+KDV ADGNCGFR IA  +G+GE+GW QVR+D+L EL ++ D+Y +L+ 
Sbjct: 575 FPEGLQPYIMHVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWDEYAQLFR 634

Query: 298 GPERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSE 357
            P RV+ELIH L ++++ PA  DRWMTMPDMGH+IAS YNVVL ++S   CLTFLPLRS 
Sbjct: 635 DPIRVDELIHXLEHFQS-PADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSA 693

Query: 358 PVHILSRRNIALGYVFGNHFVEV 380
           P  +  RR +++G++  NHFVE+
Sbjct: 694 PTPLPMRRVLSIGFINDNHFVEI 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87241356|gb|ABD33214.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 209/412 (50%), Gaps = 37/412 (8%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KIH++L LQ T I+ SF +++ V++H+FK    +  + G +S  A
Sbjct: 290 KYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNA 349

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E +   ++ +D   CGCV   ++GLPCA EI     +  PI L+ I  HW +L
Sbjct: 350 LDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLFQEKPILLDEIYHHWLRL 409

Query: 119 NL----------VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTR 168
           ++          V V  K  V+   +  F++ L++ + L+++A P  T +  P  K  T+
Sbjct: 410 SMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTK 469

Query: 169 GRPSIKVD--------TSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR- 219
           G    KVD        TST R PS++E+ +  Q   S    S + ++ K K    R G+ 
Sbjct: 470 GAKK-KVDIARSKGKITSTSRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKGA-RLGKT 526

Query: 220 ------PKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGED 273
                 P T+      +  +  ID  P  +  +I  + DV+ DG+CGFRAIA+ +GL E 
Sbjct: 527 SLSPLPPPTRYPKPKAIPVMRPIDYMPRFMLPFIEKVVDVIGDGHCGFRAIAEFMGLTEK 586

Query: 274 GWVQVRKDLLNELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMG 329
             + +R  L+ EL  H DDY +++ G +R N +++ L    N    +   D+W+T  DMG
Sbjct: 587 NHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFSDMG 646

Query: 330 HLIASCYN---VVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV 378
           H++A+ Y    VVL +L   +  +F PLR  P     +  I       NHFV
Sbjct: 647 HIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPDNQKTPILCLGAIPNHFV 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454037|ref|XP_003597299.1| Far-red impaired response-like protein [Medicago truncatula] gi|355486347|gb|AES67550.1| Far-red impaired response-like protein [Medicago truncatula]

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 206/402 (51%), Gaps = 31/402 (7%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KI ++L LQ T I+ +F +S++V++H+FK    +  + G +S  A
Sbjct: 326 KYLDNSVGDLGTCWEKIDDMLLLQFTAIQTTFGQSVSVLEHRFKDVTLYSDLGGHVSRYA 385

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E     ++ ++   CGCV   ++GLP A EI     E  PI L+ I  HW +L
Sbjct: 386 LDNIALEETHCRETLCMNNDICGCVQRTSYGLPYACEIATKLLEEKPILLDEIHHHWHRL 445

Query: 119 NLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRG--------R 170
            +     ++  ++ F  E EL L++ + L+++  P  T +  P  K  T+G        R
Sbjct: 446 RM----GEEINEVDFCVEVELKLEVKEVLRQLEFPETTMMSPPPRKVPTKGAKNKVDIAR 501

Query: 171 PSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR-------PKTK 223
             IK+ TST R PS++E+ +  Q   S    S + ++ K K  V R G+       P T+
Sbjct: 502 SKIKI-TSTSRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKCV-RLGKTSLNPLPPPTR 558

Query: 224 VNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLL 283
                 +  +  ID  P  +  +I  + DV+ DG+CGFRAIA+ +GL E   + +R  L+
Sbjct: 559 YPKPKAIPVMRPIDYMPRFMLPFIKKMVDVIGDGHCGFRAIAEFMGLTEKNHIMIRTHLI 618

Query: 284 NELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMGHLIASCYN-- 337
            EL  H DDY +++ G +R N +++ L    N  + +   D+W+T  DMGH+IA+ Y   
Sbjct: 619 QELKDHRDDYVEVFAGEDRYNYILNDLHPPANTKSCAHLVDKWLTFSDMGHIIANYYQRC 678

Query: 338 -VVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV 378
            VVL +L      +F PLR  P     +  I       NHFV
Sbjct: 679 VVVLTNLEIGNSESFFPLRGPPPPGKQKTLILCLGAIPNHFV 720

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438051|ref|XP_003589301.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355478349|gb|AES59552.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula]

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 205/412 (49%), Gaps = 37/412 (8%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KIH++L LQ T I+ SF  S+ +++H+FK    +  + G +S  A
Sbjct: 485 KYLDNSVGDLGTCWEKIHDMLLLQFTAIQTSFGHSVCMLEHRFKDVTLYSGLGGHVSRYA 544

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E +   ++ +D   CGC    ++GLPCA EI     +  PI L+ I  HW +L
Sbjct: 545 LDNIALEETRCRETLCMDNDICGCAQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRL 604

Query: 119 NL----------VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTR 168
            +          V V  K  V+   +  F++ L++ + L+++A P  T +  P  K  T+
Sbjct: 605 YMGEESNEVAFCVEVELKAIVECLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTK 664

Query: 169 GRPSIKVD--------TSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR- 219
           G    KVD        TST R PS++E+ +  Q   S    S + ++ K K    R G+ 
Sbjct: 665 GAKK-KVDIARSKGKITSTSRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKGA-RLGKT 721

Query: 220 ------PKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGED 273
                 P T+      +  +  ID     +  +I  + DV+ DG+CGFRAIA+ +GL E 
Sbjct: 722 SLSPLPPPTRYPKPKAIPVMRPIDYMTRFMLPFIEKVVDVIGDGHCGFRAIAEFMGLTEK 781

Query: 274 GWVQVRKDLLNELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMG 329
             + +R  L+ EL  H DDY +++ G +R N +++ L    N    +   D+W+T PDMG
Sbjct: 782 NHLMIRTHLIQELIDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFPDMG 841

Query: 330 HLIASCYN---VVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV 378
           H++A+ Y    VVL +L   +  +  PLR  P+    +  I       NHF 
Sbjct: 842 HIVANYYKMCVVVLTNLEVGKSESLFPLRGPPLPGNQKTLILCIGAIPNHFA 893

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361025|gb|ABN08997.1| Ovarian tumour, otubain, putative [Medicago truncatula]

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 207/412 (50%), Gaps = 37/412 (8%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KIH++L LQ T I+ SF +++ V++H+FK    +  + G +S  A
Sbjct: 558 KYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNA 617

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E +   ++ +D    GCV   ++GLPCA EI     +  PI L+ I  HW +L
Sbjct: 618 LDNIALEEKRCRETLCMDNDIYGCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRL 677

Query: 119 NL----------VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTR 168
           ++          V V  K  V+   +  F++ L++ + L+++A P  T +  P  K  T+
Sbjct: 678 SMGEQSNKDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTK 737

Query: 169 GRPSIKVD--------TSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR- 219
           G    KVD        TST R PS++E+ +  Q   S    S + ++ K K    R G+ 
Sbjct: 738 GAKK-KVDIARSKGKITSTSRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKGA-RLGKT 794

Query: 220 ------PKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGED 273
                 P T+      +  +  ID  P  +  +I  +  V+ DG+CGF AIA+ +GL E 
Sbjct: 795 SLSPLPPPTRYPKPKAIPVMRPIDYMPRFMLPFIEKVVHVIGDGHCGFWAIAEFMGLTEK 854

Query: 274 GWVQVRKDLLNELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMG 329
             + +R  L+ EL  H DDY +++ G +R N +++ L    N    +   D+W+T PDMG
Sbjct: 855 NHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFPDMG 914

Query: 330 HLIASCYN---VVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHFV 378
           H++A+ Y    VVL +L   +  +F PLR  P     +  I       NHFV
Sbjct: 915 HIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPGNQKTLILCLGAIPNHFV 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437355|ref|XP_003588953.1| hypothetical protein MTR_1g015680 [Medicago truncatula] gi|355478001|gb|AES59204.1| hypothetical protein MTR_1g015680 [Medicago truncatula]

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 192/369 (52%), Gaps = 34/369 (9%)

Query: 1   KYLSTSQGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAK-FKHIRGFISIIA 59
           KYL  S G+  T W KIH++L LQ T I+ SF +++ V++H+FK    +  + G +S  A
Sbjct: 76  KYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVCVLEHRFKDVTLYSGLGGHVSRNA 135

Query: 60  L-NITLSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECHPIPLERIDLHWKKL 118
           L NI L E +   ++ +D   CGCV   ++GLPCA EI     +  PI L+ I  HW +L
Sbjct: 136 LDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRL 195

Query: 119 NL----------VAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTR 168
           ++          V V  K  V+   +  F++ L++ + L+++A P  T +  P  K  T+
Sbjct: 196 SMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTK 255

Query: 169 GRPSIKVD--------TSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGR- 219
           G    KVD        TS  R PS++E+ +  Q   S    S + ++ K K    R G+ 
Sbjct: 256 GAKK-KVDIARSKGKITSASRIPSSWEV-VDSQNPDSQPSPSPTTSSYKRKKGA-RLGKT 312

Query: 220 ------PKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGED 273
                 P T+      +  +  ID  P  +  +I  + DV+ DG+CGFRAIA+ +GL E 
Sbjct: 313 SLSPLPPPTRYPKPKAIPVMRPIDYMPRFMVPFIEKVVDVIGDGHCGFRAIAEFMGLTEK 372

Query: 274 GWVQVRKDLLNELYSHLDDYGKLY-GPERVNELIHILSYYENWPASS---DRWMTMPDMG 329
             + +R  L+ EL  H DDY +++ G +R N +++ L    N    +   D+W+T PDMG
Sbjct: 373 NHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNRLHPPANTKTCAHLVDKWLTFPDMG 432

Query: 330 HLIASCYNV 338
           H++A+ Y +
Sbjct: 433 HIVANYYKM 441

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	0.002

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 255 ADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYEN 314
            DGNC F A++D +          R++L +EL   + +Y +    +    L    + Y  
Sbjct: 2   GDGNCLFHAVSDQL------GDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYK 55

Query: 315 WPASSDRWMTMPDMGHL--IASCYNV--VLFHLSSVQCLTFLPLRSEPVHILSRRNIALG 370
           W +    W        +  +A    V  +++ L   +   ++ +    + +  +  I L 
Sbjct: 56  WISKDGAW---GGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLS 112

Query: 371 YVF----GNHF 377
           Y+     GNH+
Sbjct: 113 YLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.69
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.44
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	98.33
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	97.83
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	97.66
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.35
KOG3991	256	consensus Uncharacterized conserved protein [Funct	97.2
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	95.1
PF05412	108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	92.53
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	89.64

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.69  E-value=2.2e-17  Score=139.88  Aligned_cols=109  Identities=25%  Similarity=0.403  Sum_probs=84.4

Q ss_pred             CCCCCccHHHHHHHhc----cCCchHHHHHHHHHHHHh-hcccccccccCChhHHHHHHHhccCCCCCCCcccccccccc
Q 046185          254 VADGNCGFRAIADLIG----LGEDGWVQVRKDLLNELY-SHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDM  328 (380)
Q Consensus       254 ~gDGhCgFraiA~~lg----~~e~~~~~VR~~l~~el~-~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~Wl~~p~~  328 (380)
                      +|||||+|||||++|+    .+++.|..||++++++|+ .+++.|.+++.++       .|       .....|++.+++
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~-------~~-------~~~~~Wg~~~el   66 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD-------KM-------SKPGTWGGEIEL   66 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH-------HH-------TSTTSHEEHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh-------hh-------ccccccCcHHHH
Confidence            6999999999999999    999999999999999999 9988887766422       44       356799999876


Q ss_pred             hhhhhhccceEEEEEeCCcc--eeeecCCCCCCCCCCCCcEEEEEec-----CCcc
Q 046185          329 GHLIASCYNVVLFHLSSVQC--LTFLPLRSEPVHILSRRNIALGYVF-----GNHF  377 (380)
Q Consensus       329 G~iiA~~y~~pI~~ls~~~s--~t~~P~~~~p~~~~~~~~I~L~~~~-----~nHf  377 (380)
                       +++|+.|+|+|++++....  ..+.+..+.-++....++|+|+|..     +|||
T Consensus        67 -~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   67 -QALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             -HHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             -HHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence             9999999999999875332  3343332211122234789999998     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.1e-13  Score=132.82  Aligned_cols=130  Identities=16%  Similarity=0.255  Sum_probs=107.7

Q ss_pred             cccchhhhhhcccccccCCCCCccHHHHHHHhccCC---chHHHHHHHHHHHHhhcccccccccCC---------hhHHH
Q 046185          237 DEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGE---DGWVQVRKDLLNELYSHLDDYGKLYGP---------ERVNE  304 (380)
Q Consensus       237 ~q~p~~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e---~~~~~VR~~l~~el~~~~~~y~~~~~~---------~~~~~  304 (380)
                      ..+...|..-.+..+|+++||||.|+||++||.+..   -+...+|+..++||++|.++|.+|+-+         ++|+.
T Consensus       148 ~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~  227 (302)
T KOG2606|consen  148 EKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDK  227 (302)
T ss_pred             HHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHH
Confidence            467788999999999999999999999999998874   568999999999999999999998761         36999


Q ss_pred             HHHHhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcc-eeeecCCCCCCCCCCCCcEEEEEec-----CCccc
Q 046185          305 LIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQC-LTFLPLRSEPVHILSRRNIALGYVF-----GNHFV  378 (380)
Q Consensus       305 ~~~~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s-~t~~P~~~~p~~~~~~~~I~L~~~~-----~nHfv  378 (380)
                      |++.+.       .++.|++.++. ++|+++|++||.||+.+++ .+|.+..+.      .+||+|.|+-     +-||+
T Consensus       228 Yc~eI~-------~t~~WGgelEL-~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYN  293 (302)
T KOG2606|consen  228 YCREIR-------NTAAWGGELEL-KALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYN  293 (302)
T ss_pred             HHHHhh-------hhccccchHHH-HHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhc
Confidence            999995       67899999876 8999999999999997655 556554432      2578888862     36666


Q ss_pred             cC
Q 046185          379 EV  380 (380)
Q Consensus       379 ~v  380 (380)
                      .|
T Consensus       294 S~  295 (302)
T KOG2606|consen  294 SV  295 (302)
T ss_pred             cc
Confidence            53

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=3.9e-07  Score=91.81  Aligned_cols=126  Identities=19%  Similarity=0.172  Sum_probs=94.5

Q ss_pred             chhhhhhcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCc
Q 046185          240 PVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASS  319 (380)
Q Consensus       240 p~~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~  319 (380)
                      -..+..|+..+..|.+||+|.|||+|+|+.++.|.|..+|++..++++.++++|..+.. +.|..+++....       .
T Consensus       210 ~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt-~~~~~y~k~kr~-------~  281 (371)
T KOG2605|consen  210 AKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVT-EDFTSYIKRKRA-------D  281 (371)
T ss_pred             HHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccc-cchhhccccccc-------C
Confidence            35567889999999999999999999999999999999999999999999999988874 678888887763       3


Q ss_pred             ccccccccchhhhhh---ccceEEEEEeCCc-c-eeeecCCCCCCCCCCCCcEEEEEecCCcccc
Q 046185          320 DRWMTMPDMGHLIAS---CYNVVLFHLSSVQ-C-LTFLPLRSEPVHILSRRNIALGYVFGNHFVE  379 (380)
Q Consensus       320 ~~Wl~~p~~G~iiA~---~y~~pI~~ls~~~-s-~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~  379 (380)
                      +.|++..++ +++|.   -...|+++.+.+. | ....     |...+....+++.|+...||..
T Consensus       282 ~~~gnhie~-Qa~a~~~~~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~n~~~~~h~~~  340 (371)
T KOG2605|consen  282 GEPGNHIEQ-QAAADIYEEIEKPLNITSFKDTCYIQTP-----PAIEESVKMEKYNFWVEVHYNT  340 (371)
T ss_pred             CCCcchHHH-hhhhhhhhhccccceeecccccceeccC-----cccccchhhhhhcccchhhhhh
Confidence            578887765 88885   3445555554322 1 1112     2333333458888888888864

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=3.7e-05  Score=73.42  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             hhhhhhcccccccCCCCCccHHHHHHH
Q 046185          241 VGLQSYIHHIKDVVADGNCGFRAIADL  267 (380)
Q Consensus       241 ~~l~~~i~~i~dv~gDGhCgFraiA~~  267 (380)
                      +.|......+..|.|||||+|||++-+
T Consensus        34 ~~L~~~y~~~R~vRGDGNCFYRAf~F~   60 (244)
T PF10275_consen   34 KKLSQKYSGIRRVRGDGNCFYRAFGFS   60 (244)
T ss_dssp             HHHHHHEEEEE-B-SSSTHHHHHHHHH
T ss_pred             HHHHhhhhheEeecCCccHHHHHHHHH
Confidence            556666788899999999999999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0001  Score=70.29  Aligned_cols=119  Identities=20%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             cccccccCCCCCccHHHHHHHhccCCchH-HHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccccccc
Q 046185          247 IHHIKDVVADGNCGFRAIADLIGLGEDGW-VQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTM  325 (380)
Q Consensus       247 i~~i~dv~gDGhCgFraiA~~lg~~e~~~-~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~Wl~~  325 (380)
                      ++...-|+.|--|+|+||+--+....+.- .++|+-+.+|+-++++.|..-+-...=++|+.=+.       ..+.|++-
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~-------k~dsWGGa  181 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWIL-------KMDSWGGA  181 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHc-------cccccCce
Confidence            34456688899999999988775543222 68999999999999999975333222233343332       33677776


Q ss_pred             ccchhhhhhccceEEEEEeC--CcceeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          326 PDMGHLIASCYNVVLFHLSS--VQCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       326 p~~G~iiA~~y~~pI~~ls~--~~s~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      .+. .||++.|++-|++++.  ..+..|.+-.     +- ..-++|.| ++-||.++
T Consensus       182 IEl-sILS~~ygveI~vvDiqt~rid~fged~-----~~-~~rv~lly-dGIHYD~l  230 (307)
T KOG3288|consen  182 IEL-SILSDYYGVEICVVDIQTVRIDRFGEDK-----NF-DNRVLLLY-DGIHYDPL  230 (307)
T ss_pred             EEe-eeehhhhceeEEEEecceeeehhcCCCC-----CC-CceEEEEe-cccccChh
Confidence            654 5899999999999985  4556666432     11 12466765 69999863

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00011  Score=71.21  Aligned_cols=121  Identities=12%  Similarity=-0.068  Sum_probs=88.1

Q ss_pred             CCCccCcccccccchhhhhhcccccccCCCCCccHHHHHHHhccCC-----chHHHHHHHHHHHHhhcccccccccCCh-
Q 046185          227 STPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGE-----DGWVQVRKDLLNELYSHLDDYGKLYGPE-  300 (380)
Q Consensus       227 ~~p~~~~~~~~q~p~~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e-----~~~~~VR~~l~~el~~~~~~y~~~~~~~-  300 (380)
                      +.|..-.+++-.+|.....--..-.|..|||||.|.+|+++|+..-     +-=...|..-..+...+...|.++..|+ 
T Consensus       150 snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~  229 (306)
T COG5539         150 SNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEE  229 (306)
T ss_pred             hCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchh
Confidence            4566666677777777776666678999999999999999999863     2224555555666666777787766532 


Q ss_pred             -----hHHHHHHHhccCCCCCCCcccccccccchhhhhhccceEEEEEeC-CcceeeecCC
Q 046185          301 -----RVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSS-VQCLTFLPLR  355 (380)
Q Consensus       301 -----~~~~~~~~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~-~~s~t~~P~~  355 (380)
                           .|+.+++.+.       ..+.|+..++. ++||+.+.+|+.++.. +.+..|.+-.
T Consensus       230 t~~m~~~dt~~ne~~-------~~a~~g~~~ei-~qLas~lk~~~~~~nT~~~~ik~n~c~  282 (306)
T COG5539         230 TLAMVLWDTYVNEVL-------FDASDGITIEI-QQLASLLKNPHYYTNTASPSIKCNICG  282 (306)
T ss_pred             hhhcchHHHHHhhhc-------ccccccchHHH-HHHHHHhcCceEEeecCCceEEeeccc
Confidence                 4777888775       56789866654 8999999999999975 4556666543

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0024  Score=60.23  Aligned_cols=86  Identities=14%  Similarity=-0.012  Sum_probs=51.4

Q ss_pred             HHHHHhhcccccccccC-ChhHHHHHHHhccCCCCCCCcccccccccchh--hhhhccceE--EEEEeCCcceeeecCCC
Q 046185          282 LLNELYSHLDDYGKLYG-PERVNELIHILSYYENWPASSDRWMTMPDMGH--LIASCYNVV--LFHLSSVQCLTFLPLRS  356 (380)
Q Consensus       282 l~~el~~~~~~y~~~~~-~~~~~~~~~~L~~~~~~~~~~~~Wl~~p~~G~--iiA~~y~~p--I~~ls~~~s~t~~P~~~  356 (380)
                      .-.+|+++.|.|.+|+. +..+++++..=- .     |+.+   ..+|-+  +|+++.++-  |.+++-+..-|+.++.-
T Consensus       163 tS~~ik~~adfy~pFI~e~~tV~~fC~~eV-E-----Pm~k---esdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~f  233 (256)
T KOG3991|consen  163 TSGFIKSNADFYQPFIDEGMTVKAFCTQEV-E-----PMYK---ESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDF  233 (256)
T ss_pred             HHHHHhhChhhhhccCCCCCcHHHHHHhhc-c-----hhhh---ccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcC
Confidence            34567788888888887 467777776541 1     1111   123334  688888864  44455444445554432


Q ss_pred             CCCCCCCCCcEEEEEecCCccccC
Q 046185          357 EPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       357 ~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      |   ....|.|+|.|- +-||..+
T Consensus       234 p---e~s~P~I~LLYr-pGHYdil  253 (256)
T KOG3991|consen  234 P---EASAPEIYLLYR-PGHYDIL  253 (256)
T ss_pred             c---cccCceEEEEec-CCccccc
Confidence            2   223478999986 8899753

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=95.10  E-value=0.012  Score=37.63  Aligned_cols=24  Identities=29%  Similarity=0.711  Sum_probs=21.0

Q ss_pred             CccceeeccccccchhhhHHHHhc
Q 046185           79 ACGCVICQTHGLPCAHEITEYKRE  102 (380)
Q Consensus        79 ~C~~~~~~~~GlPCaH~i~~~l~~  102 (380)
                      .|+|--....||||+|.|+.+...
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~   25 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHI   25 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHh
Confidence            589999999999999999987654

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.53  E-value=0.13  Score=43.17  Aligned_cols=61  Identities=20%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             cccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCcccccccccchh
Q 046185          251 KDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPDMGH  330 (380)
Q Consensus       251 ~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~Wl~~p~~G~  330 (380)
                      +.+++||+||+++||.-+..               |..  ..|..-+               +.-..+.+.|++--++++
T Consensus         2 ysPP~DG~CG~H~i~aI~n~---------------m~~--~~~t~~l---------------~~~~r~~d~W~~dedl~~   49 (108)
T PF05412_consen    2 YSPPGDGSCGWHCIAAIMNH---------------MMG--GEFTTPL---------------PQRNRPSDDWADDEDLYQ   49 (108)
T ss_pred             CCCCCCCchHHHHHHHHHHH---------------hhc--cCCCccc---------------cccCCChHHccChHHHHH
Confidence            46899999999999876532               111  1111111               122246788999888888


Q ss_pred             hhhhccceEEEEEe
Q 046185          331 LIASCYNVVLFHLS  344 (380)
Q Consensus       331 iiA~~y~~pI~~ls  344 (380)
                      +|-.. +.|+-+.-
T Consensus        50 ~iq~l-~lPat~~~   62 (108)
T PF05412_consen   50 VIQSL-RLPATLDR   62 (108)
T ss_pred             HHHHc-cCceeccC
Confidence            87666 55655433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.64  E-value=0.19  Score=34.32  Aligned_cols=25  Identities=28%  Similarity=0.643  Sum_probs=22.1

Q ss_pred             CCCccceeeccccccchhhhHHHHh
Q 046185           77 RSACGCVICQTHGLPCAHEITEYKR  101 (380)
Q Consensus        77 ~~~C~~~~~~~~GlPCaH~i~~~l~  101 (380)
                      ...|+|......|.||.|.++.++.
T Consensus        14 ~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   14 QASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             ccEeeCCCccccCCcchhHHHHHHh
Confidence            5789999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3pfy_A	185	OTU domain-containing protein 5; structural genomi	4e-06
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-06
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	5e-05
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 63/424 (14%), Positives = 129/424 (30%), Gaps = 111/424 (26%)

Query: 7   QGNFETSWAKIHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIALNITLSE 66
           + N++   + I      Q + +   + +    + +  +     ++      + L   L E
Sbjct: 88  RINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 67  LKRAISIGVDRSA-CG--CV---ICQTHGLPCAHE-----ITEYKRECHPIPLE------ 109
           L+ A ++ +D     G   V   +C ++ + C  +     +           LE      
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 110 -RIDLHWKKLNLVAVTQKQKV--------KLSFQPEFE---LILD------ILKKLKEIA 151
            +ID +W   +  +   K ++        +L     +E   L+L                
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---- 262

Query: 152 NPGCTFLLDPEVKTRTRG-RPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKS 210
           N  C  L    + TR +     +   T+TH       ++L+  E  SL +K         
Sbjct: 263 NLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 211 KAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGL 270
             EV          N   P + ++ I E    ++  +                       
Sbjct: 319 PREVL-------TTN---PRR-LSIIAES---IRDGLATW-------------------- 344

Query: 271 GEDGWVQVRKDLLNEL----YSHLD--DYGKLYG-----PERVNELIHILSYYENWPASS 319
             D W  V  D L  +     + L+  +Y K++      P   +    +LS    W    
Sbjct: 345 --DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVI 400

Query: 320 DRWMTMPDMGHLIASCYNVVL---------FHLSSVQCLTFLPLRSEP-VH--ILSRRNI 367
                  D+  ++   +   L           + S+     + L +E  +H  I+   NI
Sbjct: 401 KS-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 368 ALGY 371
              +
Sbjct: 456 PKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 54/339 (15%), Positives = 97/339 (28%), Gaps = 116/339 (34%)

Query: 17  IHNLLELQHTDIKASFEKSLTVVQHQFKPAKFKHIRGFISIIA-------------LNIT 63
            H+ + L   ++K+   K L                  +SIIA              ++ 
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 64  LSELKRAISIGVDRSACGCVICQTHGLPCAHEITEYKRECH------PIPLERIDLHWKK 117
             +L   I   ++             L  A E  +             IP   + L W  
Sbjct: 352 CDKLTTIIESSLNV------------LEPA-EYRKMFDRLSVFPPSAHIPTILLSLIW-- 396

Query: 118 LNLVAVTQKQKVKLSFQPEFELILDILKKLKEIANPGCTFLLDPEVKTRTRGRPSIKVDT 177
                          F      ++ ++ KL + +      L++ + K  T   PSI ++ 
Sbjct: 397 ---------------FDVIKSDVMVVVNKLHKYS------LVEKQPKESTISIPSIYLEL 435

Query: 178 STHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFID 237
               +              +L+           ++ V     PKT  ++          D
Sbjct: 436 KVKLE-----------NEYALH-----------RSIVDHYNIPKTFDSD----------D 463

Query: 238 EFPVGLQSYI-----HHIKDV-VADGNCGFRAI-ADLIGLGEDGWVQ--VRKD--LLNEL 286
             P  L  Y      HH+K++   +    FR +  D        +++  +R D    N  
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIRHDSTAWNAS 517

Query: 287 YSHLDDYG--KLYGP----------ERVNELIHILSYYE 313
            S L+     K Y P            VN ++  L   E
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 16/172 (9%)

Query: 208 TKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADL 267
               +E +                                  IK +  DG C FRA+AD 
Sbjct: 19  AGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQ 78

Query: 268 IGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTMPD 327
           +   +D    VRK  ++ L  + D +      +           Y N    ++      +
Sbjct: 79  VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTT--------YINRKRKNNCHGNHIE 130

Query: 328 MGHLIASCY--NVVLFHLSSVQCLTFLPLRSEPVHILSRRNIALGYVFGNHF 377
           M   +A  Y   V ++  S+    TF  +            I + Y    H+
Sbjct: 131 M-QAMAEMYNRPVEVYQYSTEPINTFHGIHQN-----EDEPIRVSYHRNIHY 176

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 14/132 (10%)

Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHIL 309
           I     DGNC + +IA+L    +           + +    +   + Y  E     +  L
Sbjct: 33  IVRQPGDGNCFYHSIAELTMPNKT------DHSYHYIKRLTESAARKYYQEEPEARLVGL 86

Query: 310 SY--YENWPASSDRWMTMPDMGHLIASCYNV--VLFHLSSVQCLTFLPLRSEPVHILSRR 365
           S   Y     S + W +  +   ++A    +  +++ +++   +       +        
Sbjct: 87  SLEDYLKRMLSDNEWGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFGDG---DVFT 142

Query: 366 NIALGYVFGNHF 377
            + L +    HF
Sbjct: 143 AVNLLHSGQTHF 154

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHIL 309
           +  V+ D +C F AIA  I   +D    +R+ +  E+ ++   +      +   +     
Sbjct: 22  VHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKD----- 75

Query: 310 SYYENWPASSDRWMTMPDMGHLIASCYNV--VLFHLSSVQCLTF 351
             Y  W    + W    ++G + +    V   +  + +V+   F
Sbjct: 76  --YAQWILKMESWGGAIEIGII-SDALAVAIYVVDIDAVKIEKF 116

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHIL 309
           I     DGNC + +IA+L    +           + +    +   + Y  E     +  L
Sbjct: 33  IVRQPGDGNCFYHSIAELTMPNKT------DHSYHYIKRLTESAARKYYQEEPEARLVGL 86

Query: 310 SY--YENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEPVHILSRRNI 367
           S   Y     S + W +  +   L A    +    + +V     +    +         +
Sbjct: 87  SLEDYLKRMLSDNEWGSTLEASML-AKEMGIT-IIIWTVAASDEVEAGIKFGDGDVFTAV 144

Query: 368 ALGYVFGNHF 377
            L +    HF
Sbjct: 145 NLLHSGQTHF 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.82
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.77
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.66
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.63
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.34
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.1
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	98.95
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.91
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.67
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.21

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.82  E-value=1.2e-20  Score=171.58  Aligned_cols=126  Identities=21%  Similarity=0.189  Sum_probs=92.9

Q ss_pred             hhhhhcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185          242 GLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR  321 (380)
Q Consensus       242 ~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~  321 (380)
                      .++...+.+++|+|||||+|||||+||..+++.|..||+.++++|++++++|.+|+. +.|++|++.|.       .+..
T Consensus        53 l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~-~~~e~Y~~~m~-------~~~~  124 (185)
T 3pfy_A           53 LRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT-EDFTTYINRKR-------KNNC  124 (185)
T ss_dssp             HHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------------------------
T ss_pred             HHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhh-------CCCc
Confidence            347889999999999999999999999999999999999999999999999999885 57999999985       5678


Q ss_pred             ccccccchhhhhhccceEEEEEeCCc-ceeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          322 WMTMPDMGHLIASCYNVVLFHLSSVQ-CLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       322 Wl~~p~~G~iiA~~y~~pI~~ls~~~-s~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      |++..+. .++|..|+++|++++.+. ...+++..    .....++|+|+|.+++||++|
T Consensus       125 WGg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~----~~~~~~~I~L~Y~~~~HYnSv  179 (185)
T 3pfy_A          125 HGNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI----HQNEDEPIRVSYHRNIHYNSV  179 (185)
T ss_dssp             -CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT----SCCTTSCEEEEEETTTEEEEE
T ss_pred             cchHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc----cCCCCCEEEEEECCCCCcccc
Confidence            9998764 899999999999998653 34445421    112247899999999999876

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.77  E-value=2.8e-19  Score=165.96  Aligned_cols=119  Identities=14%  Similarity=0.219  Sum_probs=99.7

Q ss_pred             hcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccccccc
Q 046185          246 YIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTM  325 (380)
Q Consensus       246 ~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~Wl~~  325 (380)
                      -++.+.+|+|||||+|||||+|| .+++.|..||+.++++|++|+++|.+++.++.|++|++.|.       .+..|++.
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~-------~~~~WGg~   89 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWIL-------KMESWGGA   89 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTT-------STTSCCCH
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhc-------CCCEEccH
Confidence            46788999999999999999999 78899999999999999999999987666788999999995       55789988


Q ss_pred             ccchhhhhhccceEEEEEeCC-cceeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          326 PDMGHLIASCYNVVLFHLSSV-QCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       326 p~~G~iiA~~y~~pI~~ls~~-~s~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      ++. .|+|..|+++|++++.. .....|+.    ..  ..++|+|+|. ++||.+|
T Consensus        90 iEL-~Als~~~~~~I~V~~~~~~~~~~~~~----~~--~~~~I~L~Y~-g~HYdsl  137 (212)
T 3by4_A           90 IEI-GIISDALAVAIYVVDIDAVKIEKFNE----DK--FDNYILILFN-GIHYDSL  137 (212)
T ss_dssp             HHH-HHHHHHHTCEEEEEETTTTEEEEEST----TT--CSEEEEEEEC-SSCEEEE
T ss_pred             HHH-HHHHHHHCCCEEEEECCCCCeEEeCC----CC--CCCeEEEEEc-CCcceEE
Confidence            765 89999999999999854 33344432    11  2468999997 9999875

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.66  E-value=6.5e-17  Score=147.10  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=91.0

Q ss_pred             ccccccCCCCCccHHHHHHHhccC-Cch-----HHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185          248 HHIKDVVADGNCGFRAIADLIGLG-EDG-----WVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR  321 (380)
Q Consensus       248 ~~i~dv~gDGhCgFraiA~~lg~~-e~~-----~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~  321 (380)
                      ..++.|+|||||+|||||+||+.+ ++.     |..||+.++++|++|+++   ++.++.|++|++.+.       .++.
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~---~~~~~~~~~Y~~~m~-------~~~~  100 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA---RLVGLSLEDYLKRML-------SDNE  100 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH---HHHCCCHHHHHHHHT-------STTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh---hhcCCCHHHHHHHhh-------CCCc
Confidence            445677999999999999999987 565     999999999999999988   223678999999995       5678


Q ss_pred             ccccccchhhhhhccceEEEEEeCCcc------eeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          322 WMTMPDMGHLIASCYNVVLFHLSSVQC------LTFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       322 Wl~~p~~G~iiA~~y~~pI~~ls~~~s------~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      |++..+. .++|..|+++|++++....      ..|-     +..  ..++|+|+|.+++||.+|
T Consensus       101 WGg~iEL-~Als~~~~v~I~V~~~d~~~~~~~i~~f~-----~~~--~~~~I~L~Y~g~~HYdsl  157 (185)
T 3phx_A          101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFG-----DGD--VFTAVNLLHSGQTHFDAL  157 (185)
T ss_dssp             CCBHHHH-HHHHHHHCCCEEEEEC--CCBCCEEEEES-----SCC--TTTSEEEEEETTTEEEEE
T ss_pred             cCcHHHH-HHHHHHHCCcEEEEEecCCCCceEEEEcC-----CCC--CCCEEEEEECCCcCchhc
Confidence            9988764 8999999999999974322      2221     221  146899999866999875

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.63  E-value=1.9e-16  Score=147.47  Aligned_cols=118  Identities=13%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             ccccccCCCCCccHHHHHHHhccC-Cch-----HHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185          248 HHIKDVVADGNCGFRAIADLIGLG-EDG-----WVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR  321 (380)
Q Consensus       248 ~~i~dv~gDGhCgFraiA~~lg~~-e~~-----~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~  321 (380)
                      ..++.|+|||||.|||||+||+.+ ++.     |..||+.++++|++|+++   ++.++.|++|++.+.       .++.
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~---~~~~~~feeY~~~m~-------~~g~  100 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA---RLVGLSLEDYLKRML-------SDNE  100 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH---HHHCCCHHHHHHHHH-------STTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh---hhcCCCHHHHHHHhc-------CCCc
Confidence            456788999999999999999987 555     899999999999999988   223678999999996       5678


Q ss_pred             ccccccchhhhhhccceEEEEEeCCcc---eeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          322 WMTMPDMGHLIASCYNVVLFHLSSVQC---LTFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       322 Wl~~p~~G~iiA~~y~~pI~~ls~~~s---~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      |++..+. .++|..|+++|++++....   .... .++ +..  ..++|+|+|.+++||.+|
T Consensus       101 WGG~iEL-~AlS~~~~v~I~V~~~d~~g~~~~i~-~fg-e~~--~~~~I~L~Y~g~~HYdSL  157 (219)
T 3phu_A          101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGI-KFG-DGD--VFTAVNLLHSGQTHFDAL  157 (219)
T ss_dssp             CCCHHHH-HHHHHHTTCCEEEEEESSSSBEEEEE-EES-SCC--TTTSEEEEEETTTEEEEE
T ss_pred             cCCHHHH-HHHHHHhCCCEEEEEecCCCCceeEE-Eec-CCC--CCCeEEEEECCCcCchhh
Confidence            9988764 8999999999999864322   1111 111 221  146899999866999875

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.34  E-value=1.9e-12  Score=121.73  Aligned_cols=93  Identities=6%  Similarity=-0.023  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhhcccccccccCC-hhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcce-eee
Q 046185          276 VQVRKDLLNELYSHLDDYGKLYGP-ERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCL-TFL  352 (380)
Q Consensus       276 ~~VR~~l~~el~~~~~~y~~~~~~-~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s~-t~~  352 (380)
                      ..+|.....+|++|+++|.+|+.+ ..+++++. .+.       +++.|.+...+ .|||+++++||.++..+.+. .+-
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve-------~~~~~~~~iei-~ALa~aL~v~I~V~~~d~~~~~~~  204 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE-------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALN  204 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhh-------hhhcccccHHH-HHHHHHhCCCEEEEEcCCCCCccc
Confidence            457888899999999999999973 47999999 674       67899988765 89999999999999865543 222


Q ss_pred             cCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          353 PLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       353 P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      +...++ .  ..+.|+|+|. +.||+.+
T Consensus       205 ~~~~~~-~--~~~~I~LlY~-pgHYdil  228 (234)
T 1tff_A          205 HHVFPE-A--ATPSVYLLYK-TSHYNIL  228 (234)
T ss_dssp             CCCCCC-C--SSCSEEEEEE-TTEEEEE
T ss_pred             cccCCC-C--CCCeEEEEEC-CCCceec
Confidence            222222 2  2367999998 5699864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.10  E-value=1e-10  Score=109.85  Aligned_cols=92  Identities=12%  Similarity=-0.023  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCccee--ee
Q 046185          277 QVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLT--FL  352 (380)
Q Consensus       277 ~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s~t--~~  352 (380)
                      .+|.....+|++|+++|.+|+. +..+++++. .+.       +++.|.+...+ .|||+++++||.++....+..  .-
T Consensus       137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve-------~~~~~~~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~  208 (234)
T 2zfy_A          137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE-------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTTN  208 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHHTCCEEEEECC-CCSSCCE
T ss_pred             HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhh-------hHhhcCCHHHH-HHHHHHhCCCEEEEEcCCCCCCccc
Confidence            5677777899999999999997 458999997 574       67889987765 799999999999987544321  11


Q ss_pred             cCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          353 PLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       353 P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      +..-++ .  ..+.|+|+|. +.||+.+
T Consensus       209 ~~~f~~-~--~~p~I~LlY~-pgHYdiL  232 (234)
T 2zfy_A          209 PHIFPE-G--SEPKVYLLYR-PGHYDIL  232 (234)
T ss_dssp             EEEEST-T--CCCSEEEEEE-TTEEEEE
T ss_pred             ceeCCC-C--CCCeEEEEEC-CCCcccC
Confidence            111112 2  1367999998 5699863

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=98.95  E-value=1.7e-09  Score=103.88  Aligned_cols=91  Identities=10%  Similarity=-0.028  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcc-----
Q 046185          276 VQVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQC-----  348 (380)
Q Consensus       276 ~~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s-----  348 (380)
                      ..+|.....+|+.|+++|.+|+. ...+++++. .+.       ++++|.+...+ .+||++|++||.++..+.+     
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe-------~~~~e~d~leI-~ALa~aL~v~I~V~ylDrs~g~~v  242 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIE-------PMWKDADHLAI-NSLIKAAGTRVRIEYMDRTAAPNG  242 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHTTCCEEEEESSGGGCTTS
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhce-------ehhhcccHHHH-HHHHHHhCCcEEEEEecCCCCCCC
Confidence            34677788899999999999997 457999998 775       77899988755 7999999999988654322     


Q ss_pred             --eeeecCCCCCCCCCCCCcEEEEEecCCcccc
Q 046185          349 --LTFLPLRSEPVHILSRRNIALGYVFGNHFVE  379 (380)
Q Consensus       349 --~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~  379 (380)
                        ...||...    .+..|.|+|.|- +.||..
T Consensus       243 ~~h~~fp~~~----~~~~p~I~LLYr-pgHYDI  270 (284)
T 4dhi_B          243 GWHYDIPSDD----QQIAPEITLLYR-PGHYDV  270 (284)
T ss_dssp             SSEEEESCCC----SCCCCSEEEEEE-TTEEEE
T ss_pred             cccccCCCCC----CCCCCEEEEeec-CCCccc
Confidence              22146432    123467999987 789975

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.91  E-value=1.1e-09  Score=110.15  Aligned_cols=95  Identities=14%  Similarity=-0.019  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCc--ce
Q 046185          274 GWVQVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQ--CL  349 (380)
Q Consensus       274 ~~~~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~--s~  349 (380)
                      ....+|.....+|+.|.++|.+|+. ...+++++. .+.       +++.|.+...+ .+||++||++|.++-.+.  ..
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve-------~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~  370 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE-------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGG  370 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTS-------STTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSS
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhce-------eHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCC
Confidence            3455788888999999999999997 347999999 664       77899988765 799999999988874322  11


Q ss_pred             eeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185          350 TFLPLRSEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       350 t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      ...++.. |.+.  .+.|+|+|. +.||..+
T Consensus       371 ~v~~~~~-~~~~--~~~I~LLYr-PgHYDiL  397 (399)
T 4ddg_A          371 TTNPHIF-PEGS--EPKVYLLYR-PGHYDIL  397 (399)
T ss_dssp             CCCEEET-TTTC--CCCCEEEEE-TBEEEEE
T ss_pred             ccceeeC-CCCC--CCEEEEEEc-CCccccC
Confidence            2212211 2222  367999997 7799853

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.67  E-value=1.3e-07  Score=92.64  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=88.1

Q ss_pred             cccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhccc-cc----------------cccc-C----ChhHHHHHHH
Q 046185          251 KDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLD-DY----------------GKLY-G----PERVNELIHI  308 (380)
Q Consensus       251 ~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~-~y----------------~~~~-~----~~~~~~~~~~  308 (380)
                      ....|||||+.+|++..|-.-.|.-..+|+.|.+-|.+... .|                ..+. .    .++|+.+++.
T Consensus       115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~  194 (390)
T 3dkb_A          115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM  194 (390)
T ss_dssp             BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred             EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence            56789999999999999877778888999999888886421 11                0111 1    3579999998


Q ss_pred             hccCCCCCCCccccccc-ccchhhhhhccceEEEEEeC--------C-------cceeeecCCCCCCCCCCCCcEEEEEe
Q 046185          309 LSYYENWPASSDRWMTM-PDMGHLIASCYNVVLFHLSS--------V-------QCLTFLPLRSEPVHILSRRNIALGYV  372 (380)
Q Consensus       309 L~~~~~~~~~~~~Wl~~-p~~G~iiA~~y~~pI~~ls~--------~-------~s~t~~P~~~~p~~~~~~~~I~L~~~  372 (380)
                      ..+.........--.+. --|-++||+...|||++|+.        |       .+.+|+|+..+|.-.-. .||+|||-
T Consensus       195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~r-sPI~LgY~  273 (390)
T 3dkb_A          195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYR-YPIVLGYD  273 (390)
T ss_dssp             TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCS-SCEEEEEC
T ss_pred             hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccC-CceEEEec
Confidence            87543211100000111 12677999999999999962        1       14789999988886643 48999987


Q ss_pred             cCCccccC
Q 046185          373 FGNHFVEV  380 (380)
Q Consensus       373 ~~nHfv~v  380 (380)
                       .+||-++
T Consensus       274 -s~HFsaL  280 (390)
T 3dkb_A          274 -SHHFVPL  280 (390)
T ss_dssp             -SSCEEEE
T ss_pred             -cCceeee
Confidence             5899763

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.21  E-value=2.7e-06  Score=84.76  Aligned_cols=120  Identities=18%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             cccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccc-cc---------------ccc-CC----hhHHHHHHHh
Q 046185          251 KDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDD-YG---------------KLY-GP----ERVNELIHIL  309 (380)
Q Consensus       251 ~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~-y~---------------~~~-~~----~~~~~~~~~L  309 (380)
                      .-..|||||+.+|++..|-.-.|....+|+.|.+-|++.... |.               .|- .+    ++|+.++...
T Consensus       192 L~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~A  271 (454)
T 3zrh_A          192 LWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLA  271 (454)
T ss_dssp             BCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred             eeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHh
Confidence            467899999999999999888899999999999988863221 11               111 11    3577777766


Q ss_pred             ccCCCCCCCcccccccccchhhhhhccceEEEEEeC-------C-------cceeeecCCCCCCCCCCCCcEEEEEecCC
Q 046185          310 SYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSS-------V-------QCLTFLPLRSEPVHILSRRNIALGYVFGN  375 (380)
Q Consensus       310 ~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~-------~-------~s~t~~P~~~~p~~~~~~~~I~L~~~~~n  375 (380)
                      ..++.  ..+.      -|-++||+...|||++|+.       |       .+.+|+|+..+|.-.-. .||+|||- -.
T Consensus       272 s~Pg~--sLEe------iHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~r-sPIvLgY~-~g  341 (454)
T 3zrh_A          272 SQPGA--SLEQ------THIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWK-SPIALGYT-RG  341 (454)
T ss_dssp             TSTTC--CCCH------HHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCS-CCEEEEEE-TT
T ss_pred             cCCcc--hHHH------HHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcC-CceEEEec-cc
Confidence            54321  1111      2778999999999999983       1       23589999988876643 58999997 56


Q ss_pred             ccccC
Q 046185          376 HFVEV  380 (380)
Q Consensus       376 Hfv~v  380 (380)
                      ||.++
T Consensus       342 HFsaL  346 (454)
T 3zrh_A          342 HFSAL  346 (454)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            99763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.04

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-10  Score=106.22  Aligned_cols=92  Identities=10%  Similarity=0.037  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhcccccccccC-ChhHHHHHHH-hccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcceeeecCC
Q 046185          278 VRKDLLNELYSHLDDYGKLYG-PERVNELIHI-LSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLR  355 (380)
Q Consensus       278 VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~~-L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s~t~~P~~  355 (380)
                      +|.....+++.+.++|.+++. +..+++++.. +.       +.+.|.+..++ .|||.+|+++|.++.......-++..
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~-------~~~~e~d~ieI-~aLa~al~v~I~V~~~d~~~~~~~~~  200 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE-------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALNHH  200 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------CC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHc-------cccccCCcHHH-HHHHHHhCCCEEEEEecCCCCccccc
Confidence            588888999999999999997 5578888764 64       56789988765 89999999999998654432223322


Q ss_pred             CCCCCCCCCCcEEEEEecCCccccC
Q 046185          356 SEPVHILSRRNIALGYVFGNHFVEV  380 (380)
Q Consensus       356 ~~p~~~~~~~~I~L~~~~~nHfv~v  380 (380)
                      ..|..  ..+.|+|.|- +.||+.+
T Consensus       201 ~~~~~--~~~~I~Lly~-pgHYdiL  222 (228)
T d1tffa_         201 VFPEA--ATPSVYLLYK-TSHYNIL  222 (228)
T ss_dssp             CCCCC--SSCSEEEEEE-TTEEEEE
T ss_pred             cCCCC--CCCEEEEEeC-CCCcccC
Confidence            22332  2468999985 7899864