Citrus Sinensis ID: 046189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccHHHHHccccHHHHHHHHHHHHHcccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccEEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHcccccccHHHHHHcccHHcc
Coil and Loop (DISEMBL)
MKQLIRRLSrvadssqysllrsdstqaarrrpRRAESFRALKASLarrspnskpvpeghvpvyvgDEMERFVVSAELLNHPVFVGLLNKSAQeygyeqkgvlripcHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Flexible Loop (DISEMBL)
mkqlirrlsrvadssqysllrsdstqaarrrprraeSFRALKaslarrspnskpvpegHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESlrlglesrdlqdllssvsdeyf
Low Complexity Region (SEG)
MKQLIRRLSRVADSSQYSLLRSDSTQaarrrprraesfraLKASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Disordered region (IsUnstruct)
***********************************************************VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLE****************
Disordered Region (DISOPRED)
MKQLIRRLS*************************************************HVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Disordered Region (DISEMBL)
***************QYSLLR**************ESFRALKAS**********VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Disordered Region (DISPRO)
MKQ*IRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFR*************KPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVSDEYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P33082	82	Auxin-induced protein X15	no	no	0.525	0.890	0.391	3e-10
P33080	92	Auxin-induced protein X10	no	no	0.561	0.847	0.419	2e-09
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.568	0.858	0.361	4e-09
P33081	82	Auxin-induced protein 15A	no	no	0.525	0.890	0.364	5e-09
P33083	90	Auxin-induced protein 6B	no	no	0.561	0.866	0.395	1e-08
P33079	93	Auxin-induced protein 10A	no	no	0.374	0.559	0.471	8e-08

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 47  RRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQK-GVLRIP 105
           R++ N+   P+G++ VYVG++M+RFV+    +N P F  LL ++ +E+GY+   G L IP
Sbjct: 9   RKASNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIP 68

Query: 106 CHVVVFERVVESLR 119
           C   VF+R+   L 
Sbjct: 69  CSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 42  KASLARRSPNSKPV--PEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQK 99
           K S+A    +SK V  P+G++ VYVGD+M RF++    LN P F  LLN++ +E+GY+  
Sbjct: 10  KTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHP 69

Query: 100 -GVLRIPCHVVVFERVVESLR 119
            G L IPC    F  V   L 
Sbjct: 70  MGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 40  ALKASLARRSPNSKPV---PEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGY 96
            ++ +L+ R+  S  V   P+G++ VYVG+ M+RFV+    LN P+F  LL+++ +E+GY
Sbjct: 7   GIRKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGY 66

Query: 97  EQK-GVLRIPCHVVVFERVVESL 118
           +   G L IPC   +F+ +   L
Sbjct: 67  DHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 47  RRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQK-GVLRIP 105
           R++  +   P+G++ VYVG++++RFV+    LN P F  LL+++ +E+GY+   G L IP
Sbjct: 9   RKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIP 68

Query: 106 CHVVVFERVVESLR 119
           C   VF+ +   L 
Sbjct: 69  CSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 42  KASLARRSPNSKPVP--EGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQ- 98
           KAS +    +SK V   +G++ VYVG++M RFV+    LN P F  LL+++ +E+GY   
Sbjct: 10  KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHP 69

Query: 99  KGVLRIPCHVVVFERVVESLR 119
            G L IPC   VF+ +   L 
Sbjct: 70  NGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 55  VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQK-GVLRIPC 106
           VP+G+  VYVGD+M RF +    LN P F  LL+++ +E+GY+   G L IPC
Sbjct: 26  VPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
255544640	142	Indole-3-acetic acid-induced protein ARG	0.992	0.971	0.765	1e-47
356528687	138	PREDICTED: auxin-induced protein X15-lik	0.985	0.992	0.702	1e-46
224094216	138	SAUR family protein [Populus trichocarpa	0.942	0.949	0.705	3e-46
356556995	139	PREDICTED: auxin-induced protein X15-lik	0.978	0.978	0.692	7e-46
297834094	132	auxin-responsive family protein [Arabido	0.899	0.946	0.751	8e-46
15230601	132	SAUR-like auxin-responsive protein [Arab	0.906	0.954	0.746	8e-46
224081427	136	SAUR family protein [Populus trichocarpa	0.928	0.948	0.746	3e-45
225465036	131	PREDICTED: uncharacterized protein LOC10	0.920	0.977	0.721	4e-45
449464644	139	PREDICTED: uncharacterized protein LOC10	0.964	0.964	0.694	8e-45
388506126	142	unknown [Medicago truncatula]	0.985	0.964	0.661	2e-43

>gi|255544640|ref|XP_002513381.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis] gi|223547289|gb|EEF48784.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/141 (76%), Positives = 121/141 (85%), Gaps = 3/141 (2%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRA-ESFRALKASLARRSPNSKPVPEGH 59
           MKQLIRRLSRVADSSQYSLLRSDS++A   R  R  +SFR L  S ARR    KPVPEGH
Sbjct: 1   MKQLIRRLSRVADSSQYSLLRSDSSRARCSRSARRAQSFRCLVKS-ARRVAGGKPVPEGH 59

Query: 60  VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR 119
           VPVYVGDEMERFVVSAELLNHP+F+GLLNKSAQEYGY+QKGVL IPCHV+VFERV+E+LR
Sbjct: 60  VPVYVGDEMERFVVSAELLNHPIFIGLLNKSAQEYGYDQKGVLMIPCHVLVFERVMEALR 119

Query: 120 LGLESRDLQDLLSS-VSDEYF 139
           LGL+SRDL +LL S V+D+Y 
Sbjct: 120 LGLDSRDLDELLGSLVTDDYL 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528687|ref|XP_003532931.1| PREDICTED: auxin-induced protein X15-like [Glycine max]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHV 60
           MKQLIRRLSRVADSS Y+LLRSDS+QA   R  RAESFR    S  RRS ++  VPEGHV
Sbjct: 1   MKQLIRRLSRVADSSNYTLLRSDSSQACHHRRPRAESFRLSAPSKIRRS-SAAVVPEGHV 59

Query: 61  PVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRL 120
           P+YVGDEMERFVV AELLNHPVFV LLN+SAQEYGYEQKGVLR+PC V VFERV+++LRL
Sbjct: 60  PIYVGDEMERFVVCAELLNHPVFVKLLNESAQEYGYEQKGVLRLPCRVFVFERVLDALRL 119

Query: 121 GLESRDLQDLLSSVSDEY 138
           GL +RD+ +L++   +E+
Sbjct: 120 GLNARDIAELVNFSPEEF 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094216|ref|XP_002310094.1| SAUR family protein [Populus trichocarpa] gi|222852997|gb|EEE90544.1| SAUR family protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 113/146 (77%), Gaps = 15/146 (10%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDS-----TQAARRRPRRAESFRALKASLARRSPNSKPV 55
           MKQLIRRLSRVADSSQYSLLR +S     T  ARRR   + S        A R    KPV
Sbjct: 1   MKQLIRRLSRVADSSQYSLLRPNSQSTPSTTNARRRSGGSRS--------AHRRGADKPV 52

Query: 56  PEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVV 115
           PEGHVPVYVGDEMERF VSAELLN PVF+ LLNKSAQEYGYEQ+GVLRIPCHV+VFERV+
Sbjct: 53  PEGHVPVYVGDEMERFTVSAELLNRPVFIWLLNKSAQEYGYEQRGVLRIPCHVLVFERVI 112

Query: 116 ESLRLGLESRDLQDLLSSV--SDEYF 139
           ESLRLGLES DL+DLL S+  S++Y 
Sbjct: 113 ESLRLGLESSDLEDLLGSLFTSEDYL 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556995|ref|XP_003546804.1| PREDICTED: auxin-induced protein X15-like [Glycine max]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 115/140 (82%), Gaps = 4/140 (2%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDS--TQAARRRPRRAESFRALKASLARRSPNSKPVPEG 58
           MKQLIRRLSRVADSS Y+LLR+DS  +Q    R RRAESFR   A+  RRS  S  VPEG
Sbjct: 1   MKQLIRRLSRVADSSNYTLLRADSAASQRCHHRRRRAESFRLAAAAKIRRS--SAVVPEG 58

Query: 59  HVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESL 118
           HVP+YVGDEMERFVV AELLNHPVFV LLN+SAQEYGYEQKGVLR+PC V VFERV+++L
Sbjct: 59  HVPIYVGDEMERFVVCAELLNHPVFVKLLNESAQEYGYEQKGVLRLPCRVFVFERVLDAL 118

Query: 119 RLGLESRDLQDLLSSVSDEY 138
           RLGL++RD+ +L++   +E+
Sbjct: 119 RLGLDARDVAELVNFSPEEF 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834094|ref|XP_002884929.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297330769|gb|EFH61188.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%), Gaps = 8/133 (6%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSP-NSKPVPEGH 59
           MKQLIRRLSRVADS+QYSLLRSDS    +R  RR+ESF  L++S++RRS   +  VPEGH
Sbjct: 1   MKQLIRRLSRVADSAQYSLLRSDS----QRPSRRSESF--LRSSVSRRSKKQTSSVPEGH 54

Query: 60  VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR 119
           VPVYVGDEMERFVVSAELLNHPVF+GLLN+SAQEYGYEQKGVL+IPCHV+VFER++ESLR
Sbjct: 55  VPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESLR 114

Query: 120 LGLE-SRDLQDLL 131
           LGL    D+QDL+
Sbjct: 115 LGLPVPIDVQDLI 127

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230601|ref|NP_187889.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|11994425|dbj|BAB02427.1| auxin-regulated protein-like [Arabidopsis thaliana] gi|44681346|gb|AAS47613.1| At3g12830 [Arabidopsis thaliana] gi|45773880|gb|AAS76744.1| At3g12830 [Arabidopsis thaliana] gi|110737864|dbj|BAF00870.1| hypothetical protein [Arabidopsis thaliana] gi|332641729|gb|AEE75250.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 115/134 (85%), Gaps = 8/134 (5%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSP-NSKPVPEGH 59
           MKQLIRRLSRVADS+QYSLLRSDS    +R  RR+ESF  L++S+ RRS   +  VPEGH
Sbjct: 1   MKQLIRRLSRVADSAQYSLLRSDS----QRPSRRSESF--LRSSVTRRSKKQTSSVPEGH 54

Query: 60  VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR 119
           VPVYVGDEMERFVVSAELLNHPVF+GLLN+SAQEYGYEQKGVL+IPCHV+VFER++ESLR
Sbjct: 55  VPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESLR 114

Query: 120 LGLE-SRDLQDLLS 132
           LGL    D+QDL+ 
Sbjct: 115 LGLPVPIDVQDLIG 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081427|ref|XP_002306405.1| SAUR family protein [Populus trichocarpa] gi|222855854|gb|EEE93401.1| SAUR family protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 110/134 (82%), Gaps = 5/134 (3%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHV 60
           MKQLIRRLSRVADSSQYSLLRS+S          A   R+  +  ARR  + KPVPEGHV
Sbjct: 1   MKQLIRRLSRVADSSQYSLLRSNSQSTTT-----ASRRRSGGSRSARRRGSDKPVPEGHV 55

Query: 61  PVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRL 120
           PVYVGDEMERF VSAELLNHPVF+ LLNKSAQEYGYEQKGVLRIPCHV+VFERV+ESLRL
Sbjct: 56  PVYVGDEMERFTVSAELLNHPVFIWLLNKSAQEYGYEQKGVLRIPCHVLVFERVMESLRL 115

Query: 121 GLESRDLQDLLSSV 134
           GLES DL+D+L S+
Sbjct: 116 GLESSDLEDVLGSL 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465036|ref|XP_002266248.1| PREDICTED: uncharacterized protein LOC100258180 [Vitis vinifera]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 111/133 (83%), Gaps = 5/133 (3%)

Query: 1   MKQLIRRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHV 60
           MK+LIRRLSRV+DSSQY LLRSDS  A R   RR+ESFR  K    RR  ++  VP GH+
Sbjct: 1   MKKLIRRLSRVSDSSQYCLLRSDSRSATR--TRRSESFRTAKL---RRPLSAGGVPHGHL 55

Query: 61  PVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRL 120
           PVYVG+EMERF+VSAE LNHPVFV LLNKSAQEYGYEQ+GVLRIPCHV+VFERV+E+LRL
Sbjct: 56  PVYVGEEMERFIVSAEFLNHPVFVNLLNKSAQEYGYEQQGVLRIPCHVLVFERVLEALRL 115

Query: 121 GLESRDLQDLLSS 133
           G ES DLQ+L++S
Sbjct: 116 GDESGDLQELVNS 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464644|ref|XP_004150039.1| PREDICTED: uncharacterized protein LOC101219677 [Cucumis sativus] gi|449534032|ref|XP_004173973.1| PREDICTED: uncharacterized protein LOC101223987 [Cucumis sativus]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 100/144 (69%), Positives = 116/144 (80%), Gaps = 10/144 (6%)

Query: 1   MKQLIRRLSRVADSSQ--YSLLRSDSTQAARRRPRRAESFRALKASLARRS--PNSKPVP 56
           MKQLIRRLSRVADSSQ  Y LLR+       +RP RA SFRA  A+  RRS    + PVP
Sbjct: 1   MKQLIRRLSRVADSSQSHYCLLRTPD-----QRPARAHSFRAAAANKFRRSRSEGALPVP 55

Query: 57  EGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVE 116
           +GHVPVYVGDEMERF VSAELLNHPVFV LL+KSAQEYGYEQKGVLRIPCHV++FERV+E
Sbjct: 56  QGHVPVYVGDEMERFAVSAELLNHPVFVTLLDKSAQEYGYEQKGVLRIPCHVLLFERVLE 115

Query: 117 SLRLG-LESRDLQDLLSSVSDEYF 139
           ++R+G  +SRDL DLLSS+S ++ 
Sbjct: 116 AIRIGDPDSRDLHDLLSSLSGDFL 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506126|gb|AFK41129.1| unknown [Medicago truncatula]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 5/142 (3%)

Query: 1   MKQLIRRLSRVADSS--QYSLLRSDSTQAARRRPRR--AESFRALKASLARRSPNSKPVP 56
           MKQLIRRLSRVADSS  QY+LLR+D++   R    R   ESFR    +  RRSP S  VP
Sbjct: 1   MKQLIRRLSRVADSSSTQYTLLRTDTSTRRRPNLGRRRVESFRLEVLAKIRRSP-SAVVP 59

Query: 57  EGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVE 116
           EGHVP+YVGDEMERFVV AELLNHPVF+ LLN+SAQEYGYEQKGVLR+PCHV+VFERV+E
Sbjct: 60  EGHVPIYVGDEMERFVVCAELLNHPVFIKLLNESAQEYGYEQKGVLRLPCHVLVFERVLE 119

Query: 117 SLRLGLESRDLQDLLSSVSDEY 138
           +L+LGL++R + +L +S  +E+
Sbjct: 120 ALKLGLDTRHINELFNSSEEEF 141

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2087700	132	AT3G12830 "AT3G12830" [Arabido	0.899	0.946	0.706	5.2e-42
TAIR|locus:2011801	110	AT1G56150 "AT1G56150" [Arabido	0.510	0.645	0.845	7.3e-38
TAIR|locus:2032915	147	SAUR41 "AT1G16510" [Arabidopsi	0.949	0.897	0.613	1.7e-34
TAIR|locus:2207375	134	AT1G79130 "AT1G79130" [Arabido	0.928	0.962	0.562	1.6e-31
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.532	0.5	0.5	9.1e-13
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.460	0.615	0.406	1.4e-12
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.532	0.544	0.437	2.4e-12
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.510	0.443	0.402	3.9e-12
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.532	0.480	0.468	5e-12
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.510	0.586	0.426	1.3e-11

TAIR|locus:2087700 AT3G12830 "AT3G12830" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 94/133 (70%), Positives = 108/133 (81%)

Query:     1 MKQLIRRLSRVADSSQYSLLRSDSTQXXXXXXXXXXXXXXLKASLARRSPN-SKPVPEGH 59
             MKQLIRRLSRVADS+QYSLLRSDS +              L++S+ RRS   +  VPEGH
Sbjct:     1 MKQLIRRLSRVADSAQYSLLRSDSQRPSRRSESF------LRSSVTRRSKKQTSSVPEGH 54

Query:    60 VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR 119
             VPVYVGDEMERFVVSAELLNHPVF+GLLN+SAQEYGYEQKGVL+IPCHV+VFER++ESLR
Sbjct:    55 VPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESLR 114

Query:   120 LGLESR-DLQDLL 131
             LGL    D+QDL+
Sbjct:   115 LGLPVPIDVQDLI 127

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2011801 AT1G56150 "AT1G56150" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query:    55 VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERV 114
             VPEGHVPVYVG EMERFVV+AELLNHPVFV LL +SAQEYGYEQ+GVLRIPCHV+VFER+
Sbjct:    38 VPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERI 97

Query:   115 VESLRLGLESR 125
             +ESLRLGL  R
Sbjct:    98 LESLRLGLADR 108

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2032915 SAUR41 "AT1G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 84/137 (61%), Positives = 101/137 (73%)

Query:     1 MKQLIRRLSRVADSS-QYSLLRSDSTQXXXXXXXXXXXXXXLKASLARRSPNSKPVPEGH 59
             MK LIRRLSRVADSS ++S+ RS S+                 +    R  N+  VP GH
Sbjct:     1 MKHLIRRLSRVADSSSEFSIRRSTSSFRNRRGHHRLHAPPPPWSICPARRVNT--VPAGH 58

Query:    60 VPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR 119
             VPVYVG+EMERFVVSAEL+NHP+FVGLLN+SAQEYGY QKGVL IPCHV+VFERVVE+LR
Sbjct:    59 VPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVETLR 118

Query:   120 LG-LE-SRDLQDLLSSV 134
             LG  E S DL++L++S+
Sbjct:   119 LGGFEGSGDLENLVASL 135

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2207375 AT1G79130 "AT1G79130" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 77/137 (56%), Positives = 92/137 (67%)

Query:     1 MKQLIRRLSRVADSSQYSLLRSDSTQXXXXXXXXXXXXXXLKASLARRSPNSKPVPEGHV 60
             MK LIRRLSR+ADSS  +  RS                      L +R+  +  VP GHV
Sbjct:     1 MKPLIRRLSRIADSSSCNRNRSGDIHHPTSTYSSSVF-------LVKRATVASSVPSGHV 53

Query:    61 PVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRL 120
             PV VG++ ERFVVSAELLNHPVFVGLLN+SAQEYGY QKGVL IPC+V VFE+VVESLR 
Sbjct:    54 PVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVESLRS 113

Query:   121 GLESRDLQDLLSSVSDE 137
             G+   D  +L++S+S E
Sbjct:   114 GIAD-DTSELIASLSGE 129

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 39/78 (50%), Positives = 48/78 (61%)

Query:    42 KASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGV 101
             + S  RRS  S  VP GHV VYVG    RFVV A  LNHP+ + LL K+ +E+G+  +G 
Sbjct:    29 RMSSVRRSVPSD-VPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGP 87

Query:   102 LRIPCHVVVFERVVESLR 119
             L IPC   VFE   ES+R
Sbjct:    88 LVIPCEESVFE---ESIR 102

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query:    55 VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERV 114
             VP+GH PVYVG++  R++V    L HP F  LL ++ +E+G+     L IPC  VVF  +
Sbjct:    40 VPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSL 99

Query:   115 VESL 118
                +
Sbjct:   100 TSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/80 (43%), Positives = 49/80 (61%)

Query:    53 KPVPEGHVPVYVG---DEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVV 109
             K VP+G + + VG   +E +RFVV     NHP+F+ LL ++ +EYG+EQKG + IPCHV 
Sbjct:    28 KDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVE 87

Query:   110 VFERVVESLRLGLESRDLQD 129
             VF  V + +      R L D
Sbjct:    88 VFRYVQDMIN---RERSLDD 104

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query:    48 RSPNSKP-VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPC 106
             +SP   P VP+G++ VYVG E+ RF++    L+H +F  LL K+ +EYG++  G L IPC
Sbjct:    71 QSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPC 130

Query:   107 HVVVFERVVESL 118
              V  F+ +++ +
Sbjct:   131 EVETFKYLLKCI 142

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query:    41 LKASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKG 100
             + +S +R  P+   VP GHV VYVG    RFVV A  LNHPV   LL ++ +E+G+  +G
Sbjct:    30 MSSSFSRCVPSD--VPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQG 87

Query:   101 VLRIPCHVVVFERVVESLR 119
              L IPC   VFE   ES+R
Sbjct:    88 PLVIPCEESVFE---ESIR 103

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/75 (42%), Positives = 49/75 (65%)

Query:    47 RRSPNSKPVPEGHVPVYVG---DEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLR 103
             ++S   K VP+G + + VG   +E +RF+V     NHP+F+ LL ++  EYG++QKG + 
Sbjct:    16 KQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTIT 75

Query:   104 IPCHVVVFERVVESL 118
             IPCHV  F R V++L
Sbjct:    76 IPCHVEEF-RYVQAL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-35
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	5e-14
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-11
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-11

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  118 bits (297), Expect = 1e-35
 Identities = 36/83 (43%), Positives = 53/83 (63%)

Query: 37  SFRALKASLARRSPNSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGY 96
           S  + ++  +    +S  VP+GH  VYVG+E  RFVV    LNHP+F  LL+++ +E+G+
Sbjct: 17  SAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGF 76

Query: 97  EQKGVLRIPCHVVVFERVVESLR 119
           +Q G L IPC VVVFE ++  L 
Sbjct: 77  DQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 63.2 bits (154), Expect = 5e-14
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query: 55  VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERV 114
           VP+GH PVYVG+   R++V    L HP F  LL ++ +E+G++    L IPC  VVF  +
Sbjct: 40  VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSL 99

Query: 115 VESLR 119
              +R
Sbjct: 100 TSMIR 104

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 43  ASLARRSPNSKPVPEGHVPVYVGDEME--RFVVSAELLNHPVFVGLLNKSAQEYGYEQK- 99
           +S +  +  S  VP+GHV VYVG++ME  RFVV    LNHP+F   LN++ +E G+    
Sbjct: 27  SSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSM 86

Query: 100 GVLRIPCHVVVFERVVESLRL 120
           G L IPC    F  ++ S +L
Sbjct: 87  GGLTIPCREESFLHLITSHQL 107

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 56.3 bits (135), Expect = 2e-11
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 9/83 (10%)

Query: 44  SLARR----SPNSKPVPEGHVPVYVGDEME----RFVVSAELLNHPVFVGLLNKSAQEYG 95
           SLA R    S +S  VP+GHV VYVG+++E    RFVV    LNHP F   L+++ +E+G
Sbjct: 20  SLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79

Query: 96  YEQK-GVLRIPCHVVVFERVVES 117
           +    G L IPC   VF  ++ S
Sbjct: 80  FNHPMGGLTIPCREEVFLDLIAS 102

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	91.34
PRK02899	197	adaptor protein; Provisional	81.92

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=223.89  Aligned_cols=68  Identities=38%  Similarity=0.806  Sum_probs=65.7

Q ss_pred             CCCCCCCCeeEEEEcCCceEEEEecCCcCcHHHHHHHhhhhhhcCcccCCeEEecCcHHHHHHHHHHH
Q 046189           51 NSKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESL  118 (139)
Q Consensus        51 ~~~~vpkG~~~VyVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l  118 (139)
                      .+.+||+||||||||++++||+||++|||||.|++||++|||||||+++|+|+|||+++.|++++|+|
T Consensus        36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999999999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=7.7e-37  Score=222.31  Aligned_cols=68  Identities=49%  Similarity=0.936  Sum_probs=66.0

Q ss_pred             CCCCCCCeeEEEEcCCceEEEEecCCcCcHHHHHHHhhhhhhcCcccCCeEEecCcHHHHHHHHHHHH
Q 046189           52 SKPVPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLR  119 (139)
Q Consensus        52 ~~~vpkG~~~VyVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l~  119 (139)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|+++||+|+
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=210.67  Aligned_cols=95  Identities=35%  Similarity=0.626  Sum_probs=76.2

Q ss_pred             HHHhhhhhccccccccCcchhhhhccchhhhhHHHHHHhhhhCCCCCCCCCCCeeEEEEcC----CceEEEEecCCcCcH
Q 046189            6 RRLSRVADSSQYSLLRSDSTQAARRRPRRAESFRALKASLARRSPNSKPVPEGHVPVYVGD----EMERFVVSAELLNHP   81 (139)
Q Consensus         6 ~rl~rv~~ss~~~l~rs~s~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~vpkG~~~VyVG~----e~~RfvVp~~yLnhP   81 (139)
                      .++..+.+.-||++.|++.....                 ......+.+|||||||||||+    |++|||||++|||||
T Consensus         3 ~~~~~~~~~~k~~~~~~~~~~~~-----------------~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP   65 (105)
T PLN03220          3 LSRFAISNATKQILKLNSLANRN-----------------RTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHP   65 (105)
T ss_pred             cchhhhHHHHHHHHHHHhhcccc-----------------cccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCCh
Confidence            34555655557887776522210                 012234578999999999998    579999999999999


Q ss_pred             HHHHHHhhhhhhcCccc-CCeEEecCcHHHHHHHHHH
Q 046189           82 VFVGLLNKSAQEYGYEQ-KGVLRIPCHVVVFERVVES  117 (139)
Q Consensus        82 ~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~  117 (139)
                      .|++||++|||||||+| +|+|+|||+++.|++++..
T Consensus        66 ~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         66 SFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            99999999999999998 6999999999999999863

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=4.6e-32  Score=200.37  Aligned_cols=68  Identities=46%  Similarity=0.828  Sum_probs=63.6

Q ss_pred             CCCCCCCCCeeEEEEcC--CceEEEEecCCcCcHHHHHHHhhhhhhcCccc-CCeEEecCcHHHHHHHHHH
Q 046189           50 PNSKPVPEGHVPVYVGD--EMERFVVSAELLNHPVFVGLLNKSAQEYGYEQ-KGVLRIPCHVVVFERVVES  117 (139)
Q Consensus        50 ~~~~~vpkG~~~VyVG~--e~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~  117 (139)
                      +.+..|||||+|||||+  |++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++||..
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            44578999999999997  58999999999999999999999999999997 6999999999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=91.34  E-value=0.28  Score=33.72  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             EEEEcCCceEEEEecCCcC-cH--HHHHHHhhhhhhcCcccCCeEEecCcHHHHHHHHHHHHcC
Q 046189           61 PVYVGDEMERFVVSAELLN-HP--VFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLG  121 (139)
Q Consensus        61 ~VyVG~e~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l~~~  121 (139)
                      .+=||.  ++|.++.+-|. +|  .|..++..-.....-+.+|.+-|.++...|++||..++.+
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            345775  68999987776 43  6777777642222234579999999999999999999994

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=81.92  E-value=1.2  Score=35.80  Aligned_cols=25  Identities=24%  Similarity=0.691  Sum_probs=21.6

Q ss_pred             cHHHHHHHhhhhhhcCcccCCeEEe
Q 046189           80 HPVFVGLLNKSAQEYGYEQKGVLRI  104 (139)
Q Consensus        80 hP~F~~LL~~aeeEfG~~~~G~L~I  104 (139)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4567788999999999998999976

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 31/123 (25%)

Query: 37  SFRALKASLARRS-------PNSKPVPEGHVPVY----VGDEMERFVVSAELLNHPVFVG 85
           S   L+ +  R+        P S  +P   + +     +  ++   V   +L  +     
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKY----S 415

Query: 86  LLNKSAQEYGYEQKGV---LRIPC------HVVVFERVVESLRLGLESRDLQDLLSSVSD 136
           L+ K  +E       +   L++        H      +V+   +  ++ D  DL+    D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNI-PKTFDSDDLIPPYLD 470

Query: 137 EYF 139
           +YF
Sbjct: 471 QYF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00